1
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Formation of a Fully Anionic Supported Lipid Bilayer to Model Bacterial Inner Membrane for QCM-D Studies. MEMBRANES 2022; 12:membranes12060558. [PMID: 35736265 PMCID: PMC9229009 DOI: 10.3390/membranes12060558] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 05/18/2022] [Accepted: 05/25/2022] [Indexed: 12/04/2022]
Abstract
Supported lipid bilayers (SLBs) on quartz crystals are employed as versatile model systems for studying cell membrane behavior with the use of the highly sensitive technique of quartz crystal microbalance with dissipation monitoring (QCM-D). Since the lipids constituting cell membranes vary from predominantly zwitterionic lipids in mammalian cells to predominantly anionic lipids in the inner membrane of Gram-positive bacteria, the ability to create SLBs of different lipid compositions is essential for representing different cell membranes. While methods to generate stable zwitterionic SLBs and zwitterionic-dominant mixed zwitterionic–anionic SLBs on quartz crystals have been well established, there are no reports of being able to form predominantly or fully anionic SLBs. We describe here a method for forming entirely anionic SLBs by treating the quartz crystal with cationic (3-aminopropyl) trimethoxysilane (APTMS). The formation of the anionic SLB was tracked using QCM-D by monitoring the adsorption of anionic lipid vesicles to a quartz surface and subsequent bilayer formation. Anionic egg L-α-phosphatidylglycerol (PG) vesicles adsorbed on the surface-treated quartz crystal, but did not undergo the vesicle-to-bilayer transition to create an SLB. However, when PG was mixed with 10–40 mole% 1-palmitoyl-2-hydroxy-sn-glycero-3-phospho-(1′-rac-glycerol) (LPG), the mixed vesicles led to the formation of stable SLBs. The dynamics of SLB formation monitored by QCM-D showed that while SLB formation by zwitterionic lipids followed a two-step process of vesicle adsorption followed by the breakdown of the adsorbed vesicles (which in turn is a result of multiple events) to create the SLB, the PG/LPG mixed vesicles ruptured immediately on contacting the quartz surface resulting in a one-step process of SLB formation. The QCM-D data also enabled the quantitative characterization of the SLB by allowing estimation of the lipid surface density as well as the thickness of the hydrophobic region of the SLB. These fully anionic SLBs are valuable model systems to conduct QCM-D studies of the interactions of extraneous substances such as antimicrobial peptides and nanoparticles with Gram-positive bacterial membranes.
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2
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Abstract
AbstractThe complex composition of bacterial membranes has a significant impact on the understanding of pathogen function and their development towards antibiotic resistance. In addition to the inherent complexity and biosafety risks of studying biological pathogen membranes, the continual rise of antibiotic resistance and its significant economical and clinical consequences has motivated the development of numerous in vitro model membrane systems with tuneable compositions, geometries, and sizes. Approaches discussed in this review include liposomes, solid-supported bilayers, and computational simulations which have been used to explore various processes including drug-membrane interactions, lipid-protein interactions, host–pathogen interactions, and structure-induced bacterial pathogenesis. The advantages, limitations, and applicable analytical tools of all architectures are summarised with a perspective for future research efforts in architectural improvement and elucidation of resistance development strategies and membrane-targeting antibiotic mechanisms.
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3
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Yoneda T, Tanimoto Y, Takagi D, Morigaki K. Photosynthetic Model Membranes of Natural Plant Thylakoid Embedded in a Patterned Polymeric Lipid Bilayer. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:5863-5871. [PMID: 32390435 DOI: 10.1021/acs.langmuir.0c00613] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Thylakoid membranes in the chloroplast of plants, algae, and cyanobacteria are the powerhouse of photosynthesis, capturing solar energy and converting it into chemical energy. Although their structures and functions have been extensively studied, the intrinsically heterogeneous and dynamic nature of the membrane structures is still not fully understood. Investigating native thylakoid membranes in vivo is difficult due to their small size and limited external access to the chloroplast interior, while the bottom-up approaches based on model systems have been hampered by the sheer complexity of the native membrane. Here, we try to fill the gap by reconstituting the whole thylakoid membrane into a patterned substrate-supported planer bilayer. A mixture of thylakoid membrane purified from spinach leaves and synthetic phospholipid 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) vesicles spontaneously formed a laterally continuous and fluid two-dimensional (2D) membrane in the scaffold of the patterned polymeric bilayer. Chlorophyll fluorescence arising from photosystem II (PSII) recovered after photobleaching, suggesting that the membrane components are laterally mobile. The reversible changes of chlorophyll fluorescence in the presence of the electron acceptors and/or inhibitors indicated that the electron transfer activity of PSII was retained. Furthermore, we confirmed the electron transfer activity of photosystem I (PSI) by observing the generation of nicotinamide adenine dinucleotide phosphate (NADPH) in the presence of water-soluble ferredoxin and ferredoxin-NADP+ reductase. The lateral mobility of membrane-bound molecules and the functional reconstitution of major photosystems provide evidence that our hybrid thylakoid membranes could be an excellent experimental platform to study the 2D molecular organization and machinery of photosynthesis.
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Affiliation(s)
- Takuro Yoneda
- Graduate School of Agricultural Science, Kobe University, Rokkodaicho 1-1, Nada, Kobe 657-8501, Japan
| | - Yasushi Tanimoto
- Graduate School of Agricultural Science, Kobe University, Rokkodaicho 1-1, Nada, Kobe 657-8501, Japan
| | - Daisuke Takagi
- Graduate School of Agricultural Science, Kobe University, Rokkodaicho 1-1, Nada, Kobe 657-8501, Japan
- Graduate School of Agricultural Science, Tohoku University, Aoba 468-1, Aranaki, Aoba, Sendai 980-0845, Japan
| | - Kenichi Morigaki
- Graduate School of Agricultural Science, Kobe University, Rokkodaicho 1-1, Nada, Kobe 657-8501, Japan
- Biosignal Research Center, Kobe University, Rokkodaicho 1-1, Nada, Kobe 657-8501, Japan
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4
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Hybrid Lipid-Polymer Bilayers: pH-Mediated Interactions between Hybrid Vesicles and Glass. Polymers (Basel) 2020; 12:polym12040745. [PMID: 32231031 PMCID: PMC7240632 DOI: 10.3390/polym12040745] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 03/22/2020] [Accepted: 03/23/2020] [Indexed: 02/03/2023] Open
Abstract
One practical approach towards robust and stable biomimetic platforms is to generate hybrid bilayers that incorporate both lipids and block co-polymer amphiphiles. The currently limited number of reports on the interaction of glass surfaces with hybrid lipid and polymer vesicles—DOPC mixed with amphiphilic poly(ethylene oxide-b-butadiene) (PEO-PBd)—describe substantially different conclusions under very similar conditions (i.e., same pH). In this study, we varied vesicle composition and solution pH in order to generate a broader picture of spontaneous hybrid lipid/polymer vesicle interactions with rigid supports. Using quartz crystal microbalance with dissipation (QCM-D), we followed the interaction of hybrid lipid-polymer vesicles with borosilicate glass as a function of pH. We found pH-dependent adsorption/fusion of hybrid vesicles that accounts for some of the contradictory results observed in previous studies. Our results show that the formation of hybrid lipid-polymer bilayers is highly pH dependent and indicate that the interaction between glass surfaces and hybrid DOPC/PEO-PBd can be tuned with pH.
