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Gao YY, Wang Q, Zhang S, Zhao J, Bao D, Zhao H, Wang K, Hu GX, Gao FS. Establishment and preliminary application of duplex fluorescence quantitative PCR for porcine circoviruses type 2 and type 3. Heliyon 2024; 10:e31779. [PMID: 38868040 PMCID: PMC11167290 DOI: 10.1016/j.heliyon.2024.e31779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2023] [Revised: 05/21/2024] [Accepted: 05/22/2024] [Indexed: 06/14/2024] Open
Abstract
Porcine circovirus types 2 (PCV2) and 3 (PCV3) are the two most prevalent porcine circoviruses in China, all of which can infect swine herds and cause serious diseases. To detect coinfection with PCV2 and PCV3, primers and probes for duplex PCV2 and PCV3 real-time PCR were designed to target their cap genes based on the constructed plasmids pUC57-PCV2 and pUC57-PCV3. The established duplex PCV2 and PCV3 real-time PCRs were specific to PCV2 and PCV3 and showed no cross-reactions with other porcine viral pathogens. The limit of detection was 5 and 50 copies for the PCV2 and PCV3 plasmids, respectively. The intra- and interassay repeatability had coefficients of variation below 3 %. The established methods were used to analyze clinical samples from Liaoning and Jilin provinces of China. The coinfection rates of PCV2 and PCV3 in pigs extensively fed in Liaoning and Jilin, large-scale farmed pigs in Liaoning and large-scale farmed pigs in Jilin were 15.0 % (6/40), 36.7 % (11/30) and 35.4 % (62/175), respectively. This study established a useful duplex PCV2 and PCV3 real-time PCR method that can be used for the detection of PCV2 and PCV3 in local clinical samples.
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Affiliation(s)
- Yong-Yu Gao
- College of Animal Medicine, Jilin Agricultural University, Changchun, 130118, China
| | - Qian Wang
- The Third Affiliated Hospital of Changchun University of Traditional Chinese Medicine, Changchun, Jilin, 130117, China
| | - Shuang Zhang
- College of Animal Medicine, Jilin Agricultural University, Changchun, 130118, China
| | - Jian Zhao
- ChangChun Sino Biotechnology CO., LTD., Changchun, Jilin, 130012, China
| | - Di Bao
- College of Animal Medicine, Jilin Agricultural University, Changchun, 130118, China
| | - Han Zhao
- College of Animal Medicine, Jilin Agricultural University, Changchun, 130118, China
| | - Kai Wang
- College of Animal Medicine, Jilin Agricultural University, Changchun, 130118, China
| | - Gui-Xue Hu
- College of Animal Medicine, Jilin Agricultural University, Changchun, 130118, China
| | - Feng-Shan Gao
- College of Life and Health, Dalian University, Dalian, 116622, China
- The Dalian Animal Virus Antigen Epitope Screening and Protein Engineering Drug Developing Key Laboratory, Dalian, 116622, China
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Molini U, Coetzee LM, Christians V, Hemberger MY, Chiwome B, Amukwaya M, Khaiseb S, Cattoli G, Dundon WG, Franzo G. High detection frequency and genetic diversity of porcine circovirus 3 (PCV-3) in Namibian backyard farms and warthogs. Acta Trop 2024; 249:107085. [PMID: 38016512 DOI: 10.1016/j.actatropica.2023.107085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 11/02/2023] [Accepted: 11/25/2023] [Indexed: 11/30/2023]
Abstract
Since its first identification in 2015, porcine circovirus 3 (PCV-3) has been reported worldwide with a high frequency and in the presence of several clinical conditions, although its impact on pig health and productivity is still debated. Data on the presence of PCV-3 in Africa are, however, limited. A previous study performed on commercial pigs in Namibia failed to identify the pathogen. In the present study, the viral circulation in backyard farms, characterised by lower biosecurity measures and frequent animal exchange between farms, was assessed. The susceptibility of warthogs to PCV-3 infection and their potential epidemiological role were also evaluated. Tonsils from 77 pigs from backyard piggeries and 55 warthogs were collected in different regions of Namibia and tested by PCR. Positive samples were sequenced and compared to PCV-3 strains circulating globally. Forty-two out of 77 pigs (54.54 %) and 12 out of 55 warthogs (21.82 %) tested positive, demonstrating the presence of PCV-3 in the country and suggesting that the high biosecurity measures implemented in the commercial farms that previously tested negative for PCV-3 probably prevented viral introduction. The partial ORF2 gene was successfully sequenced in samples from 27 pigs and 6 warthogs. Genetically, the identified strains were part of 3 distinct groups which included both backyard pigs and warthogs from different regions of Namibia. There is also evidence for the occurrence of multiple introduction events most likely from Asian countries, either directly into Namibia or through other African countries. Considering the strict Namibian regulations on live animal importation, understanding the source of viral introduction is challenging, although semen importation or the habit of feeding backyard pigs with human food waste might have played a role. Pig exchanges between farms for breeding purposes or wildlife movements could also have been involved in PCV-3 dispersal within Namibia. Despite the significant advances in the field, further studies should be undertaken to properly understand PCV-3 epidemiology in Namibia and its impact on pig productivity and wildlife health.
