1
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Huang YZ, Yang R, Zhang L, Chen ZN. Phosphorescent metallaknots of Au(I)-bis(acetylide) strands directed by Cu(I) π-coordination. Proc Natl Acad Sci U S A 2024; 121:e2403721121. [PMID: 39298486 PMCID: PMC11441568 DOI: 10.1073/pnas.2403721121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 07/25/2024] [Indexed: 09/21/2024] Open
Abstract
Knots containing metal atoms as part of their continuous strand backbone are termed as metallaknots. While several metallaknots have been synthesized through one-pot self-assembly, the designed synthesis of metallaknots by controlling the arrangement of entanglements and strands connectivity remains unexplored. Here, we report the synthesis of metallaknots composed with Au(I)-bis(acetylide) linkages and templated by Cu(I) ions. Varying the ratio of the building blocks results in the switchable formation of two trefoil knots with different stoichiometries and symmetries (C2 or D3) and an entangled metalla-complex. While the entangled complex formed serendipitously, the strand ends can be subsequently linked through coordinative closure to generate a 41 metallaknot in a highly designable fashion. The comparable structural characteristics of resulting metalla-complexes allow us to probe the correlations between their topologies and photophysical properties, showing the backbone rigidity of knots endows complexes with excellent phosphorescent properties. This strategy, in conjunction with the coordinative closure approach, provides a straightforward route for the formation of highly phosphorescent metallaknots that were previously challenging to access.
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Affiliation(s)
- Ya-Zi Huang
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou350002, P. R. China
- Fujian College, University of Chinese Academy of Sciences, Beijing100039, P. R. China
| | - Raorao Yang
- Frontiers Science Center of Molecular Intelligent Synthesis, East China Normal University, Shanghai200062, P. R. China
| | - Liang Zhang
- Frontiers Science Center of Molecular Intelligent Synthesis, East China Normal University, Shanghai200062, P. R. China
| | - Zhong-Ning Chen
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou350002, P. R. China
- Fujian College, University of Chinese Academy of Sciences, Beijing100039, P. R. China
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2
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Zhou Q, Dong X, Chi G, Cao XY, Zhang N, Wu S, Ma Y, Zhang ZH, Zhang L. Cinquefoil Knot Possessing Dynamic and Tunable Metal Coordination. J Am Chem Soc 2024; 146:22405-22412. [PMID: 39099103 DOI: 10.1021/jacs.4c05376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/06/2024]
Abstract
While the majority of knots are made from the metal-template approach, the use of entangled, constrained knotted loops to modulate the coordination of the metal ions remains inadequately elucidated. Here, we report on the coordination chemistry of a 140-atom-long cinquefoil knotted strand comprising five tridentate and five bidentate chelating vacancies. The knotted loop is prepared through the self-assembly of asymmetric "3 + 2" dentate ligands with copper(II) ions that favor five-coordination geometry. The formation of the copper(II) pentameric helicate is confirmed by X-ray crystallography, while the corresponding copper(II) knot is characterized by XPS and LR-/HR ESI-MS. Upon removal of the original template, the knotted ligand facilitates zinc(II) ions, which typically form four- or six-coordination geometries, resulting in the formation of an otherwise inaccessible zinc(II) metallic knot with coordinatively unsaturated metal centers. The coordination numbers and geometries of the zinc(II) cations are undoubtedly determined by X-ray crystallography. Despite the kinetically labile nature and high reversibility of the zinc(II) complex preventing the detection of 5-to-6 coordination equilibrium in solution, the effects on metal-ion coordination induced by knotting hold promise for fine-tuning the coordination of metal complexes.
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Affiliation(s)
- Qi Zhou
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, P. R. China
| | - Xue Dong
- Collaborative Innovation Center of Chemistry for Energy Materials (iChEM) and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Guanyu Chi
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, P. R. China
| | - Xiao-Yu Cao
- Collaborative Innovation Center of Chemistry for Energy Materials (iChEM) and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Ningjin Zhang
- Instrumental Analytical Center of Shanghai Jiao Tong University, Shanghai 201100, P. R. China
| | - Shitao Wu
- School of Physical Science and Technology and Shanghai Key Laboratory of High-Resolution Electron Microscopy, ShanghaiTech University, Shanghai 201210, P. R. China
| | - Yanhang Ma
- School of Physical Science and Technology and Shanghai Key Laboratory of High-Resolution Electron Microscopy, ShanghaiTech University, Shanghai 201210, P. R. China
| | - Zhi-Hui Zhang
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, P. R. China
| | - Liang Zhang
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, P. R. China
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3
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Davis WA, Zakharov LN, Johnson DW. Pnictogen-Assisted Self-Assembly as a Means to Study Mediated Thiol/Disulfide Exchange in Supramolecular Dynamic Covalent Assemblies. Chemistry 2024:e202402702. [PMID: 39121347 DOI: 10.1002/chem.202402702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Revised: 08/07/2024] [Accepted: 08/08/2024] [Indexed: 08/11/2024]
Abstract
Thiol-disulfide interchange has been a large field of study for both biochemists and physical organic chemists alike due to its prevalence within biological systems and fundamentally interesting dynamic nature. More recently, efforts have been made to harness the power of this reversible reaction to make self-assembling systems of macrocyclic molecules. However, less effort has focused on the fundamental work of isolating these assemblies and studying the factors that control the assembly and sorting of these emerging cyclic systems. A more complete fundamental understanding of factors controlling such self-assembly could also improve understanding of the complex systems biology of thiol exchange while also aiding in the design of dynamic thiol assembly to enable applications ranging from drug delivery and biosensing to new materials synthesis. We have shown previously that pnictogen-assisted self-assembly enables formation of discrete disulfide macrocycles and cages without competition from polymer formation for a wide variety of alkyl thiols. In this study, we report the expansion of pnictogen-assisted self-assembly methods to form disulfide bearing macrocycles from aryl thiol containing ligands, allowing access to previously unreported molecules. These studies complement classical physical organic and chemical biology studies on the rates and products of aryl thiol oxidation to disulfides, and we show that this self-assembly method revises some prevailing wisdom from these key classical studies by providing new product distributions and new isolable products in cyclic disulfide formation.
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Affiliation(s)
- Willow A Davis
- Department of Chemistry & Biochemistry and Materials Science Institute, University of Oregon, Eugene, OR, 97403-1253, USA
| | - Lev N Zakharov
- Center for Advanced Materials Characterization in Oregon (CAMCOR), University of Oregon, Eugene, OR, 97403, USA
| | - Darren W Johnson
- Department of Chemistry & Biochemistry and Materials Science Institute, University of Oregon, Eugene, OR, 97403-1253, USA
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4
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Zhong J, Sun Z, Zhang L, Whitehead GFS, Vitorica-Yrezabal IJ, Leigh DA. Folding a Molecular Strand into a Trefoil Knot of Single Handedness with Co(II)/Co(III) Chaperones. J Am Chem Soc 2024; 146:21762-21768. [PMID: 39060953 PMCID: PMC11311214 DOI: 10.1021/jacs.4c05953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Revised: 07/01/2024] [Accepted: 07/18/2024] [Indexed: 07/28/2024]
Abstract
We report the synthesis of a right-handed (Δ-stereochemistry of strand crossings) trefoil knot from a single molecular strand containing three pyrazine-2,5-dicarboxamide units adjacent to point-chiral centers and six pyridine moieties. The oligomeric ligand strand folds into an overhand (open-trefoil) knot through the assistance of coordinatively dynamic Co(II) "chaperones" that drive the formation of a three-metal-ion circular helicate. The entangled structure is kinetically locked by oxidation to Co(III) and covalently captured by ring-closing olefin metathesis to generate a trefoil knot of single topological handedness. The stereochemistry of the strand crossings in the metal-coordinated overhand knot is governed by the stereochemistry of the point-chiral carbon centers in the ligand strand. The overhand and trefoil knots were characterized by NMR spectroscopy, mass spectrometry, and X-ray crystallography. Removal of the metal ions from the knot, followed by hydrogenation of the alkene, yielded the wholly organic trefoil knot. The metal-free knot and parent ligand were investigated by circular dichroism (CD) spectroscopy. The CD spectra indicate that the topological stereochemistry of the knot has a greater effect on the asymmetry of the chromophore environment than do the point-chiral centers of the strand.
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Affiliation(s)
- Jiankang Zhong
- Department
of Chemistry, University of Manchester, Manchester M13 9PL, U.K.
| | - Zhanhu Sun
- School
of Chemistry and Molecular Engineering, East China Normal University, 200062 Shanghai, China
| | - Liang Zhang
- School
of Chemistry and Molecular Engineering, East China Normal University, 200062 Shanghai, China
| | | | | | - David A. Leigh
- School
of Chemistry and Molecular Engineering, East China Normal University, 200062 Shanghai, China
- Department
of Chemistry, University of Manchester, Manchester M13 9PL, U.K.
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5
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Liu SY, Li S, Ukai S, Nozawa R, Fukui N, Sugimori R, Kishi R, Shinokubo H. Homochiral and Heterochiral Self-Sorting Assemblies of Antiaromatic Ni(II) Norcorrole Dimers. Chemistry 2024; 30:e202400292. [PMID: 38769938 DOI: 10.1002/chem.202400292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 05/19/2024] [Accepted: 05/21/2024] [Indexed: 05/22/2024]
Abstract
Recently, π-π stacked antiaromatic π-systems have received considerable attention because they can exhibit stacked-ring aromaticity due to substantial intermolecular orbital interactions. Here, we report three antiaromatic norcorrole dimers that self-assemble to form supramolecular architectures through chiral self-sorting. A 2,2'-linked norcorrole dimer with 3,5-di-tert-butylphenyl groups forms a π-stacked dimer both in solid and solution states via homochiral self-sorting. Its association constant in solution is (3.6±1.7)×105 M-1 at 20 °C. In the solid state, 3,3'-linked norcorrole dimers with 3,5-di-tert-butylphenyl and phenyl groups afford macrocyclic and helical supramolecular assemblies via heterochiral and homochiral self-sorting, respectively. Notably, the subtle modification in the substituent resulted in a complete change in the structure of the aggregates and the chiral self-sorting mode. The present findings demonstrate that structural manipulation in antiaromatic monomer units leads to the formation of various supramolecular assemblies on the basis of the attractive interactions between antiaromatic π-systems.
