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Chen M, Li Y, Liu H, Zhang D, Guo Y, Shi QS, Xie X. Lignin hydrogenolysis: Tuning the reaction by lignin chemistry. Int J Biol Macromol 2024; 279:135169. [PMID: 39218172 DOI: 10.1016/j.ijbiomac.2024.135169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Revised: 08/22/2024] [Accepted: 08/27/2024] [Indexed: 09/04/2024]
Abstract
Replacing fossil resource with biomass is one of the promising approaches to reduce our carbon footprint. Lignin is one of the three major components of lignocellulosic biomass, accounting for 10-35 wt% of dried weight of the biomass. Hydrogenolytic depolymerization of lignin is attracting increasing attention because of its capacity of utilizing lignin in its uncondensed form and compatibility with the biomass fractionation processes. Lignin is a natural aromatic polymer composed of a variety of monolignols associated with a series of lignin linkage motifs. Hydrogenolysis cleaves various ether bonds in lignin and releases phenolic monomers which can be further upgraded into valuable products, i.e., drugs, terephthalic acid, phenol. This review provides an overview of the state-of-the-art advances of the reagent (lignin), products (hydrol lignin), mass balance, and mechanism of the lignin hydrogenolysis reaction. The chemical structure of lignin is reviewed associated with the free radical coupling of monolignols and the chemical reactions of lignin upon isolation processes. The reactions of lignin linkages upon hydrogenolysis are discussed. The components of hydrol lignin and the selectivity production of phenolic monomers are reviewed. Future challenges on hydrogenolysis of lignin are proposed. This article provides an overview of lignin hydrogenolysis reaction which shows light on the generation of optimized lignin ready for hydrogenolytic depolymerization.
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Affiliation(s)
- Mingjie Chen
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, 100 Central Xianlie Road, Guangzhou, 510070, China; Liaoning Key Lab of Lignocellulose Chemistry and BioMaterials, Liaoning Collaborative Innovation Center for Lignocellulosic Biorefinery, College of Light Industry and Chemical Engineering, Dalian Polytechnic University, Dalian 116034, China; Guangdong Dimei New Materials Technology Co. Ltd., 100 Central Xianlie Road, Guangzhou, 510070, China
| | - Yan Li
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, 100 Central Xianlie Road, Guangzhou, 510070, China; Liaoning Key Lab of Lignocellulose Chemistry and BioMaterials, Liaoning Collaborative Innovation Center for Lignocellulosic Biorefinery, College of Light Industry and Chemical Engineering, Dalian Polytechnic University, Dalian 116034, China
| | - Huiming Liu
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, 100 Central Xianlie Road, Guangzhou, 510070, China
| | - Dandan Zhang
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, 100 Central Xianlie Road, Guangzhou, 510070, China
| | - Yanzhu Guo
- Liaoning Key Lab of Lignocellulose Chemistry and BioMaterials, Liaoning Collaborative Innovation Center for Lignocellulosic Biorefinery, College of Light Industry and Chemical Engineering, Dalian Polytechnic University, Dalian 116034, China.
| | - Qing-Shan Shi
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, 100 Central Xianlie Road, Guangzhou, 510070, China.
| | - Xiaobao Xie
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, 100 Central Xianlie Road, Guangzhou, 510070, China.
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Tian Y, Gao Y, Turumtay H, Turumtay EA, Chai YN, Choudhary H, Park JH, Wu CY, De Ben CM, Dalton J, Louie KB, Harwood T, Chin D, Vuu KM, Bowen BP, Shih PM, Baidoo EEK, Northen TR, Simmons BA, Hutmacher R, Atim J, Putnam DH, Scown CD, Mortimer JC, Scheller HV, Eudes A. Engineered reduction of S-adenosylmethionine alters lignin in sorghum. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2024; 17:128. [PMID: 39407217 PMCID: PMC11481400 DOI: 10.1186/s13068-024-02572-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Accepted: 09/15/2024] [Indexed: 10/19/2024]
Abstract
BACKGROUND Lignin is an aromatic polymer deposited in secondary cell walls of higher plants to provide strength, rigidity, and hydrophobicity to vascular tissues. Due to its interconnections with cell wall polysaccharides, lignin plays important roles during plant growth and defense, but also has a negative impact on industrial processes aimed at obtaining monosaccharides from plant biomass. Engineering lignin offers a solution to this issue. For example, previous work showed that heterologous expression of a coliphage S-adenosylmethionine hydrolase (AdoMetase) was an effective approach to reduce lignin in the model plant Arabidopsis. The efficacy of this engineering strategy remains to be evaluated in bioenergy crops. RESULTS We studied the impact of expressing AdoMetase on lignin synthesis in sorghum (Sorghum bicolor L. Moench). Lignin content, monomer composition, and size, as well as biomass saccharification efficiency were determined in transgenic sorghum lines. The transcriptome and metabolome were analyzed in stems at three developmental stages. Plant growth and biomass composition was further evaluated under field conditions. Results evidenced that lignin was reduced by 18% in the best transgenic line, presumably due to reduced activity of the S-adenosylmethionine-dependent O-methyltransferases involved in lignin synthesis. The modified sorghum features altered lignin monomer composition and increased lignin molecular weights. The degree of methylation of glucuronic acid on xylan was reduced. These changes enabled a ~20% increase in glucose yield after biomass pretreatment and saccharification compared to wild type. RNA-seq and untargeted metabolomic analyses evidenced some pleiotropic effects associated with AdoMetase expression. The transgenic sorghum showed developmental delay and reduced biomass yields at harvest, especially under field growing conditions. CONCLUSIONS The expression of AdoMetase represents an effective lignin engineering approach in sorghum. However, considering that this strategy potentially impacts multiple S-adenosylmethionine-dependent methyltransferases, adequate promoters for fine-tuning AdoMetase expression will be needed to mitigate yield penalty.
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Affiliation(s)
- Yang Tian
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
| | - Yu Gao
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
| | - Halbay Turumtay
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
- Department of Energy System Engineering, Karadeniz Technical University, 61830, Trabzon, Turkey
| | - Emine Akyuz Turumtay
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
- Department of Chemistry, Recep Tayyip Erdogan University, 53100, Rize, Turkey
| | - Yen Ning Chai
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
| | - Hemant Choudhary
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Department of Bioresource and Environmental Security, Sandia National Laboratories, Livermore, CA, 94550, USA
| | - Joon-Hyun Park
- Forage Genetics International, West Salem, WI, 54669, USA
| | - Chuan-Yin Wu
- Forage Genetics International, West Salem, WI, 54669, USA
| | - Christopher M De Ben
- Department of Plant Sciences, University of California-Davis, Davis, CA, 95616, USA
| | - Jutta Dalton
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
| | - Katherine B Louie
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
- Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Thomas Harwood
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
- Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Dylan Chin
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Rausser College of Natural Resources, University of California-Berkeley, Berkeley, CA, 94720, USA
| | - Khanh M Vuu
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
| | - Benjamin P Bowen
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
- Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Patrick M Shih
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
- Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, 94720, USA
| | - Edward E K Baidoo
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Trent R Northen
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
- Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Blake A Simmons
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Robert Hutmacher
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- University of California, Agriculture and Natural Resources, Kearney Agricultural Research and Extension Center, Parlier, CA, 93648, USA
| | - Jackie Atim
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- University of California, Agriculture and Natural Resources, Kearney Agricultural Research and Extension Center, Parlier, CA, 93648, USA
| | - Daniel H Putnam
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Department of Plant Sciences, University of California-Davis, Davis, CA, 95616, USA
| | - Corinne D Scown
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
- Energy & Biosciences Institute, University of California-Berkeley, Berkeley, CA, 94720, USA
- Energy Analysis and Environmental Impacts Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Jenny C Mortimer
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
- School of Agriculture, Food, and Wine, University of Adelaide, Glen Osmond, South Australia, Australia
| | - Henrik V Scheller
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA
- Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, 94720, USA
| | - Aymerick Eudes
- Joint BioEnergy Institute, Emeryville, CA, 94608, USA.
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA.
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Zhang C, Liu J, He Y, Wen J, Yuan TQ. Unveiling the Structural Characteristics of Lignin and Lignin-Carbohydrate Complexes in Fibers and Parenchyma Cells of Moso Bamboo during Different Growing Years. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:20537-20546. [PMID: 39231308 DOI: 10.1021/acs.jafc.4c04010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/06/2024]
Abstract
Understanding and recognizing the structural characteristics of lignin-carbohydrate complexes (LCCs) and lignin in different growth stages and tissue types of bamboo will facilitate industrial processes and practical applications of bamboo biomass. Herein, the LCC and lignin samples were sequentially isolated from fibers and parenchyma cells of bamboo with different growth ages. The diverse yields of sequential fractions not only reflect the different biomass recalcitrance between bamboo fibers and parenchyma cells but also uncover the structural heterogeneity of these tissues at different growth stages. The molecular structures and structural inhomogeneities of the isolated lignin and LCC samples were comprehensively investigated. The results showed that the structural features of lignin and LCC linkages in parenchyma cells were abundant in β-O-4 linkages but less with carbon-carbon linkages, suggesting that lignin and cross-linked LCC in parenchyma cells are simple in nature and easily to be tamed and tractable in the current biorefinery. Parallelly, the different ball-milled samples were directly characterized by high-resolution (800 M) solution-state 2D-HSQC NMR to analyze the whole lignocellulosic material. Overall, the scheme presented in this study will provide a comprehensive understanding of lignin and LCC linkages in fibers and parenchyma cells of bamboo and enable the utilization of bamboo biomass.
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Affiliation(s)
- Chen Zhang
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Jing Liu
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Yanrong He
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Jialong Wen
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Tong-Qi Yuan
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
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Bourmaud CL, Bertella S, Bosch Rico A, Karlen SD, Ralph J, Luterbacher JS. Quantification of Native Lignin Structural Features with Gel-Phase 2D-HSQC 0 Reveals Lignin Structural Changes During Extraction. Angew Chem Int Ed Engl 2024; 63:e202404442. [PMID: 38738591 DOI: 10.1002/anie.202404442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 05/02/2024] [Accepted: 05/08/2024] [Indexed: 05/14/2024]
Abstract
Our ability to study and valorize the lignin fraction of biomass is hampered by the fundamental and still unmet challenge of precisely quantifying native lignin's structural features. Here, we developed a rapid elevated-temperature 1H-13C Heteronuclear Single-Quantum Coherence Zero (HSQC0) NMR method that enables this precise quantification of native lignin structural characteristics even with whole plant cell wall (WPCW) NMR spectroscopy, overcoming fast spin relaxation in the gel phase. We also formulated a Gaussian fitting algorithm to perform automatic and reliable spectral integration. By combining HSQC0 measurements with yield measurements following depolymerisation, we can confirm the combinatorial nature of radical coupling reactions during biosynthesis leading to a random sequential organization of linkages within a largely linear lignin chain. Such analyses illustrate how this analytical method can greatly facilitate the study of native lignin structure, which can then be used for fundamental studies or to understand lignin depolymerization methods like reductive catalytic fractionation or aldehyde-assisted fractionation.
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Affiliation(s)
- Claire L Bourmaud
- Laboratory of Sustainable and Catalytic Processing, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland
| | - Stefania Bertella
- Laboratory of Sustainable and Catalytic Processing, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland
| | - Anna Bosch Rico
- Laboratory of Sustainable and Catalytic Processing, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland
| | - Steven D Karlen
- U.S. Department of Energy (DOE) Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI 53726, USA
| | - John Ralph
- U.S. Department of Energy (DOE) Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI 53726, USA
- Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA
| | - Jeremy S Luterbacher
- Laboratory of Sustainable and Catalytic Processing, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland
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Unda F, de Vries L, Karlen SD, Rainbow J, Zhang C, Bartley LE, Kim H, Ralph J, Mansfield SD. Enhancing monolignol ferulate conjugate levels in poplar lignin via OsFMT1. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2024; 17:97. [PMID: 39003470 PMCID: PMC11246582 DOI: 10.1186/s13068-024-02544-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2024] [Accepted: 06/25/2024] [Indexed: 07/15/2024]
Abstract
BACKGROUND The phenolic polymer lignin is one of the primary chemical constituents of the plant secondary cell wall. Due to the inherent plasticity of lignin biosynthesis, several phenolic monomers have been shown to be incorporated into the polymer, as long as the monomer can undergo radicalization so it can participate in coupling reactions. In this study, we significantly enhance the level of incorporation of monolignol ferulate conjugates into the lignin polymer to improve the digestibility of lignocellulosic biomass. RESULTS Overexpression of a rice Feruloyl-CoA Monolignol Transferase (FMT), OsFMT1, in hybrid poplar (Populus alba x grandidentata) produced transgenic trees clearly displaying increased cell wall-bound ester-linked ferulate, p-hydroxybenzoate, and p-coumarate, all of which are in the lignin cell wall fraction, as shown by NMR and DFRC. We also demonstrate the use of a novel UV-Vis spectroscopic technique to rapidly screen plants for the presence of both ferulate and p-hydroxybenzoate esters. Lastly we show, via saccharification assays, that the OsFMT1 transgenic p oplars have significantly improved processing efficiency compared to wild-type and Angelica sinensis-FMT-expressing poplars. CONCLUSIONS The findings demonstrate that OsFMT1 has a broad substrate specificity and a higher catalytic efficiency compared to the previously published FMT from Angelica sinensis (AsFMT). Importantly, enhanced wood processability makes OsFMT1 a promising gene to optimize the composition of lignocellulosic biomass.
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Affiliation(s)
- Faride Unda
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, The Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, 53726, USA
| | - Lisanne de Vries
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, The Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, 53726, USA
| | - Steven D Karlen
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, The Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, 53726, USA
- Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - Jordan Rainbow
- Institute of Biological Chemistry, Washington State University, Pullman, WA, 99164, USA
| | - Chengcheng Zhang
- Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA
| | - Laura E Bartley
- Institute of Biological Chemistry, Washington State University, Pullman, WA, 99164, USA
| | - Hoon Kim
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, The Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, 53726, USA
- US Department of Agriculture (USDA), Forest Service, Forest Products Laboratory (FPL), Madison, WI, 53726, USA
| | - John Ralph
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, The Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, 53726, USA
- Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - Shawn D Mansfield
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, The Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI, 53726, USA.