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Affiliation(s)
- Umberto Molini
- Faculty of Health Sciences and Veterinary Medicine, School of Veterinary Medicine, Neudamm Campus, University of Namibia, Private Bag 13301, Windhoek 9000, Namibia
| | - Lauren M Coetzee
- Central Veterinary Laboratory (CVL), 24 Goethe Street, Private Bag 18137, Windhoek 9000, Namibia; Faculty of Veterinary Medicine, University of Teramo, Teramo 64100, Italy
| | - Vernon Christians
- Faculty of Health Sciences and Veterinary Medicine, School of Veterinary Medicine, Neudamm Campus, University of Namibia, Private Bag 13301, Windhoek 9000, Namibia
| | - Maria Y Hemberger
- Faculty of Health Sciences and Veterinary Medicine, School of Veterinary Medicine, Neudamm Campus, University of Namibia, Private Bag 13301, Windhoek 9000, Namibia
| | - Bernard Chiwome
- Faculty of Health Sciences and Veterinary Medicine, School of Veterinary Medicine, Neudamm Campus, University of Namibia, Private Bag 13301, Windhoek 9000, Namibia
| | - Maria Amukwaya
- Faculty of Health Sciences and Veterinary Medicine, School of Veterinary Medicine, Neudamm Campus, University of Namibia, Private Bag 13301, Windhoek 9000, Namibia
| | - Siegfried Khaiseb
- Central Veterinary Laboratory (CVL), 24 Goethe Street, Private Bag 18137, Windhoek 9000, Namibia
| | - Giovanni Cattoli
- Department of Nuclear Sciences and Applications, Joint FAO/IAEA Division, Animal Production and Health Laboratory, Animal Production and Health Section, International Atomic Energy Agency, P.O. Box 100, Vienna 1400, Austria
| | - William G Dundon
- Department of Nuclear Sciences and Applications, Joint FAO/IAEA Division, Animal Production and Health Laboratory, Animal Production and Health Section, International Atomic Energy Agency, P.O. Box 100, Vienna 1400, Austria
| | - Giovanni Franzo
- Department. of Animal Medicine, Production and Health, University of Padova, viale dell'Università 16, Legnaro 35020, Italy.
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Detection and Complete Genomic Analysis of Porcine circovirus 3 (PCV3) in Diarrheic Pigs from the Dominican Republic: First Report on PCV3 from the Caribbean Region. Pathogens 2023; 12:pathogens12020250. [PMID: 36839522 PMCID: PMC9959359 DOI: 10.3390/pathogens12020250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Revised: 01/30/2023] [Accepted: 01/31/2023] [Indexed: 02/09/2023] Open
Abstract
The increasing detection of Porcine circovirus 3 (PCV3, family Circoviridae) in clinically ill pigs worldwide has raised concerns on the implications of the virus on porcine health and the pork industry. Although pork production constitutes an important component of the livestock economy and is a major source of animal protein in the Caribbean Islands, there are no reports on PCV3 in pigs from the region so far. In the present study, PCV3 was detected in 21% (21/100) of diarrheic pigs (sampled at three farms) from the Caribbean nation of the Dominican Republic (DR). Although the sample size varied between porcine age groups, the highest PCV3 detection rates (35.3% each, respectively) were observed in piglets and growers. Co-infections with PCV2 and porcine adenovirus were observed in 38.09% and 9.52% of the PCV3 positive samples, respectively. The complete genomes of 11 DR PCV3 strains were analyzed in the present study, revealing a unique deletion (corresponding to nucleotide residue at position 1165 of reference PCV3 sequences) in one of the DR PCV3 sequences. Based on sequence identities and phylogenetic analysis (open reading frame 2 and complete genome sequences), the DR PCV3 strains were assigned to genotype PCV3a, and shared high sequence homologies (>98% identities) between themselves and with those of other PCV3a (Clade-1) strains, corroborating previous observations on the genetic stability of PCV3 worldwide. To our knowledge, this is the first report on the detection and molecular characterization of PCV3 in pigs from the Caribbean region, providing important insights into the expanding global distribution of the virus, even in isolated geographical regions (the Island of Hispaniola). Our findings warrant further investigations on the molecular epidemiology and economic implications of PCV3 in pigs with diarrhea and other clinical conditions across the Caribbean region.