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Affiliation(s)
- Si-Yu Liu
- Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, and Integrated Research Consortium on Chemical Science (IRCCS), Nagoya University, Furo-cho, Chikusa-ku, 464-8603, Nagoya, Japan
| | - Sha Li
- Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, and Integrated Research Consortium on Chemical Science (IRCCS), Nagoya University, Furo-cho, Chikusa-ku, 464-8603, Nagoya, Japan
| | - Shusaku Ukai
- Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, and Integrated Research Consortium on Chemical Science (IRCCS), Nagoya University, Furo-cho, Chikusa-ku, 464-8603, Nagoya, Japan
| | - Ryo Nozawa
- Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, and Integrated Research Consortium on Chemical Science (IRCCS), Nagoya University, Furo-cho, Chikusa-ku, 464-8603, Nagoya, Japan
| | - Norihito Fukui
- Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, and Integrated Research Consortium on Chemical Science (IRCCS), Nagoya University, Furo-cho, Chikusa-ku, 464-8603, Nagoya, Japan
- PRESTO, Japan Science and Technology Agency (JST), Kawaguchi, 332-0012, Saitama, Japan
| | - Ryota Sugimori
- Department of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, 560-8531, Toyonaka, Osaka, Japan
| | - Ryohei Kishi
- Department of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, 560-8531, Toyonaka, Osaka, Japan
| | - Hiroshi Shinokubo
- Department of Molecular and Macromolecular Chemistry, Graduate School of Engineering, and Integrated Research Consortium on Chemical Science (IRCCS), Nagoya University, Furo-cho, Chikusa-ku, 464-8603, Nagoya, Japan
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6
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Dascalu AE, Furman C, Landrieu I, Cantrelle FX, Mortelecque J, Grolaux G, Gillery P, Tessier F, Lipka E, Billamboz M, Boulanger E, Ghinet A. Development of Receptor for Advanced Glycation End Products (RAGE) ligands through target directed dynamic combinatorial chemistry: a novel class of possible antagonists. Chemistry 2024; 30:e202303255. [PMID: 38317623 DOI: 10.1002/chem.202303255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Revised: 02/05/2024] [Accepted: 02/06/2024] [Indexed: 02/07/2024]
Abstract
RAGE is a transmembrane receptor of immunoglobulin family that can bind various endogenous and exogenous ligands, initiating the inflammatory downstream signaling pathways, including inflammaging. Therefore, RAGE represents an attractive drug target for age-related diseases. For the development of small-molecule RAGE antagonists, we employed protein-templated dynamic combinatorial chemistry (ptDCC) using RAGE's VC1 domain as a template, the first application of this approach in the context of RAGE. The affinities of DCC hits were validated using microscale thermophoresis. Subsequent screening against AGE2 (glyceraldehyde-modified AGE)-sRAGE (solubleRAGE) (AGE2-BSA/sRAGE) interaction using ELISA tests led to the identification of antagonists with micromolar potency. Our findings not only demonstrate the successful application of ptDCC on RAGE but also highlight its potential to address the pressing need for alternative strategies for the development of small-molecule RAGE antagonists, an area of research that has experienced a slowdown in recent years.
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Affiliation(s)
- Anca-Elena Dascalu
- Junia, Health and Environment, Laboratory of Sustainable Chemistry and Health, F-59000, Lille, France
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
- 'Alexandru Ioan Cuza' University of Iasi, Faculty of Chemistry, Bd. Carol I, Nr. 11, 700506, Iasi, Romania
| | - Christophe Furman
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
- Univ. Lille, UFR Pharmacie, BP 83, F-59006, Lille, France
| | - Isabelle Landrieu
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
- CNRS EMR9002 Integrative Structural Biology, F-59000, Lille, France
| | - François-Xavier Cantrelle
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
- CNRS EMR9002 Integrative Structural Biology, F-59000, Lille, France
| | - Justine Mortelecque
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
- CNRS EMR9002 Integrative Structural Biology, F-59000, Lille, France
| | - Gaëlle Grolaux
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
| | - Philippe Gillery
- Univ. Reims Champagne-Ardenne, Laboratory of Biochemistry and Molecular Biology CNRS/URCA UMR 7369 MEDyC, Faculty of Medicine, F-51095, Reims, France
| | - Frédéric Tessier
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
- Univ. Lille, UFR Pharmacie, BP 83, F-59006, Lille, France
| | - Emmanuelle Lipka
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
- Univ. Lille, UFR Pharmacie, BP 83, F-59006, Lille, France
| | - Muriel Billamboz
- Junia, Health and Environment, Laboratory of Sustainable Chemistry and Health, F-59000, Lille, France
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
| | - Eric Boulanger
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
| | - Alina Ghinet
- Junia, Health and Environment, Laboratory of Sustainable Chemistry and Health, F-59000, Lille, France
- Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, UMR 1167 - RID-AGE - Risk Factors and Molecular Determinants of Aging-Related Diseases, F-59000, Lille, France
- 'Alexandru Ioan Cuza' University of Iasi, Faculty of Chemistry, Bd. Carol I, Nr. 11, 700506, Iasi, Romania
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7
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Cougnon FBL, Stefankiewicz AR, Ulrich S. Dynamic covalent synthesis. Chem Sci 2024; 15:879-895. [PMID: 38239698 PMCID: PMC10793650 DOI: 10.1039/d3sc05343a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 12/10/2023] [Indexed: 01/22/2024] Open
Abstract
Dynamic covalent synthesis aims to precisely control the assembly of simple building blocks linked by reversible covalent bonds to generate a single, structurally complex, product. In recent years, considerable progress in the programmability of dynamic covalent systems has enabled easy access to a broad range of assemblies, including macrocycles, shape-persistent cages, unconventional foldamers and mechanically-interlocked species (catenanes, knots, etc.). The reversibility of the covalent linkages can be either switched off to yield stable, isolable products or activated by specific physico-chemical stimuli, allowing the assemblies to adapt and respond to environmental changes in a controlled manner. This activatable dynamic property makes dynamic covalent assemblies particularly attractive for the design of complex matter, smart chemical systems, out-of-equilibrium systems, and molecular devices.
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Affiliation(s)
- Fabien B L Cougnon
- Department of Chemistry and Nanoscience Centre, University of Jyväskylä Jyväskylä Finland
| | - Artur R Stefankiewicz
- Centre for Advanced Technology and Faculty of Chemistry, Adam Mickiewicz University Poznań Poland
| | - Sébastien Ulrich
- Institut des Biomolécules Max Mousseron (IBMM), Université de Montpellier, CNRS, ENSCM Montpellier France
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8
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Du T, Shen B, Dai J, Zhang M, Chen X, Yu P, Liu Y. Controlled and Regioselective Ring-Opening Polymerization for Poly(disulfide)s by Anion-Binding Catalysis. J Am Chem Soc 2023; 145:27788-27799. [PMID: 37987648 DOI: 10.1021/jacs.3c10708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
Abstract
Poly(disulfide)s are an emerging class of sulfur-containing polymers with applications in medicine, energy, and functional materials. However, the constituent dynamic covalent S-S bond is highly reactive in the presence of the sulfide (RS-) anion, imposing a persistent challenge to control the polymerization. Here, we report an anion-binding approach to arrest the high reactivity of the RS- chain end to control the synthesis of linear poly(disulfide)s, realizing a rapid, living ring-opening polymerization of 1,2-dithiolanes with narrow dispersity and high regioselectivity (Mw/Mn ∼ 1.1, Ps ∼ 0.85). Mechanistic studies support the formation of a thiourea-base-sulfide ternary complex as the catalytically active species during the chain propagation. Theoretical analyses reveal a synergistic catalytic model where the catalyst preorganizes the protonated base and anionic chain end to establish spatial confinement over the bound monomer, effecting the observed regioselectivity. The catalytic system is amenable to monomers with various functional groups, and semicrystalline polymers are also obtained from lipoic acid derivatives by enhancing the regioselectivity.
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Affiliation(s)
- Tianyi Du
- Beijing National Laboratory for Molecular Sciences, Center for Soft Matter Science and Engineering, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Boming Shen
- Department of Chemistry and Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen 518055, China
| | - Jieyu Dai
- Beijing National Laboratory for Molecular Sciences, Center for Soft Matter Science and Engineering, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Miaomiao Zhang
- Beijing National Laboratory for Molecular Sciences, Center for Soft Matter Science and Engineering, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Xingjian Chen
- Beijing National Laboratory for Molecular Sciences, Center for Soft Matter Science and Engineering, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Peiyuan Yu
- Department of Chemistry and Shenzhen Grubbs Institute, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology, Shenzhen 518055, China
| | - Yun Liu
- Beijing National Laboratory for Molecular Sciences, Center for Soft Matter Science and Engineering, Key Laboratory of Polymer Chemistry and Physics of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
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9
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Chen Q, Li Z, Lei Y, Chen Y, Tang H, Wu G, Sun B, Wei Y, Jiao T, Zhang S, Huang F, Wang L, Li H. The sharp structural switch of covalent cages mediated by subtle variation of directing groups. Nat Commun 2023; 14:4627. [PMID: 37532710 PMCID: PMC10397198 DOI: 10.1038/s41467-023-40255-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Accepted: 07/19/2023] [Indexed: 08/04/2023] Open
Abstract
It is considered a more formidable task to precisely control the self-assembled products containing purely covalent components, due to a lack of intrinsic templates such as transition metals to suppress entropy loss during self-assembly. Here, we attempt to tackle this challenge by using directing groups. That is, the self-assembly products of condensing a 1:2 mixture of a tetraformyl and a biamine can be precisely controlled by slightly changing the substituent groups in the aldehyde precursor. This is because different directing groups provide hydrogen bonds with different modes to the adjacent imine units, so that the building blocks are endowed with totally different conformations. Each conformation favors the formation of a specific product that is thus produced selectively, including chiral and achiral cages. These results of using a specific directing group to favor a target product pave the way for accomplishing atom economy in synthesizing purely covalent molecules without relying on toxic transition metal templates.