- Botany Department, Faculty of Science, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.
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Umezawa T. Metabolic engineering of Oryza sativa for lignin augmentation and structural simplification. PLANT BIOTECHNOLOGY (TOKYO, JAPAN) 2024; 41:89-101. [PMID: 39463768 PMCID: PMC11500570 DOI: 10.5511/plantbiotechnology.24.0131a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Accepted: 01/31/2024] [Indexed: 10/29/2024]
Abstract
The sustainable production and utilization of lignocellulose biomass are indispensable for establishing sustainable societies. Trees and large-sized grasses are the major sources of lignocellulose biomass, while large-sized grasses greatly surpass trees in terms of lignocellulose biomass productivity. With an overall aim to improve lignocellulose usability, it is important to increase the lignin content and simplify lignin structures in biomass plants via lignin metabolic engineering. Rice (Oryza sativa) is not only a representative and important grass crop, but also is a model for large-sized grasses in biotechnology. This review outlines progress in lignin metabolic engineering in grasses, mainly rice, including characterization of the lignocellulose properties, the augmentation of lignin content and the simplification of lignin structures. These findings have broad applicability for the metabolic engineering of lignin in large-sized grass biomass plants.
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Affiliation(s)
- Toshiaki Umezawa
- Research Institute for Sustainable Humanosphere, Kyoto University
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Lam LPY, Lui ACW, Bartley LE, Mikami B, Umezawa T, Lo C. Multifunctional 5-hydroxyconiferaldehyde O-methyltransferases (CAldOMTs) in plant metabolism. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:1671-1695. [PMID: 38198655 DOI: 10.1093/jxb/erae011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 01/09/2024] [Indexed: 01/12/2024]
Abstract
Lignin, flavonoids, melatonin, and stilbenes are plant specialized metabolites with diverse physiological and biological functions, supporting plant growth and conferring stress resistance. Their biosynthesis requires O-methylations catalyzed by 5-hydroxyconiferaldehyde O-methyltransferase (CAldOMT; also called caffeic acid O-methyltransferase, COMT). CAldOMT was first known for its roles in syringyl (S) lignin biosynthesis in angiosperm cell walls and later found to be multifunctional. This enzyme also catalyzes O-methylations in flavonoid, melatonin, and stilbene biosynthetic pathways. Phylogenetic analysis indicated the convergent evolution of enzymes with OMT activities towards the monolignol biosynthetic pathway intermediates in some gymnosperm species that lack S-lignin and Selaginella moellendorffii, a lycophyte which produces S-lignin. Furthermore, neofunctionalization of CAldOMTs occurred repeatedly during evolution, generating unique O-methyltransferases (OMTs) with novel catalytic activities and/or accepting novel substrates, including lignans, 1,2,3-trihydroxybenzene, and phenylpropenes. This review summarizes multiple aspects of CAldOMTs and their related proteins in plant metabolism and discusses their evolution, molecular mechanism, and roles in biorefineries, agriculture, and synthetic biology.
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Affiliation(s)
- Lydia Pui Ying Lam
- Graduate School of Engineering Science, Akita University, Tegata Gakuen-machi 1-1, Akita City, Akita 010-0852, Japan
| | - Andy C W Lui
- Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA
| | - Laura E Bartley
- Institute of Biological Chemistry, Washington State University, Pullman, WA 99164, USA
| | - Bunzo Mikami
- Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan
| | - Toshiaki Umezawa
- Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan
| | - Clive Lo
- School of Biological Sciences, The University of Hong Kong, Pokfulam, Hong Kong, China
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Benito J, Marques G, Rosado MJ, Barro F, Gutiérrez A, Del Río JC, Rencoret J. Tritordeum, a hybrid cereal with a highly tricin-enriched lignin. Int J Biol Macromol 2024; 261:129694. [PMID: 38281525 DOI: 10.1016/j.ijbiomac.2024.129694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 01/09/2024] [Accepted: 01/21/2024] [Indexed: 01/30/2024]
Abstract
The lignin from tritordeum straw, a hybrid cereal from crossbreeding of durum wheat and wild barley, was isolated and chemically characterized. Its composition and structure were studied by analytical pyrolysis (Py-GC/MS), nuclear magnetic resonance spectroscopy (NMR), Derivatization Followed by Reductive Cleavage (DFRC) method, and gel permeation chromatography (GPC). The data revealed an enrichment of guaiacyl (G) units (H:G:S of 3:61:36), which had a significant impact on the distribution of inter-unit linkages. The predominant linkages were the β-O-4' alkyl-aryl ethers (78 % of all linkages), with substantial proportions of condensed linkages such as phenylcoumarans (11 %), resinols (4 %), spirodienones (4 %), and dibenzodioxocins (2 %). Moreover, DFRC revealed that tridordeum straw lignin was partly acylated at the γ-OH with both acetates and p-coumarates. Acetates were principally attached to G-units, whereas p-coumarates were predominantly attached to S-units. Furthermore, and more importantly, tritordeum lignin incorporates remarkable amounts of a valuable flavone, tricin, exceeding 30 g per kilogram of straw. Given the diverse industrial applications associated with this high-value molecule, tritordeum straw emerges as a promising and sustainable resource for its extraction.
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Affiliation(s)
- Javier Benito
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Reina Mercedes 10, E-41012 Seville, Spain
| | - Gisela Marques
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Reina Mercedes 10, E-41012 Seville, Spain
| | - Mario J Rosado
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Reina Mercedes 10, E-41012 Seville, Spain
| | - Francisco Barro
- Instituto de Agricultura Sostenible (IAS), CSIC, Córdoba, Spain
| | - Ana Gutiérrez
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Reina Mercedes 10, E-41012 Seville, Spain
| | - José C Del Río
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Reina Mercedes 10, E-41012 Seville, Spain
| | - Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Reina Mercedes 10, E-41012 Seville, Spain.
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Ma QH. Lignin Biosynthesis and Its Diversified Roles in Disease Resistance. Genes (Basel) 2024; 15:295. [PMID: 38540353 PMCID: PMC10969841 DOI: 10.3390/genes15030295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 02/06/2024] [Accepted: 02/23/2024] [Indexed: 06/14/2024] Open
Abstract
Lignin is complex, three-dimensional biopolymer existing in plant cell wall. Lignin biosynthesis is increasingly highlighted because it is closely related to the wide applications in agriculture and industry productions, including in pulping process, forage digestibility, bio-fuel, and carbon sequestration. The functions of lignin in planta have also attracted more attentions recently, particularly in plant defense response against different pathogens. In this brief review, the progress in lignin biosynthesis is discussed, and the lignin's roles in disease resistance are thoroughly elucidated. This issue will help in developing broad-spectrum resistant crops in agriculture.
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Affiliation(s)
- Qing-Hu Ma
- State Key Laboratory of Plant Diversity and Specialty Crops, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
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10
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Peracchi LM, Panahabadi R, Barros-Rios J, Bartley LE, Sanguinet KA. Grass lignin: biosynthesis, biological roles, and industrial applications. FRONTIERS IN PLANT SCIENCE 2024; 15:1343097. [PMID: 38463570 PMCID: PMC10921064 DOI: 10.3389/fpls.2024.1343097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 02/06/2024] [Indexed: 03/12/2024]
Abstract
Lignin is a phenolic heteropolymer found in most terrestrial plants that contributes an essential role in plant growth, abiotic stress tolerance, and biotic stress resistance. Recent research in grass lignin biosynthesis has found differences compared to dicots such as Arabidopsis thaliana. For example, the prolific incorporation of hydroxycinnamic acids into grass secondary cell walls improve the structural integrity of vascular and structural elements via covalent crosslinking. Conversely, fundamental monolignol chemistry conserves the mechanisms of monolignol translocation and polymerization across the plant phylum. Emerging evidence suggests grass lignin compositions contribute to abiotic stress tolerance, and periods of biotic stress often alter cereal lignin compositions to hinder pathogenesis. This same recalcitrance also inhibits industrial valorization of plant biomass, making lignin alterations and reductions a prolific field of research. This review presents an update of grass lignin biosynthesis, translocation, and polymerization, highlights how lignified grass cell walls contribute to plant development and stress responses, and briefly addresses genetic engineering strategies that may benefit industrial applications.
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Affiliation(s)
- Luigi M. Peracchi
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, United States
| | - Rahele Panahabadi
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Jaime Barros-Rios
- Division of Plant Sciences and Interdisciplinary Plant Group, University of Missouri, Columbia, MO, United States
| | - Laura E. Bartley
- Institute of Biological Chemistry, Washington State University, Pullman, WA, United States
| | - Karen A. Sanguinet
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, United States
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11
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Dwivedi N, Yamamoto S, Zhao Y, Hou G, Bowling F, Tobimatsu Y, Liu C. Simultaneous suppression of lignin, tricin and wall-bound phenolic biosynthesis via the expression of monolignol 4-O-methyltransferases in rice. PLANT BIOTECHNOLOGY JOURNAL 2024; 22:330-346. [PMID: 37795899 PMCID: PMC10826995 DOI: 10.1111/pbi.14186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Revised: 07/14/2023] [Accepted: 09/16/2023] [Indexed: 10/06/2023]
Abstract
Grass lignocelluloses feature complex compositions and structures. In addition to the presence of conventional lignin units from monolignols, acylated monolignols and flavonoid tricin also incorporate into lignin polymer; moreover, hydroxycinnamates, particularly ferulate, cross-link arabinoxylan chains with each other and/or with lignin polymers. These structural complexities make grass lignocellulosics difficult to optimize for effective agro-industrial applications. In the present study, we assess the applications of two engineered monolignol 4-O-methyltransferases (MOMTs) in modifying rice lignocellulosic properties. Two MOMTs confer regiospecific para-methylation of monolignols but with different catalytic preferences. The expression of MOMTs in rice resulted in differential but drastic suppression of lignin deposition, showing more than 50% decrease in guaiacyl lignin and up to an 90% reduction in syringyl lignin in transgenic lines. Moreover, the levels of arabinoxylan-bound ferulate were reduced by up to 50%, and the levels of tricin in lignin fraction were also substantially reduced. Concomitantly, up to 11 μmol/g of the methanol-extractable 4-O-methylated ferulic acid and 5-7 μmol/g 4-O-methylated sinapic acid were accumulated in MOMT transgenic lines. Both MOMTs in vitro displayed discernible substrate promiscuity towards a range of phenolics in addition to the dominant substrate monolignols, which partially explains their broad effects on grass phenolic biosynthesis. The cell wall structural and compositional changes resulted in up to 30% increase in saccharification yield of the de-starched rice straw biomass after diluted acid-pretreatment. These results demonstrate an effective strategy to tailor complex grass cell walls to generate improved cellulosic feedstocks for the fermentable sugar-based production of biofuel and bio-chemicals.
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Affiliation(s)
- Nidhi Dwivedi
- Biology DepartmentBrookhaven Nation LaboratoryUptonNew YorkUSA
- Feedstocks DivisionJoint BioEnergy InstituteEmeryvilleCAUSA
| | - Senri Yamamoto
- Research Institute for Sustainable HumanosphereKyoto UniversityGokasho, UjiKyotoJapan
| | - Yunjun Zhao
- Biology DepartmentBrookhaven Nation LaboratoryUptonNew YorkUSA
| | - Guichuan Hou
- Dewel Microscopy FacilityAppalachian State UniversityBooneNorth CarolinaUSA
| | - Forrest Bowling
- Biology DepartmentBrookhaven Nation LaboratoryUptonNew YorkUSA
| | - Yuki Tobimatsu
- Research Institute for Sustainable HumanosphereKyoto UniversityGokasho, UjiKyotoJapan
| | - Chang‐Jun Liu
- Biology DepartmentBrookhaven Nation LaboratoryUptonNew YorkUSA
- Feedstocks DivisionJoint BioEnergy InstituteEmeryvilleCAUSA
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12
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Lam LPY, Tobimatsu Y, Suzuki S, Tanaka T, Yamamoto S, Takeda-Kimura Y, Osakabe Y, Osakabe K, Ralph J, Bartley LE, Umezawa T. Disruption of p-coumaroyl-CoA:monolignol transferases in rice drastically alters lignin composition. PLANT PHYSIOLOGY 2024; 194:832-848. [PMID: 37831082 DOI: 10.1093/plphys/kiad549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 09/28/2023] [Accepted: 09/28/2023] [Indexed: 10/14/2023]
Abstract
Grasses are abundant feedstocks that can supply lignocellulosic biomass for production of cell-wall-derived chemicals. In grass cell walls, lignin is acylated with p-coumarate. These p-coumarate decorations arise from the incorporation of monolignol p-coumarate conjugates during lignification. A previous biochemical study identified a rice (Oryza sativa) BAHD acyltransferase (AT) with p-coumaroyl-CoA:monolignol transferase (PMT) activity in vitro. In this study, we determined that that enzyme, which we name OsPMT1 (also known as OsAT4), and the closely related OsPMT2 (OsAT3) harbor similar catalytic activity toward monolignols. We generated rice mutants deficient in either or both OsPMT1 and OsPMT2 by CRISPR/Cas9-mediated mutagenesis and subjected the mutants' cell walls to analysis using chemical and nuclear magnetic resonance methods. Our results demonstrated that OsPMT1 and OsPMT2 both function in lignin p-coumaroylation in the major vegetative tissues of rice. Notably, lignin-bound p-coumarate units were undetectable in the ospmt1 ospmt2-2 double-knockout mutant. Further, in-depth structural analysis of purified lignins from the ospmt1 ospmt2-2 mutant compared with control lignins from wild-type rice revealed stark changes in polymer structures, including alterations in syringyl/guaiacyl aromatic unit ratios and inter-monomeric linkage patterns, and increased molecular weights. Our results provide insights into lignin polymerization in grasses that will be useful for the optimization of bioengineering approaches for the effective use of biomass in biorefineries.
