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Fatima N, Khan U, Han X, Zannin E, Rigotti C, Cattaneo F, Dognini G, Ventura ML, Demi L. Deep learning approaches for automated classification of neonatal lung ultrasound with assessment of human-to-AI interrater agreement. Comput Biol Med 2024; 183:109315. [PMID: 39504781 DOI: 10.1016/j.compbiomed.2024.109315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 10/03/2024] [Accepted: 10/21/2024] [Indexed: 11/08/2024]
Abstract
Neonatal respiratory disorders pose significant challenges in clinical settings, often requiring rapid and accurate diagnostic solutions for effective management. Lung ultrasound (LUS) has emerged as a promising tool to evaluate respiratory conditions in neonates. This evaluation is mainly based on the interpretation of visual patterns (horizontal artifacts, vertical artifacts, and consolidations). Automated interpretation of these patterns can assist clinicians in their evaluations. However, developing AI-based solutions for this purpose is challenging, primarily due to the lack of annotated data and inherent subjectivity in expert interpretations. This study aims to propose an automated solution for the reliable interpretation of patterns in LUS videos of newborns. We employed two distinct strategies. The first strategy is a frame-to-video-level approach that computes frame-level predictions from deep learning (DL) models trained from scratch (F2V-TS) along with fine-tuning pre-trained models (F2V-FT) followed by aggregation of those predictions for video-level evaluation. The second strategy is a direct video classification approach (DV) for evaluating LUS data. To evaluate our methods, we used LUS data from 34 neonatal patients comprising of 70 exams with annotations provided by three expert human operators (3HOs). Results show that within the frame-to-video-level approach, F2V-FT achieved the best performance with an accuracy of 77% showing moderate agreement with the 3HOs. while the direct video classification approach resulted in an accuracy of 72%, showing substantial agreement with the 3HOs, our proposed study lays down the foundation for reliable AI-based solutions for newborn LUS data evaluation.
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Affiliation(s)
- Noreen Fatima
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Umair Khan
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Xi Han
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | | | | | | | | | | | - Libertario Demi
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy.
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2
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Mento F, Perpenti M, Barcellona G, Perrone T, Demi L. Lung Ultrasound Spectroscopy Applied to the Differential Diagnosis of Pulmonary Diseases: An In Vivo Multicenter Clinical Study. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2024; 71:1217-1232. [PMID: 39236134 DOI: 10.1109/tuffc.2024.3454956] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/07/2024]
Abstract
Lung ultrasound (LUS) is an important imaging modality to assess the state of the lung surface. However, current LUS approaches are based on subjective interpretation of imaging artifacts, which results in poor specificity as quantitative evaluation lacks. The latter could be improved by adopting LUS spectroscopy of vertical artifacts. Indeed, parameterizing these artifacts with native frequency, bandwidth, and total intensity ( [Formula: see text]) already showed potentials in differentiating pulmonary fibrosis (PF). In this study, we acquired radio frequency (RF) data from 114 patients. These data (representing the largest LUS RF dataset worldwide) were acquired by utilizing a multifrequency approach, implemented with an ULtrasound Advanced Open Platform (ULA-OP). Convex (CA631) and linear (LA533) probes (Esaote, Florence, Italy) were utilized to acquire RF data at three (2, 3, and 4 MHz), and four (3, 4, 5, and 6 MHz) imaging frequencies. A multifrequency analysis was conducted on vertical artifacts detected in patients having cardiogenic pulmonary edema (CPE), pneumonia, or PF. These artifacts were characterized by the three abovementioned parameters, and their mean values were used to project each patient into a feature space having up to three dimensions. Binary classifiers were used to evaluate the performance of these three mean features in differentiating patients affected by CPE, pneumonia, and PF. Acquisitions of multifrequency data performed with linear probe lead to accuracies up to 85.43% in the differential diagnosis of these diseases (convex probes' maximum accuracy was 74.51%). Moreover, the results showed high potentials of mean [Formula: see text] (by itself or combined with other features) in improving LUS specificity.
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3
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Khan U, Thompson R, Li J, Etter LP, Camelo I, Pieciak RC, Castro-Aragon I, Setty B, Gill CC, Demi L, Betke M. FLUEnT: Transformer for detecting lung consolidations in videos using fused lung ultrasound encodings. Comput Biol Med 2024; 180:109014. [PMID: 39163826 DOI: 10.1016/j.compbiomed.2024.109014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 08/06/2024] [Accepted: 08/09/2024] [Indexed: 08/22/2024]
Abstract
Pneumonia is the leading cause of death among children around the world. According to WHO, a total of 740,180 lives under the age of five were lost due to pneumonia in 2019. Lung ultrasound (LUS) has been shown to be particularly useful for supporting the diagnosis of pneumonia in children and reducing mortality in resource-limited settings. The wide application of point-of-care ultrasound at the bedside is limited mainly due to a lack of training for data acquisition and interpretation. Artificial Intelligence can serve as a potential tool to automate and improve the LUS data interpretation process, which mainly involves analysis of hyper-echoic horizontal and vertical artifacts, and hypo-echoic small to large consolidations. This paper presents, Fused Lung Ultrasound Encoding-based Transformer (FLUEnT), a novel pediatric LUS video scoring framework for detecting lung consolidations using fused LUS encodings. Frame-level embeddings from a variational autoencoder, features from a spatially attentive ResNet-18, and encoded patient information as metadata combiningly form the fused encodings. These encodings are then passed on to the transformer for binary classification of the presence or absence of consolidations in the video. The video-level analysis using fused encodings resulted in a mean balanced accuracy of 89.3 %, giving an average improvement of 4.7 % points in comparison to when using these encodings individually. In conclusion, outperforming the state-of-the-art models by an average margin of 8 % points, our proposed FLUEnT framework serves as a benchmark for detecting lung consolidations in LUS videos from pediatric pneumonia patients.
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Affiliation(s)
- Umair Khan
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | | | - Jason Li
- Department of Computer Science, Boston University, Boston, MA, USA
| | | | - Ingrid Camelo
- Augusta University, Pediatric Infectious Disease, Augusta, GA, USA
| | - Rachel C Pieciak
- Department of Global Health, Boston University School of Public Health, Boston, MA, USA
| | | | - Bindu Setty
- Department of Radiology, Boston Medical Center, Boston, MA, USA
| | - Christopher C Gill
- Department of Global Health, Boston University School of Public Health, Boston, MA, USA
| | - Libertario Demi
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy.
| | - Margrit Betke
- Department of Computer Science, Boston University, Boston, MA, USA
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4
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Li Z, Yang X, Lan H, Wang M, Huang L, Wei X, Xie G, Wang R, Yu J, He Q, Zhang Y, Luo J. Knowledge fused latent representation from lung ultrasound examination for COVID-19 pneumonia severity assessment. ULTRASONICS 2024; 143:107409. [PMID: 39053242 DOI: 10.1016/j.ultras.2024.107409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 06/19/2024] [Accepted: 07/17/2024] [Indexed: 07/27/2024]
Abstract
COVID-19 pneumonia severity assessment is of great clinical importance, and lung ultrasound (LUS) plays a crucial role in aiding the severity assessment of COVID-19 pneumonia due to its safety and portability. However, its reliance on qualitative and subjective observations by clinicians is a limitation. Moreover, LUS images often exhibit significant heterogeneity, emphasizing the need for more quantitative assessment methods. In this paper, we propose a knowledge fused latent representation framework tailored for COVID-19 pneumonia severity assessment using LUS examinations. The framework transforms the LUS examination into latent representation and extracts knowledge from regions labeled by clinicians to improve accuracy. To fuse the knowledge into the latent representation, we employ a knowledge fusion with latent representation (KFLR) model. This model significantly reduces errors compared to approaches that lack prior knowledge integration. Experimental results demonstrate the effectiveness of our method, achieving high accuracy of 96.4 % and 87.4 % for binary-level and four-level COVID-19 pneumonia severity assessments, respectively. It is worth noting that only a limited number of studies have reported accuracy for clinically valuable exam level assessments, and our method surpass existing methods in this context. These findings highlight the potential of the proposed framework for monitoring disease progression and patient stratification in COVID-19 pneumonia cases.