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Affiliation(s)
- Qiong Chen
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Zhaoyong Li
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
- Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310058, PR China
| | - Ye Lei
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Yixin Chen
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Hua Tang
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Guangcheng Wu
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Bin Sun
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, PR China
| | - Yuxi Wei
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Tianyu Jiao
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Songna Zhang
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, PR China.
| | - Feihe Huang
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China.
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, PR China.
| | - Linjun Wang
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China.
- Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310058, PR China.
| | - Hao Li
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China.
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, PR China.
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10
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Abstract
Porous organic cages (POCs) are a relatively new class of low-density crystalline materials that have emerged as a versatile platform for investigating molecular recognition, gas storage and separation, and proton conduction, with potential applications in the fields of porous liquids, highly permeable membranes, heterogeneous catalysis, and microreactors. In common with highly extended porous structures, such as metal-organic frameworks (MOFs), covalent organic frameworks (COFs), and porous organic polymers (POPs), POCs possess all of the advantages of highly specific surface areas, porosities, open pore channels, and tunable structures. In addition, they have discrete molecular structures and exhibit good to excellent solubilities in common solvents, enabling their solution dispersibility and processability─properties that are not readily available in the case of the well-established, insoluble, extended porous frameworks. Here, we present a critical review summarizing in detail recent progress and breakthroughs─especially during the past five years─of all the POCs while taking a close look at their strategic design, precise synthesis, including both irreversible bond-forming chemistry and dynamic covalent chemistry, advanced characterization, and diverse applications. We highlight representative POC examples in an attempt to gain some understanding of their structure-function relationships. We also discuss future challenges and opportunities in the design, synthesis, characterization, and application of POCs. We anticipate that this review will be useful to researchers working in this field when it comes to designing and developing new POCs with desired functions.
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Affiliation(s)
- Xinchun Yang
- Faculty of Materials Science and Energy Engineering/Institute of Technology for Carbon Neutrality, Shenzhen Institute of Advanced Technology (SIAT), Chinese Academy of Sciences (CAS), Shenzhen 518055, China
- Shenzhen Key Laboratory of Energy Materials for Carbon Neutrality, Shenzhen Institute of Advanced Technology (SIAT), Chinese Academy of Sciences (CAS), Shenzhen 518055, China
| | - Zakir Ullah
- Convergence Research Center for Insect Vectors, Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University, Incheon 22012, South Korea
| | - J Fraser Stoddart
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- School of Chemistry, University of New South Wales, Sydney, New South Wales 2052, Australia
- Stoddart Institute of Molecular Science, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou 311215, China
| | - Cafer T Yavuz
- Oxide & Organic Nanomaterials for Energy & Environment Laboratory, Physical Science & Engineering (PSE), King Abdullah University of Science and Technology (KAUST), 4700 KAUST, Thuwal 23955, Saudi Arabia
- Advanced Membranes & Porous Materials Center, PSE, KAUST, 4700 KAUST, Thuwal 23955, Saudi Arabia
- KAUST Catalysis Center, PSE, KAUST, 4700 KAUST, Thuwal 23955, Saudi Arabia
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11
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Erichsen A, Peters GHJ, Beeren SR. Templated Enzymatic Synthesis of δ-Cyclodextrin. J Am Chem Soc 2023; 145:4882-4891. [PMID: 36802551 DOI: 10.1021/jacs.3c00341] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Abstract
While α-, β-, and γ-cyclodextrin (CD) are ubiquitous hosts employed by supramolecular chemists, δ-CD (formed from nine α-1,4-linked glucopyranose units) has received very little attention. α-, β-, and γ-CD are the major products of the enzymatic breakdown of starch by cyclodextrin glucanotransferase (CGTase), but δ-CD forms only transiently in this reaction, as a minor component of a complex mixture of linear and cyclic glucans. In this work, we show how δ-CD can be synthesized in unprecedented yields by employing a bolaamphiphile template in an enzyme-mediated dynamic combinatorial library of cyclodextrins. NMR spectroscopy studies revealed that δ-CD can thread up to three bolaamphiphiles forming [2]-, [3]-, or [4]-pseudorotaxanes, depending on the size of the hydrophilic headgroup and the length of the alkyl chain axle. Threading of the first bolaamphiphile occurs in fast exchange on the NMR chemical shift time scale, while subsequent threading occurs in slow exchange. To extract quantitative information for 1:2 and 1:3 binding events occurring in mixed exchange regimes, we derived equations for nonlinear curve fitting that take into consideration both the chemical shift changes for species in fast exchange and the integrals for species in slow exchange to determine Ka1, Ka2, and Ka3. Template T1 could be used to direct the enzymatic synthesis of δ-CD due to the cooperative formation of a 1:2 complex─the [3]-pseudorotaxane δ-CD·T12. Importantly, T1 is recyclable. It can be readily recovered from the enzymatic reaction by precipitation and reused in subsequent syntheses enabling preparative-scale synthesis of δ-CD.
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Affiliation(s)
- Andreas Erichsen
- Department of Chemistry, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Günther H J Peters
- Department of Chemistry, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Sophie R Beeren
- Department of Chemistry, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
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12
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Jin Y, Mandal PK, Wu J, Böcher N, Huc I, Otto S. (Re-)Directing Oligomerization of a Single Building Block into Two Specific Dynamic Covalent Foldamers through pH. J Am Chem Soc 2023; 145:2822-2829. [PMID: 36705469 PMCID: PMC9912251 DOI: 10.1021/jacs.2c09325] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Dynamic foldamers are synthetic folded molecules which can change their conformation in response to an external stimulus and are currently at the forefront of foldamer chemistry. However, constitutionally dynamic foldamers, which can change not only their conformation but also their molecular constitution in response to their environment, are without precedent. We now report a size- and shape-switching small dynamic covalent foldamer network which responds to changes in pH. Specifically, acidic conditions direct the oligomerization of a dipeptide-based building block into a 16-subunit macrocycle with well-defined conformation and with high selectivity. At higher pH the same building block yields another cyclic foldamer with a smaller ring size (9mer). The two foldamers readily and repeatedly interconvert upon adjustment of the pH of the solution. We have previously shown that addition of a template can direct oligomerization of the same building block to yet other rings sizes (including a 12mer and a 13mer, accompanied by a minor amount of 14mer). This brings the total number of discrete foldamers that can be accessed from a single building block to five. For a single building block system to exhibit such highly diverse structure space is unique and sets this system of foldamers apart from proteins. Furthermore, the emergence of constitutional dynamicity opens up new avenues to foldamers with adaptive behavior.
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Affiliation(s)
- Yulong Jin
- Beijing
National Laboratory for Molecular Sciences, CAS Key Laboratory of
Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, 100190 Beijing, China,Centre
for Systems Chemistry, Stratingh Institute, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Pradeep K. Mandal
- Department
of Pharmacy and Center for Integrated Protein Science, Ludwig-Maximilians Universität, 81377 Munich, Germany
| | - Juntian Wu
- Centre
for Systems Chemistry, Stratingh Institute, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Niklas Böcher
- Department
of Pharmacy and Center for Integrated Protein Science, Ludwig-Maximilians Universität, 81377 Munich, Germany
| | - Ivan Huc
- Department
of Pharmacy and Center for Integrated Protein Science, Ludwig-Maximilians Universität, 81377 Munich, Germany,
| | - Sijbren Otto
- Centre
for Systems Chemistry, Stratingh Institute, Nijenborgh 4, 9747 AG Groningen, The Netherlands,
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13
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Chen X, Chen H, Fraser Stoddart J. The Story of the Little Blue Box: A Tribute to Siegfried Hünig. Angew Chem Int Ed Engl 2023; 62:e202211387. [PMID: 36131604 PMCID: PMC10099103 DOI: 10.1002/anie.202211387] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Indexed: 02/02/2023]
Abstract
The tetracationic cyclophane, cyclobis(paraquat-p-phenylene), also known as the little blue box, constitutes a modular receptor that has facilitated the discovery of many host-guest complexes and mechanically interlocked molecules during the past 35 years. Its versatility in binding small π-donors in its tetracationic state, as well as forming trisradical tricationic complexes with viologen radical cations in its doubly reduced bisradical dicationic state, renders it valuable for the construction of various stimuli-responsive materials. Since the first reports in 1988, the little blue box has been featured in over 500 publications in the literature. All this research activity would not have been possible without the seminal contributions carried out by Siegfried Hünig, who not only pioneered the syntheses of viologen-containing cyclophanes, but also revealed their rich redox chemistry in addition to their ability to undergo intramolecular π-dimerization. This Review describes how his pioneering research led to the design and synthesis of the little blue box, and how this redox-active host evolved into the key component of molecular shuttles, switches, and machines.
