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Duan S, Yan L, Shen Z, Li X, Chen B, Li D, Qin H, Meegahakumbura MK, Wambulwa MC, Gao L, Chen W, Dong Y, Sheng J. Genomic analyses of agronomic traits in tea plants and related Camellia species. FRONTIERS IN PLANT SCIENCE 2024; 15:1449006. [PMID: 39253572 PMCID: PMC11381259 DOI: 10.3389/fpls.2024.1449006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Accepted: 08/07/2024] [Indexed: 09/11/2024]
Abstract
The genus Camellia contains three types of domesticates that meet various needs of ancient humans: the ornamental C. japonica, the edible oil-producing C. oleifera, and the beverage-purposed tea plant C. sinensis. The genomic drivers of the functional diversification of Camellia domesticates remain unknown. Here, we present the genomic variations of 625 Camellia accessions based on a new genome assembly of C. sinensis var. assamica ('YK10'), which consists of 15 pseudo-chromosomes with a total length of 3.35 Gb and a contig N50 of 816,948 bp. These accessions were mainly distributed in East Asia, South Asia, Southeast Asia, and Africa. We profiled the population and subpopulation structure in tea tree Camellia to find new evidence for the parallel domestication of C. sinensis var. assamica (CSA) and C. sinensis var. sinensis (CSS). We also identified candidate genes associated with traits differentiating CSA, CSS, oilseed Camellia, and ornamental Camellia cultivars. Our results provide a unique global view of the genetic diversification of Camellia domesticates and provide valuable resources for ongoing functional and molecular breeding research.
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Affiliation(s)
- Shengchang Duan
- College of Plant Protection, Yunnan Agricultural University, Kunming, China
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming, China
| | - Liang Yan
- College of Tea (Pu'er), West Yunnan University of Applied Sciences, Pu'er, China
- Pu'er Institute of Pu-erh Tea, Pu'er, China
| | - Zongfang Shen
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, China
- Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Science, Kunming, China
- University of Chinese Academy of Science, Beijing, China
| | - Xuzhen Li
- College of Plant Protection, Yunnan Agricultural University, Kunming, China
| | - Baozheng Chen
- College of Food Science and Technology, Yunnan Agricultural University, Kunming, China
| | - Dawei Li
- College of Plant Protection, Yunnan Agricultural University, Kunming, China
| | - Hantao Qin
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, China
- University of Chinese Academy of Science, Beijing, China
| | - Muditha K Meegahakumbura
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, China
- Department of Export Agriculture, Faculty of Animal Science and Export Agriculture, Uva Wellassa University, Badulla, Sri Lanka
| | - Moses C Wambulwa
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, China
- Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Science, Kunming, China
- Department of Life Sciences, School of Science and Computing, South Eastern Kenya University, Kitui, Kenya
| | - Lianming Gao
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, China
- Lijiang Forest Biodiversity National Observation and Research Station, Kunming Institute of Botany, Chinese Academy of Sciences, Lijiang, China
| | - Wei Chen
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming, China
| | - Yang Dong
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming, China
| | - Jun Sheng
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming, China
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Huang X, Liu L, Qiang X, Meng Y, Li Z, Huang F. Integrated Metabolomic and Transcriptomic Profiles Provide Insights into the Mechanisms of Anthocyanin and Carotenoid Biosynthesis in Petals of Medicago sativa ssp. sativa and Medicago sativa ssp. falcata. PLANTS (BASEL, SWITZERLAND) 2024; 13:700. [PMID: 38475545 DOI: 10.3390/plants13050700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 02/16/2024] [Accepted: 02/28/2024] [Indexed: 03/14/2024]
Abstract
The petals of Medicago sativa ssp. sativa and M. sativa ssp. falcata are purple and yellow, respectively. Free hybridization between M. sativa ssp. sativa and M. sativa ssp. falcata has created hybrids with various flower colors in nature. Moreover, the flower colors of alfalfa are closely correlated with yield, nutritional quality, stress tolerance and other agronomic characteristics. To elucidate the underlying mechanisms of flower color formation in M. sativa ssp. sativa and M. sativa ssp. falcata, we conducted an integrative analysis of the transcriptome and metabolome of alfalfa with three different petal colors (purple, yellow and cream). The metabolic profiles suggested that anthocyanins and carotenoids are the crucial pigments in purple and yellow flowers, respectively. A quantitative exploration of the anthocyanin and carotenoid components indicated that the accumulations of cyanidin, delphinidin, peonidin, malvidin, pelargonidin and petunidin derivatives are significantly higher in purple flowers than in cream flowers. In addition, the content of carotenes (phytoene, α-carotene and β-carotene) and xanthophylls (α-cryptoxanthin, lutein, β-cryptoxanthin, zeaxanthin, antheraxanthin and violaxanthin derivatives) was markedly higher in yellow flowers than in cream flowers. Furthermore, we found that delphinidin-3,5-O-diglucoside and lutein were the predominant pigments accumulated in purple and yellow flowers, respectively. The transcriptomic results revealed that twenty-five upregulated structural genes (one C4H, three 4CL, twelve CHS, two CHI, one F3H, one F3'H, one F3'5'H and four DFR) are involved in the accumulation of anthocyanins in purple flowers, and nine structural genes (two PSY, one ZDS, two CRTISO, two BCH, one ZEP and one ECH) exert an effect on the carotenoid biosynthesis pathway in yellow flowers. The findings of this study reveal the underlying mechanisms of anthocyanin and carotenoid biosynthesis in alfalfa with three classic flower colors.
