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Wang Y, Ding K, Li H, Kuang Y, Liang Z. Biography of Vitis genomics: recent advances and prospective. HORTICULTURE RESEARCH 2024; 11:uhae128. [PMID: 38966864 PMCID: PMC11220177 DOI: 10.1093/hr/uhae128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 04/25/2024] [Indexed: 07/06/2024]
Abstract
The grape genome is the basis for grape studies and breeding, and is also important for grape industries. In the last two decades, more than 44 grape genomes have been sequenced. Based on these genomes, researchers have made substantial progress in understanding the mechanism of biotic and abiotic resistance, berry quality formation, and breeding strategies. In addition, this work has provided essential data for future pangenome analyses. Apart from de novo assembled genomes, more than six whole-genome sequencing projects have provided datasets comprising almost 5000 accessions. Based on these datasets, researchers have explored the domestication and origins of the grape and clarified the gene flow that occurred during its dispersed history. Moreover, genome-wide association studies and other methods have been used to identify more than 900 genes related to resistance, quality, and developmental phases of grape. These findings have benefited grape studies and provide some basis for smart genomic selection breeding. Moreover, the grape genome has played a great role in grape studies and the grape industry, and the importance of genomics will increase sharply in the future.
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Affiliation(s)
- Yi Wang
- State Key Laboratory of Plant Diversity and Specialty Crops and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, the Chinese Academy of Sciences, No.20 Nanxincun, Xiangshan, Haidian, Beijing 100093, China
- China National Botanical Garden, Beijing 100093, China
| | - Kangyi Ding
- State Key Laboratory of Plant Diversity and Specialty Crops and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, the Chinese Academy of Sciences, No.20 Nanxincun, Xiangshan, Haidian, Beijing 100093, China
- China National Botanical Garden, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Huayang Li
- State Key Laboratory of Plant Diversity and Specialty Crops and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, the Chinese Academy of Sciences, No.20 Nanxincun, Xiangshan, Haidian, Beijing 100093, China
- China National Botanical Garden, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yangfu Kuang
- State Key Laboratory of Plant Diversity and Specialty Crops and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, the Chinese Academy of Sciences, No.20 Nanxincun, Xiangshan, Haidian, Beijing 100093, China
- China National Botanical Garden, Beijing 100093, China
| | - Zhenchang Liang
- State Key Laboratory of Plant Diversity and Specialty Crops and Beijing Key Laboratory of Grape Science and Enology, Institute of Botany, the Chinese Academy of Sciences, No.20 Nanxincun, Xiangshan, Haidian, Beijing 100093, China
- China National Botanical Garden, Beijing 100093, China
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Niederauer GF, de Oliveira GL, Aono AH, da Silva Graciano D, Carmello-Guerreiro SM, Moura MF, de Souza AP. Uncovering the molecular mechanisms of russet skin formation in Niagara grapevine (Vitis vinifera × Vitis labrusca). Sci Rep 2024; 14:6600. [PMID: 38504117 PMCID: PMC10950848 DOI: 10.1038/s41598-024-55745-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 02/27/2024] [Indexed: 03/21/2024] Open
Abstract
Grape breeding programs are mostly focused on developing new varieties with high production volume, sugar contents, and phenolic compound diversity combined with resistance and tolerance to the main pathogens under culture and adverse environmental conditions. The 'Niagara' variety (Vitis labrusca × Vitis vinifera) is one of the most widely produced and commercialized table grapes in Brazil. In this work, we selected three Niagara somatic variants with contrasting berry phenotypes and performed morphological and transcriptomic analyses of their berries. Histological sections of the berries were also performed to understand anatomical and chemical composition differences of the berry skin between the genotypes. An RNA-Seq pipeline was implemented, followed by global coexpression network modeling. 'Niagara Steck', an intensified russet mutant with the most extreme phenotype, showed the largest difference in expression and showed selection of coexpressed network modules involved in the development of its russet-like characteristics. Enrichment analysis of differently expressed genes and hub network modules revealed differences in transcription regulation, auxin signaling and cell wall and plasmatic membrane biogenesis. Cutin- and suberin-related genes were also differently expressed, supporting the anatomical differences observed with microscopy.
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Affiliation(s)
- Guilherme Francio Niederauer
- Molecular Biology and Genetic Engineering Center (CBMEG), University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Geovani Luciano de Oliveira
- Molecular Biology and Genetic Engineering Center (CBMEG), University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Alexandre Hild Aono
- Molecular Biology and Genetic Engineering Center (CBMEG), University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Diego da Silva Graciano
- Department of Plant Biology, Biology Institute, State University of Campinas (UNICAMP), Campinas, SP, Brazil
| | | | | | - Anete Pereira de Souza
- Molecular Biology and Genetic Engineering Center (CBMEG), University of Campinas (UNICAMP), Campinas, SP, Brazil.
