1
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Nixon CA. The Composition and Chemistry of Titan's Atmosphere. ACS EARTH & SPACE CHEMISTRY 2024; 8:406-456. [PMID: 38533193 PMCID: PMC10961852 DOI: 10.1021/acsearthspacechem.2c00041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 11/02/2023] [Accepted: 02/02/2024] [Indexed: 03/28/2024]
Abstract
In this review I summarize the current state of knowledge about the composition of Titan's atmosphere and our current understanding of the suggested chemistry that leads to that observed composition. I begin with our present knowledge of the atmospheric composition, garnered from a variety of measurements including Cassini-Huygens, the Atacama Large Millimeter/submillimeter Array, and other ground- and space-based telescopes. This review focuses on the typical vertical profiles of gases at low latitudes rather than global and temporal variations. The main body of the review presents a chemical description of how complex molecules are believed to arise from simpler species, considering all known "stable" molecules-those that have been uniquely identified in the neutral atmosphere. The last section of the review is devoted to the gaps in our present knowledge of Titan's chemical composition and how further work may fill those gaps.
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Affiliation(s)
- Conor A. Nixon
- Planetary Systems Laboratory, NASA Goddard Space Flight Center, 8800 Greenbelt Road, Greenbelt, Maryland 20771, United
States
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2
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Vanuzzo G, Mancini L, Pannacci G, Liang P, Marchione D, Recio P, Tan Y, Rosi M, Skouteris D, Casavecchia P, Balucani N, Hickson KM, Loison JC, Dobrijevic M. Reaction N( 2D) + CH 2CCH 2 (Allene): An Experimental and Theoretical Investigation and Implications for the Photochemical Models of Titan. ACS EARTH & SPACE CHEMISTRY 2022; 6:2305-2321. [PMID: 36303717 PMCID: PMC9589905 DOI: 10.1021/acsearthspacechem.2c00183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 09/08/2022] [Accepted: 09/09/2022] [Indexed: 06/16/2023]
Abstract
We report on a combined experimental and theoretical investigation of the N(2D) + CH2CCH2 (allene) reaction of relevance in the atmospheric chemistry of Titan. Experimentally, the reaction was investigated (i) under single-collision conditions by the crossed molecular beams (CMB) scattering method with mass spectrometric detection and time-of-flight analysis at the collision energy (E c) of 33 kJ/mol to determine the primary products and the reaction micromechanism and (ii) in a continuous supersonic flow reactor to determine the rate constant as a function of temperature from 50 to 296 K. Theoretically, electronic structure calculations of the doublet C3H4N potential energy surface (PES) were performed to assist the interpretation of the experimental results and characterize the overall reaction mechanism. The reaction is found to proceed via barrierless addition of N(2D) to one of the two equivalent carbon-carbon double bonds of CH2CCH2, followed by the formation of several cyclic and linear isomeric C3H4N intermediates that can undergo unimolecular decomposition to bimolecular products with elimination of H, CH3, HCN, HNC, and CN. The kinetic experiments confirm the barrierless nature of the reaction through the measurement of rate constants close to the gas-kinetic rate at all temperatures. Statistical estimates of product branching fractions (BFs) on the theoretical PES were carried out under the conditions of the CMB experiments at room temperature and at temperatures (94 and 175 K) relevant for Titan. Up to 14 competing product channels were statistically predicted with the main ones at E c = 33 kJ/mol being formation of cyclic-CH2C(N)CH + H (BF = 87.0%) followed by CHCCHNH + H (BF = 10.5%) and CH2CCNH + H (BF = 1.4%) the other 11 possible channels being negligible (BFs ranging from 0 to 0.5%). BFs under the other conditions are essentially unchanged. Experimental dynamical information could only be obtained on the overall H-displacement channel, while other possible channels could not be confirmed within the sensitivity of the method. This is also in line with theoretical predictions as the other possible channels are predicted to be negligible, including the HCN/HNC + C2H3 (vinyl) channels (overall BF < 1%). The dynamics and product distributions are dramatically different with respect to those observed in the isomeric reaction N(2D) + CH3CCH (propyne), where at a similar E c the main product channels are CH2NH (methanimine) + C2H (BF = 41%), c-C(N)CH + CH3 (BF = 32%), and CH2CHCN (vinyl cyanide) + H (BF = 12%). Rate coefficients (the recommended value is 1.7 (±0.2) × 10-10 cm3 s-1 over the 50-300 K range) and BFs have been used in a photochemical model of Titan's atmosphere to simulate the effect of the title reaction on the species abundance (including any new products formed) as a function of the altitude.