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Affiliation(s)
- Lydia Pui Ying Lam
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan
- Center for Crossover Education, Graduate School of Engineering Science, Akita University, Akita, Akita 010-0852, Japan
| | - Yuki Tobimatsu
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Shiro Suzuki
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan
- Faculty of Applied Biological Sciences, Graduate School of Natural Science and Technology, and The United Graduate School of Agricultural Science, Gifu University, Gifu, Gifu 501-1193Japan
| | - Takuto Tanaka
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Senri Yamamoto
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Yuri Takeda-Kimura
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Yuriko Osakabe
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Kanagawa 226-8502Japan
| | - Keishi Osakabe
- Faculty of Bioscience and Bioindustry, Tokushima University,Tokushima, Tokushima 770-8503Japan
| | - John Ralph
- Department of Biochemistry, and the U.S. Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI 53726, USA
| | - Laura E Bartley
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan
- Institute of Biological Chemistry, Washington State University, Pullman, WA 99164, USA
| | - Toshiaki Umezawa
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan
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13
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Li W, Lin YCJ, Chen YL, Zhou C, Li S, De Ridder N, Oliveira DM, Zhang L, Zhang B, Wang JP, Xu C, Fu X, Luo K, Wu AM, Demura T, Lu MZ, Zhou Y, Li L, Umezawa T, Boerjan W, Chiang VL. Woody plant cell walls: Fundamentals and utilization. MOLECULAR PLANT 2024; 17:112-140. [PMID: 38102833 DOI: 10.1016/j.molp.2023.12.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 12/12/2023] [Accepted: 12/12/2023] [Indexed: 12/17/2023]
Abstract
Cell walls in plants, particularly forest trees, are the major carbon sink of the terrestrial ecosystem. Chemical and biosynthetic features of plant cell walls were revealed early on, focusing mostly on herbaceous model species. Recent developments in genomics, transcriptomics, epigenomics, transgenesis, and associated analytical techniques are enabling novel insights into formation of woody cell walls. Here, we review multilevel regulation of cell wall biosynthesis in forest tree species. We highlight current approaches to engineering cell walls as potential feedstock for materials and energy and survey reported field tests of such engineered transgenic trees. We outline opportunities and challenges in future research to better understand cell type biogenesis for more efficient wood cell wall modification and utilization for biomaterials or for enhanced carbon capture and storage.
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Affiliation(s)
- Wei Li
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | | | - Ying-Lan Chen
- Department of Biotechnology and Bioindustry Sciences, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan, Taiwan, China
| | - Chenguang Zhou
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Shuang Li
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Nette De Ridder
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Dyoni M Oliveira
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Lanjun Zhang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Baocai Zhang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jack P Wang
- Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC 27695, USA
| | - Changzheng Xu
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Integrative Science Center of Germplasm Creation, School of Life Sciences, Southwest University, Chongqing 400715, China
| | - Xiaokang Fu
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Integrative Science Center of Germplasm Creation, School of Life Sciences, Southwest University, Chongqing 400715, China
| | - Keming Luo
- Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Integrative Science Center of Germplasm Creation, School of Life Sciences, Southwest University, Chongqing 400715, China
| | - Ai-Min Wu
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architectures, South China Agricultural University, Guangzhou 510642, China
| | - Taku Demura
- Center for Digital Green-innovation, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan
| | - Meng-Zhu Lu
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A & F University, Hangzhou 311300, China
| | - Yihua Zhou
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Laigeng Li
- CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China
| | - Toshiaki Umezawa
- Laboratory of Metabolic Science of Forest Plants and Microorganisms, Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Wout Boerjan
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium; VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Vincent L Chiang
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China; Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC 27695, USA.
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14
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Balk M, Sofia P, Neffe AT, Tirelli N. Lignin, the Lignification Process, and Advanced, Lignin-Based Materials. Int J Mol Sci 2023; 24:11668. [PMID: 37511430 PMCID: PMC10380785 DOI: 10.3390/ijms241411668] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 07/10/2023] [Accepted: 07/12/2023] [Indexed: 07/30/2023] Open
Abstract
At a time when environmental considerations are increasingly pushing for the application of circular economy concepts in materials science, lignin stands out as an under-used but promising and environmentally benign building block. This review focuses (A) on understanding what we mean with lignin, i.e., where it can be found and how it is produced in plants, devoting particular attention to the identity of lignols (including ferulates that are instrumental for integrating lignin with cell wall polysaccharides) and to the details of their coupling reactions and (B) on providing an overview how lignin can actually be employed as a component of materials in healthcare and energy applications, finally paying specific attention to the use of lignin in the development of organic shape-memory materials.
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Affiliation(s)
- Maria Balk
- Institute of Functional Materials for Sustainability, Helmholtz-Zentrum Hereon, Kantstrasse 55, 14513 Teltow, Germany
| | - Pietro Sofia
- Laboratory of Polymers and Biomaterials, Fondazione Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
- The Open University Affiliated Research Centre at the Istituto Italiano di Tecnologia (ARC@IIT), Via Morego 30, 16163 Genova, Italy
| | - Axel T Neffe
- Institute of Functional Materials for Sustainability, Helmholtz-Zentrum Hereon, Kantstrasse 55, 14513 Teltow, Germany
| | - Nicola Tirelli
- Laboratory of Polymers and Biomaterials, Fondazione Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
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15
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Xiao LP, Lv YH, Yang YQ, Zou SL, Shi ZJ, Sun RC. Unraveling the Lignin Structural Variation in Different Bamboo Species. Int J Mol Sci 2023; 24:10304. [PMID: 37373449 DOI: 10.3390/ijms241210304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Revised: 06/13/2023] [Accepted: 06/15/2023] [Indexed: 06/29/2023] Open
Abstract
The structure of cellulolytic enzyme lignin (CEL) prepared from three bamboo species (Neosinocalamus affinis, Bambusa lapidea, and Dendrocalamus brandisii) has been characterized by different analytical methods. The chemical composition analysis revealed a higher lignin content, up to 32.6% of B. lapidea as compared to that of N. affinis (20.7%) and D. brandisii (23.8%). The results indicated that bamboo lignin was a p-hydroxyphenyl-guaiacyl-syringyl (H-G-S) lignin associated with p-coumarates and ferulates. Advanced NMR analyses displayed that the isolated CELs were extensively acylated at the γ-carbon of the lignin side chain (with either acetate and/or p-coumarate groups). Moreover, a predominance of S over G lignin moieties was found in CELs of N. affinis and B. lapidea, with the lowest S/G ratio observed in D. brandisii lignin. Catalytic hydrogenolysis of lignin demonstrated that 4-propyl-substituted syringol/guaiacol and propanol guaiacol/syringol derived from β-O-4' moieties, and methyl coumarate/ferulate derived from hydroxycinnamic units were identified as the six major monomeric products. We anticipate that the insights of this work could shed light on the sufficient understanding of lignin, which could open a new avenue to facilitate the efficient utilization of bamboo.
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Affiliation(s)
- Ling-Ping Xiao
- Liaoning Key Lab of Lignocellulose Chemistry and BioMaterials, Liaoning Collaborative Innovation Center for Lignocellulosic Biorefinery, College of Light Industry and Chemical Engineering, Dalian Polytechnic University, Dalian 116034, China
| | - Yi-Hui Lv
- Liaoning Key Lab of Lignocellulose Chemistry and BioMaterials, Liaoning Collaborative Innovation Center for Lignocellulosic Biorefinery, College of Light Industry and Chemical Engineering, Dalian Polytechnic University, Dalian 116034, China
| | - Yue-Qin Yang
- Liaoning Key Lab of Lignocellulose Chemistry and BioMaterials, Liaoning Collaborative Innovation Center for Lignocellulosic Biorefinery, College of Light Industry and Chemical Engineering, Dalian Polytechnic University, Dalian 116034, China
| | - Shuang-Lin Zou
- Liaoning Key Lab of Lignocellulose Chemistry and BioMaterials, Liaoning Collaborative Innovation Center for Lignocellulosic Biorefinery, College of Light Industry and Chemical Engineering, Dalian Polytechnic University, Dalian 116034, China
| | - Zheng-Jun Shi
- Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming 650224, China
| | - Run-Cang Sun
- Liaoning Key Lab of Lignocellulose Chemistry and BioMaterials, Liaoning Collaborative Innovation Center for Lignocellulosic Biorefinery, College of Light Industry and Chemical Engineering, Dalian Polytechnic University, Dalian 116034, China
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16
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Rencoret J, Marques G, Rosado MJ, Benito J, Barro F, Gutiérrez A, Del Río JC. Variations in the composition and structure of the lignins of oat (Avena sativa L.) straws according to variety and planting season. Int J Biol Macromol 2023; 242:124811. [PMID: 37187416 DOI: 10.1016/j.ijbiomac.2023.124811] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 05/03/2023] [Accepted: 05/07/2023] [Indexed: 05/17/2023]
Abstract
The differences in the composition and structure of the lignins from straws of different oat (Avena sativa L.) varieties, planted in two seasons (winter and spring), were studied in detail by different analytical techniques such as pyrolysis coupled to gas chromatography-mass spectrometry (Py-GC/MS), two-dimensional nuclear magnetic resonance (2D-NMR), derivatization followed by reductive cleavage (DFRC), and gel permeation chromatography (GPC). Overall, the analyses revealed that oat straw lignins were enriched in guaiacyl (G; 50-56 %) and syringyl (S; 39-44 %) units, with relatively lower amounts of p-hydroxyphenyl (H; 4-6 %) units. The lignins also incorporated significant quantities of p-coumarates (9-14 % of total lignin units), which are acylating the γ-OH of the lignin side chains, and predominantly over the S units. Furthermore, oat straw lignins also incorporated considerable amounts of the flavone tricin (5-12 % of total lignin units). Interestingly, this study revealed that the lignin content and composition of the oat straws varies with genotype and planting season. Since p-coumarates and tricin are high-value aromatic compounds especially attractive from a biorefinery point of view, the information disclosed here is highly relevant to plant breeding programs aimed at developing functional foods and lignin modifications for improved biorefinery applications.
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Affiliation(s)
- Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain.
| | - Gisela Marques
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
| | - Mario J Rosado
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
| | - Javier Benito
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
| | - Francisco Barro
- Instituto de Agricultura Sostenible (IAS), CSIC, Córdoba, Spain
| | - Ana Gutiérrez
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
| | - José C Del Río
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
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17
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Lv Z, Bai Z, Su L, Rao J, Hu Y, Tian R, Jia S, Guan Y, Lü B, Peng F. Unveiling lignin structures and lignin-carbohydrate complex (LCC) linkages of bamboo (Phyllostachys pubescens) fibers and parenchyma cells. Int J Biol Macromol 2023; 241:124461. [PMID: 37086759 DOI: 10.1016/j.ijbiomac.2023.124461] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 03/24/2023] [Accepted: 04/11/2023] [Indexed: 04/24/2023]
Abstract
Bamboo (Phyllostachys pubescens) is an attractive biomass block to develop biorefining industry, however, less emphasis has been placed on elucidating the chemical linkage variations of lignin and LCC between different bamboo cell walls. Here, purified milled wood lignin (MWLp) and lignin-carbohydrate complex (LCC) were isolated from bamboo (Phyllostachys pubescens) fibers (BF) and parenchyma cells (PC), respectively. The variations of structure features and chemical linkages of lignin and LCC were investigated via FT-IR, 2D HSQC NMR, and 31P NMR techniques. 2D HSQC NMR revealed that β-O-4 alkyl-aryl ether linkages and resinol (β-β) substructure were the main substructures in BF-MWLp and PC-MWLp. β-1 linkages existed in the PC-MWLp (3.18/100 Ar), but not in BF-MWLp. Moreover, tricin, as a flavonoid compound, was only detected in the BF-MWLp. The amount of the syringyl (S) units of PC-MWLp was higher than BF-MWLp. The results indicated that phenyl glycoside (PhGlc) bonds (mainly lignin and xylan) were the predominant chemical linkage type of LCC bonds in BF-LCC and PC-LCC, and the high contents of PhGlc bonds (45.53/100 Ar) were presented in PC. Our finding can provide a reference for the structural variations of lignin and LCC between the different bamboo cell walls.
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Affiliation(s)
- Ziwen Lv
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Ziyi Bai
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Liyuan Su
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Jun Rao
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Yajie Hu
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Rui Tian
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Siyu Jia
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Ying Guan
- Forestry and Landscape Architecture, Anhui Agricultural University, Hefei 230036, China
| | - Baozhong Lü
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China
| | - Feng Peng
- Beijing Key Laboratory of Lignocellulosic Chemistry, Beijing Forestry University, Beijing 100083, China; MOE Engineering Research Center of Forestry Biomass Materials and Energy, Beijing Forestry University, Beijing 100083, China.
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18
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Chen M, Li Y, Liu H, Zhang D, Shi QS, Zhong XQ, Guo Y, Xie XB. High value valorization of lignin as environmental benign antimicrobial. Mater Today Bio 2023; 18:100520. [PMID: 36590981 PMCID: PMC9800644 DOI: 10.1016/j.mtbio.2022.100520] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 12/08/2022] [Accepted: 12/10/2022] [Indexed: 12/23/2022] Open
Abstract
Lignin is a natural aromatic polymer of p-hydroxyphenylpropanoids with various biological activities. Noticeably, plants have made use of lignin as biocides to defend themselves from pathogen microbial invasions. Thus, the use of isolated lignin as environmentally benign antimicrobial is believed to be a promising high value approach for lignin valorization. On the other hand, as green and sustainable product of plant photosynthesis, lignin should be beneficial to reduce the carbon footprint of antimicrobial industry. There have been many reports that make use of lignin to prepare antimicrobials for different applications. However, lignin is highly heterogeneous polymers different in their monomers, linkages, molecular weight, and functional groups. The structure and property relationship, and the mechanism of action of lignin as antimicrobial remains ambiguous. To show light on these issues, we reviewed the publications on lignin chemistry, antimicrobial activity of lignin models and isolated lignin and associated mechanism of actions, approaches in synthesis of lignin with improved antimicrobial activity, and the applications of lignin as antimicrobial in different fields. Hopefully, this review will help and inspire researchers in the preparation of lignin antimicrobial for their applications.