- Department of Plant Biology, Biology Institute, State University of Campinas (UNICAMP), Campinas, SP, Brazil.
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Martínez-García PJ, Mas-Gómez J, Wegrzyn J, Botía JA. Bioinformatic approach for the discovery of cis-eQTL signals during fruit ripening of a woody species as grape (Vitis vinifera L.). Sci Rep 2022; 12:7481. [PMID: 35523985 PMCID: PMC9076688 DOI: 10.1038/s41598-022-11689-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 04/08/2022] [Indexed: 11/09/2022] Open
Abstract
Expression quantitative trait loci (eQTLs) are associations between genetic variants, such as Single Nucleotide Polymorphisms (SNPs), and gene expression. eQTLs are an important tool to understand the genetic variance of gene expression of complex phenotypes. eQTLs analyses are common in biomedical models but are scarce in woody crop species such as fruit trees or grapes. In this study, a comprehensive bioinformatic analysis was conducted leveraging with expression data from two different growth stages, around ripening onset, of 10 genotypes of grape (Vitis vinifera L.). A total of 2170 cis-eQTL were identified in 212 gene modulated at ripening onset. The 48% of these DEGs have a known function. Among the annotated protein-coding genes, terpene synthase, auxin-regulatory factors, GRFS, ANK_REP_REGION domain-containing protein, Kinesin motor domain-containing protein and flavonol synthase were noted. This new inventory of cis-eQTLs influencing gene expression during fruit ripening will be an important resource to examine variation for this trait and will help to elucidate the complex genetic architecture underlying this process in grape.
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Affiliation(s)
- Pedro José Martínez-García
- Department of Plant Breeding, Centro de Edafología y Biología Aplicada del Segura (CEBAS), CSIC, P.O. Box 164, 30100, Espinardo, Spain.
| | - Jorge Mas-Gómez
- Department of Plant Breeding, Centro de Edafología y Biología Aplicada del Segura (CEBAS), CSIC, P.O. Box 164, 30100, Espinardo, Spain
| | - Jill Wegrzyn
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, 06269, USA
| | - Juan A Botía
- Department of Neurodegenerative Disease, University College London, London, WC1N 3BG, UK.,Departamento de Ingeniería de la Información y las Comunicaciones, Universidad de Murcia, 30100, Murcia, Spain
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Schwope R, Magris G, Miculan M, Paparelli E, Celii M, Tocci A, Marroni F, Fornasiero A, De Paoli E, Morgante M. Open chromatin in grapevine marks candidate CREs and with other chromatin features correlates with gene expression. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 107:1631-1647. [PMID: 34219317 PMCID: PMC8518642 DOI: 10.1111/tpj.15404] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 06/24/2021] [Accepted: 06/25/2021] [Indexed: 05/14/2023]
Abstract
Vitis vinifera is an economically important crop and a useful model in which to study chromatin dynamics. In contrast to the small and relatively simple genome of Arabidopsis thaliana, grapevine contains a complex genome of 487 Mb that exhibits extensive colonization by transposable elements. We used Hi-C, ChIP-seq and ATAC-seq to measure how chromatin features correlate to the expression of 31 845 grapevine genes. ATAC-seq revealed the presence of more than 16 000 open chromatin regions, of which we characterize nearly 5000 as possible distal enhancer candidates that occur in intergenic space > 2 kb from the nearest transcription start site (TSS). A motif search identified more than 480 transcription factor (TF) binding sites in these regions, with those for TCP family proteins in greatest abundance. These open chromatin regions are typically within 15 kb from their nearest promoter, and a gene ontology analysis indicated that their nearest genes are significantly enriched for TF activity. The presence of a candidate cis-regulatory element (cCRE) > 2 kb upstream of the TSS, location in the active nuclear compartment as determined by Hi-C, and the enrichment of H3K4me3, H3K4me1 and H3K27ac at the gene are correlated with gene expression. Taken together, these results suggest that regions of intergenic open chromatin identified by ATAC-seq can be considered potential candidates for cis-regulatory regions in V. vinifera. Our findings enhance the characterization of a valuable agricultural crop, and help to clarify the understanding of unique plant biology.