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5
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Solvent-assisted preparation of supported lipid bilayers. Nat Protoc 2019; 14:2091-2118. [DOI: 10.1038/s41596-019-0174-2] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Accepted: 04/02/2019] [Indexed: 11/08/2022]
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6
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Nomura K, Yamaguchi T, Mori S, Fujikawa K, Nishiyama KI, Shimanouchi T, Tanimoto Y, Morigaki K, Shimamoto K. Alteration of Membrane Physicochemical Properties by Two Factors for Membrane Protein Integration. Biophys J 2019; 117:99-110. [PMID: 31164197 PMCID: PMC6626835 DOI: 10.1016/j.bpj.2019.05.014] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Revised: 05/08/2019] [Accepted: 05/14/2019] [Indexed: 12/01/2022] Open
Abstract
After a nascent chain of a membrane protein emerges from the ribosomal tunnel, the protein is integrated into the cell membrane. This process is controlled by a series of proteinaceous molecular devices, such as signal recognition particles and Sec translocons. In addition to these proteins, we discovered two endogenous components regulating membrane protein integration in the inner membrane of Escherichia coli. The integration is blocked by diacylglycerol (DAG), whereas the blocking is relieved by a glycolipid named membrane protein integrase (MPIase). Here, we investigated the influence of these integration-blocking and integration-promoting factors on the physicochemical properties of membrane lipids via solid-state NMR and fluorescence measurements. These factors did not have destructive effects on membrane morphology because the membrane maintained its lamellar structure and did not fuse in the presence of DAG and/or MPIase at their effective concentrations. We next focused on membrane flexibility. DAG did not affect the mobility of the membrane surface, whereas the sugar chain in MPIase was highly mobile and enhanced the flexibility of membrane lipid headgroups. Comparison with a synthetic MPIase analog revealed the effects of the long sugar chain on membrane properties. The acyl chain order inside the membrane was increased by DAG, whereas the increase was cancelled by the addition of MPIase. MPIase also loosened the membrane lipid packing. Focusing on the transbilayer movement, MPIase reduced the rapid flip-flop motion of DAG. On the other hand, MPIase could not compensate for the diminished lateral diffusion by DAG. These results suggest that by manipulating the membrane lipids dynamics, DAG inhibits the protein from contacting the inner membrane, whereas the flexible long sugar chain of MPIase increases the opportunity for interaction between the membrane and the protein, leading to membrane integration of the newly formed protein.
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Affiliation(s)
- Kaoru Nomura
- Bioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan.
| | - Toshiyuki Yamaguchi
- Bioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan
| | - Shoko Mori
- Bioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan
| | - Kohki Fujikawa
- Bioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan
| | - Ken-Ichi Nishiyama
- Department of Biological Chemistry and Food Sciences, Faculty of Agriculture, Iwate University, Morioka, Iwate, Japan
| | | | - Yasushi Tanimoto
- Graduate School of Agricultural Science, Kobe University, Kobe, Japan
| | | | - Keiko Shimamoto
- Bioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan.
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7
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Pace HP, Hannestad JK, Armonious A, Adamo M, Agnarsson B, Gunnarsson A, Micciulla S, Sjövall P, Gerelli Y, Höök F. Structure and Composition of Native Membrane Derived Polymer-Supported Lipid Bilayers. Anal Chem 2018; 90:13065-13072. [PMID: 30350611 DOI: 10.1021/acs.analchem.8b04110] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Over the last two decades, supported lipid bilayers (SLBs) have been extensively used as model systems to study cell membrane structure and function. While SLBs have been traditionally produced from simple lipid mixtures, there has been a recent surge in compositional complexity to better mimic cellular membranes and thereby bridge the gap between classic biophysical approaches and cell experiments. To this end, native cellular membrane derived SLBs (nSLBs) have emerged as a new category of SLBs. As a new type of biomimetic material, an analytical workflow must be designed to characterize its molecular composition and structure. Herein, we demonstrate how a combination of fluorescence microscopy, neutron reflectometry, and secondary ion mass spectrometry offers new insights on structure, composition, and quality of nSLB systems formed using so-called hybrid vesicles, which are a mixture of native membrane material and synthetic lipids. With this approach, we demonstrate that the nSLB formed a continuous structure with complete mixing of the synthetic and native membrane components and a molecular stoichiometry that essentially mirrors that of the hybrid vesicles. Furthermore, structural investigation of the nSLB revealed that PEGylated lipids do not significantly thicken the hydration layer between the bilayer and substrate when on silicon substrates; however, nSLBs do have more topology than their simpler, purely synthetic counterparts. Beyond new insights regarding the structure and composition of nSLB systems, this work also serves to guide future researchers in producing and characterizing nSLBs from their cellular membrane of choice.