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Cui Y, Hou L, Pan Y, Feng X, Zhou J, Wang D, Guo J, Liu C, Shi Y, Sun T, Yang X, Zhu N, Tong X, Wang Y, Liu J. Reconstruction of the Evolutionary Origin, Phylodynamics, and Phylogeography of the Porcine Circovirus Type 3. Front Microbiol 2022; 13:898212. [PMID: 35663871 PMCID: PMC9158500 DOI: 10.3389/fmicb.2022.898212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 04/19/2022] [Indexed: 11/13/2022] Open
Abstract
Porcine circovirus type 3 (PCV3) is a newly identified virus associated with porcine dermatitis and nephropathy syndrome (PDNS) and multisystemic inflammatory responses in pigs. Recent studies suggests that PCV3 originated from bat circoviruses; however, the origin time, mode of spread, and geographic distribution of PCV3 remain unclear. In this study, the evolutionary origin, phylodynamics, and phylogeography of PCV3 were reconstructed based on the available complete genome sequences. PCV3 showed a closer relationship with bird circovirus than with bat circovirus, but their common ancestor was bat circovirus, indicating that birds may be intermediate hosts for the spread of circoviruses in pigs. Using the BEAST and phylogenetic analyses, three different clades of PCV3 (PCV3a, PCV3b, and PCV3c) were identified, with PCV3a being the most prevalent PCV3 clade. Further studies indicated that the earliest origin of PCV3 can be traced back to 1907.53–1923.44, with a substitution rate of 3.104 × 10–4 to 6.8524 × 10–4 substitution/site/year. A phylogeographic analysis highlighted Malaysia as the earliest location of the original PCV3, which migrated to Asia, America, and Europe. Overall, this study provides novel insights into the evolutionary origin, spread mode, and geographic distribution of PCV3, which will facilitate the prevention and control of PCV3 epidemics in the future.
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Affiliation(s)
- Yongqiu Cui
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Lei Hou
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Yang Pan
- College of Animal Science and Technology, Anhui Agricultural University, Hefei, China
| | - Xufei Feng
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Jianwei Zhou
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Dedong Wang
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Jinshuo Guo
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Changzhe Liu
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Yongyan Shi
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Tong Sun
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Xiaoyu Yang
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Ning Zhu
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Xinxin Tong
- College of Animal Science and Technology, Anhui Agricultural University, Hefei, China
| | - Yongxia Wang
- College of Animal Science and Technology, Anhui Agricultural University, Hefei, China
| | - Jue Liu
- College of Veterinary Medicine, Yangzhou University, Yangzhou, China.,Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
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Wang D, Mai J, Yang Y, Xiao CT, Wang N. Current knowledge on epidemiology and evolution of novel porcine circovirus 4. Vet Res 2022; 53:38. [PMID: 35642044 PMCID: PMC9158299 DOI: 10.1186/s13567-022-01053-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Accepted: 03/10/2022] [Indexed: 11/15/2022] Open
Abstract
Porcine circovirus type 4 (PCV4) is a newly emerging virus, with both PCV4 genomic DNA and specific antibodies detected in swine herds in several provinces in China and South Korea. Although the virus was first identified in 2019 in Hunan, China, retrospective research suggests that serum samples collected as early as 2008 were positive for PCV4 antibody. Infections with only PCV4 or co-infections with other pathogens have been associated with several clinical manifestations, but its pathogenesis remains to be determined. The purpose of this review was the following: (1) to characterize PCV4 epidemiology by assessing evolutionary dynamics and genetic diversity of PCV4 strains circulating in swine herds; (2) to reconstruct a computerized 3D model to analyze PCV4 Cap properties; (3) and to summarize the current evidence of PCV4-associated clinical-pathological manifestations. The origin of PCV4 is apparently distinct from other PCV, based on analysis of phylogenetic trees. Of note, PCV4 shares an ancient common ancestor with mink circoviruses. Furthermore, the amino acid residue at position 27 of the PCV4 Cap is a key benchmark to distinguish PCV4a (27S) from PCV4b (27 N), based on PCV4 strains currently available, and variation of this residue may alter Cap antigenicity. In addition, the capsid surface of PCV4 has characteristics of increased polar residues, compared to PCV2, which raises the possibility that PCV4 may target negatively charged host receptors to promote virus infection. Further studies are required, including virus isolation and culture, and more detailed characterization of molecular epidemiology and genetic diversity of PCV4 in swine herds.