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Affiliation(s)
- Zhiqiang Li
- School of Biomedical Engineering, Tsinghua University, Beijing 100084, China
| | - Xueping Yang
- Department of Ultrasound, Beijing Ditan Hospital, Capital Medical University, Beijing 100015, China
| | - Hengrong Lan
- School of Biomedical Engineering, Tsinghua University, Beijing 100084, China
| | - Mixue Wang
- Department of Ultrasound, Beijing Ditan Hospital, Capital Medical University, Beijing 100015, China
| | - Lijie Huang
- School of Biomedical Engineering, Tsinghua University, Beijing 100084, China
| | - Xingyue Wei
- School of Biomedical Engineering, Tsinghua University, Beijing 100084, China
| | - Gangqiao Xie
- School of Biomedical Engineering, Tsinghua University, Beijing 100084, China
| | - Rui Wang
- School of Biomedical Engineering, Tsinghua University, Beijing 100084, China
| | - Jing Yu
- Department of Ultrasound, Beijing Ditan Hospital, Capital Medical University, Beijing 100015, China
| | - Qiong He
- School of Biomedical Engineering, Tsinghua University, Beijing 100084, China
| | - Yao Zhang
- Department of Ultrasound, Beijing Ditan Hospital, Capital Medical University, Beijing 100015, China.
| | - Jianwen Luo
- School of Biomedical Engineering, Tsinghua University, Beijing 100084, China.
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5
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Khan U, Afrakhteh S, Mento F, Mert G, Smargiassi A, Inchingolo R, Tursi F, Macioce VN, Perrone T, Iacca G, Demi L. Low-complexity lung ultrasound video scoring by means of intensity projection-based video compression. Comput Biol Med 2024; 169:107885. [PMID: 38141447 DOI: 10.1016/j.compbiomed.2023.107885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 11/27/2023] [Accepted: 12/18/2023] [Indexed: 12/25/2023]
Abstract
Since the outbreak of COVID-19, efforts have been made towards semi-quantitative analysis of lung ultrasound (LUS) data to assess the patient's condition. Several methods have been proposed in this regard, with a focus on frame-level analysis, which was then used to assess the condition at the video and prognostic levels. However, no extensive work has been done to analyze lung conditions directly at the video level. This study proposes a novel method for video-level scoring based on compression of LUS video data into a single image and automatic classification to assess patient's condition. The method utilizes maximum, mean, and minimum intensity projection-based compression of LUS video data over time. This enables to preserve hyper- and hypo-echoic data regions, while compressing the video down to a maximum of three images. The resulting images are then classified using a convolutional neural network (CNN). Finally, the worst predicted score given among the images is assigned to the corresponding video. The results show that this compression technique can achieve a promising agreement at the prognostic level (81.62%), while the video-level agreement remains comparable with the state-of-the-art (46.19%). Conclusively, the suggested method lays down the foundation for LUS video compression, shifting from frame-level to direct video-level analysis of LUS data.
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Affiliation(s)
- Umair Khan
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Sajjad Afrakhteh
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Federico Mento
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Gizem Mert
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Andrea Smargiassi
- Pulmonary Medicine Unit, Department of Medical and Surgical Sciences, Fondazione Policlinico Universitario Agostino Gemelli IRCCS, Rome, Italy
| | - Riccardo Inchingolo
- Pulmonary Medicine Unit, Department of Medical and Surgical Sciences, Fondazione Policlinico Universitario Agostino Gemelli IRCCS, Rome, Italy
| | | | | | - Tiziano Perrone
- Dipartimento di Emergenza ed Urgenza, Humanitas Gavazzeni Bergamo, Bergamo, Italy
| | - Giovanni Iacca
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Libertario Demi
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy.
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Sultan LR, Haertter A, Al-Hasani M, Demiris G, Cary TW, Tung-Chen Y, Sehgal CM. Can Artificial Intelligence Aid Diagnosis by Teleguided Point-of-Care Ultrasound? A Pilot Study for Evaluating a Novel Computer Algorithm for COVID-19 Diagnosis Using Lung Ultrasound. AI 2023; 4:875-887. [PMID: 37929255 PMCID: PMC10623579 DOI: 10.3390/ai4040044] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2023] Open
Abstract
With the 2019 coronavirus disease (COVID-19) pandemic, there is an increasing demand for remote monitoring technologies to reduce patient and provider exposure. One field that has an increasing potential is teleguided ultrasound, where telemedicine and point-of-care ultrasound (POCUS) merge to create this new scope. Teleguided POCUS can minimize staff exposure while preserving patient safety and oversight during bedside procedures. In this paper, we propose the use of teleguided POCUS supported by AI technologies for the remote monitoring of COVID-19 patients by non-experienced personnel including self-monitoring by the patients themselves. Our hypothesis is that AI technologies can facilitate the remote monitoring of COVID-19 patients through the utilization of POCUS devices, even when operated by individuals without formal medical training. In pursuit of this goal, we performed a pilot analysis to evaluate the performance of users with different clinical backgrounds using a computer-based system for COVID-19 detection using lung ultrasound. The purpose of the analysis was to emphasize the potential of the proposed AI technology for improving diagnostic performance, especially for users with less experience.
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Affiliation(s)
- Laith R. Sultan
- Department of Radiology, Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA
| | - Allison Haertter
- Radiation Oncology Department, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Maryam Al-Hasani
- Ultrasound Research Lab, Department of Radiology, University of Pennsylvania, Philadelphia, PA 19103, USA
| | - George Demiris
- Informatics Division of the Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Theodore W. Cary
- Ultrasound Research Lab, Department of Radiology, University of Pennsylvania, Philadelphia, PA 19103, USA
| | - Yale Tung-Chen
- Emergency Medicine Department, La Madrida Hospital, 28006 Madrid, Spain
| | - Chandra M. Sehgal
- Ultrasound Research Lab, Department of Radiology, University of Pennsylvania, Philadelphia, PA 19103, USA
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7
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Vukovic D, Wang A, Antico M, Steffens M, Ruvinov I, van Sloun RJ, Canty D, Royse A, Royse C, Haji K, Dowling J, Chetty G, Fontanarosa D. Automatic deep learning-based pleural effusion segmentation in lung ultrasound images. BMC Med Inform Decis Mak 2023; 23:274. [PMID: 38031040 PMCID: PMC10685575 DOI: 10.1186/s12911-023-02362-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 11/03/2023] [Indexed: 12/01/2023] Open
Abstract
BACKGROUND Point-of-care lung ultrasound (LUS) allows real-time patient scanning to help diagnose pleural effusion (PE) and plan further investigation and treatment. LUS typically requires training and experience from the clinician to accurately interpret the images. To address this limitation, we previously demonstrated a deep-learning model capable of detecting the presence of PE on LUS at an accuracy greater than 90%, when compared to an experienced LUS operator. METHODS This follow-up study aimed to develop a deep-learning model to provide segmentations for PE in LUS. Three thousand and forty-one LUS images from twenty-four patients diagnosed with PE were selected for this study. Two LUS experts provided the ground truth for training by reviewing and segmenting the images. The algorithm was then trained using ten-fold cross-validation. Once training was completed, the algorithm segmented a separate subset of patients. RESULTS Comparing the segmentations, we demonstrated an average Dice Similarity Coefficient (DSC) of 0.70 between the algorithm and experts. In contrast, an average DSC of 0.61 was observed between the experts. CONCLUSION In summary, we showed that the trained algorithm achieved a comparable average DSC at PE segmentation. This represents a promising step toward developing a computational tool for accurately augmenting PE diagnosis and treatment.