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Affiliation(s)
- Xiao‐Yang Chen
- Department of ChemistryNorthwestern University2145 Sheridan RoadEvanstonIllinois 60208USA
| | - Hongliang Chen
- Stoddart Institute of Molecular ScienceDepartment of ChemistryZhejiang UniversityHangzhou310027China
- ZJU-Hangzhou Global Scientific and Technological Innovation CenterHangzhou311215China
| | - J. Fraser Stoddart
- Department of ChemistryNorthwestern University2145 Sheridan RoadEvanstonIllinois 60208USA
- Stoddart Institute of Molecular ScienceDepartment of ChemistryZhejiang UniversityHangzhou310027China
- ZJU-Hangzhou Global Scientific and Technological Innovation CenterHangzhou311215China
- School of ChemistryUniversity of New South WalesSydneyNSW 2052Australia
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14
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15
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Zhang ZH, Zhou Q, Li Z, Zhang N, Zhang L. Completely stereospecific synthesis of a molecular cinquefoil (51) knot. Chem 2022. [DOI: 10.1016/j.chempr.2022.11.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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16
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Strain imposed by knotting. Chem 2022. [DOI: 10.1016/j.chempr.2022.10.025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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17
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Walker CC, Fobe TL, Shirts MR. How Cooperatively Folding Are Homopolymer Molecular Knots? Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c00881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Christopher C. Walker
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80303 United States
| | - Theodore L. Fobe
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80303 United States
| | - Michael R. Shirts
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80303 United States
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18
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Ashbridge Z, Fielden SDP, Leigh DA, Pirvu L, Schaufelberger F, Zhang L. Knotting matters: orderly molecular entanglements. Chem Soc Rev 2022; 51:7779-7809. [PMID: 35979715 PMCID: PMC9486172 DOI: 10.1039/d2cs00323f] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2022] [Indexed: 11/29/2022]
Abstract
Entangling strands in a well-ordered manner can produce useful effects, from shoelaces and fishing nets to brown paper packages tied up with strings. At the nanoscale, non-crystalline polymer chains of sufficient length and flexibility randomly form tangled mixtures containing open knots of different sizes, shapes and complexity. However, discrete molecular knots of precise topology can also be obtained by controlling the number, sequence and stereochemistry of strand crossings: orderly molecular entanglements. During the last decade, substantial progress in the nascent field of molecular nanotopology has been made, with general synthetic strategies and new knotting motifs introduced, along with insights into the properties and functions of ordered tangle sequences. Conformational restrictions imparted by knotting can induce allostery, strong and selective anion binding, catalytic activity, lead to effective chiral expression across length scales, binding modes in conformations efficacious for drug delivery, and facilitate mechanical function at the molecular level. As complex molecular topologies become increasingly synthetically accessible they have the potential to play a significant role in molecular and materials design strategies. We highlight particular examples of molecular knots to illustrate why these are a few of our favourite things.
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Affiliation(s)
- Zoe Ashbridge
- Department of Chemistry, The University of Manchester, Manchester, UK
| | | | - David A Leigh
- Department of Chemistry, The University of Manchester, Manchester, UK
- School of Chemistry and Molecular Engineering, East China Normal University, 3663 N Zhongshan Road, Shanghai, China
| | - Lucian Pirvu
- Department of Chemistry, The University of Manchester, Manchester, UK
| | | | - Liang Zhang
- Department of Chemistry, The University of Manchester, Manchester, UK
- School of Chemistry and Molecular Engineering, East China Normal University, 3663 N Zhongshan Road, Shanghai, China
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19
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Ashbridge Z, Knapp OM, Kreidt E, Leigh DA, Pirvu L, Schaufelberger F. Social Self-Sorting Synthesis of Molecular Knots. J Am Chem Soc 2022; 144:17232-17240. [PMID: 36067448 PMCID: PMC9501921 DOI: 10.1021/jacs.2c07682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
We report the synthesis of molecular prime and composite
knots
by social self-sorting of 2,6-pyridinedicarboxamide (pdc) ligands
of differing topicity and stereochemistry. Upon mixing achiral monotopic
and ditopic pdc-ligand strands in a 1:1:1 ratio with Lu(III), a well-defined
heteromeric complex featuring one of each ligand strand and the metal
ion is selectively formed. Introducing point-chiral centers into the
ligands leads to single-sense helical stereochemistry of the resulting
coordination complex. Covalent capture of the entangled structure
by ring-closing olefin metathesis then gives a socially self-sorted
trefoil knot of single topological handedness. In a related manner,
a heteromeric molecular granny knot (a six-crossing composite knot
featuring two trefoil tangles of the same handedness) was assembled
from social self-sorting of ditopic and tetratopic multi-pdc strands.
A molecular square knot (a six-crossing composite knot of two trefoil
tangles of opposite handedness) was assembled by social self-sorting
of a ditopic pdc strand with four (S)-centers and
a tetratopic strand with two (S)- and six (R)-centers. Each of the entangled structures was characterized
by 1H and 13C NMR spectroscopy, mass spectrometry,
and circular dichroism spectroscopy. The precise control of composition
and topological chirality through social self-sorting enables the
rapid assembly of well-defined sequences of entanglements for molecular
knots.
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Affiliation(s)
- Zoe Ashbridge
- Department of Chemistry, University of Manchester, Manchester M13 9PL, U.K
| | - Olivia M Knapp
- Department of Chemistry, University of Manchester, Manchester M13 9PL, U.K
| | - Elisabeth Kreidt
- Department of Chemistry, University of Manchester, Manchester M13 9PL, U.K
| | - David A Leigh
- Department of Chemistry, University of Manchester, Manchester M13 9PL, U.K.,School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Lucian Pirvu
- Department of Chemistry, University of Manchester, Manchester M13 9PL, U.K
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20
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Luo J, Guo Y, Li P, Sue ACH, Cheng C. Dynamic combinatorial libraries of a dimercapto-pillar[5]arene. Chem Commun (Camb) 2022; 58:8646-8649. [PMID: 35822240 DOI: 10.1039/d2cc02752f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report the synthesis and dynamic covalent chemistry (DCvC) of an A1/A2-dimercapto-functionalized pillar[5]arene (Di-SH-P5). The introduction of thiol moieties into this macrocyclic host makes it an effective building block for making a dynamic combinatorial library (DCL), giving rise to a set of cyclic trimers with intriguing host-guest properties as the dominant constituents.
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Affiliation(s)
- Jinwen Luo
- College of Chemistry, Sichuan University, Chengdu, 610064, China.
| | - Yunlong Guo
- College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
| | - Ping Li
- College of Chemistry, Sichuan University, Chengdu, 610064, China.
| | - Andrew C-H Sue
- College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
| | - Chuyang Cheng
- College of Chemistry, Sichuan University, Chengdu, 610064, China.
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21
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Orrillo AG, Furlan RLE. Sulfur in Dynamic Covalent Chemistry. Angew Chem Int Ed Engl 2022; 61:e202201168. [PMID: 35447003 DOI: 10.1002/anie.202201168] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Indexed: 12/21/2022]
Abstract
Sulfur has been important in dynamic covalent chemistry (DCC) since the beginning of the field. Mainly as part of disulfides and thioesters, dynamic sulfur-based bonds (DSBs) have a leading role in several remarkable reactions. Part of this success is due to the almost ideal properties of DSBs for the preparation of dynamic covalent systems, including high reactivity and good reversibility under mild aqueous conditions, the possibility of exploiting supramolecular interactions, access to isolable structures, and easy experimental control to turn the reaction on/off. DCC is currently witnessing an increase in the importance of DSBs. The chemical flexibility offered by DSBs opens the door to multiple applications. This Review presents an overview of all the DSBs used in DCC, their applications, and remarks on the interesting properties that they confer on dynamic chemical systems, especially those containing several DSBs.
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Affiliation(s)
- A Gastón Orrillo
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, CONICET, Suipacha 531, Rosario, S2002LRK, Argentina
| | - Ricardo L E Furlan
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, CONICET, Suipacha 531, Rosario, S2002LRK, Argentina
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22
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Lei Y, Li Z, Wu G, Zhang L, Tong L, Tong T, Chen Q, Wang L, Ge C, Wei Y, Pan Y, Sue ACH, Wang L, Huang F, Li H. A trefoil knot self-templated through imination in water. Nat Commun 2022; 13:3557. [PMID: 35729153 PMCID: PMC9213439 DOI: 10.1038/s41467-022-31289-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Accepted: 06/03/2022] [Indexed: 11/24/2022] Open
Abstract
The preparation of topologically nontrivial molecules is often assisted by covalent, supramolecular or coordinative templates that provide spatial pre-organization for all components. Herein, we report a trefoil knot that can be self-assembled efficiently in water without involving additional templates. The direct condensation of three equivalents of a tetraformyl precursor and six equivalents of a chiral diamine produces successfully a [3 + 6] trefoil knot whose intrinsic handedness is dictated by the stereochemical configuration of the diamine linkers. Contrary to the conventional wisdom that imine condensation is not amenable to use in water, the multivalent cooperativity between all the imine bonds within the framework makes this trefoil knot robust in the aqueous environment. Furthermore, the presence of water is proven to be essential for the trefoil knot formation. A topologically trivial macrocycle composed of two tetraformyl and four diamino building blocks is obtained when a similar reaction is performed in organic media, indicating that hydrophobic effect is a major driving force behind the scene.