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Affiliation(s)
- Dongliang Wang
- Hunan Provincial Key Laboratory of Protein Engineering in Animal Vaccines, Laboratory of Functional Proteomics (LFP), Research Center of Reverse Vaccinology (RCRV), College of Veterinary Medicine, Hunan Agricultural University, Changsha, 410128, China
| | - Jinhui Mai
- Hunan Provincial Key Laboratory of Protein Engineering in Animal Vaccines, Laboratory of Functional Proteomics (LFP), Research Center of Reverse Vaccinology (RCRV), College of Veterinary Medicine, Hunan Agricultural University, Changsha, 410128, China
| | - Yi Yang
- Hunan Provincial Key Laboratory of Protein Engineering in Animal Vaccines, Laboratory of Functional Proteomics (LFP), Research Center of Reverse Vaccinology (RCRV), College of Veterinary Medicine, Hunan Agricultural University, Changsha, 410128, China
| | - Chao-Ting Xiao
- Institute of Pathogen Biology and Immunology, College of Biology, Hunan University, Changsha, China.
| | - Naidong Wang
- Hunan Provincial Key Laboratory of Protein Engineering in Animal Vaccines, Laboratory of Functional Proteomics (LFP), Research Center of Reverse Vaccinology (RCRV), College of Veterinary Medicine, Hunan Agricultural University, Changsha, 410128, China.
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Zhang M, Liu CC, Huang Y, Hill JE, Araya MB, Ojkic D, Gagnon CA. Phylogenetic analysis of porcine circovirus 3 circulating in Canadian pigs. Vet Med Sci 2022; 8:1969-1974. [PMID: 35636428 PMCID: PMC9514502 DOI: 10.1002/vms3.851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Introduction Porcine circovirus 3 (PCV3) has been detected in pigs worldwide and associated with several clinical signs. Methods To investigate the genetic diversity of PCV3 strains circulating in Canada, 44 PCV3 positive samples from Saskatchewan (2/44), Manitoba (2/44), Quebec (4/44), Alberta (11/44) and Ontario (25/44) submitted to diagnostic laboratories in Canada between 2019 and 2021 were sequenced and analyzed. Results Phylogenetic analysis of capsid genes showed that all of the 44 Canadian strains classified into PCV3a and segregated into seven lineages with common amino acid changes observed at A24V, R27K, N56D, T77S, Q98R, L150I (F) and R168K positions. Conclusion Future studies are required to determine whether the polymorphisms in capsid proteins, as revealed in this study, could be associated with differences in the pathogenicity or antigenicity of PCV3 strains. This is the first phylogenetic analysis of PCV3 strains among different provinces in Canada.
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Affiliation(s)
- Maodong Zhang
- Prairie Diagnostic Services Inc. Saskatoon Saskatchewan Canada
- Department of Veterinary Pathology, Western College of Veterinary Medicine University of Saskatchewan Saskatoon Saskatchewan Canada
| | - Chao Chun Liu
- Department of Molecular Biology and Biochemistry Simon Fraser University Burnaby British Columbia Canada
| | - Yanyun Huang
- Prairie Diagnostic Services Inc. Saskatoon Saskatchewan Canada
- Department of Veterinary Pathology, Western College of Veterinary Medicine University of Saskatchewan Saskatoon Saskatchewan Canada
| | - Janet E. Hill
- Department of Veterinary Microbiology, Western College of Veterinary Medicine University of Saskatchewan Saskatoon Saskatchewan Canada
| | | | - Davor Ojkic
- Animal Health Laboratory University of Guelph Guelph Ontario Canada
| | - Carl A. Gagnon
- Molecular Diagnostic Laboratory of Centre de Diagnostic Vétérinaire de universitas de Montréal (CDVUM) and Swine and Poultry Infectious Diseases Research Center (CRIPA‐FRQNT), Faculté de Médecine Vétérinaire Université de Montréal Saint‐Hyacinthe Quebec Canada
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Five years of porcine circovirus 3: what have we learned about the clinical disease, immune pathogenesis, and diagnosis. Virus Res 2022; 314:198764. [DOI: 10.1016/j.virusres.2022.198764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 03/25/2022] [Accepted: 03/26/2022] [Indexed: 11/24/2022]
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