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Affiliation(s)
- Damjan Vukovic
- School of Clinical Sciences, Queensland University of Technology, Gardens Point Campus, 2 George St, Brisbane, QLD 4000, Australia.
- Centre for Biomedical Technologies (CBT), Queensland University of Technology, Brisbane, QLD 4000, Australia.
| | - Andrew Wang
- Department of Surgery (Royal Melbourne Hospital), University of Melbourne, Royal Parade, Parkville, VIC 3050, Australia
| | - Maria Antico
- School of Clinical Sciences, Queensland University of Technology, Gardens Point Campus, 2 George St, Brisbane, QLD 4000, Australia
- CSIRO Health and Biosecurity, The Australian eHealth Research Centre, Herston, QLD 4029, Australia
| | - Marian Steffens
- School of Clinical Sciences, Queensland University of Technology, Gardens Point Campus, 2 George St, Brisbane, QLD 4000, Australia
| | - Igor Ruvinov
- School of Clinical Sciences, Queensland University of Technology, Gardens Point Campus, 2 George St, Brisbane, QLD 4000, Australia
| | - Ruud Jg van Sloun
- Department of Electrical Engineering, Eindhoven University of Technology, 5600 MB, Eindhoven, The Netherlands
| | - David Canty
- Department of Surgery (Royal Melbourne Hospital), University of Melbourne, Royal Parade, Parkville, VIC 3050, Australia
- Department of Medicine and Nursing, Monash University, Wellington Road, Clayton, 3800, Victoria, Australia
| | - Alistair Royse
- Department of Surgery (Royal Melbourne Hospital), University of Melbourne, Royal Parade, Parkville, VIC 3050, Australia
| | - Colin Royse
- Department of Surgery (Royal Melbourne Hospital), University of Melbourne, Royal Parade, Parkville, VIC 3050, Australia
- Outcomes Research Consortium, Cleveland Clinic, Cleveland, Ohio, USA
| | - Kavi Haji
- Department of Surgery (Royal Melbourne Hospital), University of Melbourne, Royal Parade, Parkville, VIC 3050, Australia
| | - Jason Dowling
- CSIRO Health and Biosecurity, The Australian eHealth Research Centre, Herston, QLD 4029, Australia
| | - Girija Chetty
- School of IT & Systems, Faculty of Science and Technology, University of Canberra, 11 Kirinari Street, Bruce, ACT 2617, Australia
| | - Davide Fontanarosa
- School of Clinical Sciences, Queensland University of Technology, Gardens Point Campus, 2 George St, Brisbane, QLD 4000, Australia.
- Centre for Biomedical Technologies (CBT), Queensland University of Technology, Brisbane, QLD 4000, Australia.
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Lucassen RT, Jafari MH, Duggan NM, Jowkar N, Mehrtash A, Fischetti C, Bernier D, Prentice K, Duhaime EP, Jin M, Abolmaesumi P, Heslinga FG, Veta M, Duran-Mendicuti MA, Frisken S, Shyn PB, Golby AJ, Boyer E, Wells WM, Goldsmith AJ, Kapur T. Deep Learning for Detection and Localization of B-Lines in Lung Ultrasound. IEEE J Biomed Health Inform 2023; 27:4352-4361. [PMID: 37276107 PMCID: PMC10540221 DOI: 10.1109/jbhi.2023.3282596] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Lung ultrasound (LUS) is an important imaging modality used by emergency physicians to assess pulmonary congestion at the patient bedside. B-line artifacts in LUS videos are key findings associated with pulmonary congestion. Not only can the interpretation of LUS be challenging for novice operators, but visual quantification of B-lines remains subject to observer variability. In this work, we investigate the strengths and weaknesses of multiple deep learning approaches for automated B-line detection and localization in LUS videos. We curate and publish, BEDLUS, a new ultrasound dataset comprising 1,419 videos from 113 patients with a total of 15,755 expert-annotated B-lines. Based on this dataset, we present a benchmark of established deep learning methods applied to the task of B-line detection. To pave the way for interpretable quantification of B-lines, we propose a novel "single-point" approach to B-line localization using only the point of origin. Our results show that (a) the area under the receiver operating characteristic curve ranges from 0.864 to 0.955 for the benchmarked detection methods, (b) within this range, the best performance is achieved by models that leverage multiple successive frames as input, and (c) the proposed single-point approach for B-line localization reaches an F 1-score of 0.65, performing on par with the inter-observer agreement. The dataset and developed methods can facilitate further biomedical research on automated interpretation of lung ultrasound with the potential to expand the clinical utility.
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Sagreiya H, Jacobs MA, Akhbardeh A. Automated Lung Ultrasound Pulmonary Disease Quantification Using an Unsupervised Machine Learning Technique for COVID-19. Diagnostics (Basel) 2023; 13:2692. [PMID: 37627951 PMCID: PMC10453777 DOI: 10.3390/diagnostics13162692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 07/30/2023] [Accepted: 08/11/2023] [Indexed: 08/27/2023] Open
Abstract
COVID-19 is an ongoing global health pandemic. Although COVID-19 can be diagnosed with various tests such as PCR, these tests do not establish pulmonary disease burden. Whereas point-of-care lung ultrasound (POCUS) can directly assess the severity of characteristic pulmonary findings of COVID-19, the advantage of using US is that it is inexpensive, portable, and widely available for use in many clinical settings. For automated assessment of pulmonary findings, we have developed an unsupervised learning technique termed the calculated lung ultrasound (CLU) index. The CLU can quantify various types of lung findings, such as A or B lines, consolidations, and pleural effusions, and it uses these findings to calculate a CLU index score, which is a quantitative measure of pulmonary disease burden. This is accomplished using an unsupervised, patient-specific approach that does not require training on a large dataset. The CLU was tested on 52 lung ultrasound examinations from several institutions. CLU demonstrated excellent concordance with radiologist findings in different pulmonary disease states. Given the global nature of COVID-19, the CLU would be useful for sonographers and physicians in resource-strapped areas with limited ultrasound training and diagnostic capacities for more accurate assessment of pulmonary status.