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Affiliation(s)
- Ye Lei
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China
| | - Zhaoyong Li
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China
- Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310027, PR China
| | - Guangcheng Wu
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China
| | - Lijie Zhang
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, Hangzhou, 311231, PR China
| | - Lu Tong
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China
| | - Tianyi Tong
- College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China
| | - Qiong Chen
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China
| | - Lingxiang Wang
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China
| | - Chenqi Ge
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China
| | - Yuxi Wei
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China
| | - Yuanjiang Pan
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China
| | - Andrew C-H Sue
- College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China.
| | - Linjun Wang
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China.
- Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310027, PR China.
| | - Feihe Huang
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China.
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 310027, PR China.
| | - Hao Li
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, PR China.
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 310027, PR China.
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23
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Nosiglia MA, Colley ND, Danielson MK, Palmquist MS, Delawder AO, Tran SL, Harlan GH, Barnes JC. Metalation/Demetalation as a Postgelation Strategy To Tune the Mechanical Properties of Catenane-Crosslinked Gels. J Am Chem Soc 2022; 144:9990-9996. [PMID: 35617307 DOI: 10.1021/jacs.2c03166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Mechanically interlocked molecules (MIMs) possess unique architectures and nontraditional degrees of freedom that arise from well-defined topologies that are achieved through precise mechanical bonding. Incorporation of MIMs into materials can thus provide an avenue to discover new and emergent macroscale properties. Here, the synthesis of a phenanthroline-based [2]catenane crosslinker and its incorporation into polyacrylate organogels are described. Specifically, Cu(I) metalation and demetalation was used as a postgelation strategy to tune the mechanical properties of a gel by controlling the conformational motions of integrated MIMs. The organogels were prepared via thermally initiated free radical polymerization, and Cu(I) metal was added in MeOH to the pretreated, swollen gels. Demetalation of the gels was achieved by adding lithium cyanide and washing the gels. Changes in Young's and shear moduli, as well as tensile strength, were quantified through oscillatory shear rheology and tensile testing. The reported approach provides a general method for postgelation tuning of mechanical properties using metals and well-defined catenane topologies as part of a gel network architecture.
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Affiliation(s)
- Mark A Nosiglia
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Nathan D Colley
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Mary K Danielson
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Mark S Palmquist
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Abigail O Delawder
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Sheila L Tran
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Gray H Harlan
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Jonathan C Barnes
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
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24
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Xu GT, Chang XY, Low KH, Wu LL, Wan Q, Shu HX, To WP, Huang JS, Che CM. Self-Assembly of Molecular Trefoil Knots Featuring Pentadecanuclear Homoleptic Au I -, Au I /Ag I -, or Au I /Cu I -Alkynyl Coordination. Angew Chem Int Ed Engl 2022; 61:e202200748. [PMID: 35183066 DOI: 10.1002/anie.202200748] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Indexed: 12/17/2022]
Abstract
Metal-free and metal-containing molecular trefoil knots are fascinating ensembles that are usually covalently assembled, the latter requiring the rational design of di- or multidentate/multipodal ligands as connectors. In this work, we describe the self-assembly of pentadecanuclear AuI trefoil knots [Au15 (C≡CR)15 ] from monoalkynes HC≡CR (R=9,9-X2 -fluorenyl with X=nBu, n-hexyl) and [AuI (THT)Cl]. Hetero-bimetallic counterparts [Au9 M6 (C≡CR)15 ] (M=Cu/Ag) were self-assembled by reactions of [Au15 (C≡CR)15 ] with [Cu(MeCN)4 ]+ /AgNO3 and HC≡CR. The type of pentadecanuclear trefoil knots described herein is characterized by X-ray crystallography, 2D NMR and HR-ESI-MS. [Au9 Cu6 (C≡CR)15 ] is relatively stable in hexane; its excited state properties were investigated. DFT calculations revealed that non-covalent metal-metal and metal-ligand interactions, together with longer alkyl chain-strengthened inter-ligand dispersion interactions, govern the stability of the trefoil knot structures.
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Affiliation(s)
- Guang-Tao Xu
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Xiao-Yong Chang
- Department of Chemistry, Southern University of Science and Technology, Shenzhen, China
| | - Kam-Hung Low
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Liang-Liang Wu
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Qingyun Wan
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Hui-Xing Shu
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Wai-Pong To
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Jie-Sheng Huang
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Chi-Ming Che
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
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25
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High capacity topological coding based on nested vortex knots and links. Nat Commun 2022; 13:2705. [PMID: 35577793 PMCID: PMC9110754 DOI: 10.1038/s41467-022-30381-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 04/27/2022] [Indexed: 11/13/2022] Open
Abstract
Optical knots and links have attracted great attention because of their exotic topological characteristics. Recent investigations have shown that the information encoding based on optical knots could possess robust features against external perturbations. However, as a superior coding scheme, it is also necessary to achieve a high capacity, which is hard to be fulfilled by existing knot-carriers owing to the limit number of associated topological invariants. Thus, how to realize the knot-based information coding with a high capacity is a key problem to be solved. Here, we create a type of nested vortex knot, and show that it can be used to fulfill the robust information coding with a high capacity assisted by a large number of intrinsic topological invariants. In experiments, we design and fabricate metasurface holograms to generate light fields sustaining different kinds of nested vortex links. Furthermore, we verify the feasibility of the high-capacity coding scheme based on those topological optical knots. Our work opens another way to realize the robust and high-capacity optical coding, which may have useful impacts on the field of information transfer and storage. Robust and high capacity optical coding will be at the base of future developments of information transfer and storage. Here the authors develop a topological all-optical coding scheme, which possesses good stability and a high capacity, using nested vortex knots and links.
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26
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Orrillo AG, Furlan RLE. Sulfur in Dynamic Covalent Chemistry. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202201168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Alfredo Gastón Orrillo
- Universidad Nacional de Rosario Facultad de Ciencias Bioquimicas y Farmaceuticas Organic Chemistry Suipacha 530 2000 Rosario ARGENTINA
| | - Ricardo L. E. Furlan
- Universidad Nacional de Rosario Facultad de Ciencias Bioquimicas y Farmaceuticas Organic Chemistry Suipacha 530 2000 Rosario ARGENTINA
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27
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Han Y, Liu C, Xu H, Cao Y. Engineering reversible hydrogels for
3D
cell culture and release using diselenide catalyzed fast disulfide formation. CHINESE J CHEM 2022. [DOI: 10.1002/cjoc.202200099] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Yueying Han
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Key Laboratory of Intelligent Optical Sensing and Manipulation, Ministry of Education, Department of Physics Nanjing University Nanjing Jiangsu 210093 China
- Jinan Microecological Biomedicine Shandong Laboratory Jinan Shandong 250021 China
| | - Cheng Liu
- Key Lab of Organic Optoelectronics and Molecular Engineering, Department of Chemistry Tsinghua University Beijing 100084 China
| | - Huaping Xu
- Key Lab of Organic Optoelectronics and Molecular Engineering, Department of Chemistry Tsinghua University Beijing 100084 China
| | - Yi Cao
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Key Laboratory of Intelligent Optical Sensing and Manipulation, Ministry of Education, Department of Physics Nanjing University Nanjing Jiangsu 210093 China
- Jinan Microecological Biomedicine Shandong Laboratory Jinan Shandong 250021 China
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28
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Ashbridge Z, Kreidt E, Pirvu L, Schaufelberger F, Stenlid JH, Abild-Pedersen F, Leigh DA. Vernier template synthesis of molecular knots. Science 2022; 375:1035-1041. [PMID: 35239374 DOI: 10.1126/science.abm9247] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Molecular knots are often prepared using metal helicates to cross the strands. We found that coordinatively mismatching oligodentate ligands and metal ions provides a more effective way to synthesize larger knots using Vernier templating. Strands composed of different numbers of tridentate 2,6-pyridinedicarboxamide groups fold around nine-coordinate lanthanide (III) ions to generate strand-entangled complexes with the lowest common multiple of coordination sites for the ligand strands and metal ions. Ring-closing olefin metathesis then completes the knots. A 3:2 (ditopic strand:metal) Vernier assembly produces +31#+31 and -31#-31 granny knots. Vernier complexes of 3:4 (tetratopic strand:metal) stoichiometry selectively form a 378-atom-long trefoil-of-trefoils triskelion knot with 12 alternating strand crossings or, by using opposing stereochemistry at the terminus of the strand, an inverted-core triskelion knot with six alternating and six nonalternating strand crossings.
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Affiliation(s)
- Zoe Ashbridge
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | - Elisabeth Kreidt
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | - Lucian Pirvu
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | | | - Joakim Halldin Stenlid
- SUNCAT Center for Interface Science and Catalysis, Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA.,SUNCAT Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - Frank Abild-Pedersen
- SUNCAT Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - David A Leigh
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK.,School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
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29
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Zhang ZH, Andreassen BJ, August DP, Leigh DA, Zhang L. Molecular weaving. NATURE MATERIALS 2022; 21:275-283. [PMID: 35115722 DOI: 10.1038/s41563-021-01179-w] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 11/22/2021] [Indexed: 06/14/2023]
Abstract
Historically, the interlacing of strands at the molecular level has mainly been limited to coordination polymers and DNA. Despite being proposed on a number of occasions, the direct, bottom-up assembly of molecular building blocks into woven organic polymers remained an aspirational, but elusive, target for several decades. However, recent successes in two-dimensional and three-dimensional molecular-level weaving now offer new opportunities and research directions at the interface of polymer science and molecular nanotopology. This Perspective provides an overview of the features and potential of the periodic nanoscale weaving of polymer chains, distinguishing it from randomly entangled polymer networks and rigid crystalline frameworks. We review the background and experimental progress so far, and conclude by considering the potential of molecular weaving and outline some of the current and future challenges in this emerging field.