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Affiliation(s)
- Mingjie Chen
- Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Yan Li
- Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
- Liaoning Key Lab of Lignocellulose Chemistry and BioMaterials, Liaoning Collaborative Innovation Center for Lignocellulosic Biorefinery, College of Light Industry and Chemical Engineering, Dalian Polytechnic University, Dalian, 116034, China
| | - Huiming Liu
- Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Dandan Zhang
- Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Qing-Shan Shi
- Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Xin-Qi Zhong
- Department of Neonatology, The Third Affiliated Hospital of Guangzhou Medical University, Guangzhou, 510150, China
| | - Yanzhu Guo
- Liaoning Key Lab of Lignocellulose Chemistry and BioMaterials, Liaoning Collaborative Innovation Center for Lignocellulosic Biorefinery, College of Light Industry and Chemical Engineering, Dalian Polytechnic University, Dalian, 116034, China
| | - Xiao-Bao Xie
- Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
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19
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Ramakrishna P, Cesarino I. Loosen up! How lignin manipulations affect biomass molecular assembly and deconstruction. PLANT PHYSIOLOGY 2023; 191:3-5. [PMID: 36303327 PMCID: PMC9806552 DOI: 10.1093/plphys/kiac503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 10/03/2022] [Indexed: 06/16/2023]
Affiliation(s)
- Priya Ramakrishna
- Laboratory for Biological Geochemistry, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Igor Cesarino
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil
- Synthetic and Systems Biology Center, InovaUSP, Avenida Professor Lucio Martins Rodrigues, São Paulo, Brazil
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20
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Barna D, Alshaal T, Tóth IO, Cziáky Z, Gábor Fári M, Domokos-Szabolcsy É, Bákonyi N. Bisoactive metabolite profile and antioxidant properties of brown juice, a processed Alfalfa (Medicago sativa) by-product. Heliyon 2022; 8:e11655. [PMID: 36444258 PMCID: PMC9699961 DOI: 10.1016/j.heliyon.2022.e11655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Revised: 07/25/2022] [Accepted: 11/10/2022] [Indexed: 11/19/2022] Open
Abstract
Recently, leaf protein concentrate (LPC) has gained increased attention in response to the constantly growing protein demand. Green biorefineries can become more economical by valorizing their by-products and reducing environmental risks. The current study describes the variations in the antioxidant capacity and phytochemical composition of a liquid by-product (referred to as brown juice (BJ)) obtained during the extraction of leaf protein concentrate (LPC) from the fresh biomass of alfalfa (Medicago sativa L.). Four varieties of alfalfa were investigated during three harvest times, i.e., August 2017 (first harvest), September 2017 (second harvest), and June 2018 (third harvest). Also, the fresh BJ was lacto-fermented to extend its preservation period but also modifying its composition. The results of different general phytochemical composition analyses and antioxidant assays revealed similar tendencies across different alfalfa varieties and harvest times. Most of the phytochemicals in the BJ identified by HPLC-MS/MS can be classified as flavonoids/flavonoid derivatives, e.g., apigenin, naringenin, luteolin, formononetin. Substantially, the lacto-fermentation process induced a switch into aglycones, e.g., apigenin content increased by an order of magnitude, while apigenin-7-O-glucuronide content was halved after lacto-fermentation. Additionally, several B vitamins were detected, including B2, B3, and B7. These results could provide a basis for various ways of industrial valorization but need to be strengthened by data generated from large-scale production.
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21
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Ferreira SS, Goeminne G, Simões MS, Pina AVDA, Lima LGAD, Pezard J, Gutiérrez A, Rencoret J, Mortimer JC, Del Río JC, Boerjan W, Cesarino I. Transcriptional and metabolic changes associated with internode development and reduced cinnamyl alcohol dehydrogenase activity in sorghum. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:6307-6333. [PMID: 35788296 DOI: 10.1093/jxb/erac300] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 07/04/2022] [Indexed: 06/15/2023]
Abstract
The molecular mechanisms associated with secondary cell wall (SCW) deposition in sorghum remain largely uncharacterized. Here, we employed untargeted metabolomics and large-scale transcriptomics to correlate changes in SCW deposition with variation in global gene expression profiles and metabolite abundance along an elongating internode of sorghum, with a major focus on lignin and phenolic metabolism. To gain deeper insight into the metabolic and transcriptional changes associated with pathway perturbations, a bmr6 mutant [with reduced cinnamyl alcohol dehydrogenase (CAD) activity] was analyzed. In the wild type, internode development was accompanied by an increase in the content of oligolignols, p-hydroxybenzaldehyde, hydroxycinnamate esters, and flavonoid glucosides, including tricin derivatives. We further identified modules of genes whose expression pattern correlated with SCW deposition and the accumulation of these target metabolites. Reduced CAD activity resulted in the accumulation of hexosylated forms of hydroxycinnamates (and their derivatives), hydroxycinnamaldehydes, and benzenoids. The expression of genes belonging to one specific module in our co-expression analysis correlated with the differential accumulation of these compounds and contributed to explaining this metabolic phenotype. Metabolomics and transcriptomics data further suggested that CAD perturbation activates distinct detoxification routes in sorghum internodes. Our systems biology approach provides a landscape of the metabolic and transcriptional changes associated with internode development and with reduced CAD activity in sorghum.
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Affiliation(s)
- Sávio Siqueira Ferreira
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, São Paulo, Brazil
| | - Geert Goeminne
- VIB Center for Plant Systems Biology, Ghent, Belgium
- VIB Metabolomics Core, Ghent, Belgium
| | - Marcella Siqueira Simões
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, São Paulo, Brazil
| | | | | | - Jade Pezard
- Joint BioEnergy Institute, Emeryville, CA, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Ana Gutiérrez
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avenida de la Reina Mercedes, Seville, Spain
| | - Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avenida de la Reina Mercedes, Seville, Spain
| | - Jenny C Mortimer
- Joint BioEnergy Institute, Emeryville, CA, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - José C Del Río
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avenida de la Reina Mercedes, Seville, Spain
| | - Wout Boerjan
- VIB Center for Plant Systems Biology, Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
| | - Igor Cesarino
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, São Paulo, Brazil
- Synthetic and Systems Biology Center, InovaUSP, Avenida Professor Lucio Martins Rodrigues, São Paulo, Brazil
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22
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Li X, Zhou H, Xiao N, Wu X, Shan Y, Chen L, Wang C, Wang Z, Huang J, Li A, Li X. Expanding the Coverage of Metabolic Landscape in Cultivated Rice with Integrated Computational Approaches. GENOMICS, PROTEOMICS & BIOINFORMATICS 2022; 20:702-714. [PMID: 33631426 PMCID: PMC9880819 DOI: 10.1016/j.gpb.2020.06.018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Revised: 05/06/2020] [Accepted: 09/08/2020] [Indexed: 01/31/2023]
Abstract
Genome-scale metabolomics analysis is increasingly used for pathway and function discovery in the post-genomics era. The great potential offered by developed mass spectrometry (MS)-based technologies has been hindered, since only a small portion of detected metabolites were identifiable so far. To address the critical issue of low identification coverage in metabolomics, we adopted a deep metabolomics analysis strategy by integrating advanced algorithms and expanded reference databases. The experimental reference spectra and in silico reference spectra were adopted to facilitate the structural annotation. To further characterize the structure of metabolites, two approaches were incorporated into our strategy, i.e., structural motif search combined with neutral loss scanning and metabolite association network. Untargeted metabolomics analysis was performed on 150 rice cultivars using ultra-performance liquid chromatography coupled with quadrupole-Orbitrap MS. Consequently, a total of 1939 out of 4491 metabolite features in the MS/MS spectral tag (MS2T) library were annotated, representing an extension of annotation coverage by an order of magnitude in rice. The differential accumulation patterns of flavonoids between indica and japonica cultivars were revealed, especially O-sulfated flavonoids. A series of closely-related flavonolignans were characterized, adding further evidence for the crucial role of tricin-oligolignols in lignification. Our study provides an important protocol for exploring phytochemical diversity in other plant species.
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Affiliation(s)
- Xuetong Li
- CAS Key Laboratory of Synthetic Biology / National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hongxia Zhou
- CAS Key Laboratory of Synthetic Biology / National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ning Xiao
- Lixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou 225007, China
| | - Xueting Wu
- CAS Key Laboratory of Synthetic Biology / National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Yuanhong Shan
- CAS Key Laboratory of Synthetic Biology / National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Longxian Chen
- CAS Key Laboratory of Synthetic Biology / National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Cuiting Wang
- CAS Key Laboratory of Synthetic Biology / National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Zixuan Wang
- CAS Key Laboratory of Synthetic Biology / National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Jirong Huang
- Shanghai Key Laboratory of Plant Molecular Sciences, College of Life Sciences, Shanghai Normal University, Shanghai 200234, China,Corresponding authors.
| | - Aihong Li
- Lixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou 225007, China,Corresponding authors.
| | - Xuan Li
- CAS Key Laboratory of Synthetic Biology / National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China,University of Chinese Academy of Sciences, Beijing 100049, China,Corresponding authors.
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23
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Lu Q, Jia L, Awasthi MK, Jing G, Wang Y, He L, Zhao N, Chen Z, Zhang Z, Shi X. Variations in lignin monomer contents and stable hydrogen isotope ratios in methoxy groups during the biodegradation of garden biomass. Sci Rep 2022; 12:8734. [PMID: 35610354 PMCID: PMC9130509 DOI: 10.1038/s41598-022-12689-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 05/05/2022] [Indexed: 11/09/2022] Open
Abstract
Lignin, a highly polymerized organic component of plant cells, is one of the most difficult aromatic substances to degrade. Selective biodegradation under mild conditions is a promising method, but the dynamic variations in lignin monomers during the biodegradation of lignocellulose are not fully understood. In this study, we evaluated the differences in lignin degradation under different microbial inoculation based on the lignin monomer content, monomer ratio, and stable hydrogen isotope ratio of lignin methoxy groups (δ2HLM). The weight loss during degradation and the net loss of lignocellulosic components improved dramatically with fungal inoculation. Syringyl monolignol (S-lignin), which contains two methoxy groups, was more difficult to degrade than guaiacyl (G-lignin), which contains only one methoxy group. The co-culture of Pseudomonas mandelii and Aspergillus fumigatus produced the greatest decrease in the G/S ratio, but δ2HLM values did not differ significantly among the three biodegradation experiments, although the enrichment was done within the fungal inoculation. The fluctuation of δ2HLM values during the initial phase of biodegradation may be related to the loss of pectic polysaccharides (another methoxy donor), which mainly originate from fallen leaves. Overall, the relative δ2HLM signals were preserved despite decreasing G/S ratios in the three degradation systems. Nevertheless, some details of lignin δ2HLM as a biomarker for biogeochemical cycles need to be explored further.
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Affiliation(s)
- Qiangqiang Lu
- Key Laboratory of Soil Resource and Biotech Applications, Shaanxi Academy of Sciences, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an Botanical Garden of Shaanxi Province (Institute of Botany of Shaanxi Province), No.17, Cuihua South Road, Xi'an, 710061, China
- School of Geography and Tourism, Shaanxi Normal University, Xi'an, 710119, China
| | - Lili Jia
- College of Forestry, Northwest A&F University, Yangling, 712100, China
| | - Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, China
| | - Guanghua Jing
- Key Laboratory of Soil Resource and Biotech Applications, Shaanxi Academy of Sciences, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an Botanical Garden of Shaanxi Province (Institute of Botany of Shaanxi Province), No.17, Cuihua South Road, Xi'an, 710061, China
| | - Yabo Wang
- School of Geography and Tourism, Shaanxi Normal University, Xi'an, 710119, China
| | - Liyan He
- Key Laboratory of Soil Resource and Biotech Applications, Shaanxi Academy of Sciences, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an Botanical Garden of Shaanxi Province (Institute of Botany of Shaanxi Province), No.17, Cuihua South Road, Xi'an, 710061, China
| | - Ning Zhao
- Key Laboratory of Soil Resource and Biotech Applications, Shaanxi Academy of Sciences, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an Botanical Garden of Shaanxi Province (Institute of Botany of Shaanxi Province), No.17, Cuihua South Road, Xi'an, 710061, China
| | - Zhikun Chen
- Key Laboratory of Soil Resource and Biotech Applications, Shaanxi Academy of Sciences, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an Botanical Garden of Shaanxi Province (Institute of Botany of Shaanxi Province), No.17, Cuihua South Road, Xi'an, 710061, China
| | - Zhao Zhang
- Key Laboratory of Soil Resource and Biotech Applications, Shaanxi Academy of Sciences, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an Botanical Garden of Shaanxi Province (Institute of Botany of Shaanxi Province), No.17, Cuihua South Road, Xi'an, 710061, China
| | - Xinwei Shi
- Key Laboratory of Soil Resource and Biotech Applications, Shaanxi Academy of Sciences, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an Botanical Garden of Shaanxi Province (Institute of Botany of Shaanxi Province), No.17, Cuihua South Road, Xi'an, 710061, China.
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24
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Mendes GGM, Mota TR, Bossoni GEB, Marchiosi R, Oliveira DMD, Constantin RP, Dos Santos WD, Ferrarese-Filho O. Inhibiting tricin biosynthesis improves maize lignocellulose saccharification. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 178:12-19. [PMID: 35247693 DOI: 10.1016/j.plaphy.2022.02.018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 02/14/2022] [Accepted: 02/19/2022] [Indexed: 06/14/2023]
Abstract
Lignin is a technological bottleneck to convert polysaccharides into fermentable sugars, and different strategies of genetic-based metabolic engineering have been applied to improve biomass saccharification. Using maize seedlings grown hydroponically for 24 h, we conducted a quick non-transgenic approach with five enzyme inhibitors of the lignin and tricin pathways. Two compounds [3,4-(methylenedioxy)cinnamic acid: MDCA and 2,4-pyridinedicarboxylic acid: PDCA] revealed interesting findings on root growth, lignin composition, and saccharification. By inhibiting hydroxycinnamoyl-CoA ligase, a key enzyme of phenylpropanoid pathway, MDCA decreased the lignin content and improved saccharification, but it decreased root growth. By inhibiting flavone synthase, a key enzyme of tricin biosynthesis, PDCA decreased total lignin content and improved saccharification without affecting root growth. PDCA was three-fold more effective than MDCA, suggesting that controlling lignin biosynthesis with enzymatic inhibitors may be an attractive strategy to improve biomass saccharification.