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Affiliation(s)
- Gianmarco Vanuzzo
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Luca Mancini
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Giacomo Pannacci
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Pengxiao Liang
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Demian Marchione
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Pedro Recio
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Yuxin Tan
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Marzio Rosi
- Dipartimento
di Ingegneria Civile e Ambientale, Università
degli Studi di Perugia, 06100 Perugia, Italy
| | | | - Piergiorgio Casavecchia
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Nadia Balucani
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Kevin M. Hickson
- Université
de Bordeaux, Institut des Sciences Moléculaires,
UMR 5255, F-33400 Talence, France
- CNRS,
Institut des Sciences Moléculaires, UMR 5255, F-33400 Talence, France
| | - Jean-Christophe Loison
- Université
de Bordeaux, Institut des Sciences Moléculaires,
UMR 5255, F-33400 Talence, France
- CNRS,
Institut des Sciences Moléculaires, UMR 5255, F-33400 Talence, France
| | - Michel Dobrijevic
- Laboratoire
d’Astrophysique de Bordeaux, Université
de Bordeaux, CNRS, B18N,
allée Geoffroy Saint-Hilaire, F-33615 Pessac, France
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3
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Vanuzzo G, Marchione D, Mancini L, Liang P, Pannacci G, Recio P, Tan Y, Rosi M, Skouteris D, Casavecchia P, Balucani N. The N( 2D) + CH 2CHCN (Vinyl Cyanide) Reaction: A Combined Crossed Molecular Beam and Theoretical Study and Implications for the Atmosphere of Titan. J Phys Chem A 2022; 126:6110-6123. [PMID: 36053010 PMCID: PMC9483977 DOI: 10.1021/acs.jpca.2c04263] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
The reaction of electronically excited nitrogen atoms,
N(2D), with vinyl cyanide, CH2CHCN, has been
investigated
under single-collision conditions by the crossed molecular beam (CMB)
scattering method with mass spectrometric detection and time-of-flight
(TOF) analysis at the collision energy, Ec, of 31.4 kJ/mol. Synergistic electronic structure calculations of
the doublet potential energy surface (PES) have been performed to
assist in the interpretation of the experimental results and characterize
the overall reaction micromechanism. Statistical (Rice–Ramsperger–Kassel–Marcus,
RRKM) calculations of product branching fractions (BFs) on the theoretical
PES have been carried out at different values of temperature, including
the one corresponding to the temperature (175 K) of Titan’s
stratosphere and at a total energy corresponding to the Ec of the CMB experiment. According to our theoretical
calculations, the reaction is found to proceed via barrierless addition
of N(2D) to the carbon–carbon double bond of CH2=CH–CN, followed by the formation of cyclic
and linear intermediates that can undergo H, CN, and HCN elimination.
In competition, the N(2D) addition to the CN group is also
possible via a submerged barrier, leading ultimately to N2 + C3H3 formation, the most exothermic of all
possible channels. Product angular and TOF distributions have been
recorded for the H-displacement channels leading to the formation
of a variety of possible C3H2N2 isomeric
products. Experimentally, no evidence of CN, HCN, and N2 forming channels was observed. These findings were corroborated
by the theory, which predicts a variety of competing product channels,
following N(2D) addition to the double bond, with the main
ones, at Ec = 31.4 kJ/mol, being six isomeric
H forming channels: c-CH(N)CHCN + H (BF = 35.0%), c-CHNCHCN + H (BF = 28.1%), CH2NCCN + H (BF =
26.3%), c-CH2(N)CCN(cyano-azirine) + H
(BF = 7.4%), trans-HNCCHCN + H (BF = 1.6%), and cis-HNCCHCN + H (BF = 1.3%), while C–C bond breaking
channels leading to c-CH2(N)CH(2H-azirine)
+ CN and c-CH2(N)C + HCN are predicted
to be negligible (0.02% and 0.2%, respectively). The highly exothermic
N2 + CH2CCH (propargyl) channel is also predicted
to be negligible because of the very high isomerization barrier from
the initial addition intermediate to the precursor intermediate able
to lead to products. The predicted product BFs are found to have,
in general, a very weak energy dependence. The above cyclic and linear
products containing an additional C–N bond could be potential
precursors of more complex, N-rich organic molecules that contribute
to the formation of the aerosols on Titan’s upper atmosphere.