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Affiliation(s)
- Hudson P Pace
- Department of Physics , Chalmers University of Technology , SE-412 96 Göteborg , Sweden
| | - Jonas K Hannestad
- Department of Physics , Chalmers University of Technology , SE-412 96 Göteborg , Sweden.,Biosciences and Materials , Research Institutes of Sweden , SE-501 15 Borås , Sweden
| | - Antonious Armonious
- Department of Physics , Chalmers University of Technology , SE-412 96 Göteborg , Sweden
| | - Marco Adamo
- Institute Laue-Langevin , 38000 Grenoble , France.,Department of Chemical Engineering , Imperial College London , London SW7 2AZ , United Kingdom
| | - Bjorn Agnarsson
- Department of Physics , Chalmers University of Technology , SE-412 96 Göteborg , Sweden
| | - Anders Gunnarsson
- Discovery Sciences, IMED Biotech Unit , AstraZeneca , Gothenburg , Sweden
| | - Samantha Micciulla
- Institute Laue-Langevin , 38000 Grenoble , France.,Max Planck Institute of Colloids and Interfaces , 14476 Potsdam , Germany
| | - Peter Sjövall
- Department of Physics , Chalmers University of Technology , SE-412 96 Göteborg , Sweden.,Biosciences and Materials , Research Institutes of Sweden , SE-501 15 Borås , Sweden
| | - Yuri Gerelli
- Institute Laue-Langevin , 38000 Grenoble , France
| | - Fredrik Höök
- Department of Physics , Chalmers University of Technology , SE-412 96 Göteborg , Sweden
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8
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Peerboom N, Schmidt E, Trybala E, Block S, Bergström T, Pace HP, Bally M. Cell Membrane Derived Platform To Study Virus Binding Kinetics and Diffusion with Single Particle Sensitivity. ACS Infect Dis 2018; 4:944-953. [PMID: 29688001 DOI: 10.1021/acsinfecdis.7b00270] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Discovery and development of new antiviral therapies essentially rely on two key factors: an in-depth understanding of the mechanisms involved in viral infection and the development of fast and versatile drug screening platforms. To meet those demands, we present a biosensing platform to probe virus-cell membrane interactions on a single particle level. Our method is based on the formation of supported lipid bilayers from cell membrane material. Using total internal reflection fluorescence microscopy, we report the contribution of viral and cellular components to the interaction kinetics of herpes simplex virus type 1 with the cell membrane. Deletion of glycoprotein C (gC), the main viral attachment glycoprotein, or deletion of heparan sulfate, an attachment factor on the cell membrane, leads to an overall decrease in association of virions to the membrane and faster dissociation from the membrane. In addition to this, we perform binding inhibition studies using the antiviral compound heparin to estimate its IC50 value. Finally, single particle tracking is used to characterize the diffusive behavior of the virus particles on the supported lipid bilayers. Altogether, our results promote this platform as a complement to existing bioanalytical assays, being at the interface between simplified artificial membrane models and live cell experiments.
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Affiliation(s)
- Nadia Peerboom
- Department of Physics, Chalmers University of Technology, Fysikgränd 3, 412 96 Göteborg, Sweden
| | - Eneas Schmidt
- Department of Physics, Chalmers University of Technology, Fysikgränd 3, 412 96 Göteborg, Sweden
| | - Edward Trybala
- Department of Infectious Diseases, Section for Clinical Virology, Institute of Biomedicine, University of Gothenburg, Guldhedsgatan 10B, 413 46 Göteborg, Sweden
| | - Stephan Block
- Department of Chemistry and Biochemistry, Freie Universität Berlin, Takustraße 3, 141 95 Berlin, Germany
| | - Tomas Bergström
- Department of Infectious Diseases, Section for Clinical Virology, Institute of Biomedicine, University of Gothenburg, Guldhedsgatan 10B, 413 46 Göteborg, Sweden
| | - Hudson P. Pace
- Department of Physics, Chalmers University of Technology, Fysikgränd 3, 412 96 Göteborg, Sweden
| | - Marta Bally
- Department of Physics, Chalmers University of Technology, Fysikgränd 3, 412 96 Göteborg, Sweden
- Wallenberg Centre for Molecular Medicine and Department of Clinical Microbiology, Umeå University, NUS Målpunkt R, 901 85 Umeå, Sweden
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9
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Spherical-supported membranes as platforms for screening against membrane protein targets. Anal Biochem 2018; 549:58-65. [PMID: 29545094 PMCID: PMC5948183 DOI: 10.1016/j.ab.2018.03.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2018] [Revised: 03/09/2018] [Accepted: 03/12/2018] [Indexed: 11/23/2022]
Abstract
Screening assays performed against membrane protein targets (e.g. phage display) are hampered by issues arising from protein expression and purification, protein stability in detergent solutions and epitope concealment by detergent micelles. Here, we have studied a fast and simple method to improve screening against membrane proteins: spherical-supported bilayer lipid membranes (“SSBLM”). SSBLMs can be quickly isolated via low-speed centrifugation and redispersed in liquid solutions while presenting the target protein in a native-like lipid environment. To provide proof-of-concept, SSBLMs embedding the polytopic bacterial nucleoside transporter NupC were assembled on 100- and 200 nm silica particles. To test specific binding of antibodies, NupC was tagged with a poly-histidine epitope in one of its central loops between two transmembrane helices. Fluorescent labelling, small angle X-ray scattering (SAXS) and cryo-electron microscopy (cryo-EM) were used to monitor formation of the SSBLMs. Specific binding of an anti-his antibody and a gold-nitrilotriacetic acid (NTA) conjugate probe was confirmed with ELISAs and cryo-EM. SSBLMs for screening could be made with purified and lipid reconstituted NupC, as well as crude bacterial membrane extracts. We conclude that SSBLMs are a promising new means of presenting membrane protein targets for (biomimetic) antibody screening in a native-like lipid environment.
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10
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Bao P, Cartron ML, Sheikh KH, Johnson BRG, Hunter CN, Evans SD. Controlling transmembrane protein concentration and orientation in supported lipid bilayers. Chem Commun (Camb) 2018; 53:4250-4253. [PMID: 28361139 DOI: 10.1039/c7cc01023k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The trans-membrane protein - proteorhodopsin (pR) has been incorporated into supported lipid bilayers (SLB). In-plane electric fields have been used to manipulate the orientation and concentration of these proteins, within the SLB, through electrophoresis leading to a 25-fold increase concentration of pR.
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Affiliation(s)
- P Bao
- School of Physics & Astronomy, University of Leeds, LS2 9JT, UK.
| | - M L Cartron
- Department of Molecular Biology & Biotechnology, University of Sheffield, S10 2TH, UK
| | - K H Sheikh
- School of Biomedical Science, University of Leeds, LS2 9JT, UK
| | - B R G Johnson
- School of Physics & Astronomy, University of Leeds, LS2 9JT, UK.
| | - C N Hunter
- Department of Molecular Biology & Biotechnology, University of Sheffield, S10 2TH, UK
| | - S D Evans
- School of Physics & Astronomy, University of Leeds, LS2 9JT, UK.
