1
|
Li X, Zheng X, Yadav N, Saha S, Salama ES, Li X, Wang L, Jeon BH. Rational management of the plant microbiome for the Second Green Revolution. PLANT COMMUNICATIONS 2024; 5:100812. [PMID: 38213028 PMCID: PMC11009158 DOI: 10.1016/j.xplc.2024.100812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 11/06/2023] [Accepted: 01/05/2024] [Indexed: 01/13/2024]
Abstract
The Green Revolution of the mid-20th century transformed agriculture worldwide and has resulted in environmental challenges. A new approach, the Second Green Revolution, seeks to enhance agricultural productivity while minimizing negative environmental impacts. Plant microbiomes play critical roles in plant growth and stress responses, and understanding plant-microbiome interactions is essential for developing sustainable agricultural practices that meet food security and safety challenges, which are among the United Nations Sustainable Development Goals. This review provides a comprehensive exploration of key deterministic processes crucial for developing microbiome management strategies, including the host effect, the facilitator effect, and microbe-microbe interactions. A hierarchical framework for plant microbiome modulation is proposed to bridge the gap between basic research and agricultural applications. This framework emphasizes three levels of modulation: single-strain, synthetic community, and in situ microbiome modulation. Overall, rational management of plant microbiomes has wide-ranging applications in agriculture and can potentially be a core technology for the Second Green Revolution.
Collapse
Affiliation(s)
- Xiaofang Li
- Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Shijiazhuang 050021, China
| | - Xin Zheng
- Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Shijiazhuang 050021, China
| | - Nikita Yadav
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea
| | - Shouvik Saha
- Natural Resources Research Institute, University of Minnesota Duluth, Hermantown, MN 55811, USA; Department of Biotechnology, Brainware University, Barasat, Kolkata 700125, West Bengal, India
| | - El-Sayed Salama
- Department of Occupational and Environmental Health, School of Public Health, Lanzhou University, Lanzhou, Gansu 730000, China
| | - Xiangkai Li
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Science, Lanzhou University, Lanzhou, Gansu 730000, China
| | - Likun Wang
- Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Shijiazhuang 050021, China.
| | - Byong-Hun Jeon
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul 04763, South Korea.
| |
Collapse
|
2
|
Razgulin SM. Mycorrhizal Complexes and Their Role in the Ecology of Boreal Forests (Review). BIOL BULL+ 2022. [DOI: 10.1134/s1062359022060140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
|
3
|
Carbajal-Valenzuela IA, Muñoz-Sanchez AH, Hernández-Hernández J, Barona-Gómez F, Truong C, Cibrián-Jaramillo A. Microbial Diversity in Cultivated and Feral Vanilla Vanilla planifolia Orchids Affected by Stem and Rot Disease. MICROBIAL ECOLOGY 2022; 84:821-833. [PMID: 34671827 DOI: 10.1007/s00248-021-01876-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 09/17/2021] [Indexed: 06/13/2023]
Abstract
The worldwide production of vanilla, a native orchid from Mexico, is greatly affected by stem and root rot disease (SRD), typically associated with Fusarium oxysporum fungi. We hypothesized that the presence of Fusarium species in vanilla is not sufficient for the plant to express symptoms of the disease. We described the taxonomic composition of endophytic microbiomes in symptomatic and asymptomatic vanilla plants using 16S and ITS rDNA metabarcoding, and ITS Sanger sequences generated from fungal isolates. We compared the bacterial and fungal diversity in vanilla plants from a long-term plantation, and from feral plants found near abandoned plantations that did not present SRD symptoms. No significant differences were found in the species richness of the bacterial and fungal microbiome among feral, or asymptomatic and symptomatic cultivated vanilla. However, significant differences were detected in both fungal and bacterial diversity from different organs in the same plant, with roots being more diverse than stems. We found that Proteobacteria and Actinobacteria, as well as the fungal families Nectriaceae and Xylariaceae, constitute the core of the vanilla microbiome that inhabits the root and stem of both cultivated and feral plants. Our work provides information on the microbial diversity associated to root and stem rot in vanilla and lays the groundwork for a better understanding of the role of the microbiome in vanilla fungal diseases.
