Molecular phylogeny of the genusHelix(Pulmonata: Helicidae)

High-throughput degraded DNA sequencing of subfossil shells of a critically endangered stenoendemic land snail in the Aegean

High-throughput sequencing has enabled the comprehensive genetic exploration of biological diversity, especially by using natural history collections to study hard-to-find, threatened or even extinct-in-the-wild taxa. Mollusk shells are under-exploited as a source for DNA-based approaches, despite their apparent advantages in the field of conservation genetics. More particularly, degraded DNA techniques combined with high-throughput sequencing have never been used to gain insights about the DNA preservation in land snail subfossil or historical shells. Here, we applied degraded DNA analysis on two historical shells of Levantina rechingeri, a stenoendemic Critically Endangered species that has never been found alive, in order to explore the patterns of DNA preservation on land snail shells originating from the eastern Mediterranean, as well as to infer its molecular phylogenetic placement. Our results showed that centuries to decades-old DNA from an empty shell collected in an Aegean island exhibits characteristic post-mortem damage patterns similar to those observed in ancient DNA from eastern Mediterranean terrestrial animals, setting a precedent for future museomics studies on taxa distributed in areas with similar climate. Finally, genome skimming of the empty shell allowed high coverage of multiple nuclear and mitochondrial loci, enabling the phylogenetic placement of the focal taxon, the re-evaluation of its taxonomic classification, and the revealing of a new Aegean land snail lineage, Aristina genus novum. This approach is a non-invasive way to sample DNA from threatened land snail species and suitable to study the evolutionary history of taxa with cryptic ecology, stenoendemics, or extinct-in-the-wild, as well as old museum specimens.

Diversity of Land Snail Tribe Helicini (Gastropoda: Stylommatophora: Helicidae): Where Do We Stand after 20 Years of Sequencing Mitochondrial Markers?

Sequences of mitochondrial genes revolutionized the understanding of animal diversity and continue to be an important tool in biodiversity research. In the tribe Helicini, a prominent group of the western Palaearctic land snail fauna, mitochondrial data accumulating since the 2000s helped to newly delimit genera, inform species-level taxonomy and reconstruct past range dynamics. We combined the published data with own unpublished sequences and provide a detailed overview of what they revealed about the diversity of the group. The delimitation of Helix is revised by placing Helix godetiana back in the genus and new synonymies are suggested within the genera Codringtonia and Helix. The spatial distribution of intraspecific mitochondrial lineages of several species is shown for the first time. Comparisons between species reveal considerable variation in distribution patterns of intraspecific lineages, from broad postglacial distributions to regions with a fine-scale pattern of allopatric lineage replacement. To provide a baseline for further research and information for anyone re-using the data, we thoroughly discuss the gaps in the current dataset, focusing on both taxonomic and geographic coverage. Thanks to the wealth of data already amassed and the relative ease with which they can be obtained, mitochondrial sequences remain an important source of information on intraspecific diversity over large areas and taxa.

A misinterpreted disjunction: the phylogenetic relationships of the North African land snail Gyrostomella (Gastropoda: Stylommatophora: Helicidae)

The North African helicid Gyrostomella has been considered closely related to Levantina, suggesting a disjunct distribution with a distribution gap of almost 2000 km in North Africa. We studied this disjunction and the systematics of Helicinae using molecular markers. Our analyses indicate an affiliation of Gyrostomella with the radiation of Helicinae in the Maghreb, especially with Maurohelix. The occurrence of Gyrostomella in Libya does not represent a western outpost of Helicini in North Africa, but an eastern outpost of the Maghreb radiation of Helicinae. The disjunction of Gyrostomella in Libya and Maurohelix in Algeria may be the result of a long-distance dispersal or may represent relicts of a larger range of the lineage in the past as a consequence of aridification processes in North Africa. Taking into account biogeographic patterns, we suggest a subdivision of Helicinae into four tribes: Allognathini, Helicini, Maculariini trib. nov. and Thebini. The Eastern Mediterranean Helicini diverged from the Western Mediterranean clade in the Eocene. The Western Mediterranean clade then split into Allognathini in the Iberian Peninsula, Maculariini in the region of the future western Alps and Thebini on terranes probably including the Rif-Betic and Kabylies blocks that now form part of the Maghreb region.