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11
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Chiang PC, Tanady K, Huang LT, Chao L. Rupturing Giant Plasma Membrane Vesicles to Form Micron-sized Supported Cell Plasma Membranes with Native Transmembrane Proteins. Sci Rep 2017; 7:15139. [PMID: 29123132 PMCID: PMC5680215 DOI: 10.1038/s41598-017-15103-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Accepted: 10/20/2017] [Indexed: 01/15/2023] Open
Abstract
Being able to directly obtain micron-sized cell blebs, giant plasma membrane vesicles (GPMVs), with native membrane proteins and deposit them on a planar support to form supported plasma membranes could allow the membrane proteins to be studied by various surface analytical tools in native-like bilayer environments. However, GPMVs do not easily rupture on conventional supports because of their high protein and cholesterol contents. Here, we demonstrate the possibility of using compression generated by the air-water interface to efficiently rupture GPMVs to form micron-sized supported membranes with native plasma membrane proteins. We demonstrated that not only lipid but also a native transmembrane protein in HeLa cells, Aquaporin 3 (AQP3), is mobile in the supported membrane platform. This convenient method for generating micron-sized supported membrane patches with mobile native transmembrane proteins could not only facilitate the study of membrane proteins by surface analytical tools, but could also enable us to use native membrane proteins for bio-sensing applications.
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Affiliation(s)
- Po-Chieh Chiang
- Department of Chemical Engineering, National Taiwan University, Taipei, Taiwan
| | - Kevin Tanady
- Department of Chemical Engineering, National Taiwan University, Taipei, Taiwan
| | - Ling-Ting Huang
- Department of Chemical Engineering, National Taiwan University, Taipei, Taiwan
| | - Ling Chao
- Department of Chemical Engineering, National Taiwan University, Taipei, Taiwan.
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12
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Hinman SS, Ruiz CJ, Cao Y, Ma MC, Tang J, Laurini E, Posocco P, Giorgio S, Pricl S, Peng L, Cheng Q. Mix and Match: Coassembly of Amphiphilic Dendrimers and Phospholipids Creates Robust, Modular, and Controllable Interfaces. ACS APPLIED MATERIALS & INTERFACES 2017; 9:1029-1035. [PMID: 27957833 PMCID: PMC6041472 DOI: 10.1021/acsami.6b11556] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Self-assembly of supramolecular structures has become an attractive means to create new biologically inspired materials and interfaces. We report the first robust hybrid bilayer systems readily coassembled from amphiphilic dendrimers and a naturally occurring phospholipid. Both concentration and generation of the dendrimers have direct impacts on the biophysical properties of the coassemblies. Raising the dendrimer concentration increases the hybrid bilayer stability, while changes in the generation and the concentration of the embedded dendrimers impact the fluidity of the coassembled systems. Multivalent dendrimer amine terminals allow for nondestructive in situ derivatization, providing a convenient approach to decorate and modulate the local environment of the hybrid bilayer. The coassembly of lipid/dendrimer interfaces offers a unique platform for the creation of hybrid systems with modular and precisely controllable behavior for further applications in sensing and drug delivery.
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Affiliation(s)
- Samuel S. Hinman
- Environmental Toxicology, University of California, Riverside, Riverside, California 92521, United States
| | - Charles J. Ruiz
- Department of Chemistry, University of California, Riverside, Riverside, California 92521, United States
| | - Yu Cao
- Aix-Marseille Université, CNRS, Centre Interdisciplinaire de Nanoscience de Marseille, UMR 7325, Equipe Labellisée Ligue Contre le Cancer, 13288 Marseille, France
| | - Meghann C. Ma
- Department of Chemistry, University of California, Riverside, Riverside, California 92521, United States
| | - Jingjie Tang
- Aix-Marseille Université, CNRS, Centre Interdisciplinaire de Nanoscience de Marseille, UMR 7325, Equipe Labellisée Ligue Contre le Cancer, 13288 Marseille, France
| | - Erik Laurini
- Molecular Simulation Engineering (MOSE) Laboratory, Department of Engineering and Architecture (DEA), Trieste University, 34127 Trieste, Italy
| | - Paola Posocco
- Molecular Simulation Engineering (MOSE) Laboratory, Department of Engineering and Architecture (DEA), Trieste University, 34127 Trieste, Italy
| | - Suzanne Giorgio
- Aix-Marseille Université, CNRS, Centre Interdisciplinaire de Nanoscience de Marseille, UMR 7325, Equipe Labellisée Ligue Contre le Cancer, 13288 Marseille, France
| | - Sabrina Pricl
- Molecular Simulation Engineering (MOSE) Laboratory, Department of Engineering and Architecture (DEA), Trieste University, 34127 Trieste, Italy
| | - Ling Peng
- Aix-Marseille Université, CNRS, Centre Interdisciplinaire de Nanoscience de Marseille, UMR 7325, Equipe Labellisée Ligue Contre le Cancer, 13288 Marseille, France
| | - Quan Cheng
- Environmental Toxicology, University of California, Riverside, Riverside, California 92521, United States
- Department of Chemistry, University of California, Riverside, Riverside, California 92521, United States
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13
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Hsia CY, Chen L, Singh RR, DeLisa MP, Daniel S. A Molecularly Complete Planar Bacterial Outer Membrane Platform. Sci Rep 2016; 6:32715. [PMID: 27600663 PMCID: PMC5013322 DOI: 10.1038/srep32715] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2016] [Accepted: 08/08/2016] [Indexed: 12/30/2022] Open
Abstract
The bacterial outer membrane (OM) is a barrier containing membrane proteins and liposaccharides that fulfill crucial functions for Gram-negative bacteria. With the advent of drug-resistant bacteria, it is necessary to understand the functional role of this membrane and its constituents to enable novel drug designs. Here we report a simple method to form an OM-like supported bilayer (OM-SB), which incorporates native lipids and membrane proteins of gram-negative bacteria from outer membrane vesicles (OMVs). We characterize the formation of OM-SBs using quartz crystal microbalance with dissipation (QCM-D) and fluorescence microscopy. We show that the orientation of proteins in the OM-SB matches the native bacterial membrane, preserving the characteristic asymmetry of these membranes. As a demonstration of the utility of the OM-SB platform, we quantitatively measure antibiotic interactions between OM-SBs and polymyxin B, a cationic peptide used to treat Gram-negative infections. This data enriches understanding of the antibacterial mechanism of polymyxin B, including disruption kinetics and changes in membrane mechanical properties. Combining OM-SBs with microfluidics will enable higher throughput screening of antibiotics. With a broader view, we envision that a molecularly complete membrane-scaffold could be useful for cell-free applications employing engineered membrane proteins in bacterial membranes for myriad technological purposes.