Collapse
Affiliation(s)
- Ireri A Carbajal-Valenzuela
- Unidad de Genómica Avanzada (Langebio), CINVESTAV, Km 9.6 Libramiento Norte, Carretera León-Irapuato, CP 36824, Irapuato, Mexico
| | - Ariel H Muñoz-Sanchez
- Unidad de Genómica Avanzada (Langebio), CINVESTAV, Km 9.6 Libramiento Norte, Carretera León-Irapuato, CP 36824, Irapuato, Mexico
| | - Juan Hernández-Hernández
- Instituto Nacional de Investigaciones Forestales Agrícolas y Pecuarias (INIFAP), Veracruz, Mexico
| | - Francisco Barona-Gómez
- Unidad de Genómica Avanzada (Langebio), CINVESTAV, Km 9.6 Libramiento Norte, Carretera León-Irapuato, CP 36824, Irapuato, Mexico
| | - Camille Truong
- Royal Botanic Gardens Victoria, Birdwood Avenue, Melbourne, VIC, 3004, Australia
| | - Angélica Cibrián-Jaramillo
- Unidad de Genómica Avanzada (Langebio), CINVESTAV, Km 9.6 Libramiento Norte, Carretera León-Irapuato, CP 36824, Irapuato, Mexico.
| |
Collapse
|
4
|
A Novel Bacillus safensis-Based Formulation along with Mycorrhiza Inoculation for Controlling Alternaria alternata and Simultaneously Improving Growth, Nutrient Uptake, and Steviol Glycosides in Stevia rebaudiana under Field Conditions. PLANTS 2022; 11:plants11141857. [PMID: 35890492 PMCID: PMC9317049 DOI: 10.3390/plants11141857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Revised: 07/12/2022] [Accepted: 07/12/2022] [Indexed: 11/17/2022]
Abstract
The excess use of chemicals by farmers in the agroecosystems degrades soil quality, disturbs soil ecology, and increases soil salinity and health hazards in humans. Stevia rebaudiana is an important medicinal and aromatic crop whose leaves contain steviol glycosides (SGs). The Bacillus safensis NAIMCC-B-02323 strain STJP from the rhizosphere of S. rebaudiana producing salicylic acid (16.80 µg/mL), chitinase (75.58 U/mL), β-1,3-glucanase (220.36 U/mL), and cellulase (170 U/mL) was taken as a plant growth-promoting rhizobacteria (PGPR). The cell-free supernatant (CFS) from strain STJP showed significant biocontrol activity against Alternaria alternata (80%), suggesting the protective role of extracellular metabolite(s) against phytopathogens. Paneer whey-based bioformulation (P-WBF) was developed to exploit B. safensis STJP to enhance the growth, nutrient uptake, soil properties, stevioside content, and SGs biosynthesis in S. rebaudiana under an A. alternata-infested field. The combined treatment of P-WBF and mycorrhiza (Glomus fasciculatum ABTEC) significantly enhanced plant growth parameters after 90 days, in comparison with control. The symbiotic action (P-WBF and mycorrhiza) displayed much better results in terms of chlorophyll a and b (improved by 132.85% and 39.80%, respectively), protein (by 278.75%), flavonoid (by 86.99%), carbohydrate (by 103.84%), antioxidant (by 75.11%), and stevioside (by 120.62%) contents in plants as compared to the untreated set. Further, the augmentation of potassium (by 132.39%), phosphorous (by 94.22%), and zinc (by 111.11%) uptake in plant tissues and soil was also observed by the application of P-WBF and mycorrhiza. The expression of UGT74G1 and UGT85C2 genes related to SG biosynthesis was upregulated (2.7- and 3.2-fold, respectively) in plants treated with P-WBF and mycorrhiza as further confirmed by the accumulation of SGs. The results suggest that the application of P-WBF and mycorrhiza not only provides an ecofriendly and sustainable solution to improve stevioside content in S. rebaudiana by a nutrient-linked mechanism but also paves the way to enhanced production of stevioside.