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Affiliation(s)
- Hersh Sagreiya
- Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Michael A. Jacobs
- The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
- Department of Diagnostic and Interventional Imaging, The University of Texas Health Science Center, Houston, TX 77030, USA
| | - Alireza Akhbardeh
- Department of Diagnostic and Interventional Imaging, The University of Texas Health Science Center, Houston, TX 77030, USA
- Ambient Digital LLC, Daly City, CA 94014, USA
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10
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Nhat PTH, Van Hao N, Tho PV, Kerdegari H, Pisani L, Thu LNM, Phuong LT, Duong HTH, Thuy DB, McBride A, Xochicale M, Schultz MJ, Razavi R, King AP, Thwaites L, Van Vinh Chau N, Yacoub S, Gomez A. Clinical benefit of AI-assisted lung ultrasound in a resource-limited intensive care unit. Crit Care 2023; 27:257. [PMID: 37393330 PMCID: PMC10314555 DOI: 10.1186/s13054-023-04548-w] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Accepted: 06/24/2023] [Indexed: 07/03/2023] Open
Abstract
BACKGROUND Interpreting point-of-care lung ultrasound (LUS) images from intensive care unit (ICU) patients can be challenging, especially in low- and middle- income countries (LMICs) where there is limited training available. Despite recent advances in the use of Artificial Intelligence (AI) to automate many ultrasound imaging analysis tasks, no AI-enabled LUS solutions have been proven to be clinically useful in ICUs, and specifically in LMICs. Therefore, we developed an AI solution that assists LUS practitioners and assessed its usefulness in a low resource ICU. METHODS This was a three-phase prospective study. In the first phase, the performance of four different clinical user groups in interpreting LUS clips was assessed. In the second phase, the performance of 57 non-expert clinicians with and without the aid of a bespoke AI tool for LUS interpretation was assessed in retrospective offline clips. In the third phase, we conducted a prospective study in the ICU where 14 clinicians were asked to carry out LUS examinations in 7 patients with and without our AI tool and we interviewed the clinicians regarding the usability of the AI tool. RESULTS The average accuracy of beginners' LUS interpretation was 68.7% [95% CI 66.8-70.7%] compared to 72.2% [95% CI 70.0-75.6%] in intermediate, and 73.4% [95% CI 62.2-87.8%] in advanced users. Experts had an average accuracy of 95.0% [95% CI 88.2-100.0%], which was significantly better than beginners, intermediate and advanced users (p < 0.001). When supported by our AI tool for interpreting retrospectively acquired clips, the non-expert clinicians improved their performance from an average of 68.9% [95% CI 65.6-73.9%] to 82.9% [95% CI 79.1-86.7%], (p < 0.001). In prospective real-time testing, non-expert clinicians improved their baseline performance from 68.1% [95% CI 57.9-78.2%] to 93.4% [95% CI 89.0-97.8%], (p < 0.001) when using our AI tool. The time-to-interpret clips improved from a median of 12.1 s (IQR 8.5-20.6) to 5.0 s (IQR 3.5-8.8), (p < 0.001) and clinicians' median confidence level improved from 3 out of 4 to 4 out of 4 when using our AI tool. CONCLUSIONS AI-assisted LUS can help non-expert clinicians in an LMIC ICU improve their performance in interpreting LUS features more accurately, more quickly and more confidently.
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Affiliation(s)
- Phung Tran Huy Nhat
- Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
- School of Biomedical Engineering Imaging Sciences, King's College London, London, UK.
| | - Nguyen Van Hao
- Mahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand
- Hospital of Tropical Diseases, Ho Chi Minh City, Vietnam
- University of Medicine and Pharmacy, Ho Chi Minh City, Vietnam
| | - Phan Vinh Tho
- Hospital of Tropical Diseases, Ho Chi Minh City, Vietnam
| | - Hamideh Kerdegari
- School of Biomedical Engineering Imaging Sciences, King's College London, London, UK
| | - Luigi Pisani
- Mahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand
| | | | - Le Thanh Phuong
- Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam
| | | | | | - Angela McBride
- Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam
| | - Miguel Xochicale
- School of Biomedical Engineering Imaging Sciences, King's College London, London, UK
| | - Marcus J Schultz
- Mahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand
| | - Reza Razavi
- School of Biomedical Engineering Imaging Sciences, King's College London, London, UK
| | - Andrew P King
- School of Biomedical Engineering Imaging Sciences, King's College London, London, UK
| | - Louise Thwaites
- Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam
- Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, UK
| | | | - Sophie Yacoub
- Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam
- Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, UK
| | - Alberto Gomez
- School of Biomedical Engineering Imaging Sciences, King's College London, London, UK
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11
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Khan U, Afrakhteh S, Mento F, Fatima N, De Rosa L, Custode LL, Azam Z, Torri E, Soldati G, Tursi F, Macioce VN, Smargiassi A, Inchingolo R, Perrone T, Iacca G, Demi L. Benchmark methodological approach for the application of artificial intelligence to lung ultrasound data from COVID-19 patients: From frame to prognostic-level. ULTRASONICS 2023; 132:106994. [PMID: 37015175 PMCID: PMC10060012 DOI: 10.1016/j.ultras.2023.106994] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 03/16/2023] [Accepted: 03/21/2023] [Indexed: 05/29/2023]
Abstract
Automated ultrasound imaging assessment of the effect of CoronaVirus disease 2019 (COVID-19) on lungs has been investigated in various studies using artificial intelligence-based (AI) methods. However, an extensive analysis of state-of-the-art Convolutional Neural Network-based (CNN) models for frame-level scoring, a comparative analysis of aggregation techniques for video-level scoring, together with a thorough evaluation of the capability of these methodologies to provide a clinically valuable prognostic-level score is yet missing within the literature. In addition to that, the impact on the analysis of the posterior probability assigned by the network to the predicted frames as well as the impact of temporal downsampling of LUS data are topics not yet extensively investigated. This paper takes on these challenges by providing a benchmark analysis of methods from frame to prognostic level. For frame-level scoring, state-of-the-art deep learning models are evaluated with additional analysis of best performing model in transfer-learning settings. A novel cross-correlation based aggregation technique is proposed for video and exam-level scoring. Results showed that ResNet-18, when trained from scratch, outperformed the existing methods with an F1-Score of 0.659. The proposed aggregation method resulted in 59.51%, 63.29%, and 84.90% agreement with clinicians at the video, exam, and prognostic levels, respectively; thus, demonstrating improved performances over the state of the art. It was also found that filtering frames based on the posterior probability shows higher impact on the LUS analysis in comparison to temporal downsampling. All of these analysis were conducted over the largest standardized and clinically validated LUS dataset from COVID-19 patients.
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Affiliation(s)
- Umair Khan
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Sajjad Afrakhteh
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Federico Mento
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Noreen Fatima
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Laura De Rosa
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Leonardo Lucio Custode
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Zihadul Azam
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Elena Torri
- Dipartimento di Emergenza ed Urgenza, Humanitas Gavazzeni Bergamo, Bergamo, Italy
| | - Gino Soldati
- Diagnostic and Interventional Ultrasound Unit, Valle del Serchio General Hospital, Lucca, Italy
| | | | | | - Andrea Smargiassi
- Pulmonary Medicine Unit, Department of Medical and Surgical Sciences, Fondazione Policlinico Universitario Agostino Gemelli IRCCS, Rome, Italy
| | - Riccardo Inchingolo
- Pulmonary Medicine Unit, Department of Medical and Surgical Sciences, Fondazione Policlinico Universitario Agostino Gemelli IRCCS, Rome, Italy
| | - Tiziano Perrone
- Dipartimento di Emergenza ed Urgenza, Humanitas Gavazzeni Bergamo, Bergamo, Italy
| | - Giovanni Iacca
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Libertario Demi
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy.