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Affiliation(s)
- Chih-Yun Hsia
- School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, USA
| | - Linxiao Chen
- School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, USA
| | - Rohit R Singh
- School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, USA
| | - Matthew P DeLisa
- School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, USA
| | - Susan Daniel
- School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, USA
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14
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Formation of planar unilamellar phospholipid membranes on oxidized gold substrate. Biointerphases 2016; 11:031017. [DOI: 10.1116/1.4963188] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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15
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Understanding the formation of supported lipid bilayers via vesicle fusion—A case that exemplifies the need for the complementary method approach (Review). Biointerphases 2016; 11:020801. [DOI: 10.1116/1.4944830] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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16
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Lind TK, Wacklin H, Schiller J, Moulin M, Haertlein M, Pomorski TG, Cárdenas M. Formation and Characterization of Supported Lipid Bilayers Composed of Hydrogenated and Deuterated Escherichia coli Lipids. PLoS One 2015; 10:e0144671. [PMID: 26658241 PMCID: PMC4676697 DOI: 10.1371/journal.pone.0144671] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2015] [Accepted: 11/20/2015] [Indexed: 01/26/2023] Open
Abstract
Supported lipid bilayers are widely used for sensing and deciphering biomolecular interactions with model cell membranes. In this paper, we present a method to form supported lipid bilayers from total lipid extracts of Escherichia coli by vesicle fusion. We show the validity of this method for different types of extracts including those from deuterated biomass using a combination of complementary surface sensitive techniques; quartz crystal microbalance, neutron reflection and atomic force microscopy. We find that the head group composition of the deuterated and the hydrogenated lipid extracts is similar (approximately 75% phosphatidylethanolamine, 13% phosphatidylglycerol and 12% cardiolipin) and that both samples can be used to reconstitute high-coverage supported lipid bilayers with a total thickness of 41 ± 3 Å, common for fluid membranes. The formation of supported lipid bilayers composed of natural extracts of Escherichia coli allow for following biomolecular interactions, thus advancing the field towards bacterial-specific membrane biomimics.
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Affiliation(s)
- Tania Kjellerup Lind
- Nano-Science Center and Department of Chemistry, University of Copenhagen, Copenhagen, Denmark
- European Spallation Source ESS AB, Lund, Sweden
| | - Hanna Wacklin
- Nano-Science Center and Department of Chemistry, University of Copenhagen, Copenhagen, Denmark
- European Spallation Source ESS AB, Lund, Sweden
| | - Jürgen Schiller
- Institute of Medical Physics and Biophysics, Faculty of Medicine, University of Leipzig, Leipzig, Germany
| | - Martine Moulin
- Institut Laue-Langevin, Life Science Group, Grenoble, France
| | | | - Thomas Günther Pomorski
- Centre for Membrane Pumps in Cells and Disease—PUMPKIN, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Marité Cárdenas
- Nano-Science Center and Department of Chemistry, University of Copenhagen, Copenhagen, Denmark
- Malmoe University, Department of Biomedical Sciences, Health & Society, 20500 Malmoe, Sweden
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Pace H, Simonsson Nyström L, Gunnarsson A, Eck E, Monson C, Geschwindner S, Snijder A, Höök F. Preserved transmembrane protein mobility in polymer-supported lipid bilayers derived from cell membranes. Anal Chem 2015; 87:9194-203. [PMID: 26268463 DOI: 10.1021/acs.analchem.5b01449] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Supported lipid bilayers (SLBs) have contributed invaluable information about the physiochemical properties of cell membranes, but their compositional simplicity often limits the level of knowledge that can be gained about the structure and function of transmembrane proteins in their native environment. Herein, we demonstrate a generic protocol for producing polymer-supported lipid bilayers on glass surfaces that contain essentially all naturally occurring cell-membrane components of a cell line while still retaining transmembrane protein mobility and activity. This was achieved by merging vesicles made from synthetic lipids (PEGylated lipids and POPC lipids) with native cell-membrane vesicles to generate hybrid vesicles which readily rupture into a continuous polymer-supported lipid bilayer. To investigate the properties of these complex hybrid SLBs and particularly the behavior of their integral membrane-proteins, we used total internal reflection fluorescence imaging to study a transmembrane protease, β-secretase 1 (BACE1), whose ectoplasmic and cytoplasmic domains could both be specifically targeted with fluorescent reporters. By selectively probing the two different orientations of BACE1 in the resulting hybrid SLBs, the role of the PEG-cushion on transmembrane protein lateral mobility was investigated. The results reveal the necessity of having the PEGylated lipids present during vesicle adsorption to prevent immobilization of transmembrane proteins with protruding domains. The proteolytic activity of BACE1 was unadulterated by the sonication process used to merge the synthetic and native membrane vesicles; importantly it was also conserved in the SLB. The presented strategy could thus serve both fundamental studies of membrane biophysics and the production of surface-based bioanalytical sensor platforms.
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Affiliation(s)
- Hudson Pace
- Department of Applied Physics, Chalmers University of Technology , SE-41296 Gothenburg, Sweden
| | - Lisa Simonsson Nyström
- Department of Applied Physics, Chalmers University of Technology , SE-41296 Gothenburg, Sweden
| | - Anders Gunnarsson
- Discovery Sciences, AstraZeneca R&D Mölndal , SE-43183 Mölndal, Sweden
| | - Elizabeth Eck
- Department of Applied Physics, Chalmers University of Technology , SE-41296 Gothenburg, Sweden
| | - Christopher Monson
- Department of Physical Science, Southern Utah University , Cedar City, Utah 84720 United States
| | | | - Arjan Snijder
- Discovery Sciences, AstraZeneca R&D Mölndal , SE-43183 Mölndal, Sweden
| | - Fredrik Höök
- Department of Applied Physics, Chalmers University of Technology , SE-41296 Gothenburg, Sweden
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Wang L, Roth JS, Han X, Evans SD. Photosynthetic Proteins in Supported Lipid Bilayers: Towards a Biokleptic Approach for Energy Capture. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2015; 11:3306-3318. [PMID: 25727786 DOI: 10.1002/smll.201403469] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2014] [Revised: 01/11/2015] [Indexed: 06/04/2023]
Abstract
In nature, plants and some bacteria have evolved an ability to convert solar energy into chemical energy usable by the organism. This process involves several proteins and the creation of a chemical gradient across the cell membrane. To transfer this process to a laboratory environment, several conditions have to be met: i) proteins need to be reconstituted into a lipid membrane, ii) the proteins need to be correctly oriented and functional and, finally, iii) the lipid membrane should be capable of maintaining chemical and electrical gradients. Investigating the processes of photosynthesis and energy generation in vivo is a difficult task due to the complexity of the membrane and its associated proteins. Solid, supported lipid bilayers provide a good model system for the systematic investigation of the different components involved in the photosynthetic pathway. In this review, the progress made to date in the development of supported lipid bilayer systems suitable for the investigation of membrane proteins is described; in particular, there is a focus on those used for the reconstitution of proteins involved in light capture.