Collapse
|
5
|
Watts-Williams SJ. Track and trace: how soil labelling techniques have revealed the secrets of resource transport in the arbuscular mycorrhizal symbiosis. MYCORRHIZA 2022; 32:257-267. [PMID: 35596782 PMCID: PMC9184364 DOI: 10.1007/s00572-022-01080-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Accepted: 04/29/2022] [Indexed: 06/15/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi colonise plant roots, and by doing so forge the 'mycorrhizal uptake pathway(s)' (MUP) that provide passageways for the trade of resources across a specialised membrane at the plant-fungus interface. The transport of nutrients such as phosphorus (P), nitrogen and zinc from the fungus, and carbon from the plant, via the MUP have mostly been quantified using stable or radioactive isotope labelling of soil in a specialised hyphae-only compartment. Recent advances in the study of AM fungi have used tracing studies to better understand how the AM association will function in a changing climate, the extent to which the MUP can contribute to P uptake by important crops, and how AM fungi trade resources in interaction with plants, other AM fungi, and friend and foe in the soil microbiome. The existing work together with well-designed future experiments will provide a valuable assessment of the potential for AM fungi to play a role in the sustainability of managed and natural systems in a changing climate.
Collapse
Affiliation(s)
- Stephanie J Watts-Williams
- The Waite Research Institute and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, South Australia, 5064, Australia.
| |
Collapse
|
6
|
Elliott T, Truong C, Jackson S, Zúñiga C, Trappe J, Vernes K. Mammalian mycophagy: A global review of ecosystem interactions between mammals and fungi. Fungal Syst Evol 2022; 9:99-159. [PMID: 36072820 PMCID: PMC9402283 DOI: 10.3114/fuse.2022.09.07] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Accepted: 04/02/2022] [Indexed: 11/07/2022] Open
Abstract
The consumption of fungi by animals is a significant trophic interaction in most terrestrial ecosystems, yet the role mammals play in these associations has been incompletely studied. In this review, we compile 1 154 references published over the last 146 years and provide the first comprehensive global review of mammal species known to eat fungi (508 species in 15 orders). We review experimental studies that found viable fungal inoculum in the scats of at least 40 mammal species, including spores from at least 58 mycorrhizal fungal species that remained viable after ingestion by mammals. We provide a summary of mammal behaviours relating to the consumption of fungi, the nutritional importance of fungi for mammals, and the role of mammals in fungal spore dispersal. We also provide evidence to suggest that the morphological evolution of sequestrate fungal sporocarps (fruiting bodies) has likely been driven in part by the dispersal advantages provided by mammals. Finally, we demonstrate how these interconnected associations are widespread globally and have far-reaching ecological implications for mammals, fungi and associated plants in most terrestrial ecosystems. Citation: Elliott TF, Truong C, Jackson S, Zúñiga CL, Trappe JM, Vernes K (2022). Mammalian mycophagy: a global review of ecosystem interactions between mammals and fungi. Fungal Systematics and Evolution 9: 99-159. doi: 10.3114/fuse.2022.09.07.
Collapse
Affiliation(s)
- T.F. Elliott
- Ecosystem Management, School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia
| | - C. Truong
- Instituto de Biología, Universidad Nacional Autónoma de México, Tercer Circuito s/n, Ciudad Universitaria, 04510 Ciudad de México, Mexico
| | - S.M. Jackson
- Australian Museum Research Institute, Australian Museum, 1 William St., Sydney, NSW 2010, Australia
- School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, NSW 2052, Australia
- Division of Mammals, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013-7012, USA
| | - C.L. Zúñiga
- Instituto de Biología, Universidad Nacional Autónoma de México, Tercer Circuito s/n, Ciudad Universitaria, 04510 Ciudad de México, Mexico
| | - J.M. Trappe
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA
| | - K. Vernes
- Ecosystem Management, School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia
| |
Collapse
|
7
|
Jiang D, Lin R, Tan M, Yan J, Yan S. The mycorrhizal-induced growth promotion and insect resistance reduction in Populus alba × P. berolinensis seedlings: a multi-omics study. TREE PHYSIOLOGY 2022; 42:1059-1069. [PMID: 35022794 DOI: 10.1093/treephys/tpab155] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2021] [Accepted: 11/13/2021] [Indexed: 06/14/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi are an alternative to chemical insecticides or fertilizers, and there is an urgent need to extend the application of AM fungi to woody plants. This study aims to investigate the growth and resistance against the gypsy moth larvae (Lymantria dispar) in Glomus intraradices-colonized Populus alba × P. berolinensis seedlings, and to unravel the transcriptome and metabolome phenotypes recruited by AM fungus colonization that affect plant growth and insect resistance. Our results showed a positive mycorrhizal growth response, i.e., growth and biomass of mycorrhizal seedlings were enhanced. However, AM fungus inoculation reduced the resistance of poplar to gypsy moth larvae, as evidenced by the decreased carbon/nitrogen ratio in leaves, as well as the increased larval growth and shortened larval developmental duration. Transcriptome analysis revealed that in both auxin and gibberellin signaling transductions, all nodes were responsive to AM symbiosis and most differentially expressed genes belonging to effectors were up-regulated in mycorrhizal seedlings. Furthermore, the two key enzymes (4-coumarate-CoA ligase and trans-cinnamate 4-monooxygenase) involved in the synthesis of p-Coumaroyl-CoA, an initial metabolite in flavonoid biosynthesis and the first rate-limiting enzyme (chalcone synthase) in flavonoid biosynthesis, were down-regulated at the transcriptional level. Consistent with the transcriptome results, metabolome analysis found that the amounts of all differentially accumulated flavonoid compounds (e.g., catechin and quercetin) identified in mycorrhizal seedlings were decreased. Taken together, these findings highlight the diverse outcomes of AM fungi-host plant-insect interaction and reveal the regulatory network of the positive mycorrhizal growth response and mycorrhizal-induced reduction of insect resistance in poplar.