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Affiliation(s)
- Rachel Schwope
- Dipartimento di Scienze AgroalimentariAmbientali e Animali (DI4A)UdineI‐33100Italy
- Istituto di Genomica ApplicataUdineI‐33100Italy
| | - Gabriele Magris
- Dipartimento di Scienze AgroalimentariAmbientali e Animali (DI4A)UdineI‐33100Italy
- Istituto di Genomica ApplicataUdineI‐33100Italy
| | - Mara Miculan
- Dipartimento di Scienze AgroalimentariAmbientali e Animali (DI4A)UdineI‐33100Italy
- Istituto di Genomica ApplicataUdineI‐33100Italy
- Present address:
Institute of Life SciencesScuola Superiore Sant'Anna PisaPisa56127Italy
| | - Eleonora Paparelli
- Dipartimento di Scienze AgroalimentariAmbientali e Animali (DI4A)UdineI‐33100Italy
- Istituto di Genomica ApplicataUdineI‐33100Italy
- Present address:
IGA Technology ServicesUdineI‐33100Italy
| | - Mirko Celii
- Dipartimento di Scienze AgroalimentariAmbientali e Animali (DI4A)UdineI‐33100Italy
- Istituto di Genomica ApplicataUdineI‐33100Italy
- Present address:
Center for Desert Agriculture, Biological and Environmental Sciences & Engineering Division (BESE)KAUSTThuwalMakkahSaudi Arabia
| | - Aldo Tocci
- Dipartimento di Scienze AgroalimentariAmbientali e Animali (DI4A)UdineI‐33100Italy
- Istituto di Genomica ApplicataUdineI‐33100Italy
- Scuola Internazionale Superiore di Studi AvanzatiTriesteFriuli‐Venezia GiuliaItaly
| | - Fabio Marroni
- Dipartimento di Scienze AgroalimentariAmbientali e Animali (DI4A)UdineI‐33100Italy
- Istituto di Genomica ApplicataUdineI‐33100Italy
| | - Alice Fornasiero
- Dipartimento di Scienze AgroalimentariAmbientali e Animali (DI4A)UdineI‐33100Italy
- Istituto di Genomica ApplicataUdineI‐33100Italy
- Present address:
Center for Desert Agriculture, Biological and Environmental Sciences & Engineering Division (BESE)KAUSTThuwalMakkahSaudi Arabia
| | - Emanuele De Paoli
- Dipartimento di Scienze AgroalimentariAmbientali e Animali (DI4A)UdineI‐33100Italy
| | - Michele Morgante
- Dipartimento di Scienze AgroalimentariAmbientali e Animali (DI4A)UdineI‐33100Italy
- Istituto di Genomica ApplicataUdineI‐33100Italy
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Fajardo TVM, Quecini V. Comparative transcriptome analyses between cultivated and wild grapes reveal conservation of expressed genes but extensive rewiring of co-expression networks. PLANT MOLECULAR BIOLOGY 2021; 106:1-20. [PMID: 33538951 DOI: 10.1007/s11103-021-01122-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 01/17/2021] [Indexed: 06/12/2023]
Abstract
The transcriptomes of wild and cultivated grapes consists of similar expressed genes but distinct wiring of co-expressed modules associated with environmental conditions. Grapevine is an important fruit crop worldwide, with high economic value and widespread distribution. Commercial production is based on Vitis vinifera, and, to a lesser extent, on hybrids with American grapes, such as V. labrusca. Wild grape relatives are important sources of resistance against biotic and abiotic factors; however, their global gene expression patterns remain poorly characterized. We associated genome-wide transcript profiling to phenotypic analyses to investigate the responses of cultivated and wild vines to vineyard conditions. The expressed genes in the Vitis reference transcriptome are largely shared by wild grapes, V. labrusca hybrids and vinifera cultivars. In contrast, significant differential regulation between wild and vinifera genotypes represents 80% of gene expression variation, regardless of the environment. In wild grapes, genes associated to regulatory processes are downregulated, whereas those involved in metabolic pathways are upregulated, in comparison to vinifera. Photosynthesis-related ontologies are overrepresented in the induced genes, in agreement with higher contents of chlorophyll in wild grapes. Co-regulated gene network analyses provide evidence of more complex transcriptome organization in vinifera. In wild grapes, genes involved in signaling pathways of stress-related hormones are overrepresented in modules associated with the environment. Consensus network analyses revealed high preservation within co-regulated gene modules between cultivated and wild grapes, but divergent relationships among the expression clusters. In conclusion, the distinct phenotypes of wild and cultivated grapes are underlain by differences in gene expression, but also by distinct higher-order organization of the transcriptome and contrasting association of co-expressed gene clusters with the environment.