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Affiliation(s)
- Xiuzheng Huang
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 100081, China
| | - Lei Liu
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 100081, China
| | - Xiaojing Qiang
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 100081, China
| | - Yuanfa Meng
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 100081, China
| | - Zhiyong Li
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 100081, China
| | - Fan Huang
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot 100081, China
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Li BJ, Zheng BQ, Wang JY, Tsai WC, Lu HC, Zou LH, Wan X, Zhang DY, Qiao HJ, Liu ZJ, Wang Y. New insight into the molecular mechanism of colour differentiation among floral segments in orchids. Commun Biol 2020; 3:89. [PMID: 32111943 PMCID: PMC7048853 DOI: 10.1038/s42003-020-0821-8] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 02/10/2020] [Indexed: 01/08/2023] Open
Abstract
An unbalanced pigment distribution among the sepal and petal segments results in various colour patterns of orchid flowers. Here, we explored this type of mechanism of colour pattern formation in flowers of the Cattleya hybrid 'KOVA'. Our study showed that pigment accumulation displayed obvious spatiotemporal specificity in the flowers and was likely regulated by three R2R3-MYB transcription factors. Before flowering, RcPAP1 was specifically expressed in the epichile to activate the anthocyanin biosynthesis pathway, which caused substantial cyanin accumulation and resulted in a purple-red colour. After flowering, the expression of RcPAP2 resulted in a low level of cyanin accumulation in the perianths and a pale pink colour, whereas RcPCP1 was expressed only in the hypochile, where it promoted α-carotene and lutein accumulation and resulted in a yellow colour. Additionally, we propose that the spatiotemporal expression of different combinations of AP3- and AGL6-like genes might participate in KOVA flower colour pattern formation.
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Affiliation(s)
- Bai-Jun Li
- State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry, 100091, Beijing, China
| | - Bao-Qiang Zheng
- State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry, 100091, Beijing, China
| | - Jie-Yu Wang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, 510650, Guangzhou, China
| | - Wen-Chieh Tsai
- Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, 701, Tainan City, Taiwan
- Orchid Research and Development Center, National Cheng Kung University, 701, Tainan City, Taiwan
| | - Hsiang-Chia Lu
- Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, 350002, Fuzhou, China
| | - Long-Hai Zou
- State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry, 100091, Beijing, China
- State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, 311300, Lin'an, China
| | - Xiao Wan
- State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry, 100091, Beijing, China
- Research & Development Center of Flower, Zhejiang Academy of Agricultural Sciences, 311202, Hangzhou, China
| | - Di-Yang Zhang
- Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, 350002, Fuzhou, China
| | - Hong-Juan Qiao
- State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry, 100091, Beijing, China
| | - Zhong-Jian Liu
- Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, 350002, Fuzhou, China.
- College of Forestry and Landscape Architecture, South China Agricultural University, 510642, Guangzhou, China.
| | - Yan Wang
- State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry, 100091, Beijing, China.
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Shaheen S, Ahmad R, Mahmood Q, Mubarak H, Mirza N, Hayat MT. Physiology and selected genes expression under cadmium stress in Arundo donax L. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2018; 20:1162-1167. [PMID: 30156924 DOI: 10.1080/15226514.2018.1460312] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The effects of cadmium stress (0, 25, 50, 75, and 100 mg/L) on morpho-physiological features and selected genes (carotenoid hydroxilase, amidase, GR, bHLH, NRAMP and YSL) expression were demonstrated in Arundo donax L. The plants were assessed for Cd uptake and its effects on chlorophyll and antioxidants after 30 days of exposure. The expression of genes conferring metal tolerance was evaluated after 10 days of Cd exposure. The results showed a maximum Cd uptake in roots (872 mg/kg) followed by stem (734 mg/kg) and leaves (298 mg/kg) at highest supplied Cd concentration. The Cd uptake reduced dry weight, Chla, Chlb, and total Chl contents of giant reed. The SOD, CAT, POD activities and MDA content increased at the maximum Cd concentration over control. The highest genes expression for carotenoid hydroxylase, glutathione reductase and amidase was observed in plants exposed to 100 mg/L. However, differential bHLH gene expression and slightly increased gene expression of NRAMP was noted for different Cd treatments. Amidase expressed under Cd stress which is pioneer report in A. donax. These results provided insights into the mechanisms of A. donax tolerance and survival under Cd Stress.