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12
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Fatima N, Mento F, Zanforlin A, Smargiassi A, Torri E, Perrone T, Demi L. Human-to-AI Interrater Agreement for Lung Ultrasound Scoring in COVID-19 Patients. JOURNAL OF ULTRASOUND IN MEDICINE : OFFICIAL JOURNAL OF THE AMERICAN INSTITUTE OF ULTRASOUND IN MEDICINE 2023; 42:843-851. [PMID: 35796343 PMCID: PMC9350219 DOI: 10.1002/jum.16052] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Accepted: 06/17/2022] [Indexed: 05/18/2023]
Abstract
OBJECTIVES Lung ultrasound (LUS) has sparked significant interest during COVID-19. LUS is based on the detection and analysis of imaging patterns. Vertical artifacts and consolidations are some of the recognized patterns in COVID-19. However, the interrater reliability (IRR) of these findings has not been yet thoroughly investigated. The goal of this study is to assess IRR in LUS COVID-19 data and determine how many LUS videos and operators are required to obtain a reliable result. METHODS A total of 1035 LUS videos from 59 COVID-19 patients were included. Videos were randomly selected from a dataset of 1807 videos and scored by six human operators (HOs). The videos were also analyzed by artificial intelligence (AI) algorithms. Fleiss' kappa coefficient results are presented, evaluated at both the video and prognostic levels. RESULTS Findings show a stable agreement when evaluating a minimum of 500 videos. The statistical analysis illustrates that, at a video level, a Fleiss' kappa coefficient of 0.464 (95% confidence interval [CI] = 0.455-0.473) and 0.404 (95% CI = 0.396-0.412) is obtained for pairs of HOs and for AI versus HOs, respectively. At prognostic level, a Fleiss' kappa coefficient of 0.505 (95% CI = 0.448-0.562) and 0.506 (95% CI = 0.458-0.555) is obtained for pairs of HOs and for AI versus HOs, respectively. CONCLUSIONS To examine IRR and obtain a reliable evaluation, a minimum of 500 videos are recommended. Moreover, the employed AI algorithms achieve results that are comparable with HOs. This research further provides a methodology that can be useful to benchmark future LUS studies.
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Affiliation(s)
- Noreen Fatima
- Department of Information Engineering and Computer ScienceUniversity of TrentoTrentoItaly
- UltraAITrentoItaly
| | - Federico Mento
- Department of Information Engineering and Computer ScienceUniversity of TrentoTrentoItaly
| | | | - Andrea Smargiassi
- Pulmonary Medicine Unit, Department of Medical and Surgical SciencesFondazione Policlinico Universitario A. Gemelli IRCCSRomeItaly
| | - Elena Torri
- Emergency DepartmentHumanitas GavazzeniBergamoItaly
| | - Tiziano Perrone
- Emergency DepartmentHumanitas GavazzeniBergamoItaly
- Department of Internal MedicineIRCCS San Matteo Hospital Foundation, University of PaviaPaviaItaly
| | - Libertario Demi
- Department of Information Engineering and Computer ScienceUniversity of TrentoTrentoItaly
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13
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Demi L, Wolfram F, Klersy C, De Silvestri A, Ferretti VV, Muller M, Miller D, Feletti F, Wełnicki M, Buda N, Skoczylas A, Pomiecko A, Damjanovic D, Olszewski R, Kirkpatrick AW, Breitkreutz R, Mathis G, Soldati G, Smargiassi A, Inchingolo R, Perrone T. New International Guidelines and Consensus on the Use of Lung Ultrasound. JOURNAL OF ULTRASOUND IN MEDICINE : OFFICIAL JOURNAL OF THE AMERICAN INSTITUTE OF ULTRASOUND IN MEDICINE 2023; 42:309-344. [PMID: 35993596 PMCID: PMC10086956 DOI: 10.1002/jum.16088] [Citation(s) in RCA: 128] [Impact Index Per Article: 64.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 06/28/2022] [Accepted: 07/31/2022] [Indexed: 05/02/2023]
Abstract
Following the innovations and new discoveries of the last 10 years in the field of lung ultrasound (LUS), a multidisciplinary panel of international LUS experts from six countries and from different fields (clinical and technical) reviewed and updated the original international consensus for point-of-care LUS, dated 2012. As a result, a total of 20 statements have been produced. Each statement is complemented by guidelines and future developments proposals. The statements are furthermore classified based on their nature as technical (5), clinical (11), educational (3), and safety (1) statements.
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Affiliation(s)
- Libertario Demi
- Department of Information Engineering and Computer ScienceUniversity of TrentoTrentoItaly
| | - Frank Wolfram
- Department of Thoracic and Vascular SurgerySRH Wald‐Klinikum GeraGeraGermany
| | - Catherine Klersy
- Unit of Clinical Epidemiology and BiostatisticsFondazione IRCCS Policlinico S. MatteoPaviaItaly
| | - Annalisa De Silvestri
- Unit of Clinical Epidemiology and BiostatisticsFondazione IRCCS Policlinico S. MatteoPaviaItaly
| | | | - Marie Muller
- Department of Mechanical and Aerospace EngineeringNorth Carolina State UniversityRaleighNorth CarolinaUSA
| | - Douglas Miller
- Department of RadiologyMichigan MedicineAnn ArborMichiganUSA
| | - Francesco Feletti
- Department of Diagnostic ImagingUnit of Radiology of the Hospital of Ravenna, Ausl RomagnaRavennaItaly
- Department of Translational Medicine and for RomagnaUniversità Degli Studi di FerraraFerraraItaly
| | - Marcin Wełnicki
- 3rd Department of Internal Medicine and CardiologyMedical University of WarsawWarsawPoland
| | - Natalia Buda
- Department of Internal Medicine, Connective Tissue Disease and GeriatricsMedical University of GdanskGdanskPoland
| | - Agnieszka Skoczylas
- Geriatrics DepartmentNational Institute of Geriatrics, Rheumatology and RehabilitationWarsawPoland
| | - Andrzej Pomiecko
- Clinic of Pediatrics, Hematology and OncologyUniversity Clinical CenterGdańskPoland
| | - Domagoj Damjanovic
- Heart Center Freiburg University, Department of Cardiovascular Surgery, Faculty of MedicineUniversity of FreiburgFreiburgGermany
| | - Robert Olszewski
- Department of Gerontology, Public Health and DidacticsNational Institute of Geriatrics, Rheumatology and RehabilitationWarsawPoland
| | - Andrew W. Kirkpatrick
- Departments of Critical Care Medicine and SurgeryUniversity of Calgary and the TeleMentored Ultrasound Supported Medical Interventions Research GroupCalgaryCanada
| | - Raoul Breitkreutz
- FOM Hochschule für Oekonomie & Management gGmbHDepartment of Health and SocialEssenGermany
| | - Gebhart Mathis
- Emergency UltrasoundAustrian Society for Ultrasound in Medicine and BiologyViennaAustria
| | - Gino Soldati
- Diagnostic and Interventional Ultrasound UnitValledel Serchio General HospitalLuccaItaly
| | - Andrea Smargiassi
- Pulmonary Medicine Unit, Department of Medical and Surgical SciencesFondazione Policlinico Universitario A. Gemelli IRCCSRomeItaly
- Department of Internal Medicine, IRCCS San Matteo Hospital FoundationUniversity of PaviaPaviaItaly
| | - Riccardo Inchingolo
- Pulmonary Medicine Unit, Department of Medical and Surgical SciencesFondazione Policlinico Universitario A. Gemelli IRCCSRomeItaly
- Department of Internal Medicine, IRCCS San Matteo Hospital FoundationUniversity of PaviaPaviaItaly
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14
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Custode LL, Mento F, Tursi F, Smargiassi A, Inchingolo R, Perrone T, Demi L, Iacca G. Multi-objective automatic analysis of lung ultrasound data from COVID-19 patients by means of deep learning and decision trees. Appl Soft Comput 2023; 133:109926. [PMID: 36532127 PMCID: PMC9746028 DOI: 10.1016/j.asoc.2022.109926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Revised: 10/26/2022] [Accepted: 12/08/2022] [Indexed: 12/15/2022]
Abstract
COVID-19 raised the need for automatic medical diagnosis, to increase the physicians' efficiency in managing the pandemic. Among all the techniques for evaluating the status of the lungs of a patient with COVID-19, lung ultrasound (LUS) offers several advantages: portability, cost-effectiveness, safety. Several works approached the automatic detection of LUS imaging patterns related COVID-19 by using deep neural networks (DNNs). However, the decision processes based on DNNs are not fully explainable, which generally results in a lack of trust from physicians. This, in turn, slows down the adoption of such systems. In this work, we use two previously built DNNs as feature extractors at the frame level, and automatically synthesize, by means of an evolutionary algorithm, a decision tree (DT) that aggregates in an interpretable way the predictions made by the DNNs, returning the severity of the patients' conditions according to a LUS score of prognostic value. Our results show that our approach performs comparably or better than previously reported aggregation techniques based on an empiric combination of frame-level predictions made by DNNs. Furthermore, when we analyze the evolved DTs, we discover properties about the DNNs used as feature extractors. We make our data publicly available for further development and reproducibility.