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Affiliation(s)
- Lei Wang
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK
- State Key Laboratory of Urban Water Resource and Environment, School of Chemical Engineering and Technology, Harbin Institute of Technology, Harbin, 150001, China
| | - Johannes S Roth
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK
| | - Xiaojun Han
- State Key Laboratory of Urban Water Resource and Environment, School of Chemical Engineering and Technology, Harbin Institute of Technology, Harbin, 150001, China
| | - Stephen D Evans
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK
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Lind TK, Cárdenas M, Wacklin HP. Formation of Supported Lipid Bilayers by Vesicle Fusion: Effect of Deposition Temperature. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:7259-63. [PMID: 24932971 DOI: 10.1021/la500897x] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Affiliation(s)
- Tania Kjellerup Lind
- Nano-Science
Center and Institute of Chemistry, Copenhagen University, Copenhagen, Denmark
- European Spallation
Source ESS AB, Lund, Sweden
| | - Marité Cárdenas
- Nano-Science
Center and Institute of Chemistry, Copenhagen University, Copenhagen, Denmark
- Malmoe University, Health & Society, 20506 Malmoe, Sweden
| | - Hanna Pauliina Wacklin
- Nano-Science
Center and Institute of Chemistry, Copenhagen University, Copenhagen, Denmark
- European Spallation
Source ESS AB, Lund, Sweden
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20
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Granqvist N, Yliperttula M, Välimäki S, Pulkkinen P, Tenhu H, Viitala T. Control of the morphology of lipid layers by substrate surface chemistry. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:2799-809. [PMID: 24564782 DOI: 10.1021/la4046622] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
In this study, surface coatings were used to control the morphology of the deposited lipid layers during vesicle spreading, i.e., to control if liposomes self-assemble on a surface into a supported lipid bilayer or a supported vesicular layer. The influence of the properties of the surface coating on formation of the deposited lipid layer was studied with quartz crystal microbalance and two-wavelength multiparametric surface plasmon resonance techniques. Control of lipid self-assembly on the surface was achieved by two different types of soft substrate materials, i.e., dextran and thiolated polyethylene glycol, functionalized with hydrophobic linkers for capturing the lipid layer. The low-molecular-weight dextran-based surface promoted formation of supported lipid bilayers, while the thiolated polyethylene glycol-based surface promoted supported vesicular layer formation. A silicon dioxide surface was used as a reference surface in both measurement techniques. In addition to promoting supported lipid bilayer formation of known lipid mixtures, the dextran surface also promoted supported lipid bilayer formation of vesicles containing the cell membrane extract of human hepatoblastoma cells. The new dextran-based surface was also capable of protecting the supported lipid bilayer against dehydration when exposed to a constant flow of air. The well-established quartz crystal microbalance technique was effective in determining the morphology of the formed lipid layer, while the two-wavelength surface plasmon resonance analysis enabled further complementary characterization of the adsorbed supported lipid bilayers and supported vesicular layers.
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Affiliation(s)
- Niko Granqvist
- Faculty of Pharmacy, Division of Biopharmaceutics and Pharmacokinetics, University of Helsinki, P.O. Box 56, 00014, Helsinki, Finland, and ‡Faculty of Chemistry, Laboratory of Polymer Chemistry, University of Helsinki , P.O. Box 55, 00014 Helsinki, Finland
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21
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Vilardi F, Stephan M, Clancy A, Janshoff A, Schwappach B. WRB and CAML are necessary and sufficient to mediate tail-anchored protein targeting to the ER membrane. PLoS One 2014; 9:e85033. [PMID: 24392163 PMCID: PMC3879356 DOI: 10.1371/journal.pone.0085033] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2013] [Accepted: 11/21/2013] [Indexed: 02/01/2023] Open
Abstract
Tail-Anchored (TA) proteins are inserted into the endoplasmic reticulum (ER) membrane of yeast cells via the posttranslational Guided Entry of Tail-Anchored protein (GET) pathway. The key component of this targeting machinery is the ATPase Get3 that docks to the ER membrane by interacting with a receptor complex formed by the proteins Get1 and Get2. A conserved pathway is present in higher eukaryotes and is mediated by TRC40, homolog of Get3, and the recently identified membrane receptors WRB and CAML. Here, we used yeast lacking the GET1 and GET2 genes and substituted them with WRB and CAML. This rescued the growth phenotypes of the GET receptor mutant. We demonstrate that WRB and CAML efficiently recruit Get3 to the ER membrane and promote the targeting of the TA proteins in vivo. Our results show that the membrane spanning segments of CAML are essential to create a functional receptor with WRB and to ensure TA protein membrane insertion. Finally, we determined the binding parameters of TRC40 to the WRB/CAML receptor. We conclude that together, WRB and CAML are not only necessary but also sufficient to create a functional membrane receptor complex for TRC40. The yeast complementation assay can be used to further dissect the structure-function relationship of the WRB/CAML heteromultimer in the absence of endogenous receptor proteins.