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Affiliation(s)
- Zhi-Hui Zhang
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China
| | | | - David P August
- Department of Chemistry, University of Manchester, Manchester, UK
| | - David A Leigh
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China.
- Department of Chemistry, University of Manchester, Manchester, UK.
| | - Liang Zhang
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China.
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30
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Xu GT, Chang XY, Low KH, Wu LL, Wan Q, Shu HX, To WP, Huang JS, Che CM. Self‐Assembly of Molecular Trefoil Knots Featuring Pentadecanuclear Homoleptic AuI‐, AuI/AgI‐, or AuI/CuI‐Alkynyl Coordination. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202200748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
| | - Xiao-Yong Chang
- Southern University of Science and Technology Chemistry CHINA
| | | | | | - Qingyun Wan
- The University of Hong Kong Chemistry HONG KONG
| | | | - Wai-Pong To
- The University of Hong Kong Chemistry HONG KONG
| | | | - Chi-Ming Che
- The University of Hong Kong Pokfulam Road - Hong Kong HONG KONG
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31
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Vial L, Perret F, Leclaire J. Dyn[
n
]arenes: Versatile Platforms To Study the Interplay between Covalent and Noncovalent Bonds. European J Org Chem 2022. [DOI: 10.1002/ejoc.202101274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Laurent Vial
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires UMR 5246 CNRS Univ. Lyon Université Lyon 1 CPE INSA 43 Boulevard du 11 Novembre 1918 69622 Villeurbanne France
| | - Florent Perret
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires UMR 5246 CNRS Univ. Lyon Université Lyon 1 CPE INSA 43 Boulevard du 11 Novembre 1918 69622 Villeurbanne France
| | - Julien Leclaire
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires UMR 5246 CNRS Univ. Lyon Université Lyon 1 CPE INSA 43 Boulevard du 11 Novembre 1918 69622 Villeurbanne France
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32
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Konopka M, Stefankiewicz AR. Expanding structural diversity in a library of disulfide macrocycles through in-situ imide hydrolysis. Sci Rep 2022; 12:38. [PMID: 34997018 PMCID: PMC8742088 DOI: 10.1038/s41598-021-03944-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 12/13/2021] [Indexed: 02/05/2023] Open
Abstract
We describe here an unorthodox approach to dynamic covalent chemistry in which the initially-unexpected in-situ hydrolysis of a bis-imide is employed to control the composition of a library of structurally diverse macrocycles. A single building block is used to generate a library of numerous disulfide-based architectures in a one-pot single-step process. The dual-stimuli method is based on simultaneous changes in pH and DMSO concentration to expand the structural diversity of the macrocyclic products. Mechanistic details of this complex process are investigated by the kinetics analysis. We delivered a facile strategy for the synthesis of water-soluble, multicomponent and dynamic macrocycles equipped with number of different functional groups, thus giving a prospect of their application in guest-driven phase transfer.
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Affiliation(s)
- Marcin Konopka
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, 61-614, Poznań, Poland
- Center for Advanced Technology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 10, 61-614, Poznań, Poland
| | - Artur R Stefankiewicz
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, 61-614, Poznań, Poland.
- Center for Advanced Technology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 10, 61-614, Poznań, Poland.
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33
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Ng AWH, Lai SK, Yee C, Au‐Yeung HY. Macrocycle Dynamics in a Branched [8]Catenane Controlled by Three Different Stimuli in Three Different Regions. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202110200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Antony Wing Hung Ng
- State Key Laboratory of Synthetic Chemistry CAS-HKU Joint Laboratory of Metallomics on Health and Environment and Department of Chemistry The University of Hong Kong Pokfulam Road Hong Kong P. R. China
| | - Samuel Kin‐Man Lai
- State Key Laboratory of Synthetic Chemistry CAS-HKU Joint Laboratory of Metallomics on Health and Environment and Department of Chemistry The University of Hong Kong Pokfulam Road Hong Kong P. R. China
| | - Chi‐Chung Yee
- State Key Laboratory of Synthetic Chemistry CAS-HKU Joint Laboratory of Metallomics on Health and Environment and Department of Chemistry The University of Hong Kong Pokfulam Road Hong Kong P. R. China
| | - Ho Yu Au‐Yeung
- State Key Laboratory of Synthetic Chemistry CAS-HKU Joint Laboratory of Metallomics on Health and Environment and Department of Chemistry The University of Hong Kong Pokfulam Road Hong Kong P. R. China
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34
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Zhu J, Avakyan N, Kakkis AA, Hoffnagle AM, Han K, Li Y, Zhang Z, Choi TS, Na Y, Yu CJ, Tezcan FA. Protein Assembly by Design. Chem Rev 2021; 121:13701-13796. [PMID: 34405992 PMCID: PMC9148388 DOI: 10.1021/acs.chemrev.1c00308] [Citation(s) in RCA: 107] [Impact Index Per Article: 35.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Proteins are nature's primary building blocks for the construction of sophisticated molecular machines and dynamic materials, ranging from protein complexes such as photosystem II and nitrogenase that drive biogeochemical cycles to cytoskeletal assemblies and muscle fibers for motion. Such natural systems have inspired extensive efforts in the rational design of artificial protein assemblies in the last two decades. As molecular building blocks, proteins are highly complex, in terms of both their three-dimensional structures and chemical compositions. To enable control over the self-assembly of such complex molecules, scientists have devised many creative strategies by combining tools and principles of experimental and computational biophysics, supramolecular chemistry, inorganic chemistry, materials science, and polymer chemistry, among others. Owing to these innovative strategies, what started as a purely structure-building exercise two decades ago has, in short order, led to artificial protein assemblies with unprecedented structures and functions and protein-based materials with unusual properties. Our goal in this review is to give an overview of this exciting and highly interdisciplinary area of research, first outlining the design strategies and tools that have been devised for controlling protein self-assembly, then describing the diverse structures of artificial protein assemblies, and finally highlighting the emergent properties and functions of these assemblies.
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Affiliation(s)
| | | | - Albert A. Kakkis
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Alexander M. Hoffnagle
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Kenneth Han
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Yiying Li
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Zhiyin Zhang
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Tae Su Choi
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Youjeong Na
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Chung-Jui Yu
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - F. Akif Tezcan
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
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35
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Tateishi T, Takahashi S, Kikuchi I, Aratsu K, Sato H, Hiraoka S. Unexpected Self-Assembly Pathway to a Pd(II) Coordination Square-Based Pyramid and Its Preferential Formation beyond the Boltzmann Distribution. Inorg Chem 2021; 60:16678-16685. [PMID: 34652136 DOI: 10.1021/acs.inorgchem.1c02570] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Experimental and theoretical investigations of the self-assembly process of a Pd(II) coordination M6L4 square-based pyramid (SP) were conducted. It was found that the probable self-assembly pathway, in which the dimerization of M2L2 with two M leads to SP, expected from the connectivity of the building blocks is not a major self-assembly pathway to the M6L4 SP. Whether the M6L4 SP is assembled or M2L2 is trapped is determined by an inter- or intramolecular reaction in a chain-like M2L2X, where X is a leaving ligand. The kinetically trapped state where the M6L4 SP is produced from M2L2 beyond the Boltzmann distribution was realized by a concentration-induced process and was kept for at least 2 months at 298 K.
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Affiliation(s)
- Tomoki Tateishi
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Satoshi Takahashi
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Isamu Kikuchi
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Keisuke Aratsu
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Hirofumi Sato
- Department of Molecular Engineering, Kyoto University, Kyoto 615-8510, Japan.,Elements Strategy Initiative for Catalysts and Batteries, Kyoto University, Kyoto 615-8510, Japan.,Fukui Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8103, Japan
| | - Shuichi Hiraoka
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
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36
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Ng AWH, Lai SKM, Yee CC, Au-Yeung HY. Macrocycle Dynamics in a Branched [8]Catenane Controlled by Three Different Stimuli in Three Different Regions. Angew Chem Int Ed Engl 2021; 61:e202110200. [PMID: 34676960 DOI: 10.1002/anie.202110200] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Indexed: 12/14/2022]
Abstract
A branched [8]catenane from an efficient one-pot synthesis (72 % HPLC yield, 59 % isolated yield) featuring the simultaneous use of three kinds of templates and cucurbit[6]uril-mediated azide-alkyne cycloaddition (CBAAC) for ring-closing is reported. Design and assembly of the [8]catenane precursors are unexpectedly complex that can involve cooperating, competing and non-influencing interactions. Due to the branched structure, dynamics of the [8]catenane can be modulated in different extent by rigidifying/loosening the mechanical bonds at different regions by using solvent polarity, acid-base and metal ions as the stimuli. This work not only highlights the importance of understanding the delicate interplay of the weak and non-obvious supramolecular interactions in the synthesis of high-order [n]catenane, but also demonstrates a complex control of dynamics and flexibility for exploiting [n]catenanes applications.