The introduction of the European Caucasotachea vindobonensis (Gastropoda: Helicidae) in North America, its origin and its potential range

We report the introduction of the central and eastern European helicid land snail Caucasotachea vindobonensis in North America. It was first recorded from Rensselaer County in the state of New York in 2015 by a community scientist. From 2016 to 2020, 14 additional occurrences in Rensselaer County, neighbouring Albany County and an imprecisely localized site in the Adirondack Mountains were recorded by community scientists. In 2020, the species was newly recorded at two sites in Schoharie County, NY, and at three sites in Québec, one of them approximately 700 km to the north of the initial record. Partial mitochondrial cox1 sequences from Rensselaer differ from an eastern Ukrainian haplotype only in a single substitution. Therefore, a Ukrainian origin for this introduction is likely, although not certain: the Rensselaer haplotype also differs in only two substitutions from a more widespread haplotype known from Ukraine, Hungary, Slovakia, Czechia, Serbia, and Bulgaria. An environmental niche model of the species based on occurrence data from central and eastern Europe indicated that a large region from the northern east coast to the midwestern United States is suitable for C. vindobonensis. The Canadian occurrences may indicate that the North American lineage is able to survive colder winters than predicted by the environmental niche model. Caucasotachea vindobonensis is not listed as a pest in Europe and it is unlikely to become an agricultural pest in North America as it prefers rotting plant material over living parts of plants, but its impact on native organisms can hardly be predicted.

Incorporating palaeogeography into ancestral area estimation can explain the disjunct distribution of land snails in Macaronesia and the Balearic Islands (Helicidae: Allognathini)

The systematics and biogeographical history of the Eastern Mediterranean and Macaronesian land snail tribe Allognathini (Helicidae: Helicinae) is investigated based on mitochondrial and nuclear DNA sequence data. Our molecular phylogenetic analyses indicate that the genus-group systematics of the tribe needs to be revised. We show for the first time that the narrow-range endemics Lampadia and Idiomela from the Madeira Archipelago belong to Allognathini and represent together the sister group of the diverse Canary Island Hemicycla radiation. We therefore suggest synonymising Lampadiini with Allognathini. Sister to these Macaronesian genera was the Balearic Island Allognathus radiation. Pseudotachea was not recovered as a monophyletic group and the two currently recognised species clustered in Iberus. Similarly, Adiverticula was not recovered as a monophyletic group and clustered in Hemicycla. We therefore suggest synonymising Pseudotachea with Iberus and Adiverticula with Hemicycla. The six genera in Allognathini, which we distinguish here (Cepaea, Iberus, Allognathus, Hemicycla, Idiomela and Lampadia), originated in Western to South-western Europe according to our ancestral area estimation and the fossil record. The disjunct distribution of the Balearic Islands and Macaronesian sister clades and the mainly Iberian Iberus clade that separated earlier can be explained by the separation of the Betic-Rif System from the Iberian Peninsula during the late Oligocene to early Miocene, along with independent Miocene dispersals to the Balearic Islands and Macaronesia from the Iberian Peninsula, where the ancestral lineage became extinct.

Speciation across the Tree of Life

Much of what we know about speciation comes from detailed studies of well-known model systems. Although there have been several important syntheses on speciation, few (if any) have explicitly compared speciation among major groups across the Tree of Life. Here, we synthesize and compare what is known about key aspects of speciation across taxa, including bacteria, protists, fungi, plants, and major animal groups. We focus on three main questions. Is allopatric speciation predominant across groups? How common is ecological divergence of sister species (a requirement for ecological speciation), and on what niche axes do species diverge in each group? What are the reproductive isolating barriers in each group? Our review suggests the following patterns. (i) Based on our survey and projected species numbers, the most frequent speciation process across the Tree of Life may be co-speciation between endosymbiotic bacteria and their insect hosts. (ii) Allopatric speciation appears to be present in all major groups, and may be the most common mode in both animals and plants, based on non-overlapping ranges of sister species. (iii) Full sympatry of sister species is also widespread, and may be more common in fungi than allopatry. (iv) Full sympatry of sister species is more common in some marine animals than in terrestrial and freshwater ones. (v) Ecological divergence of sister species is widespread in all groups, including ~70% of surveyed species pairs of plants and insects. (vi) Major axes of ecological divergence involve species interactions (e.g. host-switching) and habitat divergence. (vii) Prezygotic isolation appears to be generally more widespread and important than postzygotic isolation. (viii) Rates of diversification (and presumably speciation) are strikingly different across groups, with the fastest rates in plants, and successively slower rates in animals, fungi, and protists, with the slowest rates in prokaryotes. Overall, our study represents an initial step towards understanding general patterns in speciation across all organisms.