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Affiliation(s)
- Fabio Vilardi
- Institute of Molecular Biology, University of Göttingen, Göttingen, Germany
| | - Milena Stephan
- Institute of Physical Chemistry, University of Göttingen, Göttingen, Germany
| | - Anne Clancy
- Institute of Molecular Biology, University of Göttingen, Göttingen, Germany
| | - Andreas Janshoff
- Institute of Physical Chemistry, University of Göttingen, Göttingen, Germany
| | - Blanche Schwappach
- Institute of Molecular Biology, University of Göttingen, Göttingen, Germany
- * E-mail:
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22
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Schrems A, Phillips J, Casey D, Wylie D, Novakova M, Sleytr UB, Klug D, Neil MAA, Schuster B, Ces O. The grab-and-drop protocol: a novel strategy for membrane protein isolation and reconstitution from single cells. Analyst 2014; 139:3296-304. [DOI: 10.1039/c4an00059e] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Samples of cell membrane were non-destructively removed from individual, live cells using optically trapped beads, and deposited into a supported lipid bilayer mounted on an S-layer protein-coated substrate.
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Affiliation(s)
- Angelika Schrems
- Department of Nanobiotechnology
- University of Natural Resources and Life Sciences
- Vienna, 1190 Austria
| | - John Phillips
- The Proxomics Group
- Institute of Chemical Biology
- Imperial College London
- London, SW7 2AZ UK
| | - Duncan Casey
- The Proxomics Group
- Institute of Chemical Biology
- Imperial College London
- London, SW7 2AZ UK
| | - Douglas Wylie
- The Proxomics Group
- Institute of Chemical Biology
- Imperial College London
- London, SW7 2AZ UK
| | - Mira Novakova
- The Proxomics Group
- Institute of Chemical Biology
- Imperial College London
- London, SW7 2AZ UK
| | - Uwe B. Sleytr
- Department of Nanobiotechnology
- University of Natural Resources and Life Sciences
- Vienna, 1190 Austria
| | - David Klug
- The Proxomics Group
- Institute of Chemical Biology
- Imperial College London
- London, SW7 2AZ UK
| | - Mark A. A. Neil
- The Proxomics Group
- Institute of Chemical Biology
- Imperial College London
- London, SW7 2AZ UK
| | - Bernhard Schuster
- Department of Nanobiotechnology
- University of Natural Resources and Life Sciences
- Vienna, 1190 Austria
| | - Oscar Ces
- The Proxomics Group
- Institute of Chemical Biology
- Imperial College London
- London, SW7 2AZ UK
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Costello DA, Hsia CY, Millet JK, Porri T, Daniel S. Membrane fusion-competent virus-like proteoliposomes and proteinaceous supported bilayers made directly from cell plasma membranes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2013; 29:6409-6419. [PMID: 23631561 DOI: 10.1021/la400861u] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Virus-like particles are useful materials for studying virus-host interactions in a safe manner. However, the standard production of pseudovirus based on the vesicular stomatitis virus (VSV) backbone is an intricate procedure that requires trained laboratory personnel. In this work, a new strategy for creating virus-like proteoliposomes (VLPLs) and virus-like supported bilayers (VLSBs) is presented. This strategy uses a cell blebbing technique to induce the formation of nanoscale vesicles from the plasma membrane of BHK cells expressing the hemagglutinin (HA) fusion protein of influenza X-31. These vesicles and supported bilayers contain HA and are used to carry out single particle membrane fusion events, monitored using total internal reflection fluorescence microscopy. The results of these studies show that the VLPLs and VLSBs contain HA proteins that are fully competent to carry out membrane fusion, including the formation of a fusion pore and the release of fluorophores loaded into vesicles. This new strategy for creating spherical and planar geometry virus-like membranes has many potential applications. VLPLs could be used to study fusion proteins of virulent viruses in a safe manner, or they could be used as therapeutic delivery particles to transport beneficial proteins coexpressed in the cells to a target cell. VLSBs could facilitate high throughput screening of antiviral drugs or pathogen-host cell interactions.
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Affiliation(s)
- Deirdre A Costello
- School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York, USA
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24
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Catucci G, Gilardi G, Jeuken L, Sadeghi SJ. In vitro drug metabolism by C-terminally truncated human flavin-containing monooxygenase 3. Biochem Pharmacol 2012; 83:551-8. [DOI: 10.1016/j.bcp.2011.11.029] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2011] [Revised: 11/28/2011] [Accepted: 11/30/2011] [Indexed: 10/14/2022]
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25
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Chao L, Daniel S. Measuring the Partitioning Kinetics of Membrane Biomolecules Using Patterned Two-Phase Coexistant Lipid Bilayers. J Am Chem Soc 2011; 133:15635-43. [DOI: 10.1021/ja205274g] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Ling Chao
- Department of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Susan Daniel
- Department of Chemical and Biomolecular Engineering, Cornell University, Ithaca, New York 14853, United States
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26
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Simonsson L, Gunnarsson A, Wallin P, Jönsson P, Höök F. Continuous Lipid Bilayers Derived from Cell Membranes for Spatial Molecular Manipulation. J Am Chem Soc 2011; 133:14027-32. [DOI: 10.1021/ja204589a] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Lisa Simonsson
- Department of Applied Physics, Chalmers University of Technology, SE 41296 Gothenburg, Sweden
| | - Anders Gunnarsson
- Department of Applied Physics, Chalmers University of Technology, SE 41296 Gothenburg, Sweden
| | - Patric Wallin
- Department of Applied Physics, Chalmers University of Technology, SE 41296 Gothenburg, Sweden
| | - Peter Jönsson
- Department of Applied Physics, Chalmers University of Technology, SE 41296 Gothenburg, Sweden
| | - Fredrik Höök
- Department of Applied Physics, Chalmers University of Technology, SE 41296 Gothenburg, Sweden
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27
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Cheetham MR, Bramble JP, McMillan DGG, Krzeminski L, Han X, Johnson BRG, Bushby RJ, Olmsted PD, Jeuken LJC, Marritt SJ, Butt JN, Evans SD. Concentrating Membrane Proteins Using Asymmetric Traps and AC Electric Fields. J Am Chem Soc 2011; 133:6521-4. [DOI: 10.1021/ja2007615] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Matthew R. Cheetham
- School of Physics & Astronomy, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
| | - Jonathan P. Bramble
- School of Physics & Astronomy, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
| | - Duncan G. G. McMillan
- School of Physics & Astronomy, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
- Institute of Membrane and Systems Biology, University of Leeds, Leeds LS2 9JT, U.K
- Centre for Molecular Nanoscience, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
| | - Lukasz Krzeminski
- School of Physics & Astronomy, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
- Centre for Molecular Nanoscience, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
| | - Xiaojun Han
- School of Physics & Astronomy, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
| | | | - Richard J. Bushby
- Centre for Molecular Nanoscience, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
| | - Peter D. Olmsted
- School of Physics & Astronomy, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
| | - Lars J. C. Jeuken
- School of Physics & Astronomy, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
- Institute of Membrane and Systems Biology, University of Leeds, Leeds LS2 9JT, U.K
- Centre for Molecular Nanoscience, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
| | - Sophie J. Marritt
- School of Chemistry, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U.K
| | - Julea N. Butt
- School of Chemistry, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U.K
| | - Stephen D. Evans
- School of Physics & Astronomy, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, U.K
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28
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Schultz ZD, Levin IW. Vibrational spectroscopy of biomembranes. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2011; 4:343-66. [PMID: 21456972 DOI: 10.1146/annurev-anchem-061010-114048] [Citation(s) in RCA: 74] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Vibrational spectroscopy, commonly associated with IR absorption and Raman scattering, has provided a powerful approach for investigating interactions between biomolecules that make up cellular membranes. Because the IR and Raman signals arise from the intrinsic properties of these molecules, vibrational spectroscopy probes the delicate interactions that regulate biomembranes with minimal perturbation. Numerous innovative measurements, including nonlinear optical processes and confined bilayer assemblies, have provided new insights into membrane behavior. In this review, we highlight the use of vibrational spectroscopy to study lipid-lipid interactions. We also examine recent work in which vibrational measurements have been used to investigate the incorporation of peptides and proteins into lipid bilayers, and we discuss the interactions of small molecules and drugs with membrane structures. Emerging techniques and measurements on intact cellular membranes provide a prospective on the future of vibrational spectroscopic studies of biomembranes.