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Affiliation(s)
| | - Thatiane Rodrigues Mota
- Ghent University, Department of Plant Biotechnology and Bioinformatics and VIB Center for Plant Systems Biology, Ghent, Belgium
| | | | - Rogério Marchiosi
- Laboratory of Plant Biochemistry, State University of Maringá, Av. Colombo, 5790, 87020-900, Maringá, PR, Brazil
| | - Dyoni Matias de Oliveira
- Ghent University, Department of Plant Biotechnology and Bioinformatics and VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Rodrigo Polimeni Constantin
- Laboratory of Plant Biochemistry, State University of Maringá, Av. Colombo, 5790, 87020-900, Maringá, PR, Brazil
| | - Wanderley Dantas Dos Santos
- Laboratory of Plant Biochemistry, State University of Maringá, Av. Colombo, 5790, 87020-900, Maringá, PR, Brazil
| | - Osvaldo Ferrarese-Filho
- Laboratory of Plant Biochemistry, State University of Maringá, Av. Colombo, 5790, 87020-900, Maringá, PR, Brazil.
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25
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Elder T, Del Río JC, Ralph J, Rencoret J, Kim H. Density functional theory study on the coupling and reactions of diferuloylputrescine as a lignin monomer. PHYTOCHEMISTRY 2022; 197:113122. [PMID: 35131641 DOI: 10.1016/j.phytochem.2022.113122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 01/25/2022] [Accepted: 01/29/2022] [Indexed: 06/14/2023]
Abstract
Diferuloylputrescine has been found in a variety of plant species, and recent work has provided evidence of its covalent bonding into lignin. Results from nuclear magnetic resonance spectroscopy revealed the presence of bonding patterns consistent with homo-coupling of diferuloylputrescine and the possibility of cross-coupling with lignin. In the present work, density functional theory calculations have been applied to assess the energetics associated with radical coupling, rearomatization, and dehydrogenation for possible homo-coupled dimers of diferuloylputrescine and cross-coupled dimers of diferuloylputrescine and coniferyl alcohol. The values obtained for these reaction energetics are consistent with those reported for monolignols and other novel lignin monomers. As such, this study shows that there would be no thermodynamic impediment to the incorporation of diferuloylputrescine into the lignin polymer and its addition to the growing list of non-canonical lignin monomers.
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Affiliation(s)
- Thomas Elder
- USDA-Forest Service, Southern Research Station, 521 Devall Drive, Auburn, AL, 36849, USA.
| | - José C Del Río
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Av. Reina Mercedes, 10, 41012, Seville, Spain
| | - John Ralph
- Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, 1552 University Ave, Madison, WI, 53726, USA; Department of Biochemistry, University of Wisconsin, 433 Babcock Drive, Madison, WI, 53706, USA
| | - Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Av. Reina Mercedes, 10, 41012, Seville, Spain
| | - Hoon Kim
- Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, 1552 University Ave, Madison, WI, 53726, USA
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26
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Lam PY, Wang L, Lui ACW, Liu H, Takeda-Kimura Y, Chen MX, Zhu FY, Zhang J, Umezawa T, Tobimatsu Y, Lo C. Deficiency in flavonoid biosynthesis genes CHS, CHI, and CHIL alters rice flavonoid and lignin profiles. PLANT PHYSIOLOGY 2022; 188:1993-2011. [PMID: 34963002 PMCID: PMC8969032 DOI: 10.1093/plphys/kiab606] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Accepted: 12/09/2021] [Indexed: 05/24/2023]
Abstract
Lignin is a complex phenylpropanoid polymer deposited in the secondary cell walls of vascular plants. Unlike most gymnosperm and eudicot lignins that are generated via the polymerization of monolignols, grass lignins additionally incorporate the flavonoid tricin as a natural lignin monomer. The biosynthesis and functions of tricin-integrated lignin (tricin-lignin) in grass cell walls and its effects on the utility of grass biomass remain largely unknown. We herein report a comparative analysis of rice (Oryza sativa) mutants deficient in the early flavonoid biosynthetic genes encoding CHALCONE SYNTHASE (CHS), CHALCONE ISOMERASE (CHI), and CHI-LIKE (CHIL), with an emphasis on the analyses of disrupted tricin-lignin formation and the concurrent changes in lignin profiles and cell wall digestibility. All examined CHS-, CHI-, and CHIL-deficient rice mutants were largely depleted of extractable flavones, including tricin, and nearly devoid of tricin-lignin in the cell walls, supporting the crucial roles of CHS and CHI as committed enzymes and CHIL as a noncatalytic enhancer in the conserved biosynthetic pathway leading to flavone and tricin-lignin formation. In-depth cell wall structural analyses further indicated that lignin content and composition, including the monolignol-derived units, were differentially altered in the mutants. However, regardless of the extent of the lignin alterations, cell wall saccharification efficiencies of all tested rice mutants were similar to that of the wild-type controls. Together with earlier studies on other tricin-depleted grass mutant and transgenic plants, our results reflect the complexity in the metabolic consequences of tricin pathway perturbations and the relationships between lignin profiles and cell wall properties.
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Affiliation(s)
| | | | - Andy C W Lui
- School of Biological Sciences, The University of Hong Kong, Pokfulam, Hong Kong, China
| | - Hongjia Liu
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | | | - Mo-Xian Chen
- Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Fu-Yuan Zhu
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037 China
| | - Jianhua Zhang
- Department of Biology, Hong Kong Baptist University, Kowloon Tong, Hong Kong, China
- State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, Hong Kong, China
| | - Toshiaki Umezawa
- Research Institute for Sustainable Humanosphere, Kyoto University, Kyoto 611-0011, Japan
- Research Unit for Realization of Sustainable Society, Kyoto University, Kyoto 611-0011, Japan
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27
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de Vries L, MacKay HA, Smith RA, Mottiar Y, Karlen SD, Unda F, Muirragui E, Bingman C, Vander Meulen K, Beebe ET, Fox BG, Ralph J, Mansfield SD. pHBMT1, a BAHD-family monolignol acyltransferase, mediates lignin acylation in poplar. PLANT PHYSIOLOGY 2022; 188:1014-1027. [PMID: 34977949 PMCID: PMC8825253 DOI: 10.1093/plphys/kiab546] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 10/26/2021] [Indexed: 05/13/2023]
Abstract
Poplar (Populus) lignin is naturally acylated with p-hydroxybenzoate ester moieties. However, the enzyme(s) involved in the biosynthesis of the monolignol-p-hydroxybenzoates have remained largely unknown. Here, we performed an in vitro screen of the Populus trichocarpa BAHD acyltransferase superfamily (116 genes) using a wheatgerm cell-free translation system and found five enzymes capable of producing monolignol-p-hydroxybenzoates. We then compared the transcript abundance of the five corresponding genes with p-hydroxybenzoate concentrations using naturally occurring unrelated genotypes of P. trichocarpa and revealed a positive correlation between the expression of p-hydroxybenzoyl-CoA monolig-nol transferase (pHBMT1, Potri.001G448000) and p-hydroxybenzoate levels. To test whether pHBMT1 is responsible for the biosynthesis of monolignol-p-hydroxybenzoates, we overexpressed pHBMT1 in hybrid poplar (Populus alba × P. grandidentata) (35S::pHBMT1 and C4H::pHBMT1). Using three complementary analytical methods, we showed that there was an increase in soluble monolignol-p-hydroxybenzoates and cell-wall-bound monolignol-p-hydroxybenzoates in the poplar transgenics. As these pendent groups are ester-linked, saponification releases p-hydroxybenzoate, a precursor to parabens that are used in pharmaceuticals and cosmetics. This identified gene could therefore be used to engineer lignocellulosic biomass with increased value for emerging biorefinery strategies.
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Affiliation(s)
- Lisanne de Vries
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
| | - Heather A MacKay
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Rebecca A Smith
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Yaseen Mottiar
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
| | - Steven D Karlen
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Faride Unda
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
| | - Emilia Muirragui
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Craig Bingman
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Kirk Vander Meulen
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Emily T Beebe
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Brian G Fox
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - John Ralph
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Shawn D Mansfield
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
- Author for communication:
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Mahon EL, de Vries L, Jang SK, Middar S, Kim H, Unda F, Ralph J, Mansfield SD. Exogenous chalcone synthase expression in developing poplar xylem incorporates naringenin into lignins. PLANT PHYSIOLOGY 2022; 188:984-996. [PMID: 34718804 PMCID: PMC8825309 DOI: 10.1093/plphys/kiab499] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 09/30/2021] [Indexed: 05/03/2023]
Abstract
Lignin, a polyphenolic polymer, is a major chemical constituent of the cell walls of terrestrial plants. The biosynthesis of lignin is a highly plastic process, as highlighted by an increasing number of noncanonical monomers that have been successfully identified in an array of plants. Here, we engineered hybrid poplar (Populus alba x grandidentata) to express chalcone synthase 3 (MdCHS3) derived from apple (Malus domestica) in lignifying xylem. Transgenic trees displayed an accumulation of the flavonoid naringenin in xylem methanolic extracts not inherently observed in wild-type trees. Nuclear magnetic resonance analysis revealed the presence of naringenin in the extract-free, cellulase-treated xylem lignin of MdCHS3-poplar, indicating the incorporation of this flavonoid-derived compound into poplar secondary cell wall lignins. The transgenic trees also displayed lower total cell wall lignin content and increased cell wall carbohydrate content and performed significantly better in limited saccharification assays than their wild-type counterparts.
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Affiliation(s)
- Elizabeth L Mahon
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada
- US Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, Wisconsin, USA
| | - Lisanne de Vries
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada
- US Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, Wisconsin, USA
| | - Soo-Kyeong Jang
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada
| | - Sandeep Middar
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada
| | - Hoon Kim
- US Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, Wisconsin, USA
| | - Faride Unda
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada
- US Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, Wisconsin, USA
| | - John Ralph
- US Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, Wisconsin, USA
- Department of Biochemistry, University of Wisconsin, Madison, Wisconsin, USA
| | - Shawn D Mansfield
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada
- US Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, Wisconsin, USA
- Author for communication:
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Rencoret J, Rosado MJ, Kim H, Timokhin VI, Gutiérrez A, Bausch F, Rosenau T, Potthast A, Ralph J, del Río JC. Flavonoids naringenin chalcone, naringenin, dihydrotricin, and tricin are lignin monomers in papyrus. PLANT PHYSIOLOGY 2022; 188:208-219. [PMID: 34662399 PMCID: PMC8774827 DOI: 10.1093/plphys/kiab469] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 09/02/2021] [Indexed: 05/26/2023]
Abstract
Recent studies demonstrate that several polyphenolic compounds produced from beyond the canonical monolignol biosynthetic pathways can behave as lignin monomers, participating in radical coupling reactions and being incorporated into lignin polymers. Here, we show various classes of flavonoids, the chalconoid naringenin chalcone, the flavanones naringenin and dihydrotricin, and the flavone tricin, incorporated into the lignin polymer of papyrus (Cyperus papyrus L.) rind. These flavonoids were released from the rind lignin by Derivatization Followed by Reductive Cleavage (DFRC), a chemical degradative method that cleaves the β-ether linkages, indicating that at least a fraction of each was integrated into the lignin as β-ether-linked structures. Due to the particular structure of tricin and dihydrotricin, whose C-3' and C-5' positions at their B-rings are occupied by methoxy groups, these compounds can only be incorporated into the lignin through 4'-O-β bonds. However, naringenin chalcone and naringenin have no substituents at these positions and can therefore form additional carbon-carbon linkages, including 3'- or 5'-β linkages that form phenylcoumaran structures not susceptible to cleavage by DFRC. Furthermore, Nuclear Magnetic Resonance analysis indicated that naringenin chalcone can also form additional linkages through its conjugated double bond. The discovery expands the range of flavonoids incorporated into natural lignins, further broadens the traditional definition of lignin, and enhances the premise that any phenolic compound present at the cell wall during lignification could be oxidized and potentially integrated into the lignin structure, depending only on its chemical compatibility. This study indicates that papyrus lignin has a unique structure, as it is the only lignin known to date that integrates such a diversity of phenolic compounds from different classes of flavonoids. This discovery will open up new ways to engineer and design lignins with specific properties and for enhanced value.
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Affiliation(s)
- Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avda. Reina Mercedes, 10, 41012-Seville, Spain
| | - Mario J Rosado
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avda. Reina Mercedes, 10, 41012-Seville, Spain
| | - Hoon Kim
- Department of Energy Great Lakes Bioenergy Research Center, The Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
| | - Vitaliy I Timokhin
- Department of Energy Great Lakes Bioenergy Research Center, The Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - Ana Gutiérrez
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avda. Reina Mercedes, 10, 41012-Seville, Spain
| | - Florian Bausch
- Institute of Chemistry of Renewable Resources, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Straße 24, A-3430 Tulln, Austria
| | - Thomas Rosenau
- Institute of Chemistry of Renewable Resources, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Straße 24, A-3430 Tulln, Austria
| | - Antje Potthast
- Institute of Chemistry of Renewable Resources, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Straße 24, A-3430 Tulln, Austria
| | - John Ralph
- Department of Energy Great Lakes Bioenergy Research Center, The Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
| | - José C del Río
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avda. Reina Mercedes, 10, 41012-Seville, Spain
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Tetreault HM, Gries T, Liu S, Toy J, Xin Z, Vermerris W, Ralph J, Funnell-Harris DL, Sattler SE. The Sorghum ( Sorghum bicolor) Brown Midrib 30 Gene Encodes a Chalcone Isomerase Required for Cell Wall Lignification. FRONTIERS IN PLANT SCIENCE 2021; 12:732307. [PMID: 34925394 PMCID: PMC8674566 DOI: 10.3389/fpls.2021.732307] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Accepted: 10/19/2021] [Indexed: 06/14/2023]
Abstract
In sorghum (Sorghum bicolor) and other C4 grasses, brown midrib (bmr) mutants have long been associated with plants impaired in their ability to synthesize lignin. The brown midrib 30 (Bmr30) gene, identified using a bulk segregant analysis and next-generation sequencing, was determined to encode a chalcone isomerase (CHI). Two independent mutations within this gene confirmed that loss of its function was responsible for the brown leaf midrib phenotype and reduced lignin concentration. Loss of the Bmr30 gene function, as shown by histochemical staining of leaf midrib and stalk sections, resulted in altered cell wall composition. In the bmr30 mutants, CHI activity was drastically reduced, and the accumulation of total flavonoids and total anthocyanins was impaired, which is consistent with its function in flavonoid biosynthesis. The level of the flavone lignin monomer tricin was reduced 20-fold in the stem relative to wild type, and to undetectable levels in the leaf tissue of the mutants. The bmr30 mutant, therefore, harbors a mutation in a phenylpropanoid biosynthetic gene that is key to the interconnection between flavonoids and monolignols, both of which are utilized for lignin synthesis in the grasses.