Overall, the results are expected to have a significant impact on
the gas-phase chemistry of Titan’s atmosphere and should be
properly included in the photochemical models.
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Affiliation(s)
- Gianmarco Vanuzzo
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Demian Marchione
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Luca Mancini
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Pengxiao Liang
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Giacomo Pannacci
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Pedro Recio
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Yuxin Tan
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Marzio Rosi
- Dipartimento di Ingegneria Civile e Ambientale, Università degli Studi di Perugia, 06125 Perugia, Italy
| | | | - Piergiorgio Casavecchia
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Nadia Balucani
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
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4
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Mancini L, Vanuzzo G, Marchione D, Pannacci G, Liang P, Recio P, Rosi M, Skouteris D, Casavecchia P, Balucani N. The Reaction N( 2D) + CH 3CCH (Methylacetylene): A Combined Crossed Molecular Beams and Theoretical Investigation and Implications for the Atmosphere of Titan. J Phys Chem A 2021; 125:8846-8859. [PMID: 34609869 PMCID: PMC8521525 DOI: 10.1021/acs.jpca.1c06537] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
The reaction of excited
nitrogen atoms N(2D) with CH3CCH (methylacetylene)
was investigated under single-collision
conditions by the crossed molecular beams (CMB) scattering method
with mass spectrometric detection and time-of-flight analysis at the
collision energy (Ec) of 31.0 kJ/mol.
Synergistic electronic structure calculations of the doublet potential
energy surface (PES) were performed to assist the interpretation of
the experimental results and characterize the overall reaction micromechanism.
Theoretically, the reaction is found to proceed via a barrierless addition of N(2D) to the carbon–carbon
triple bond of CH3CCH and an insertion of N(2D) into the CH bond of the methyl group, followed
by the formation of cyclic and linear intermediates that can undergo
H, CH3, and C2H elimination or isomerize to
other intermediates before unimolecularly decaying to a variety of
products. Kinetic calculations for addition and insertion mechanisms
and statistical (Rice-Ramsperger-Kassel-Marcus) computations of product
branching fractions (BFs) on the theoretical PES were performed at
different values of total energy, including the one corresponding
to the temperature (175 K) of Titan’s stratosphere and that
of the CMB experiment. Up to 14 competing product channels were statistically
predicted, with the main ones, at Ec =
31.0 kJ/mol, being the formation of CH2NH (methanimine)
+ C2H (ethylidyne) (BF = 0.41), c-C(N)CH
+ CH3 (BF = 0.32), CH2CHCN (acrylonitrile) +
H (BF = 0.12), and c-CH2C(N)CH + H (BF
= 0.04). Of the 14 possible channels, seven correspond to H displacement
channels of different exothermicity, for a total H channel BF of ∼0.25
at Ec = 31.0 kJ/mol. Experimentally, dynamical
information could only be obtained about the overall H channels. In
particular, the experiment corroborates the formation of acrylonitrile
+ H, which is the most exothermic of all 14 reaction channels and
is theoretically calculated to be the dominant H-forming channel (BF
= 0.12). The products containing a novel C–N bond could be
potential precursors to form other nitriles (C2N2, C3N) or more complex organic species containing N atoms
in planetary atmospheres, such as those of Titan and Pluto. Overall,
the results are expected to have a potentially significant impact
on the understanding of the gas-phase chemistry of Titan’s
atmosphere and the modeling of that atmosphere.
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Affiliation(s)
- Luca Mancini
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Gianmarco Vanuzzo
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Demian Marchione
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Giacomo Pannacci
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Pengxiao Liang
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Pedro Recio
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Marzio Rosi
- Dipartimento di Ingegneria Civile e Ambientale, Università degli Studi di Perugia, 06125 Perugia, Italy
| | | | - Piergiorgio Casavecchia
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
| | - Nadia Balucani
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, 06123 Perugia, Italy
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5
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Abstract
Titan’s haze is strongly suspected to be an HCN-derived polymer, but despite the first in situ measurements by the ESA-Huygens space probe, its chemical composition and formation process remain largely unknown. To investigate this question, we simulated the atmospheric haze formation process, experimentally. We synthesized analogues of Titan’s haze, named Titan tholins, in an irradiated N2–CH4 gas mixture, mimicking Titan’s upper atmosphere chemistry. HCN was monitored in situ in the gas phase simultaneously with the formation and evolution of the haze particles. We show that HCN is produced as long as the particles are absent, and is then progressively consumed when the particles appear and grow. This work highlights HCN as an effective precursor of Titan’s haze and confirms the HCN-derived polymer nature of the haze.