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Affiliation(s)
- Antony Wing Hung Ng
- State Key Laboratory of Synthetic Chemistry, CAS-HKU Joint Laboratory of Metallomics on Health and Environment and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China
| | - Samuel Kin-Man Lai
- State Key Laboratory of Synthetic Chemistry, CAS-HKU Joint Laboratory of Metallomics on Health and Environment and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China
| | - Chi-Chung Yee
- State Key Laboratory of Synthetic Chemistry, CAS-HKU Joint Laboratory of Metallomics on Health and Environment and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China
| | - Ho Yu Au-Yeung
- State Key Laboratory of Synthetic Chemistry, CAS-HKU Joint Laboratory of Metallomics on Health and Environment and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China
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37
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Affiliation(s)
- Arthur H. G. David
- Department of Chemistry Northwestern University Evanston Illinois 60208 United States
| | - J. Fraser Stoddart
- Department of Chemistry Northwestern University Evanston Illinois 60208 United States
- School of Chemistry University of New South Wales Sydney NSW 2052 Australia
- Stoddart Institute of Molecular Science Department of Chemistry Zhejiang University Hangzhou 310021 China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center Hangzhou 311215 China
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38
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Schröder HV, Zhang Y, Link AJ. Dynamic covalent self-assembly of mechanically interlocked molecules solely made from peptides. Nat Chem 2021; 13:850-857. [PMID: 34426684 PMCID: PMC8446321 DOI: 10.1038/s41557-021-00770-7] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Accepted: 07/12/2021] [Indexed: 11/09/2022]
Abstract
Mechanically interlocked molecules (MIMs), such as rotaxanes and catenanes, have captured the attention of chemists both from a synthetic perspective and because of their role as simple prototypes of molecular machines. Although examples exist in nature, most synthetic MIMs are made from artificial building blocks and assembled in organic solvents. Synthesis of MIMs from natural biomolecules remains highly challenging. Here we report on a synthesis strategy for interlocked molecules solely made from peptides—mechanically interlocked peptides (MIPs). Fully peptidic, cysteine-decorated building blocks were self-assembled in water to generate disulfide-bonded dynamic combinatorial libraries consisting of multiple different rotaxanes, catenanes and daisy chains as well as more exotic structures. Detailed NMR spectroscopy and mass spectrometry characterization of a [2]catenane comprised of two peptide macrocycles revealed that this structure has rich conformational dynamics reminiscent of protein folding. Thus, MIPs can serve as a bridge between fully synthetic MIMs and those found in nature.
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Affiliation(s)
- Hendrik V Schröder
- Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA
| | - Yi Zhang
- Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA
| | - A James Link
- Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA. .,Department of Chemistry, Princeton University, Princeton, NJ, USA. .,Department of Molecular Biology, Princeton University, Princeton, NJ, USA.
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39
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Erichsen A, Larsen D, Beeren SR. Chaotropic and Kosmotropic Anions Regulate the Outcome of Enzyme-Mediated Dynamic Combinatorial Libraries of Cyclodextrins in Two Different Ways. Front Chem 2021; 9:721942. [PMID: 34414164 PMCID: PMC8370642 DOI: 10.3389/fchem.2021.721942] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 07/12/2021] [Indexed: 11/22/2022] Open
Abstract
We demonstrate how different anions from across the Hofmeister series can influence the behavior of enzyme-mediated dynamic combinatorial libraries of cyclodextrins (CDs). Using cyclodextrin glucanotransferase to catalyze reversible transglycosylation, dynamic mixtures of interconverting cyclodextrins can be formed wherein the relative concentrations of α-CD, β-CD and γ-CD is determined by their intrinsic stabilities and any stabilizing influences of added template (guest) molecules. Here, we find that addition of high concentrations of kosmotropic anions can be used to enhance the effects of added hydrophobic templates, while chaotropic anions can themselves act as templates, causing predictable and significant changes in the cyclodextrin composition due to weak, but specific, binding interactions with α-CD.
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Affiliation(s)
- Andreas Erichsen
- Department of Chemistry, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Dennis Larsen
- Department of Chemistry, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Sophie R Beeren
- Department of Chemistry, Technical University of Denmark, Kongens Lyngby, Denmark
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40
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Jin J, Miao J, Cheng C. Mono-mercapto-functionalized pillar[5]arene: a host-guest complexation accelerated reversible redox dimerization. Chem Commun (Camb) 2021; 57:7950-7953. [PMID: 34286743 DOI: 10.1039/d1cc03010h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
A mono-mercapto-functionalized pillar[5]arene and its dimer, capable of being reversibly interconverted, were successfully synthesized. Fascinatingly, a faster reversible redox conversion involving a dynamic disulfide bond was observed between their host-guest complexes compared with the hosts themselves.
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Affiliation(s)
- Jianbing Jin
- College of Chemistry, Sichuan University, Chengdu, 610064, China.
| | - Jiarong Miao
- College of Chemistry, Sichuan University, Chengdu, 610064, China.
| | - Chuyang Cheng
- College of Chemistry, Sichuan University, Chengdu, 610064, China.
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41
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Urushibara K, Ferrand Y, Liu Z, Katagiri K, Kawahata M, Morvan E, D'Elia R, Pophristic V, Tanatani A, Huc I. Accessing Improbable Foldamer Shapes with Strained Macrocycles. Chemistry 2021; 27:11205-11215. [PMID: 33905165 PMCID: PMC8453500 DOI: 10.1002/chem.202101201] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2021] [Indexed: 11/07/2022]
Abstract
The alkylation of some secondary amide functions with a dimethoxybenzyl (DMB) group in oligomers of 8-amino-2-quinolinecarboxylic acid destabilizes the otherwise favored helical conformations, and allows for cyclization to take place. A cyclic hexamer and a cyclic heptamer were produced in this manner. After DMB removal, X-ray crystallography and NMR show that the macrocycles adopt strained conformations that would be improbable in noncyclic species. The high helix folding propensity of the main chain is partly expressed in these conformations, but it remains frustrated by macrocyclization. Despite being homomeric, the macrocycles possess inequivalent monomer units. Experimental and computational studies highlight specific fluxional pathways within these structures. Extensive simulated annealing molecular dynamics allow for the prediction of the conformations for larger macrocycles with up to sixteen monomers.
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Affiliation(s)
- Ko Urushibara
- Department of ChemistryFaculty of ScienceOchanomizu University2-1-1 Otsuka, Bunkyo-kuTokyo112-8610Japan
- CBMN (UMR 5248)Université de BordeauxCNRSBordeaux Institut National Polytechnique2 rue Robert Escarpit33600PessacFrance
| | - Yann Ferrand
- CBMN (UMR 5248)Université de BordeauxCNRSBordeaux Institut National Polytechnique2 rue Robert Escarpit33600PessacFrance
| | - Zhiwei Liu
- Department of Chemistry & BiochemistryUniversity of the Sciences600 South 43rd StreetPhiladelphiaPA19104USA
| | - Kosuke Katagiri
- Department of ChemistryFaculty of Science and EngineeringKonan University8-9-1 Okamoto, Higashinada-kuKobe658-8501Japan
| | - Masatoshi Kawahata
- Faculty of Pharmaceutical SciencesShowa Pharmaceutical University3-3165 Higashi-TamagawagakuenMachidaTokyo194-8543Japan
| | - Estelle Morvan
- IECB (UMS3033/US001)Université de Bordeaux, CNRS, INSERM2 rue Robert Escarpit33600PessacFrance
| | - Ryan D'Elia
- Department of Chemistry & BiochemistryUniversity of the Sciences600 South 43rd StreetPhiladelphiaPA19104USA
| | - Vojislava Pophristic
- Department of Chemistry & BiochemistryUniversity of the Sciences600 South 43rd StreetPhiladelphiaPA19104USA
| | - Aya Tanatani
- Department of ChemistryFaculty of ScienceOchanomizu University2-1-1 Otsuka, Bunkyo-kuTokyo112-8610Japan
| | - Ivan Huc
- CBMN (UMR 5248)Université de BordeauxCNRSBordeaux Institut National Polytechnique2 rue Robert Escarpit33600PessacFrance
- Department of Pharmacy and Center for Integrated Protein ScienceLudwig-Maximilians-UniversitätButenandtstr. 5–1381377MünchenGermany
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42
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Chen Y, Wu G, Chen B, Qu H, Jiao T, Li Y, Ge C, Zhang C, Liang L, Zeng X, Cao X, Wang Q, Li H. Self‐Assembly of a Purely Covalent Cage with Homochirality by Imine Formation in Water. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202106428] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Yixin Chen
- Department of Chemistry Zhejiang University Hangzhou 310027 China
| | - Guangcheng Wu
- Department of Chemistry Zhejiang University Hangzhou 310027 China
| | - Binbin Chen
- Department of Chemistry Zhejiang University Hangzhou 310027 China
| | - Hang Qu
- State Key Laboratory of Physical Chemistry of Solid Surfaces iChEM and College of Chemistry and Chemical Engineering Xiamen University Xiamen 361005 China
| | - Tianyu Jiao
- Department of Chemistry Zhejiang University Hangzhou 310027 China
| | - Yintao Li
- Department of Chemistry Zhejiang University Hangzhou 310027 China
| | - Chenqi Ge
- Department of Chemistry Zhejiang University Hangzhou 310027 China
| | - Chi Zhang
- Department of Chemistry Zhejiang University Hangzhou 310027 China
| | - Lixin Liang
- Department of Chemistry Zhejiang University Hangzhou 310027 China
| | - Xiuqiong Zeng
- Department of Chemistry Zhejiang University Hangzhou 310027 China
| | - Xiaoyu Cao
- State Key Laboratory of Physical Chemistry of Solid Surfaces iChEM and College of Chemistry and Chemical Engineering Xiamen University Xiamen 361005 China
| | - Qi Wang
- Department of Chemistry Zhejiang University Hangzhou 310027 China
| | - Hao Li
- Department of Chemistry Zhejiang University Hangzhou 310027 China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center Hangzhou 311215 China
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Chen Y, Wu G, Chen B, Qu H, Jiao T, Li Y, Ge C, Zhang C, Liang L, Zeng X, Cao X, Wang Q, Li H. Self-Assembly of a Purely Covalent Cage with Homochirality by Imine Formation in Water. Angew Chem Int Ed Engl 2021; 60:18815-18820. [PMID: 34129262 DOI: 10.1002/anie.202106428] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 06/04/2021] [Indexed: 11/11/2022]
Abstract
Self-assembly of host molecules in aqueous media via metal-ligand coordination is well developed. However, the preparation of purely covalent counterparts in water has remained a formidable task. An anionic tetrahedron cage was successfully self-assembled in a [4+4] manner by condensing a trisamine and a trisformyl in water. Even although each individual imine bond is rather labile and apt to hydrolyze in water, the tetrahedron is remarkably stable or inert due to multivalence. The tetrahedral cages, as well as its neutral counterparts dissolved in organic solvent, have homochirality, namely that their four propeller-shaped trisformyl residues adopt the same rotational conformation. The cage is able to take advantage of hydrophobic effect to accommodate a variety of guest molecules in water. When a chiral guest was recognized, the formation of one enantiomer of the cage became more favored relative to the other. As a consequence, the cage could be produced in an enantioselective manner. The tetrahedron is able to maintain its chirality after removal of the chiral guest-probably on account of the cooperative occurrence of intramolecular forces that restrict the intramolecular flipping of phenyl units in the cage framework.