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Affiliation(s)
- Hannah M. Tetreault
- Wheat, Sorghum and Forage Research Unit, Agricultural Research Service, United States Department of Agriculture, Lincoln, NE, United States
- Department of Agronomy and Horticulture, University of Nebraska–Lincoln, Lincoln, NE, United States
| | - Tammy Gries
- Wheat, Sorghum and Forage Research Unit, Agricultural Research Service, United States Department of Agriculture, Lincoln, NE, United States
- Department of Agronomy and Horticulture, University of Nebraska–Lincoln, Lincoln, NE, United States
| | - Sarah Liu
- Department of Biochemistry, The DOE Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI, United States
| | - John Toy
- Wheat, Sorghum and Forage Research Unit, Agricultural Research Service, United States Department of Agriculture, Lincoln, NE, United States
- Department of Agronomy and Horticulture, University of Nebraska–Lincoln, Lincoln, NE, United States
| | - Zhanguo Xin
- Plant Stress and Germplasm Development Unit, Agricultural Research Service, United States Department of Agriculture, Lubbock, TX, United States
| | - Wilfred Vermerris
- Department of Microbiology and Cell Science, UF Genetics Institute, University of Florida, Gainesville, FL, United States
| | - John Ralph
- Department of Biochemistry, The DOE Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI, United States
| | - Deanna L. Funnell-Harris
- Wheat, Sorghum and Forage Research Unit, Agricultural Research Service, United States Department of Agriculture, Lincoln, NE, United States
- Department of Plant Pathology, University of Nebraska–Lincoln, Lincoln, NE, United States
| | - Scott E. Sattler
- Wheat, Sorghum and Forage Research Unit, Agricultural Research Service, United States Department of Agriculture, Lincoln, NE, United States
- Department of Agronomy and Horticulture, University of Nebraska–Lincoln, Lincoln, NE, United States
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Rencoret J, Gutiérrez A, Marques G, del Río JC, Tobimatsu Y, Lam PY, Pérez-Boada M, Ruiz-Dueñas FJ, Barrasa JM, Martínez AT. New Insights on Structures Forming the Lignin-Like Fractions of Ancestral Plants. FRONTIERS IN PLANT SCIENCE 2021; 12:740923. [PMID: 34691117 PMCID: PMC8528957 DOI: 10.3389/fpls.2021.740923] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Accepted: 09/13/2021] [Indexed: 05/31/2023]
Abstract
In the present work, lignin-like fractions were isolated from several ancestral plants -including moss (Hypnum cupressiforme and Polytrichum commune), lycophyte (Selaginella kraussiana), horsetail (Equisetum palustre), fern (Nephrolepis cordifolia and Pteridium aquilinum), cycad (Cycas revoluta), and gnetophyte (Ephedra fragilis) species- and structurally characterized by pyrolysis-gas chromatography-mass spectrometry (Py-GC/MS) and two-dimensional nuclear magnetic resonance (2D-NMR) spectroscopy. Py-GC/MS yielded marker compounds characteristic of lignin units, except in the H. cupressiforme, P. commune and E. palustre "lignins," where they were practically absent. Additional structural information on the other five samples was obtained from 2D-NMR experiments displaying intense correlations signals of guaiacyl (G) units in the fern and cycad lignins, along with smaller amounts of p-hydroxyphenyl (H) units. Interestingly, the lignins from the lycophyte S. kraussiana and the gnetophyte E. fragilis were not only composed of G- and H-lignin units but they also incorporated significant amounts of the syringyl (S) units characteristic of angiosperms, which appeared much later in plant evolution, most probably due to convergent evolution. The latter finding is also supported by the abundance of syringol derivatives after the Py-GC/MS analyses of these two samples. Regarding lignin structure, β-O-4' alkyl-aryl ethers were the most abundant substructures, followed by condensed β-5' phenylcoumarans and β-β' resinols (and dibenzodioxocins in the fern and cycad lignins). The highest percentages of alkyl-aryl ether structures correlated with the higher S/G ratio in the S. Kraussiana and E. fragilis lignin-like fractions. More interestingly, apart from the typical monolignol-derived lignin units (H, G and S), other structures, assigned to flavonoid compounds never reported before in natural lignins (such as amentoflavone, apigenin, hypnogenol B, kaempferol, and naringenin), could also be identified in the HSQC spectra of all the lignin-like fractions analyzed. With this purpose, in vitro synthesized coniferyl-naringenin and coniferyl-apigenin dehydrogenation polymers were used as standards. These flavonoids were abundant in H. cupressiforme appearing as the only constituents of the moss lignin-like fraction (including 84% of dimeric hypnogenol B) and their abundance decreased in those of S. Kraussiana (with amentoflavone and naringenin representing 14% of the total aromatic units), and the two ancient gymnosperms (0.4-1.2%) and ferns (0-0.7%).
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Affiliation(s)
- Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Seville, Spain
| | - Ana Gutiérrez
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Seville, Spain
| | - Gisela Marques
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Seville, Spain
| | - José C. del Río
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Seville, Spain
| | - Yuki Tobimatsu
- Research Institute for Sustainable Humanosphere, Kyoto University, Kyoto, Japan
| | - Pui Ying Lam
- Research Institute for Sustainable Humanosphere, Kyoto University, Kyoto, Japan
| | - Marta Pérez-Boada
- Centro de Investigaciones Biológicas “Margarita Salas” (CIB), CSIC, Madrid, Spain
| | | | - José M. Barrasa
- Departamento de Biología Vegetal, Universidad de Alcalá, Alcalá de Henares, Spain
| | - Angel T. Martínez
- Centro de Investigaciones Biológicas “Margarita Salas” (CIB), CSIC, Madrid, Spain
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Smith RA, Cass CL, Petrik DL, Padmakshan D, Ralph J, Sedbrook JC, Karlen SD. Stacking AsFMT overexpression with BdPMT loss of function enhances monolignol ferulate production in Brachypodium distachyon. PLANT BIOTECHNOLOGY JOURNAL 2021; 19:1878-1886. [PMID: 33949064 PMCID: PMC8428837 DOI: 10.1111/pbi.13606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 04/09/2021] [Accepted: 04/13/2021] [Indexed: 06/12/2023]
Abstract
To what degree can the lignin subunits in a monocot be derived from monolignol ferulate (ML-FA) conjugates? This simple question comes with a complex set of variables. Three potential requirements for optimizing ML-FA production are as follows: (1) The presence of an active FERULOYL-CoA MONOLIGNOL TRANSFERASE (FMT) enzyme throughout monolignol production; (2) Suppression or elimination of enzymatic pathways competing for monolignols and intermediates during lignin biosynthesis; and (3) Exclusion of alternative phenolic compounds that participate in lignification. A 16-fold increase in lignin-bound ML-FA incorporation was observed by introducing an AsFMT gene into Brachypodium distachyon. On its own, knocking out the native p-COUMAROYL-CoA MONOLIGNOL TRANSFERASE (BdPMT) pathway that competes for monolignols and the p-coumaroyl-CoA intermediate did not change ML-FA incorporation, nor did partial loss of CINNAMOYL-CoA REDUCTASE1 (CCR1) function, which reduced metabolic flux to monolignols. However, stacking AsFMT into the Bdpmt-1 mutant resulted in a 32-fold increase in ML-FA incorporation into lignin over the wild-type level.
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Affiliation(s)
- Rebecca A. Smith
- U.S. Department of Energy Great Lakes Bioenergy Research Center and the Department of BiochemistryWisconsin Energy InstituteUniversity of WisconsinMadisonWIUSA
| | - Cynthia L. Cass
- School of Biological SciencesIllinois State UniversityNormalILUSA
- U.S. Department of Energy Great Lakes Bioenergy Research CenterMadisonWIUSA
| | - Deborah L. Petrik
- School of Biological SciencesIllinois State UniversityNormalILUSA
- U.S. Department of Energy Great Lakes Bioenergy Research CenterMadisonWIUSA
- Department of BiologyNortheastern State UniversityTahlequahOKUSA
| | - Dharshana Padmakshan
- U.S. Department of Energy Great Lakes Bioenergy Research Center and the Department of BiochemistryWisconsin Energy InstituteUniversity of WisconsinMadisonWIUSA
| | - John Ralph
- U.S. Department of Energy Great Lakes Bioenergy Research Center and the Department of BiochemistryWisconsin Energy InstituteUniversity of WisconsinMadisonWIUSA
| | - John C. Sedbrook
- School of Biological SciencesIllinois State UniversityNormalILUSA
- U.S. Department of Energy Great Lakes Bioenergy Research CenterMadisonWIUSA
| | - Steven D. Karlen
- U.S. Department of Energy Great Lakes Bioenergy Research Center and the Department of BiochemistryWisconsin Energy InstituteUniversity of WisconsinMadisonWIUSA
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Lam PY, Lui ACW, Wang L, Liu H, Umezawa T, Tobimatsu Y, Lo C. Tricin Biosynthesis and Bioengineering. FRONTIERS IN PLANT SCIENCE 2021; 12:733198. [PMID: 34512707 PMCID: PMC8426635 DOI: 10.3389/fpls.2021.733198] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Accepted: 07/28/2021] [Indexed: 05/23/2023]
Abstract
Tricin (3',5'-dimethoxyflavone) is a specialized metabolite which not only confers stress tolerance and involves in defense responses in plants but also represents a promising nutraceutical. Tricin-type metabolites are widely present as soluble tricin O-glycosides and tricin-oligolignols in all grass species examined, but only show patchy occurrences in unrelated lineages in dicots. More strikingly, tricin is a lignin monomer in grasses and several other angiosperm species, representing one of the "non-monolignol" lignin monomers identified in nature. The unique biological functions of tricin especially as a lignin monomer have driven the identification and characterization of tricin biosynthetic enzymes in the past decade. This review summarizes the current understanding of tricin biosynthetic pathway in grasses and tricin-accumulating dicots. The characterized and potential enzymes involved in tricin biosynthesis are highlighted along with discussion on the debatable and uncharacterized steps. Finally, current developments of bioengineering on manipulating tricin biosynthesis toward the generation of functional food as well as modifications of lignin for improving biorefinery applications are summarized.
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Affiliation(s)
- Pui Ying Lam
- Research Institute for Sustainable Humanosphere, Kyoto University, Kyoto, Japan
| | - Andy C. W. Lui
- School of Biological Sciences, The University of Hong Kong, Pokfulam, Hong Kong, China
| | - Lanxiang Wang
- CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Hongjia Liu
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Toshiaki Umezawa
- Research Institute for Sustainable Humanosphere, Kyoto University, Kyoto, Japan
| | - Yuki Tobimatsu
- Research Institute for Sustainable Humanosphere, Kyoto University, Kyoto, Japan
| | - Clive Lo
- School of Biological Sciences, The University of Hong Kong, Pokfulam, Hong Kong, China
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de Vries L, Guevara-Rozo S, Cho M, Liu LY, Renneckar S, Mansfield SD. Tailoring renewable materials via plant biotechnology. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:167. [PMID: 34353358 PMCID: PMC8344217 DOI: 10.1186/s13068-021-02010-z] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Accepted: 07/06/2021] [Indexed: 05/03/2023]
Abstract
Plants inherently display a rich diversity in cell wall chemistry, as they synthesize an array of polysaccharides along with lignin, a polyphenolic that can vary dramatically in subunit composition and interunit linkage complexity. These same cell wall chemical constituents play essential roles in our society, having been isolated by a variety of evolving industrial processes and employed in the production of an array of commodity products to which humans are reliant. However, these polymers are inherently synthesized and intricately packaged into complex structures that facilitate plant survival and adaptation to local biogeoclimatic regions and stresses, not for ease of deconstruction and commercial product development. Herein, we describe evolving techniques and strategies for altering the metabolic pathways related to plant cell wall biosynthesis, and highlight the resulting impact on chemistry, architecture, and polymer interactions. Furthermore, this review illustrates how these unique targeted cell wall modifications could significantly extend the number, diversity, and value of products generated in existing and emerging biorefineries. These modifications can further target the ability for processing of engineered wood into advanced high performance materials. In doing so, we attempt to illuminate the complex connection on how polymer chemistry and structure can be tailored to advance renewable material applications, using all the chemical constituents of plant-derived biopolymers, including pectins, hemicelluloses, cellulose, and lignins.
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Affiliation(s)
- Lisanne de Vries
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin - Madison, Madison, WI , 53726, USA
| | - Sydne Guevara-Rozo
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - MiJung Cho
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Li-Yang Liu
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Scott Renneckar
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Shawn D Mansfield
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin - Madison, Madison, WI , 53726, USA.
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35
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Watanabe B, Nishitani S, Koeduka T. Synthesis of deuterium-labeled cinnamic acids: Understanding the volatile benzenoid pathway in the flowers of the Japanese loquat Eriobotrya japonica. J Labelled Comp Radiopharm 2021; 64:403-416. [PMID: 34243219 DOI: 10.1002/jlcr.3933] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 07/06/2021] [Accepted: 07/07/2021] [Indexed: 11/07/2022]
Abstract
Cinnamic acids are widely distributed in plants, including crops for human use, and exhibit a variety of activities that are beneficial to human health. They also occupy a pivotal position in the biosynthesis of phenylpropanoids such as lignins, anthocyanins, flavonoids, and coumarins. In this context, deuterium-labeled cinnamic acids have been used as tracers and internal standards in food and medicinal chemistry as well as plant biochemistry. Therefore, a concise synthesis of deuterium-labeled cinnamic acids would be highly desirable. In this study, we synthesized deuterium-labeled cinnamic acids using readily available deuterium sources. We also investigated a hydrogen-deuterium exchange reaction in an ethanol-d1 /Et3 N system. This method can introduce deuterium atoms at the ortho and para positions of the phenolic hydroxy groups as well as at the C-2 position of alkyl cinnamates and is applicable to various phenolic compounds. Using the synthesized labeled compounds, we demonstrated that the benzenoid volatiles, such as 4-methoxybenzaldehyde, in the scent of the flowers of the Japanese loquat Eriobotrya japonica are biosynthesized from phenylalanine via cinnamic and 4-coumaric acids. This study provides easy access to a variety of deuterium-labeled (poly)phenols, as well as to useful tools for studies of the metabolism of cinnamic acids in living systems.