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Affiliation(s)
- Shahida Shaheen
- a Department of Environmental Sciences , COMSATS Institute of Information Technology , Abbottabad , Pakistan
| | - Rafiq Ahmad
- a Department of Environmental Sciences , COMSATS Institute of Information Technology , Abbottabad , Pakistan
| | - Qaisar Mahmood
- a Department of Environmental Sciences , COMSATS Institute of Information Technology , Abbottabad , Pakistan
| | - Hussani Mubarak
- b Department of Soil and Environmental Sciences , Ghazi University , Dera Ghazi Khan , Pakistan
| | - Nosheen Mirza
- a Department of Environmental Sciences , COMSATS Institute of Information Technology , Abbottabad , Pakistan
| | - Malik Tahir Hayat
- a Department of Environmental Sciences , COMSATS Institute of Information Technology , Abbottabad , Pakistan
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Ma G, Zhang L, Yungyuen W, Tsukamoto I, Iijima N, Oikawa M, Yamawaki K, Yahata M, Kato M. Expression and functional analysis of citrus carotene hydroxylases: unravelling the xanthophyll biosynthesis in citrus fruits. BMC PLANT BIOLOGY 2016; 16:148. [PMID: 27358074 PMCID: PMC4928310 DOI: 10.1186/s12870-016-0840-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Accepted: 06/22/2016] [Indexed: 05/03/2023]
Abstract
BACKGROUND Xanthophylls are oxygenated carotenoids and fulfill critical roles in plant growth and development. In plants, two different types of carotene hydroxylases, non-heme di-iron and heme-containing cytochrome P450, were reported to be involved in the biosynthesis of xanthophyll. Citrus fruits accumulate a high amount of xanthophylls, especially β,β-xanthophylls. To date, however, the roles of carotene hydroxylases in regulating xanthophyll content and composition have not been elucidated. RESULTS In the present study, the roles of four carotene hydroxylase genes (CitHYb, CitCYP97A, CitCYP97B, and CitCYP97C) in the biosynthesis of xanthophyll in citrus fruits were investigated. Phylogenetic analysis showed that the four citrus carotene hydroxylases presented in four distinct clusters which have been identified in higher plants. CitHYb was a non-heme di-iron carotene hydroxylase, while CitCYP97A, CitCYP97B, and CitCYP97C were heme-containing cytochrome P450-type carotene hydroxylases. Gene expression results showed that the expression of CitHYb increased in the flavedo and juice sacs during the ripening process, which was well consistent with the accumulation of β,β-xanthophyll in citrus fruits. The expression of CitCYP97A and CitCYP97C increased with a peak in November, which might lead to an increase of lutein in the juice sacs during the ripening process. The expression level of CitCYP97B was much lower than that of CitHYb, CitCYP97A, and CitCYP97C in the juice sacs during the ripening process. Functional analysis showed that the CitHYb was able to catalyze the hydroxylation of the β-rings of β-carotene and α-carotene in Escherichia coli BL21 (DE3) cells. Meanwhile, when CitHYb was co-expressed with CitCYP97C, α-carotene was hydroxylated on the β-ring and ε-ring sequentially to produce lutein. CONCLUSIONS CitHYb was a key gene for β,β-xanthophyll biosynthesis in citrus fruits. CitCYP97C functioned as an ε-ring hydroxylase to produce lutein using zeinoxanthin as a substrate. The results will contribute to elucidating xanthophyll biosynthesis in citrus fruits, and provide new strategies to improve the nutritional and commercial qualities of citrus fruits.
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Affiliation(s)
- Gang Ma
- />Department of Biological and Environmental Sciences, Faculty of Agriculture, Shizuoka University, 836 Ohya, Shizuoka, Suruga 422-8529 Japan
| | - Lancui Zhang
- />Department of Biological and Environmental Sciences, Faculty of Agriculture, Shizuoka University, 836 Ohya, Shizuoka, Suruga 422-8529 Japan
| | - Witchulada Yungyuen
- />Department of Biological and Environmental Sciences, Faculty of Agriculture, Shizuoka University, 836 Ohya, Shizuoka, Suruga 422-8529 Japan
- />The United Graduate school of Agricultural Science, Gifu University (Shizuoka University), Yanagido, Gifu, 501-1193 Japan
| | - Issei Tsukamoto
- />Department of Biological and Environmental Sciences, Faculty of Agriculture, Shizuoka University, 836 Ohya, Shizuoka, Suruga 422-8529 Japan
| | - Natsumi Iijima
- />Department of Biological and Environmental Sciences, Faculty of Agriculture, Shizuoka University, 836 Ohya, Shizuoka, Suruga 422-8529 Japan
| | - Michiru Oikawa
- />Department of Biological and Environmental Sciences, Faculty of Agriculture, Shizuoka University, 836 Ohya, Shizuoka, Suruga 422-8529 Japan
| | - Kazuki Yamawaki
- />Department of Biological and Environmental Sciences, Faculty of Agriculture, Shizuoka University, 836 Ohya, Shizuoka, Suruga 422-8529 Japan
| | - Masaki Yahata
- />Department of Biological and Environmental Sciences, Faculty of Agriculture, Shizuoka University, 836 Ohya, Shizuoka, Suruga 422-8529 Japan
| | - Masaya Kato
- />Department of Biological and Environmental Sciences, Faculty of Agriculture, Shizuoka University, 836 Ohya, Shizuoka, Suruga 422-8529 Japan
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