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Affiliation(s)
| | - Federico Mento
- Dept. of Information Engineering and Computer Science, University of Trento, Italy
| | | | - Andrea Smargiassi
- Dept. of Medical and Surgical Sciences, Fondazione Policlinico Universitario A. Gemelli IRCCS, Rome, Italy
| | - Riccardo Inchingolo
- Dept. of Medical and Surgical Sciences, Fondazione Policlinico Universitario A. Gemelli IRCCS, Rome, Italy
| | - Tiziano Perrone
- Dept. of Internal Medicine, IRCCS San Matteo, Pavia, Italy,Emergency Dept., Humanitas Gavazzeni, Bergamo, Italy
| | - Libertario Demi
- Dept. of Information Engineering and Computer Science, University of Trento, Italy
| | - Giovanni Iacca
- Dept. of Information Engineering and Computer Science, University of Trento, Italy,Corresponding author
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15
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Mento F, Khan U, Faita F, Smargiassi A, Inchingolo R, Perrone T, Demi L. State of the Art in Lung Ultrasound, Shifting from Qualitative to Quantitative Analyses. ULTRASOUND IN MEDICINE & BIOLOGY 2022; 48:2398-2416. [PMID: 36155147 PMCID: PMC9499741 DOI: 10.1016/j.ultrasmedbio.2022.07.007] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 07/12/2022] [Accepted: 07/15/2022] [Indexed: 05/27/2023]
Abstract
Lung ultrasound (LUS) has been increasingly expanding since the 1990s, when the clinical relevance of vertical artifacts was first reported. However, the massive spread of LUS is only recent and is associated with the coronavirus disease 2019 (COVID-19) pandemic, during which semi-quantitative computer-aided techniques were proposed to automatically classify LUS data. In this review, we discuss the state of the art in LUS, from semi-quantitative image analysis approaches to quantitative techniques involving the analysis of radiofrequency data. We also discuss recent in vitro and in silico studies, as well as research on LUS safety. Finally, conclusions are drawn highlighting the potential future of LUS.
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Affiliation(s)
- Federico Mento
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Umair Khan
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Francesco Faita
- Institute of Clinical Physiology, National Research Council, Pisa, Italy
| | - Andrea Smargiassi
- Department of Cardiovascular and Thoracic Sciences, Pulmonary Medicine Unit, Fondazione Policlinico Universitario Agostino Gemelli IRCCS, Rome, Italy
| | - Riccardo Inchingolo
- Department of Cardiovascular and Thoracic Sciences, Pulmonary Medicine Unit, Fondazione Policlinico Universitario Agostino Gemelli IRCCS, Rome, Italy
| | | | - Libertario Demi
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy.
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16
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Demi L, Mento F, Di Sabatino A, Fiengo A, Sabatini U, Macioce VN, Robol M, Tursi F, Sofia C, Di Cienzo C, Smargiassi A, Inchingolo R, Perrone T. Lung Ultrasound in COVID-19 and Post-COVID-19 Patients, an Evidence-Based Approach. JOURNAL OF ULTRASOUND IN MEDICINE : OFFICIAL JOURNAL OF THE AMERICAN INSTITUTE OF ULTRASOUND IN MEDICINE 2022; 41:2203-2215. [PMID: 34859905 PMCID: PMC9015439 DOI: 10.1002/jum.15902] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Revised: 10/22/2021] [Accepted: 11/19/2021] [Indexed: 05/18/2023]
Abstract
OBJECTIVES Worldwide, lung ultrasound (LUS) was utilized to assess coronavirus disease 2019 (COVID-19) patients. Often, imaging protocols were however defined arbitrarily and not following an evidence-based approach. Moreover, extensive studies on LUS in post-COVID-19 patients are currently lacking. This study analyses the impact of different LUS imaging protocols on the evaluation of COVID-19 and post-COVID-19 LUS data. METHODS LUS data from 220 patients were collected, 100 COVID-19 positive and 120 post-COVID-19. A validated and standardized imaging protocol based on 14 scanning areas and a 4-level scoring system was implemented. We utilized this dataset to compare the capability of 5 imaging protocols, respectively based on 4, 8, 10, 12, and 14 scanning areas, to intercept the most important LUS findings. This to evaluate the optimal trade-off between a time-efficient imaging protocol and an accurate LUS examination. We also performed a longitudinal study, aimed at investigating how to eventually simplify the protocol during follow-up. Additionally, we present results on the agreement between AI models and LUS experts with respect to LUS data evaluation. RESULTS A 12-areas protocol emerges as the optimal trade-off, for both COVID-19 and post-COVID-19 patients. For what concerns follow-up studies, it appears not to be possible to reduce the number of scanning areas. Finally, COVID-19 and post-COVID-19 LUS data seem to show differences capable to confuse AI models that were not trained on post-COVID-19 data, supporting the hypothesis of the existence of LUS patterns specific to post-COVID-19 patients. CONCLUSIONS A 12-areas acquisition protocol is recommended for both COVID-19 and post-COVID-19 patients, also during follow-up.
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Affiliation(s)
- Libertario Demi
- Department of Information Engineering and Computer ScienceUniversity of TrentoTrentoItaly
| | - Federico Mento
- Department of Information Engineering and Computer ScienceUniversity of TrentoTrentoItaly
| | - Antonio Di Sabatino
- Department of Internal Medicine, IRCCS San Matteo Hospital FoundationUniversity of PaviaPaviaItaly
| | - Anna Fiengo
- Department of Internal Medicine, IRCCS San Matteo Hospital FoundationUniversity of PaviaPaviaItaly
| | - Umberto Sabatini
- Department of Internal Medicine, IRCCS San Matteo Hospital FoundationUniversity of PaviaPaviaItaly
| | | | - Marco Robol
- Department of Information Engineering and Computer ScienceUniversity of TrentoTrentoItaly
| | | | - Carmelo Sofia
- Pulmonary Medicine Unit, Department of Medical and Surgical SciencesFondazione Policlinico Universitario A. Gemelli IRCCSRomeItaly
| | - Chiara Di Cienzo
- Pulmonary Medicine Unit, Department of Medical and Surgical SciencesFondazione Policlinico Universitario A. Gemelli IRCCSRomeItaly
| | - Andrea Smargiassi
- Pulmonary Medicine Unit, Department of Medical and Surgical SciencesFondazione Policlinico Universitario A. Gemelli IRCCSRomeItaly
| | - Riccardo Inchingolo
- Pulmonary Medicine Unit, Department of Medical and Surgical SciencesFondazione Policlinico Universitario A. Gemelli IRCCSRomeItaly
| | - Tiziano Perrone
- Department of Internal Medicine, IRCCS San Matteo Hospital FoundationUniversity of PaviaPaviaItaly
- Emergency DepartmentHumanitas GavazzeniBergamoItaly
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17
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An Empirical Analysis of an Optimized Pretrained Deep Learning Model for COVID-19 Diagnosis. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:9771212. [PMID: 35928972 PMCID: PMC9344483 DOI: 10.1155/2022/9771212] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Revised: 06/23/2022] [Accepted: 06/30/2022] [Indexed: 11/17/2022]
Abstract
As a result of the COVID-19 outbreak, which has put the world in an unprecedented predicament, thousands of people have died. Data from structured and unstructured sources are combined to create user-friendly platforms for clinicians and researchers in an integrated bioinformatics approach. The diagnosis and treatment of COVID-19 disease can be accelerated using AI-based platforms. In the battle against the virus, however, researchers and decision-makers must contend with an ever-increasing volume of data, referred to as “big data.” VGG19 and ResNet152V2 pretrained deep learning architectures were used in this study. With these datasets, we could train and fine-tune our model on lung ultrasound frames from healthy people as well as from patients with COVID-19 and pneumonia. In two separate experiments, we evaluated two different classes of predictive models: one against pneumonia and the other against non-COVID-19. COVID-19 can be detected and diagnosed accurately and efficiently using these models, according to the findings. Therefore, the use of these inexpensive and affordable deep learning methods should be considered as a reliable method for the diagnosis of COVID-19.