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Affiliation(s)
- Bunta Watanabe
- Institute for Chemical Research, Kyoto University, Kyoto, Japan
| | - Shiori Nishitani
- Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yamaguchi, Japan
| | - Takao Koeduka
- Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yamaguchi, Japan
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36
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Identification and quantification of tricin present in medicinal herbs, plant foods and by-products using UPLC-QTOF-MS. CHEMICAL PAPERS 2021. [DOI: 10.1007/s11696-021-01651-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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37
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Oates NC, Abood A, Schirmacher AM, Alessi AM, Bird SM, Bennett JP, Leadbeater DR, Li Y, Dowle AA, Liu S, Tymokhin VI, Ralph J, McQueen-Mason SJ, Bruce NC. A multi-omics approach to lignocellulolytic enzyme discovery reveals a new ligninase activity from Parascedosporium putredinis NO1. Proc Natl Acad Sci U S A 2021; 118:e2008888118. [PMID: 33903229 PMCID: PMC8106297 DOI: 10.1073/pnas.2008888118] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Abstract
Lignocellulose, the structural component of plant cells, is a major agricultural byproduct and the most abundant terrestrial source of biopolymers on Earth. The complex and insoluble nature of lignocellulose limits its conversion into value-added commodities, and currently, efficient transformation requires expensive pretreatments and high loadings of enzymes. Here, we report on a fungus from the Parascedosporium genus, isolated from a wheat-straw composting community, that secretes a large and diverse array of carbohydrate-active enzymes (CAZymes) when grown on lignocellulosic substrates. We describe an oxidase activity that cleaves the major β-ether units in lignin, thereby releasing the flavonoid tricin from monocot lignin and enhancing the digestion of lignocellulose by polysaccharidase mixtures. We show that the enzyme, which holds potential for the biorefining industry, is widely distributed among lignocellulose-degrading fungi from the Sordariomycetes phylum.
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Affiliation(s)
- Nicola C Oates
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom
| | - Amira Abood
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom
| | - Alexandra M Schirmacher
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom
| | - Anna M Alessi
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom
| | - Susannah M Bird
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom
| | - Joseph P Bennett
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom
| | - Daniel R Leadbeater
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom
| | - Yi Li
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom
| | - Adam A Dowle
- Bioscience Technology Facility, Department of Biology, University of York, York YO10 5DD, United Kingdom
| | - Sarah Liu
- Department of Biochemistry, University of Wisconsin, Madison, WI 53726
- Department of Energy's Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI 53726
| | - Vitaliy I Tymokhin
- Department of Biochemistry, University of Wisconsin, Madison, WI 53726
- Department of Energy's Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI 53726
| | - John Ralph
- Department of Biochemistry, University of Wisconsin, Madison, WI 53726
- Department of Energy's Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI 53726
| | - Simon J McQueen-Mason
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom
| | - Neil C Bruce
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom;
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Elder T, Rencoret J, del Río JC, Kim H, Ralph J. Radical Coupling Reactions of Hydroxystilbene Glucosides and Coniferyl Alcohol: A Density Functional Theory Study. FRONTIERS IN PLANT SCIENCE 2021; 12:642848. [PMID: 33737945 PMCID: PMC7960926 DOI: 10.3389/fpls.2021.642848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 02/10/2021] [Indexed: 06/12/2023]
Abstract
The monolignols, p-coumaryl, coniferyl, and sinapyl alcohol, arise from the general phenylpropanoid biosynthetic pathway. Increasingly, however, authentic lignin monomers derived from outside this process are being identified and found to be fully incorporated into the lignin polymer. Among them, hydroxystilbene glucosides, which are produced through a hybrid process that combines the phenylpropanoid and acetate/malonate pathways, have been experimentally detected in the bark lignin of Norway spruce (Picea abies). Several interunit linkages have been identified and proposed to occur through homo-coupling of the hydroxystilbene glucosides and their cross-coupling with coniferyl alcohol. In the current work, the thermodynamics of these coupling modes and subsequent rearomatization reactions have been evaluated by the application of density functional theory (DFT) calculations. The objective of this paper is to determine favorable coupling and cross-coupling modes to help explain the experimental observations and attempt to predict other favorable pathways that might be further elucidated via in vitro polymerization aided by synthetic models and detailed structural studies.
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Affiliation(s)
- Thomas Elder
- USDA-Forest Service, Southern Research Station, Auburn, AL, United States
| | - Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
| | - José C. del Río
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
| | - Hoon Kim
- Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI, United States
| | - John Ralph
- Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin, Madison, WI, United States
- Department of Biochemistry, University of Wisconsin, Madison, WI, United States
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Rosado MJ, Rencoret J, Marques G, Gutiérrez A, del Río JC. Structural Characteristics of the Guaiacyl-Rich Lignins From Rice ( Oryza sativa L.) Husks and Straw. FRONTIERS IN PLANT SCIENCE 2021; 12:640475. [PMID: 33679856 PMCID: PMC7932998 DOI: 10.3389/fpls.2021.640475] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 01/26/2021] [Indexed: 05/28/2023]
Abstract
Rice (Oryza sativa L.) is a major cereal crop used for human nutrition worldwide. Harvesting and processing of rice generates huge amounts of lignocellulosic by-products such as rice husks and straw, which present important lignin contents that can be used to produce chemicals and materials. In this work, the structural characteristics of the lignins from rice husks and straw have been studied in detail. For this, whole cell walls of rice husks and straw and their isolated lignin preparations were thoroughly analyzed by an array of analytical techniques, including pyrolysis coupled to gas chromatography-mass spectrometry (Py-GC/MS), nuclear magnetic resonance (NMR), and derivatization followed by reductive cleavage (DFRC). The analyses revealed that both lignins, particularly the lignin from rice husks, were highly enriched in guaiacyl (G) units, and depleted in p-hydroxyphenyl (H) and syringyl (S) units, with H:G:S compositions of 7:81:12 (for rice husks) and 5:71:24 (for rice straw). These compositions were reflected in the relative abundances of the different interunit linkages. Hence, the lignin from rice husks were depleted in β-O-4' alkyl-aryl ether units (representing 65% of all inter-unit linkages), but presented important amounts of β-5' (phenylcoumarans, 23%) and other condensed units. On the other hand, the lignin from rice straw presented higher levels of β-O-4' alkyl-aryl ethers (78%) but lower levels of phenylcoumarans (β-5', 12%) and other condensed linkages, consistent with a lignin with a slightly higher S/G ratio. In addition, both lignins were partially acylated at the γ-OH of the side-chain (ca. 10-12% acylation degree) with p-coumarates, which overwhelmingly occurred over S-units. Finally, important amounts of the flavone tricin were also found incorporated into these lignins, being particularly abundant in the lignin of rice straw.
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Affiliation(s)
| | | | | | | | - José C. del Río
- Department of Plant Biotechnology, Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
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Chen F, Zhuo C, Xiao X, Pendergast TH, Devos KM. A rapid thioacidolysis method for biomass lignin composition and tricin analysis. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:18. [PMID: 33430954 PMCID: PMC7798261 DOI: 10.1186/s13068-020-01865-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Accepted: 12/21/2020] [Indexed: 05/23/2023]
Abstract
BACKGROUND Biomass composition varies from plant to plant and greatly affects biomass utilization. Lignin is a heterogeneous phenolic polymer derived mainly from p-coumaryl, coniferyl, and sinapyl alcohols and makes up to 10-25% of lignocellulosic biomass. Recently, tricin, an O-methylated flavone, was identified as a lignin monomer in many grass species. Tricin may function as a nucleation site for lignification and is advocated as a novel target for lignin engineering to reduce lignin content and improve biomass digestibility in grasses. Thioacidolysis is an analytical method that can be adapted to analyze both lignin monomeric composition and tricin content in the lignin polymer. However, the original thioacidolysis procedure is complex, laborious, and time consuming, making it difficult to be adopted for large-scale screening in biomass research. In this study, a modified, rapid higher throughput thioacidolysis method was developed. RESULTS In combination with gas chromatography-mass spectrometry (GC-MS) and liquid chromatography-mass spectrometry (LC-MS), the modified thioacidolysis method can be used to simultaneously characterize the lignin composition and tricin content using 2-5 mg of dry samples. The modified method eliminates the solvent extraction and drastically improves the throughput; 80 samples can be processed in one day per person. Our results indicate that there is no significant difference in the determination of lignin S/G ratio and tricin content between the original and modified methods. CONCLUSIONS A modified thioacidolysis protocol was established. The results demonstrate that the modified method can be used for rapid, high-throughput, and reliable lignin composition and tricin content analyses for screening transgenic plants for cell wall modifications or in large-scale genome-wide association studies (GWAS).
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Affiliation(s)
- Fang Chen
- BioDiscovery Institute and Department of Biological Sciences, University of North Texas, 1155 Union Circle #311428, Denton, TX, 76203, USA.
- Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
| | - Chunliu Zhuo
- BioDiscovery Institute and Department of Biological Sciences, University of North Texas, 1155 Union Circle #311428, Denton, TX, 76203, USA
- Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Xirong Xiao
- BioDiscovery Institute and Department of Biological Sciences, University of North Texas, 1155 Union Circle #311428, Denton, TX, 76203, USA
- Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Thomas H Pendergast
- Institute of Plant Breeding, Genetics and Genomics, Department of Crop and Soil Sciences, and Department of Plant Biology, University of Georgia, Athens, GA, 30602, USA
- Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Katrien M Devos
- Institute of Plant Breeding, Genetics and Genomics, Department of Crop and Soil Sciences, and Department of Plant Biology, University of Georgia, Athens, GA, 30602, USA
- Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
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Breeding Targets to Improve Biomass Quality in Miscanthus. Molecules 2021; 26:molecules26020254. [PMID: 33419100 PMCID: PMC7825460 DOI: 10.3390/molecules26020254] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Revised: 12/31/2020] [Accepted: 01/01/2021] [Indexed: 01/02/2023] Open
Abstract
Lignocellulosic crops are attractive bioresources for energy and chemicals production within a sustainable, carbon circular society. Miscanthus is one of the perennial grasses that exhibits great potential as a dedicated feedstock for conversion to biobased products in integrated biorefineries. The current biorefinery strategies are primarily focused on polysaccharide valorization and require severe pretreatments to overcome the lignin barrier. The need for such pretreatments represents an economic burden and impacts the overall sustainability of the biorefinery. Hence, increasing its efficiency has been a topic of great interest. Inversely, though pretreatment will remain an essential step, there is room to reduce its severity by optimizing the biomass composition rendering it more exploitable. Extensive studies have examined the miscanthus cell wall structures in great detail, and pinpointed those components that affect biomass digestibility under various pretreatments. Although lignin content has been identified as the most important factor limiting cell wall deconstruction, the effect of polysaccharides and interaction between the different constituents play an important role as well. The natural variation that is available within different miscanthus species and increased understanding of biosynthetic cell wall pathways have specified the potential to create novel accessions with improved digestibility through breeding or genetic modification. This review discusses the contribution of the main cell wall components on biomass degradation in relation to hydrothermal, dilute acid and alkaline pretreatments. Furthermore, traits worth advancing through breeding will be discussed in light of past, present and future breeding efforts.
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Carpita NC, McCann MC. Redesigning plant cell walls for the biomass-based bioeconomy. J Biol Chem 2020; 295:15144-15157. [PMID: 32868456 PMCID: PMC7606688 DOI: 10.1074/jbc.rev120.014561] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 08/30/2020] [Indexed: 01/28/2023] Open
Abstract
Lignocellulosic biomass-the lignin, cellulose, and hemicellulose that comprise major components of the plant cell well-is a sustainable resource that could be utilized in the United States to displace oil consumption from heavy vehicles, planes, and marine-going vessels and commodity chemicals. Biomass-derived sugars can also be supplied for microbial fermentative processing to fuels and chemicals or chemically deoxygenated to hydrocarbons. However, the economic value of biomass might be amplified by diversifying the range of target products that are synthesized in living plants. Genetic engineering of lignocellulosic biomass has previously focused on changing lignin content or composition to overcome recalcitrance, the intrinsic resistance of cell walls to deconstruction. New capabilities to remove lignin catalytically without denaturing the carbohydrate moiety have enabled the concept of the "lignin-first" biorefinery that includes high-value aromatic products. The structural complexity of plant cell-wall components also provides substrates for polymeric and functionalized target products, such as thermosets, thermoplastics, composites, cellulose nanocrystals, and nanofibers. With recent advances in the design of synthetic pathways, lignocellulosic biomass can be regarded as a substrate at various length scales for liquid hydrocarbon fuels, chemicals, and materials. In this review, we describe the architectures of plant cell walls and recent progress in overcoming recalcitrance and illustrate the potential for natural or engineered biomass to be used in the emerging bioeconomy.
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Affiliation(s)
- Nicholas C Carpita
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana, USA; Department of Biological Sciences, Purdue University, West Lafayette, Indiana, USA
| | - Maureen C McCann
- Department of Biological Sciences, Purdue University, West Lafayette, Indiana, USA; Center for Plant Biology, Purdue University, West Lafayette, Indiana, USA.