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Affiliation(s)
- Thor V M Fajardo
- Embrapa Uva e Vinho (Brazilian Agricultural Research Corporation, Grape and Wine Research Center), Rua Livramento, 515, Bento Gonçalves, RS, 95701-008, Brazil
| | - Vera Quecini
- Embrapa Uva e Vinho (Brazilian Agricultural Research Corporation, Grape and Wine Research Center), Rua Livramento, 515, Bento Gonçalves, RS, 95701-008, Brazil.
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Zhong H, Zhang F, Zhou X, Pan M, Xu J, Hao J, Han S, Mei C, Xian H, Wang M, Ji J, Shi W, Wu X. Genome-Wide Identification of Sequence Variations and SSR Marker Development in the Munake Grape Cultivar. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.664835] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
The Munake grape cultivar produces uniquely flavored and high-quality fruits. Despite the numerous beneficial agronomic traits of Munake, there are few genetic resources available for this cultivar. To address this knowledge gap, the entire genome was sequenced using whole-genome sequencing approaches and compared with a Vitis vinifera L. reference genome. This study describes more than 3 million single nucleotide polymorphism (SNP), 300,000 insertion and deletion (InDel), 14,000 structural variation (SV), and 80,000 simple sequence repeat (SSR) markers (one SSR per 4.23 kb), as well as their primers. Among the SSRs, 44 SSR primer pairs were randomly selected and validated by polymerase chain reaction (PCR), allowing discrimination between the different Munake cultivar genotypes. The genetic data provided allow a deeper understanding of Munake cultivar genomic sequence and contribute to better knowledge of the genetic basis behind its key agronomic traits.
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Pirrello C, Zeilmaker T, Bianco L, Giacomelli L, Moser C, Vezzulli S. Mining Grapevine Downy Mildew Susceptibility Genes: A Resource for Genomics-Based Breeding and Tailored Gene Editing. Biomolecules 2021; 11:181. [PMID: 33525704 PMCID: PMC7912118 DOI: 10.3390/biom11020181] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Revised: 01/25/2021] [Accepted: 01/26/2021] [Indexed: 12/13/2022] Open
Abstract
Several pathogens continuously threaten viticulture worldwide. Until now, the investigation on resistance loci has been the main trend to understand the interaction between grapevine and the mildew causal agents. Dominantly inherited gene-based resistance has shown to be race-specific in some cases, to confer partial immunity, and to be potentially overcome within a few years since its introgression. Recently, on the footprint of research conducted in Arabidopsis, putative genes associated with downy mildew susceptibility have been discovered also in the grapevine genome. In this work, we deep-sequenced four putative susceptibility genes-namely VvDMR6.1, VvDMR6.2, VvDLO1, VvDLO2-in 190 genetically diverse grapevine genotypes to discover new sources of broad-spectrum and recessively inherited resistance. Identified Single Nucleotide Polymorphisms were screened in a bottleneck analysis from the genetic sequence to their impact on protein structure. Fifty-five genotypes showed at least one impacting mutation in one or more of the scouted genes. Haplotypes were inferred for each gene and two of them at the VvDMR6.2 gene were found significantly more represented in downy mildew resistant genotypes. The current results provide a resource for grapevine and plant genetics and could corroborate genomic-assisted breeding programs as well as tailored gene editing approaches for resistance to biotic stresses.
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Affiliation(s)
- Carlotta Pirrello
- Research and Innovation Centre, Edmund Mach Foundation, Via E. Mach 1, 38010 San Michele all’Adige, Italy; (C.P.); (L.B.); (L.G.); (C.M.)
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, Via delle Scienze 206, 33100 Udine, Italy
| | - Tieme Zeilmaker
- SciENZA Biotechnologies B.V., Sciencepark 904, 1098 XH Amsterdam, The Netherlands;
| | - Luca Bianco
- Research and Innovation Centre, Edmund Mach Foundation, Via E. Mach 1, 38010 San Michele all’Adige, Italy; (C.P.); (L.B.); (L.G.); (C.M.)
| | - Lisa Giacomelli
- Research and Innovation Centre, Edmund Mach Foundation, Via E. Mach 1, 38010 San Michele all’Adige, Italy; (C.P.); (L.B.); (L.G.); (C.M.)
- SciENZA Biotechnologies B.V., Sciencepark 904, 1098 XH Amsterdam, The Netherlands;
| | - Claudio Moser
- Research and Innovation Centre, Edmund Mach Foundation, Via E. Mach 1, 38010 San Michele all’Adige, Italy; (C.P.); (L.B.); (L.G.); (C.M.)
| | - Silvia Vezzulli
- Research and Innovation Centre, Edmund Mach Foundation, Via E. Mach 1, 38010 San Michele all’Adige, Italy; (C.P.); (L.B.); (L.G.); (C.M.)