Collapse
Affiliation(s)
- Dun Jiang
- Department of Forestry School of Forestry, Northeast Forestry University, 26 Hexing Road, Xiangfang District, Harbin 150040, P. R. China
- College of Forestry Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, 26 Hexing Road, Xiangfang District, Harbin 150040, P. R. China
| | - Ruoxuan Lin
- Department of Economics College of Economics and Management, Northeast Forestry University, 26 Hexing Road, Xiangfang District, Harbin 150040, P. R.China
| | - Mingtao Tan
- Department of Forestry School of Forestry, Northeast Forestry University, 26 Hexing Road, Xiangfang District, Harbin 150040, P. R. China
- College of Forestry Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, 26 Hexing Road, Xiangfang District, Harbin 150040, P. R. China
| | - Junxin Yan
- Department of Landscape Architecture College of Landscape Architecture, Northeast Forestry University, 26 Hexing Road, Xiangfang District, Harbin 150040, P. R. China
| | - Shanchun Yan
- Department of Forestry School of Forestry, Northeast Forestry University, 26 Hexing Road, Xiangfang District, Harbin 150040, P. R. China
- College of Forestry Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, Northeast Forestry University, 26 Hexing Road, Xiangfang District, Harbin 150040, P. R. China
| |
Collapse
|
8
|
Physiological Alteration in Sunflower Plants (Helianthus annuus L.) Exposed to High CO2 and Arbuscular Mycorrhizal Fungi. PLANTS 2021; 10:plants10050937. [PMID: 34066650 PMCID: PMC8150476 DOI: 10.3390/plants10050937] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 05/03/2021] [Accepted: 05/05/2021] [Indexed: 11/17/2022]
Abstract
Sunflower plants (Helianthus annuus L.) in a CO2-enriched atmosphere (eCO2) were used herein to examine the developmental and physiological effects of biofertilization with mycorrhizae (Rhizophagus irregularis). The eCO2 environment stimulated colonization using R. irregularis mycorrhizal fungi, as compared to plants grown under ambient CO2 conditions (aCO2). This colonization promotes plant growth due to an increased nutrient content (P, K, Mg, and B), which favors a greater synthesis of photosynthetic pigments. Biofertilized plants (M) under eCO2 conditions have a higher concentration of carbon compounds in their leaves, as compared to non-biofertilized eCO2 plants (NM). The biofertilization (M) of sunflowers with R. irregularis decreased the C/N ratio, as compared to the NM plants, decreasing the hydrogen peroxide content and increasing the antioxidant enzyme activity (catalase and APX). These results suggest that sunflower symbiosis with R. irregularis improves the absorption of N, while also decreasing the plant’s oxidative stress. It may be concluded that biofertilization with mycorrhizae (R. irregularis) may potentially replace the chemical fertilization of sunflower plants (H. annuus L.), resulting in more environmentally friendly agricultural practices. This information is essential to our understanding of the mechanisms influencing the C and N dynamic in future climate change scenarios, in which high CO2 levels are expected.
Collapse
|