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18
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Khan U, Mento F, Nicolussi Giacomaz L, Trevisan R, Smargiassi A, Inchingolo R, Perrone T, Demi L. Deep Learning-Based Classification of Reduced Lung Ultrasound Data From COVID-19 Patients. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2022; 69:1661-1669. [PMID: 35320098 DOI: 10.1109/tuffc.2022.3161716] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The application of lung ultrasound (LUS) imaging for the diagnosis of lung diseases has recently captured significant interest within the research community. With the ongoing COVID-19 pandemic, many efforts have been made to evaluate LUS data. A four-level scoring system has been introduced to semiquantitatively assess the state of the lung, classifying the patients. Various deep learning (DL) algorithms supported with clinical validations have been proposed to automate the stratification process. However, no work has been done to evaluate the impact on the automated decision by varying pixel resolution and bit depth, leading to the reduction in size of overall data. This article evaluates the performance of DL algorithm over LUS data with varying pixel and gray-level resolution. The algorithm is evaluated over a dataset of 448 LUS videos captured from 34 examinations of 20 patients. All videos are resampled by a factor of 2, 3, and 4 of original resolution, and quantized to 128, 64, and 32 levels, followed by score prediction. The results indicate that the automated scoring shows negligible variation in accuracy when it comes to the quantization of intensity levels only. Combined effect of intensity quantization with spatial down-sampling resulted in a prognostic agreement ranging from 73.5% to 82.3%.These results also suggest that such level of prognostic agreement can be achieved over evaluation of data reduced to 32 times of its original size. Thus, laying foundation to efficient processing of data in resource constrained environments.
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19
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De Rosa L, L'Abbate S, Kusmic C, Faita F. Applications of artificial intelligence in lung ultrasound: Review of deep learning methods for COVID-19 fighting. Artif Intell Med Imaging 2022; 3:42-54. [DOI: 10.35711/aimi.v3.i2.42] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Revised: 02/22/2022] [Accepted: 04/26/2022] [Indexed: 02/06/2023] Open
Abstract
BACKGROUND The pandemic outbreak of the novel coronavirus disease (COVID-19) has highlighted the need to combine rapid, non-invasive and widely accessible techniques with the least risk of patient’s cross-infection to achieve a successful early detection and surveillance of the disease. In this regard, the lung ultrasound (LUS) technique has been proved invaluable in both the differential diagnosis and the follow-up of COVID-19 patients, and its potential may be destined to evolve. Recently, indeed, LUS has been empowered through the development of automated image processing techniques.
AIM To provide a systematic review of the application of artificial intelligence (AI) technology in medical LUS analysis of COVID-19 patients using the preferred reporting items of systematic reviews and meta-analysis (PRISMA) guidelines.
METHODS A literature search was performed for relevant studies published from March 2020 - outbreak of the pandemic - to 30 September 2021. Seventeen articles were included in the result synthesis of this paper.
RESULTS As part of the review, we presented the main characteristics related to AI techniques, in particular deep learning (DL), adopted in the selected articles. A survey was carried out on the type of architectures used, availability of the source code, network weights and open access datasets, use of data augmentation, use of the transfer learning strategy, type of input data and training/test datasets, and explainability.
CONCLUSION Finally, this review highlighted the existing challenges, including the lack of large datasets of reliable COVID-19-based LUS images to test the effectiveness of DL methods and the ethical/regulatory issues associated with the adoption of automated systems in real clinical scenarios.
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Affiliation(s)
- Laura De Rosa
- Institute of Clinical Physiology, Consiglio Nazionale delle Ricerche, Pisa 56124, Italy
| | - Serena L'Abbate
- Institute of Clinical Physiology, Consiglio Nazionale delle Ricerche, Pisa 56124, Italy
- Institute of Life Sciences, Scuola Superiore Sant’Anna, Pisa 56124, Italy
| | - Claudia Kusmic
- Institute of Clinical Physiology, Consiglio Nazionale delle Ricerche, Pisa 56124, Italy
| | - Francesco Faita
- Institute of Clinical Physiology, Consiglio Nazionale delle Ricerche, Pisa 56124, Italy
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20
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Wang J, Yang X, Zhou B, Sohn JJ, Zhou J, Jacob JT, Higgins KA, Bradley JD, Liu T. Review of Machine Learning in Lung Ultrasound in COVID-19 Pandemic. J Imaging 2022; 8:65. [PMID: 35324620 PMCID: PMC8952297 DOI: 10.3390/jimaging8030065] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2022] [Revised: 03/01/2022] [Accepted: 03/02/2022] [Indexed: 12/25/2022] Open
Abstract
Ultrasound imaging of the lung has played an important role in managing patients with COVID-19-associated pneumonia and acute respiratory distress syndrome (ARDS). During the COVID-19 pandemic, lung ultrasound (LUS) or point-of-care ultrasound (POCUS) has been a popular diagnostic tool due to its unique imaging capability and logistical advantages over chest X-ray and CT. Pneumonia/ARDS is associated with the sonographic appearances of pleural line irregularities and B-line artefacts, which are caused by interstitial thickening and inflammation, and increase in number with severity. Artificial intelligence (AI), particularly machine learning, is increasingly used as a critical tool that assists clinicians in LUS image reading and COVID-19 decision making. We conducted a systematic review from academic databases (PubMed and Google Scholar) and preprints on arXiv or TechRxiv of the state-of-the-art machine learning technologies for LUS images in COVID-19 diagnosis. Openly accessible LUS datasets are listed. Various machine learning architectures have been employed to evaluate LUS and showed high performance. This paper will summarize the current development of AI for COVID-19 management and the outlook for emerging trends of combining AI-based LUS with robotics, telehealth, and other techniques.
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Affiliation(s)
- Jing Wang
- Department of Radiation Oncology, Emory University, Atlanta, GA 30322, USA; (J.W.); (X.Y.); (B.Z.); (J.Z.); (K.A.H.); (J.D.B.)
| | - Xiaofeng Yang
- Department of Radiation Oncology, Emory University, Atlanta, GA 30322, USA; (J.W.); (X.Y.); (B.Z.); (J.Z.); (K.A.H.); (J.D.B.)
| | - Boran Zhou
- Department of Radiation Oncology, Emory University, Atlanta, GA 30322, USA; (J.W.); (X.Y.); (B.Z.); (J.Z.); (K.A.H.); (J.D.B.)
| | - James J. Sohn
- Department of Radiation Oncology, Virginia Commonwealth University, Richmond, VA 23219, USA;
| | - Jun Zhou
- Department of Radiation Oncology, Emory University, Atlanta, GA 30322, USA; (J.W.); (X.Y.); (B.Z.); (J.Z.); (K.A.H.); (J.D.B.)
| | - Jesse T. Jacob
- Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, GA 30322, USA;
| | - Kristin A. Higgins
- Department of Radiation Oncology, Emory University, Atlanta, GA 30322, USA; (J.W.); (X.Y.); (B.Z.); (J.Z.); (K.A.H.); (J.D.B.)
| | - Jeffrey D. Bradley
- Department of Radiation Oncology, Emory University, Atlanta, GA 30322, USA; (J.W.); (X.Y.); (B.Z.); (J.Z.); (K.A.H.); (J.D.B.)
| | - Tian Liu
- Department of Radiation Oncology, Emory University, Atlanta, GA 30322, USA; (J.W.); (X.Y.); (B.Z.); (J.Z.); (K.A.H.); (J.D.B.)