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Varela A, Ibañez VN, Alonso R, Zavallo D, Asurmendi S, Gomez Talquenca S, Marfil CF, Berli FJ. Vineyard environments influence Malbec grapevine phenotypic traits and DNA methylation patterns in a clone-dependent way. PLANT CELL REPORTS 2021; 40:111-125. [PMID: 33068175 DOI: 10.1007/s00299-020-02617-w] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Accepted: 09/30/2020] [Indexed: 05/14/2023]
Abstract
By studying three cv. Malbec clones cultivated in two vineyards with contrasting environmental conditions, we demonstrated that DNA methylation has an important role in the phenotypic plasticity and that epigenetic modulation is clone-dependent. Clonal selection and vegetative propagation determine low genetic variability in grapevine cultivars, although it is common to observe diverse phenotypes. Environmental signals may induce epigenetic changes altering gene expression and phenotype. The range of phenotypes that a genotype expresses in different environments is known as phenotypic plasticity. DNA methylation is the most studied epigenetic mechanism, but only few works evaluated this novel source of variability in grapevines. In the present study, we analyzed the effects on phenotypic traits and epigenome of three Vitis vinifera cv. Malbec clones cultivated in two contrasting vineyards of Mendoza, Argentina. Anonymous genome regions were analyzed using methylation-sensitive amplified polymorphism (MSAP) markers. Clone-dependent phenotypic and epigenetic variability between vineyards were found. The clone that presented the clearer MSAP differentiation between vineyards was selected and analyzed through reduced representation bisulfite sequencing. Twenty-nine differentially methylated regions between vineyards were identified and associated to genes and/or promoters. We discuss about a group of genes related to hormones homeostasis and sensing that could provide a hint of the epigenetic role in the determination of the different phenotypes observed between vineyards and conclude that DNA methylation has an important role in the phenotypic plasticity and that epigenetic modulation is clone-dependent.
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Affiliation(s)
- Anabella Varela
- Facultad de Ciencias Agrarias, Instituto de Biología Agrícola de Mendoza, CONICET-Universidad Nacional de Cuyo, Alte. Brown 500, M5507, Chacras de Coria, Mendoza, Argentina
| | - Verónica N Ibañez
- Facultad de Ciencias Agrarias, Instituto de Biología Agrícola de Mendoza, CONICET-Universidad Nacional de Cuyo, Alte. Brown 500, M5507, Chacras de Coria, Mendoza, Argentina
| | - Rodrigo Alonso
- Catena Institute of Wine (CIW), Bodega Catena Zapata, Cobos w/n, M5509, Agrelo, Mendoza, Argentina
| | - Diego Zavallo
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Instituto Nacional de Tecnología Agropecuaria (INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), De Losos Reseros y N. Repetto w/n, Hurlingham B1686IGC, Buenos Aires, Argentina
| | - Sebastián Asurmendi
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Instituto Nacional de Tecnología Agropecuaria (INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), De Losos Reseros y N. Repetto w/n, Hurlingham B1686IGC, Buenos Aires, Argentina
| | | | - Carlos F Marfil
- Facultad de Ciencias Agrarias, Instituto de Biología Agrícola de Mendoza, CONICET-Universidad Nacional de Cuyo, Alte. Brown 500, M5507, Chacras de Coria, Mendoza, Argentina.
- Facultad de Ciencias Agrarias, Universidad Nacional de Cuyo, Alte. Brown 500, M5507, Chacras de Coria, Mendoza, Argentina.
| | - Federico J Berli
- Facultad de Ciencias Agrarias, Instituto de Biología Agrícola de Mendoza, CONICET-Universidad Nacional de Cuyo, Alte. Brown 500, M5507, Chacras de Coria, Mendoza, Argentina.
- Facultad de Ciencias Agrarias, Universidad Nacional de Cuyo, Alte. Brown 500, M5507, Chacras de Coria, Mendoza, Argentina.
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Corbin KR, Bolt B, Rodríguez López CM. Breeding for Beneficial Microbial Communities Using Epigenomics. Front Microbiol 2020; 11:937. [PMID: 32477316 PMCID: PMC7242621 DOI: 10.3389/fmicb.2020.00937] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2020] [Accepted: 04/20/2020] [Indexed: 02/03/2023] Open
Affiliation(s)
- Kendall R Corbin
- Environmental Epigenetics and Genetics Group, Department of Horticulture, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, United States.,Biosystems and Agricultural Engineering, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, United States
| | - Bridget Bolt
- Environmental Epigenetics and Genetics Group, Department of Horticulture, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, United States
| | - Carlos M Rodríguez López
- Environmental Epigenetics and Genetics Group, Department of Horticulture, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, United States
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