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Affiliation(s)
- Yixin Chen
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China
| | - Guangcheng Wu
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China
| | - Binbin Chen
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China
| | - Hang Qu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
| | - Tianyu Jiao
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China
| | - Yintao Li
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China
| | - Chenqi Ge
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China
| | - Chi Zhang
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China
| | - Lixin Liang
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China
| | - Xiuqiong Zeng
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China
| | - Xiaoyu Cao
- State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
| | - Qi Wang
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China
| | - Hao Li
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, China.,ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, 311215, China
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Komáromy D, Tiemersma-Wegman T, Kemmink J, Portale G, Adamski PR, Blokhuis A, Aalbers FS, Marić I, Santiago GM, Ottelé J, Sood A, Saggiomo V, Liu B, van der Meulen P, Otto S. Stoichiometry alone can steer supramolecular systems on complex free energy surfaces with high selectivity. Chem 2021. [DOI: 10.1016/j.chempr.2021.05.020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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45
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Carpenter JP, McTernan CT, Greenfield JL, Lavendomme R, Ronson TK, Nitschke JR. Controlling the shape and chirality of an eight-crossing molecular knot. Chem 2021. [DOI: 10.1016/j.chempr.2021.03.005] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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46
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Huang S, Lei Z, Jin Y, Zhang W. By-design molecular architectures via alkyne metathesis. Chem Sci 2021; 12:9591-9606. [PMID: 34349932 PMCID: PMC8293811 DOI: 10.1039/d1sc01881g] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2021] [Accepted: 05/14/2021] [Indexed: 12/26/2022] Open
Abstract
Shape-persistent purely organic molecular architectures have attracted tremendous research interest in the past few decades. Dynamic Covalent Chemistry (DCvC), which deals with reversible covalent bond formation reactions, has emerged as an efficient synthetic approach for constructing these well-defined molecular architectures. Among various dynamic linkages, the formation of ethynylene linkages through dynamic alkyne metathesis is of particular interest due to their high chemical stability, linearity, and rigidity. In this review, we focus on the synthetic strategies of discrete molecular architectures (e.g., macrocycles, molecular cages) containing ethynylene linkages using alkyne metathesis as the key step, and their applications. We will introduce the history and challenges in the synthesis of those architectures via alkyne metathesis, the development of alkyne metathesis catalysts, the reported novel macrocycle structures, molecular cage structures, and their applications. In the end, we offer an outlook of this field and remaining challenges. The recent synthesis of novel shape-persistent 2D and 3D molecular architectures via alkyne metathesis is reviewed and the critical role of catalysts is also highlighted.![]()
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Affiliation(s)
- Shaofeng Huang
- Department of Chemistry, University of Colorado Boulder 80309 USA
| | - Zepeng Lei
- Department of Chemistry, University of Colorado Boulder 80309 USA
| | - Yinghua Jin
- Department of Chemistry, University of Colorado Boulder 80309 USA
| | - Wei Zhang
- Department of Chemistry, University of Colorado Boulder 80309 USA
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47
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Butera E, Zammataro A, Pappalardo A, Trusso Sfrazzetto G. Supramolecular Sensing of Chemical Warfare Agents. Chempluschem 2021; 86:681-695. [PMID: 33881227 DOI: 10.1002/cplu.202100071] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 04/06/2021] [Indexed: 12/31/2022]
Abstract
Chemical warfare agents are a class of organic molecules used as chemical weapons due to their high toxicity and lethal effects. For this reason, the fast detection of these compounds in the environment is crucial. Traditional detection methods are based on instrumental techniques, such as mass spectrometry or HPLC, however the use of molecular sensors able to change a detectable property (e. g., luminescence, color, electrical resistance) can be cheaper and faster. Today, molecular sensing of chemical warfare agents is mainly based on the "covalent approach", in which the sensor reacts with the analyte, or on the "supramolecular approach", which involves the formation of non-covalent interactions between the sensor and the analyte. This Review is focused on the recent developments of supramolecular sensors of organophosphorus chemical warfare agents (from 2013). In particular, supramolecular sensors are classified by function of the sensing mechanism: i) Lewis Acids, ii) hydrogen bonds, iii) macrocyclic hosts, iv) multi-topic sensors, v) nanosensors. It is shown how the supramolecular non-covalent approach leads to a reversible sensing and higher selectivity towards the selected analyte respect to other interfering molecules.
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Affiliation(s)
- Ester Butera
- Department of Chemical Sciences, University of Catania, Viale Andrea Doria 6, 95125, Catania, Italy
| | - Agatino Zammataro
- Department of Chemical Sciences, University of Catania, Viale Andrea Doria 6, 95125, Catania, Italy
| | - Andrea Pappalardo
- Department of Chemical Sciences, University of Catania, Viale Andrea Doria 6, 95125, Catania, Italy.,INSTM Udr of Catania, Viale Andrea Doria 6, 95125, Catania, Italy
| | - Giuseppe Trusso Sfrazzetto
- Department of Chemical Sciences, University of Catania, Viale Andrea Doria 6, 95125, Catania, Italy.,INSTM Udr of Catania, Viale Andrea Doria 6, 95125, Catania, Italy
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48
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Poon JKL, Chen Z, Leung SYL, Leung MY, Yam VWW. Geometrical manipulation of complex supramolecular tessellations by hierarchical assembly of amphiphilic platinum(II) complexes. Proc Natl Acad Sci U S A 2021; 118:e2022829118. [PMID: 33542102 PMCID: PMC8017981 DOI: 10.1073/pnas.2022829118] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Here we report complex supramolecular tessellations achieved by the directed self-assembly of amphiphilic platinum(II) complexes. Despite the twofold symmetry, these geometrically simple molecules exhibit complicated structural hierarchy in a columnar manner. A possible key to such an order increase is the topological transition into circular trimers, which are noncovalently interlocked by metal···metal and π-π interactions, thereby allowing for cofacial stacking in a prismatic assembly. Another key to success is to use the immiscibility of the tailored hydrophobic and hydrophilic sidechains. Their phase separation leads to the formation of columnar crystalline nanostructures homogeneously oriented on the substrate, featuring an unusual geometry analogous to a rhombitrihexagonal Archimedean tiling. Furthermore, symmetry lowering of regular motifs by design results in an orthorhombic lattice obtained by the coassembly of two different platinum(II) amphiphiles. These findings illustrate the potentials of supramolecular engineering in creating complex self-assembled architectures of soft materials.
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Affiliation(s)
- Jason Koon-Lam Poon
- Institute of Molecular Functional Materials and Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China
| | - Zhen Chen
- Institute of Molecular Functional Materials and Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China
| | - Sammual Yu-Lut Leung
- Institute of Molecular Functional Materials and Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China
| | - Ming-Yi Leung
- Institute of Molecular Functional Materials and Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China
| | - Vivian Wing-Wah Yam
- Institute of Molecular Functional Materials and Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China
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49
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Leigh DA, Danon JJ, Fielden SDP, Lemonnier JF, Whitehead GFS, Woltering SL. A molecular endless (7 4) knot. Nat Chem 2021; 13:117-122. [PMID: 33318672 DOI: 10.1038/s41557-020-00594-x] [Citation(s) in RCA: 66] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 10/23/2020] [Indexed: 01/30/2023]
Abstract
Current strategies for the synthesis of molecular knots focus on twisting, folding and/or threading molecular building blocks. Here we report that Zn(II) or Fe(II) ions can be used to weave ligand strands to form a woven 3 × 3 molecular grid. We found that the process requires tetrafluoroborate anions to template the assembly of the interwoven grid by binding within the square cavities formed between the metal-coordinated criss-crossed ligands. The strand ends of the grid can subsequently be joined through within-grid alkene metathesis reactions to form a topologically trivial macrocycle (unknot), a doubly interlocked [2]catenane (Solomon link) and a knot with seven crossings in a 258-atom-long closed loop. This 74 knot topology corresponds to that of an endless knot, which is a basic motif of Celtic interlace, the smallest Chinese knot and one of the eight auspicious symbols of Buddhism and Hinduism. The weaving of molecular strands within a discrete layer by anion-template metal-ion coordination opens the way for the synthesis of other molecular knot topologies and to woven polymer materials.
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Affiliation(s)
- David A Leigh
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China. .,Department of Chemistry, University of Manchester, Manchester, UK.
| | - Jonathan J Danon
- Department of Chemistry, University of Manchester, Manchester, UK
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50
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Non‐Covalent Interaction‐Directed Coordination‐Driven Self‐Assembly of Non‐Trivial Supramolecular Topologies. CHEM REC 2021; 21:574-593. [DOI: 10.1002/tcr.202000155] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Revised: 12/22/2020] [Accepted: 01/11/2021] [Indexed: 11/07/2022]
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