Geographic isolation and human-assisted dispersal in land snails: a Mediterranean story of Helix borealis and its relatives (Gastropoda: Stylommatophora: Helicidae)

The Mediterranean basin is a major centre for land-snail diversity, with many localized endemics, but there are also species widely spread by humans. Both endemics and introductions can be found in the snail genus Helix, which comprises many large-bodied species used for human consumption in the past and present. The Mediterranean clade of Helix is currently distributed throughout this region, but the phylogenetic and biogeographic relationships among its forms from different parts of the basin remain enigmatic. The reasons include insufficient sampling, taxa with unclear taxonomy and a significant impact of human-assisted transport obscuring the natural distribution of phylogenetic lineages. We provide evidence that European and Anatolian populations of H. cincta and its relatives are not native to those regions, but originate from the northern Levant. These results have implications for taxonomy of the genus, but also for the understanding of its evolutionary history. We posit that the Mediterranean clade consists of four geographically separated groups, which diversified in Northern Africa, the Apennine Peninsula and Corsica, the Aegean and Greece, and the northern Levant. This geographic pattern has been subsequently blurred by multiple instances of human-assisted dispersal. However, revealing the founding populations with certainty requires thorough sampling in currently inaccessible countries.

Climatic oscillations during the Mio/Pliocene epochs induced cladogenesis in the terrestrial snail genus Gittenedouardia (Mollusca: Gastropoda: Cerastidae) from South Africa

In South Africa, the terrestrial snail genus Gittenedouardia is the most species-rich member of the Cerastidae, where it is primarily distributed in the highly fragmented Afrotemperate and Indian Ocean coastal belt (IOCB) forest biomes. Phylogenetic relationships and cladogenetic events within the genus remain unstudied. In this respect, we reconstructed a dated phylogeny for eight Gittenedouardia species, and two populations identified to genus level using a combined mitochondrial (16S rRNA and COI) DNA sequencing dataset analysed using Bayesian inference and Maximum Likelihood framework. Furthermore, we investigated the population genetic substructure of the three widely distributed species (Gittenedouardia spadicea, G. natalensis and G. arenicola) for the COI locus, while also subsampling these species using the nuclear DNA ITS-2 locus. Phylogenetic results based on the combined mtDNA dataset supported the monophyly of Gittenedouardia and revealed three major clades and deep genetic structure among the three widely distributed species. Divergence-time estimates suggest that diversification within Gittenedouardia occurred during the middle Miocene/late Pliocene, a period characterised by a decrease in precipitation and the contraction of the Afrotemperate and IOCB forest biomes. We used two species delimitation methods, (PTP and STACEY) to infer putative species in G. spadicea, G. natalensis and G. arenicola. The two methods recovered a large number of evolutionary distinct units, with minimal consensus in the exact number of lineages. Our findings suggest the presence of undescribed diversity, necessitating the need for taxonomic revisionary work on Gittenedouardia. We discuss the climatic factors which may have contributed to the observed cladogenesis and compare our results with other studies of forest dwelling faunal taxa.

On Helix grisea Linnaeus, 1758 and the Helix species described by Carl Linnaeus and Otto Friedrich Müller

Helix grisea was described by Linnaeus in 1758, and its identity has been doubtful ever since. The name features in the early taxonomic history of some other species of Helix sensu lato. Here I provide a summary of the history of its use. Mostly, the name was applied for the widespread species now accepted as Cornu aspersum (O. F. Müller, 1774), while a few authors used it for Helix cincta O. F. Müller, 1774. Neither usage is in line with the Linnaeus' account. Based on a figure to which Linnaeus referred, I propose that the name originally applied to a species now known as Helix lucorum Linnaeus, 1758 and as the first reviser, I give precedence to H. lucorum over H. grisea. In respect to C. aspersum, H. grisea cannot take precedence because of reversal of precedence according to Art. 23.9, and is pronounced a nomen oblitum. The case of H. grisea illustrates the importance of Müller's work for the taxonomy of the genus. In this respect it is regrettable that some of his species, including C. aspersum, lack a known and well documented type specimens.

The complete mitogenome of Helixpomatia and the basal phylogeny of Helicinae (Gastropoda, Stylommatophora, Helicidae)

A complete mitochondrial genome of the Roman snail Helixpomatia Linnaeus, 1758 has been sequenced. The length and gene order correspond to that of other available helicid mitogenomes. We used the mitogenome sequence to reappraise the relationships among the four presumed principal groups of the helicid subfamily Helicinae. The results support the idea that the subfamily is divided between two western Palaearctic diversification centres: Iberian Peninsula and western Maghreb in the west, and Anatolia, the Aegean and Caucasus in the east. One group, the tribe Helicini, diversified in the east and the remaining three currently recognised tribes in the west. However, the exact relationships among lineages of the non-Helicini tribes could not be resolved.