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Affiliation(s)
- Zachary D Schultz
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, USA.
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29
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Chemburu S, Fenton K, Lopez GP, Zeineldin R. Biomimetic silica microspheres in biosensing. Molecules 2010; 15:1932-57. [PMID: 20336023 PMCID: PMC6257317 DOI: 10.3390/molecules15031932] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2010] [Revised: 03/16/2010] [Accepted: 03/17/2010] [Indexed: 11/16/2022] Open
Abstract
Lipid vesicles spontaneously fuse and assemble into a lipid bilayer on planar or spherical silica surfaces and other substrates. The supported lipid bilayers (SLBs) maintain characteristics of biological membranes, and are thus considered to be biomembrane mimetic systems that are stable because of the underlying substrate. Examples of their shared characteristics with biomembranes include lateral fluidity, barrier formation to ions and molecules, and their ability to incorporate membrane proteins into them. Biomimetic silica microspheres consisting of SLBs on solid or porous silica microspheres have been utilized for different biosensing applications. The advantages of such biomimetic microspheres for biosensing include their increased surface area to volume ratio which improves the detection limits of analytes, and their amenability for miniaturization, multiplexing and high throughput screening. This review presents examples and formats of using such biomimetic solid or porous silica microspheres in biosensing.
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Affiliation(s)
- Sireesha Chemburu
- Center for Biomedical Engineering, University of New Mexico, Albuquerque, NM 87131, USA
| | - Kyle Fenton
- Center for Biomedical Engineering, University of New Mexico, Albuquerque, NM 87131, USA
| | - Gabriel P. Lopez
- Center for Biomedical Engineering, University of New Mexico, Albuquerque, NM 87131, USA
- Department of Biomedical Engineering, Duke University, Durham, NC 27708, USA
- Department of Mechanical Engineering & Materials Science, Duke University, Durham, NC 27708, USA
| | - Reema Zeineldin
- Department of Pharmaceutical Sciences, Massachusetts College of Pharmacy and Health Sciences, 19 Foster Street, Worcester, MA 01608, USA
- Author to whom correspondence should be addressed; E-Mail: ; Tel.: +1-508-373-5762; Fax: +1- 508-890-5618
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Abstract
Quinone oxidoreductases are a class of membrane enzymes that catalyse the oxidation or reduction of membrane-bound quinols/quinones. The conversion of quinone/quinol by these enzymes is difficult to study because of the hydrophobic nature of the enzymes and their substrates. We describe some biochemical properties of quinones and quinone oxidoreductases and then look in more detail at two model membranes that can be used to study quinone oxidoreductases in a native-like membrane environment with their native lipophilic quinone substrates. The results obtained with these model membranes are compared with classical enzyme assays that use water-soluble quinone analogues.
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Affiliation(s)
- Sophie A. Weiss
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK
| | - Lars J. C. Jeuken
- Centre for Self Organising Molecular Systems, University of Leeds, Leeds, LS2 9JT, UK
- Institute of Membrane and Systems Biology, University of Leeds, Leeds, LS2 9JT, UK
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31
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Characterization of cytochrome bo3 activity in a native-like surface-tethered membrane. Biochem J 2009; 417:555-60. [PMID: 18821852 DOI: 10.1042/bj20081345] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
We have developed a simple native-like surface-tethered membrane system to investigate the activity of cbo(3) (cytochrome bo(3)), a terminal oxidase in Escherichia coli. The tethered membranes consist of E. coli inner-membrane extracts mixed with additional E. coli lipids containing various amounts of the cbo(3) substrate UQ-10 (ubiquinol-10). Tethered membranes are formed by self-assembly from vesicles on to gold electrodes functionalized with cholesterol derivatives. cbo(3) activity was monitored using CV (cyclic voltammetry) with electron transfer to cbo(3) mediated by UQ-10. The apparent K(m) for oxygen with this system is 1.1+/-0.4 microM, in good agreement with values reported in the literature for whole-cell experiments and for purified cbo(3). Increasing the concentration of lipophilic UQ-10 in the membrane leads to an increase in cbo(3) activity. The activity of cbo(3) with long-chain ubiquinones appears to be different from previous reports using short-chain substrate analogues such as UQ-1 in that typical Michaelis-Menten kinetics are not observed using UQ-10. This native-like membrane model thus provides new insights into the interaction of transmembrane enzymes with hydrophobic substrates which contrasts with studies using hydrophilic UQ analogues.
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Vinatier V, Blakey CB, Braddick D, Johnson BRG, Evans SD, Bugg TDH. In vitro biosynthesis of bacterial peptidoglycan using d-Cys-containing precursors: fluorescent detection of transglycosylation and transpeptidation. Chem Commun (Camb) 2009:4037-9. [DOI: 10.1039/b819869a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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33
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