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21
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Zhao L, Lediju Bell MA. A Review of Deep Learning Applications in Lung Ultrasound Imaging of COVID-19 Patients. BME FRONTIERS 2022; 2022:9780173. [PMID: 36714302 PMCID: PMC9880989 DOI: 10.34133/2022/9780173] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
The massive and continuous spread of COVID-19 has motivated researchers around the world to intensely explore, understand, and develop new techniques for diagnosis and treatment. Although lung ultrasound imaging is a less established approach when compared to other medical imaging modalities such as X-ray and CT, multiple studies have demonstrated its promise to diagnose COVID-19 patients. At the same time, many deep learning models have been built to improve the diagnostic efficiency of medical imaging. The integration of these initially parallel efforts has led multiple researchers to report deep learning applications in medical imaging of COVID-19 patients, most of which demonstrate the outstanding potential of deep learning to aid in the diagnosis of COVID-19. This invited review is focused on deep learning applications in lung ultrasound imaging of COVID-19 and provides a comprehensive overview of ultrasound systems utilized for data acquisition, associated datasets, deep learning models, and comparative performance.
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Affiliation(s)
- Lingyi Zhao
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, USA
| | - Muyinatu A. Lediju Bell
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, USA,Department of Computer Science, Johns Hopkins University, Baltimore, USA,Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA
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22
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Demi L, Muller M. Introduction to the special issue on lung ultrasound. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2021; 150:4151. [PMID: 34972307 DOI: 10.1121/10.0007274] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 10/28/2021] [Indexed: 06/14/2023]
Abstract
The potential of lung ultrasound (LUS) has become manifest in the light of the recent COVID-19 pandemic. The need for a point-of care, quantitative, and widely available assessment of lung condition is critical. However, conventional ultrasound imaging was never designed for lung assessment. This limits LUS to the subjective and qualitative interpretation of artifacts and imaging patterns visible on ultrasound images. A number of research groups have begun to tackle this limitation, and this special issue reports on their most recent findings. Through in silico, in vitro, and in vivo studies (preclinical animal studies and pilot clinical studies on human subjects), the research presented aims at understanding and modelling the physical phenomena involved in ultrasound propagation, and at leveraging these phenomena to extract semi-quantitative and quantitative information relevant to estimate changes in lung structure. These studies are the first steps in unlocking the full potential of lung ultrasound as a relevant tool for lung assessment.
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Affiliation(s)
- Libertario Demi
- Ultrasound Laboratory Trento (ULTRa), Department of Information Engineering and Computer Science, University of Trento, Via Sommarive 9, 38123 Trento, Italy
| | - Marie Muller
- Department of Mechanical and Aerospace Engineering, North Carolina State University, Raleigh, North Carolina 27695, USA
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23
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Laursen CB, Prosch H, Harders SM, Falster C, Davidsen JR, Tárnoki ÁD. COVID-19: imaging. COVID-19 2021. [DOI: 10.1183/2312508x.10012421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/04/2025]
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24
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Arntfield R, Wu D, Tschirhart J, VanBerlo B, Ford A, Ho J, McCauley J, Wu B, Deglint J, Chaudhary R, Dave C, VanBerlo B, Basmaji J, Millington S. Automation of Lung Ultrasound Interpretation via Deep Learning for the Classification of Normal versus Abnormal Lung Parenchyma: A Multicenter Study. Diagnostics (Basel) 2021; 11:2049. [PMID: 34829396 PMCID: PMC8621216 DOI: 10.3390/diagnostics11112049] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 10/30/2021] [Accepted: 10/31/2021] [Indexed: 12/12/2022] Open
Abstract
Lung ultrasound (LUS) is an accurate thoracic imaging technique distinguished by its handheld size, low-cost, and lack of radiation. User dependence and poor access to training have limited the impact and dissemination of LUS outside of acute care hospital environments. Automated interpretation of LUS using deep learning can overcome these barriers by increasing accuracy while allowing point-of-care use by non-experts. In this multicenter study, we seek to automate the clinically vital distinction between A line (normal parenchyma) and B line (abnormal parenchyma) on LUS by training a customized neural network using 272,891 labelled LUS images. After external validation on 23,393 frames, pragmatic clinical application at the clip level was performed on 1162 videos. The trained classifier demonstrated an area under the receiver operating curve (AUC) of 0.96 (±0.02) through 10-fold cross-validation on local frames and an AUC of 0.93 on the external validation dataset. Clip-level inference yielded sensitivities and specificities of 90% and 92% (local) and 83% and 82% (external), respectively, for detecting the B line pattern. This study demonstrates accurate deep-learning-enabled LUS interpretation between normal and abnormal lung parenchyma on ultrasound frames while rendering diagnostically important sensitivity and specificity at the video clip level.
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Affiliation(s)
- Robert Arntfield
- Division of Critical Care Medicine, Western University, London, ON N6A 5C1, Canada; (C.D.); (J.B.)
| | - Derek Wu
- Schulich School of Medicine and Dentistry, Western University, London, ON N6A 5C1, Canada; (D.W.); (J.T.); (J.H.); (R.C.)
| | - Jared Tschirhart
- Schulich School of Medicine and Dentistry, Western University, London, ON N6A 5C1, Canada; (D.W.); (J.T.); (J.H.); (R.C.)
| | - Blake VanBerlo
- Faculty of Mathematics, University of Waterloo, Waterloo, ON N2L 3G1, Canada;
| | - Alex Ford
- Independent Researcher, London, ON N6A 1L8, Canada;
| | - Jordan Ho
- Schulich School of Medicine and Dentistry, Western University, London, ON N6A 5C1, Canada; (D.W.); (J.T.); (J.H.); (R.C.)
| | - Joseph McCauley
- Faculty of Engineering, University of Waterloo, Waterloo, ON N2L 3G1, Canada;
| | - Benjamin Wu
- Independent Researcher, London, ON N6C 4P9, Canada;
| | - Jason Deglint
- Faculty of Systems Design Engineering, University of Waterloo, Waterloo, ON N2L 3G1, Canada;
| | - Rushil Chaudhary
- Schulich School of Medicine and Dentistry, Western University, London, ON N6A 5C1, Canada; (D.W.); (J.T.); (J.H.); (R.C.)
| | - Chintan Dave
- Division of Critical Care Medicine, Western University, London, ON N6A 5C1, Canada; (C.D.); (J.B.)
| | - Bennett VanBerlo
- Faculty of Engineering, University of Western Ontario, London, ON N6A 5C1, Canada;
| | - John Basmaji
- Division of Critical Care Medicine, Western University, London, ON N6A 5C1, Canada; (C.D.); (J.B.)
| | - Scott Millington
- Department of Critical Care Medicine, University of Ottawa, Ottawa, ON K1N 6N5, Canada;
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