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Lui ACW, Lam PY, Chan KH, Wang L, Tobimatsu Y, Lo C. Convergent recruitment of 5'-hydroxylase activities by CYP75B flavonoid B-ring hydroxylases for tricin biosynthesis in Medicago legumes. THE NEW PHYTOLOGIST 2020; 228:269-284. [PMID: 32083753 DOI: 10.1111/nph.16498] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2019] [Accepted: 02/14/2020] [Indexed: 06/10/2023]
Abstract
Tricin (3',5'-dimethoxylated flavone) is a predominant flavonoid amongst monocots but occurs only in isolated and unrelated dicot lineages. Although tricin biosynthesis has been intensively studied in monocots, it has remained largely elusive in tricin-accumulating dicots. We investigated a subgroup of cytochrome P450 (CYP) 75B subfamily flavonoid B-ring hydroxylases (FBHs) from two tricin-accumulating legumes, Medicago truncatula and alfalfa (Medicago sativa), by phylogenetic, molecular, biochemical and mutant analyses. Five Medicago cytochrome P450 CYP75B FBHs are phylogenetically distant from other legume CYP75B members. Among them, MtFBH-4, MsFBH-4 and MsFBH-10 were expressed in tricin-accumulating vegetative tissues. In vitro and in planta analyses demonstrated that these proteins catalyze 3'- and 5'-hydroxylations critical to tricin biosynthesis. A key amino acid polymorphism, T492G, at their substrate recognition site 6 domain is required for the novel 5'-hydroxylation activities. Medicago truncatula mtfbh-4 mutants were tricin-deficient, indicating that MtFBH-4 is indispensable for tricin biosynthesis. Our results revealed that these Medicago legumes had acquired the tricin pathway through molecular evolution of CYP75B FBHs subsequent to speciation from other nontricin-accumulating legumes. Moreover, their evolution is independent of that of grass-specific CYP75B apigenin 3'-hydroxylases/chrysoeriol 5'-hydroxylases dedicated to tricin production and Asteraceae CYP75B flavonoid 3',5'-hydroxylases catalyzing the production of delphinidin-based pigments.
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Affiliation(s)
- Andy C W Lui
- School of Biological Sciences, The University of Hong Kong, Hong Kong, China
| | - Pui Ying Lam
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan
| | - Kwun Ho Chan
- School of Biological Sciences, The University of Hong Kong, Hong Kong, China
| | - Lanxiang Wang
- School of Biological Sciences, The University of Hong Kong, Hong Kong, China
| | - Yuki Tobimatsu
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan
| | - Clive Lo
- School of Biological Sciences, The University of Hong Kong, Hong Kong, China
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Abstract
This article is a Commentary on Lui et al. (2020), 228: 269–284.
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Affiliation(s)
- John Ralph
- Department of Biochemistry and DOE Great Lakes Bioenergy Research CenterWisconsin Energy InstituteUniversity of WisconsinMadisonWI53726USA
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Terrell E, Carré V, Dufour A, Aubriet F, Le Brech Y, Garcia-Pérez M. Contributions to Lignomics: Stochastic Generation of Oligomeric Lignin Structures for Interpretation of MALDI-FT-ICR-MS Results. CHEMSUSCHEM 2020; 13:4428-4445. [PMID: 32174017 DOI: 10.1002/cssc.202000239] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Indexed: 06/10/2023]
Abstract
The lack of standards to identify oligomeric molecules is a challenge for the analysis of complex organic mixtures. High-resolution mass spectrometry-specifically, Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS)-offers new opportunities for analysis of oligomers with the assignment of formulae (Cx Hy Oz ) to detected peaks. However, matching a specific structure to a given formula remains a challenge due to the inability of FT-ICR MS to distinguish between isomers. Additional separation techniques and other analyses (e.g., NMR spectroscopy) coupled with comparison of results to those from pure compounds is one route for assignment of MS peaks. Unfortunately, this strategy may be impractical for complete analysis of complex, heterogeneous samples. In this study we use computational stochastic generation of lignin oligomers to generate a molecular library for supporting the assignment of potential candidate structures to compounds detected during FT-ICR MS analysis. This approach may also be feasible for other macromolecules beyond lignin.
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Affiliation(s)
- Evan Terrell
- Biological Systems Engineering, Washington State University, Pullman, Washington, 99163, USA
| | - Vincent Carré
- LCP-A2MC, FR 3624, Université de Lorraine, ICPM, 57078, Metz Cedex 03, France
| | - Anthony Dufour
- LRGP, CNRS, Université de Lorraine, ENSIC, 54000, Nancy, France
| | - Frédéric Aubriet
- LCP-A2MC, FR 3624, Université de Lorraine, ICPM, 57078, Metz Cedex 03, France
| | - Yann Le Brech
- LRGP, CNRS, Université de Lorraine, ENSIC, 54000, Nancy, France
| | - Manuel Garcia-Pérez
- Biological Systems Engineering, Washington State University, Pullman, Washington, 99163, USA
- Bioproducts, Sciences, & Engineering Laboratory, Washington State University Tri-Cities, Richland, Washington, 99354, USA
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Neiva DM, Rencoret J, Marques G, Gutiérrez A, Gominho J, Pereira H, del Río JC. Lignin from Tree Barks: Chemical Structure and Valorization. CHEMSUSCHEM 2020; 13:4537-4547. [PMID: 32395900 PMCID: PMC7540371 DOI: 10.1002/cssc.202000431] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 05/11/2020] [Indexed: 05/31/2023]
Abstract
Lignins from different tree barks, including Norway spruce (Picea abies), eucalyptus (Eucalyptus globulus), mimosa (Acacia dealbata) and blackwood acacia (A. melanoxylon), are thoroughly characterized. The lignin from E. globulus bark is found to be enriched in syringyl (S) units, with lower amounts of guaiacyl (G) and p-hydroxyphenyl (H) units (H/G/S ratio of 1:26:73), which produces a lignin that is highly enriched in β-ether linkages (83 %), whereas those from the two Acacia barks have similar compositions (H/G/S ratio of ≈5:50:45), with a predominance of β-ethers (73-75 %) and lower amounts of condensed carbon-carbon linkages; the lignin from A. dealbata bark also includes some resorcinol-related compounds, that appear to be incorporated or intimately associated to the polymer. The lignin from P. abies bark is enriched in G units, with lower amounts of H units (H/G ratio of 14:86); this lignin is thus depleted in β-O-4' alkyl-aryl ether linkages (44 %) and enriched in condensed linkages. Interestingly, this lignin contains large amounts of hydroxystilbene glucosides that seem to be integrally incorporated into the lignin structure. This study indicates that lignins from tree barks can be seen as an interesting source of valuable phenolic compounds. Moreover, this study is useful for tailoring conversion technologies for bark deconstruction and valorization.
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Affiliation(s)
- Duarte M. Neiva
- Department of Plant BiotechnologyInstituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS)CSICAv. Reina Mercedes, 1041012-SevilleSpain
- Centro de Estudos FlorestaisInstituto Superior de AgronomiaUniversidade de LisboaTapada da Ajuda1349-017LisboaPortugal
| | - Jorge Rencoret
- Department of Plant BiotechnologyInstituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS)CSICAv. Reina Mercedes, 1041012-SevilleSpain
| | - Gisela Marques
- Department of Plant BiotechnologyInstituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS)CSICAv. Reina Mercedes, 1041012-SevilleSpain
| | - Ana Gutiérrez
- Department of Plant BiotechnologyInstituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS)CSICAv. Reina Mercedes, 1041012-SevilleSpain
| | - Jorge Gominho
- Centro de Estudos FlorestaisInstituto Superior de AgronomiaUniversidade de LisboaTapada da Ajuda1349-017LisboaPortugal
| | - Helena Pereira
- Centro de Estudos FlorestaisInstituto Superior de AgronomiaUniversidade de LisboaTapada da Ajuda1349-017LisboaPortugal
| | - José C. del Río
- Department of Plant BiotechnologyInstituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS)CSICAv. Reina Mercedes, 1041012-SevilleSpain
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Coomey JH, Sibout R, Hazen SP. Grass secondary cell walls, Brachypodium distachyon as a model for discovery. THE NEW PHYTOLOGIST 2020; 227:1649-1667. [PMID: 32285456 DOI: 10.1111/nph.16603] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Accepted: 03/05/2020] [Indexed: 05/20/2023]
Abstract
A key aspect of plant growth is the synthesis and deposition of cell walls. In specific tissues and cell types including xylem and fibre, a thick secondary wall comprised of cellulose, hemicellulose and lignin is deposited. Secondary cell walls provide a physical barrier that protects plants from pathogens, promotes tolerance to abiotic stresses and fortifies cells to withstand the forces associated with water transport and the physical weight of plant structures. Grasses have numerous cell wall features that are distinct from eudicots and other plants. Study of the model species Brachypodium distachyon as well as other grasses has revealed numerous features of the grass cell wall. These include the characterisation of xylosyl and arabinosyltransferases, a mixed-linkage glucan synthase and hydroxycinnamate acyltransferases. Perhaps the most fertile area for discovery has been the formation of lignins, including the identification of novel substrates and enzyme activities towards the synthesis of monolignols. Other enzymes function as polymerising agents or transferases that modify lignins and facilitate interactions with polysaccharides. The regulatory aspects of cell wall biosynthesis are largely overlapping with those of eudicots, but salient differences among species have been resolved that begin to identify the determinants that define grass cell walls.
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Affiliation(s)
- Joshua H Coomey
- Biology Department, University of Massachusetts, Amherst, MA, 01003, USA
- Plant Biology Graduate Program, University of Massachusetts, Amherst, MA, 01003, USA
| | - Richard Sibout
- Biopolymères Interactions Assemblages, INRAE, UR BIA, F-44316, Nantes, France
| | - Samuel P Hazen
- Biology Department, University of Massachusetts, Amherst, MA, 01003, USA
- Plant Biology Graduate Program, University of Massachusetts, Amherst, MA, 01003, USA
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A flavonoid monomer tricin in Gramineous plants: Metabolism, bio/chemosynthesis, biological properties, and toxicology. Food Chem 2020; 320:126617. [DOI: 10.1016/j.foodchem.2020.126617] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Revised: 03/11/2020] [Accepted: 03/14/2020] [Indexed: 12/27/2022]
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49
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Chen J, Hu X, Shi T, Yin H, Sun D, Hao Y, Xia X, Luo J, Fernie AR, He Z, Chen W. Metabolite-based genome-wide association study enables dissection of the flavonoid decoration pathway of wheat kernels. PLANT BIOTECHNOLOGY JOURNAL 2020; 18:1722-1735. [PMID: 31930656 PMCID: PMC7336285 DOI: 10.1111/pbi.13335] [Citation(s) in RCA: 82] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Accepted: 12/29/2019] [Indexed: 05/02/2023]
Abstract
The marriage of metabolomic approaches with genetic design has proven a powerful tool in dissecting diversity in the metabolome and has additionally enhanced our understanding of complex traits. That said, such studies have rarely been carried out in wheat. In this study, we detected 805 metabolites from wheat kernels and profiled their relative contents among 182 wheat accessions, conducting a metabolite-based genome-wide association study (mGWAS) utilizing 14 646 previously described polymorphic SNP markers. A total of 1098 mGWAS associations were detected with large effects, within which 26 candidate genes were tentatively designated for 42 loci. Enzymatic assay of two candidates indicated they could catalyse glucosylation and subsequent malonylation of various flavonoids and thereby the major flavonoid decoration pathway of wheat kernel was dissected. Moreover, numerous high-confidence genes associated with metabolite contents have been provided, as well as more subdivided metabolite networks which are yet to be explored within our data. These combined efforts presented the first step towards realizing metabolomics-associated breeding of wheat.
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Affiliation(s)
- Jie Chen
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan)Huazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Xin Hu
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan)Huazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Taotao Shi
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan)Huazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Huanran Yin
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan)Huazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Dongfa Sun
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Yuanfeng Hao
- National Wheat Improvement CenterInstitute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Xianchun Xia
- National Wheat Improvement CenterInstitute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Jie Luo
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan)Huazhong Agricultural UniversityWuhanChina
| | | | - Zhonghu He
- National Wheat Improvement CenterInstitute of Crop SciencesChinese Academy of Agricultural SciencesBeijingChina
| | - Wei Chen
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan)Huazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
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Miyamoto T, Takada R, Tobimatsu Y, Suzuki S, Yamamura M, Osakabe K, Osakabe Y, Sakamoto M, Umezawa T. Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 296:110466. [PMID: 32539998 DOI: 10.1016/j.plantsci.2020.110466] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Revised: 02/18/2020] [Accepted: 03/08/2020] [Indexed: 06/11/2023]
Abstract
Breeding to enrich lignin, a major component of lignocelluloses, in plants contributes to enhanced applications of lignocellulosic biomass into solid biofuels and valuable aromatic chemicals. To collect information on enhancing lignin deposition in grass species, important lignocellulose feedstocks, we generated rice (Oryza sativa) transgenic lines deficient in OsWRKY36 and OsWRKY102, which encode putative transcriptional repressors for secondary cell wall formation. We used CRISPR/Cas9-mediated targeted mutagenesis and closely characterized their altered cell walls using chemical and nuclear magnetic resonance (NMR) methods. Both OsWRKY36 and OsWRKY102 mutations significantly increased lignin content by up to 28 % and 32 %, respectively. Additionally, OsWRKY36/OsWRKY102-double-mutant lines displayed lignin enrichment of cell walls (by up to 41 %) with substantially altered culm morphology over the single-mutant lines as well as the wild-type controls. Our chemical and NMR analyses showed that relative abundances of guaiacyl and p-coumarate units were slightly higher and lower, respectively, in the WRKY mutant lignins compared with those in the wild-type lignins. Our results provide evidence that both OsWRKY36 and OsWRKY102 are associated with repression of rice lignification.
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Affiliation(s)
- Takuji Miyamoto
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan
| | - Rie Takada
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan
| | - Yuki Tobimatsu
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan
| | - Shiro Suzuki
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan
| | - Masaomi Yamamura
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan
| | - Keishi Osakabe
- Faculty of Bioscience and Bioindustry, Tokushima University, Kuramoto-cho, Tokushima, 770-8503, Japan
| | - Yuriko Osakabe
- Faculty of Bioscience and Bioindustry, Tokushima University, Kuramoto-cho, Tokushima, 770-8503, Japan
| | - Masahiro Sakamoto
- Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Toshiaki Umezawa
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan; Research Unit for Development of Global Sustainability, Kyoto University, Uji, Kyoto, 611-0011, Japan.
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