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6
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On an EUV Atmospheric Simulation Chamber to Study the Photochemical Processes of Titan's Atmosphere. Sci Rep 2020; 10:10009. [PMID: 32561886 PMCID: PMC7305212 DOI: 10.1038/s41598-020-66950-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Accepted: 06/01/2020] [Indexed: 11/16/2022] Open
Abstract
The in situ exploration of Titan’s atmosphere requires the development of laboratory experiments to understand the molecular growth pathways initiated by photochemistry in the upper layers of the atmosphere. Key species and dominant reaction pathways are used to feed chemical network models that reproduce the chemical and physical processes of this complex environment. Energetic UV photons initiate highly efficient chemistry by forming reactive species in the ionospheres of the satellite. We present here a laboratory experiment based on a new closed and removable photoreactor coupled here to an Extreme Ultraviolet (EUV) irradiation beam produced by the high-order harmonic generation of a femtosecond laser. This type of EUV stable source allow long-term irradiation experiments in which a plethora of individual reactions can take place. In order to demonstrate the validity of our approach, we irradiated for 7 hours at 89.2 nm, a gas mixture based on N2/CH4 (5%). Using only one wavelength, products of the reaction reveal an efficient photochemistry with the formation of large hydrocarbons but especially organic compounds rich in nitrogen similar to Titan. Among these nitrogen compounds, new species had never before been identified in the mass spectra obtained in situ in Titan’s atmosphere. Their production in this experiment, on the opposite, corroborates previous experimental measurements in the literature on the chemical composition of aerosol analogues produced in the laboratory. Diazo-compounds such as dimethyldiazene (C2H6N2), have been observed and are consistent with the large nitrogen incorporation observed by the aerosols collector pyrolysis instrument of the Huygens probe. This work represents an important step forward in the use of a closed cell chamber irradiated by the innovative EUV source for the generation of photochemical analogues of Titan aerosols. This approach allows to better constrain and understand the growth pathways of nitrogen incorporation into organic aerosols in Titan’s atmosphere.
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7
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Sunuwar S, Diaz A, Diez-Y-Riega H, Manzanares CE. Vibrational fundamental and overtone spectra of C 2H 4 in cryogenic liquid solutions. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 234:118274. [PMID: 32217453 DOI: 10.1016/j.saa.2020.118274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Revised: 03/10/2020] [Accepted: 03/15/2020] [Indexed: 06/10/2023]
Abstract
Vibrational Fundamental and overtone transitions of C2H4 around the Δυ = 1-3 in liquid Ar, Kr, Xe and N2 solutions have been obtained using a low temperature cryostat and a Fourier transform infrared spectrophotometer for wavenumbers between 800 and 10,000 cm-1. The visible CH spectra for Δυ = 6 of ethylene in cryogenic solutions of the same solvents and liquid ethane have been measured with a low temperature cell and the thermal lens technique. Spectra in solutions show great simplification of the bands with respect to gas phase absorption bands. Assignments have been made based on gas phase transitions. Peak positions (ν), wavenumber shifts (Δν), and full widths at half maximum (Δω1/2) are reported. Changes of C2H4 frequencies in liquid Ar, Kr, and Xe seem to correlate with an increase in molar volume, dielectric constant, temperature, and polarizability of the solvents. Influence of the solvent on some fundamental vibrational frequencies are explored using the Onsager model and the polarizable continuum model (PCM). When used in conjunction with calculated anharmonic frequencies, the PCM model shows qualitative agreement with frequency shifts.
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Affiliation(s)
- Suresh Sunuwar
- Department of Chemistry & Biochemistry, Baylor University, 101 Bagby Avenue, Baylor Sciences Building E-216, Waco, TX 76706, United States of America
| | - Ashley Diaz
- Department of Chemistry & Biochemistry, Baylor University, 101 Bagby Avenue, Baylor Sciences Building E-216, Waco, TX 76706, United States of America
| | - Helena Diez-Y-Riega
- Department of Chemistry & Biochemistry, Baylor University, 101 Bagby Avenue, Baylor Sciences Building E-216, Waco, TX 76706, United States of America
| | - Carlos E Manzanares
- Department of Chemistry & Biochemistry, Baylor University, 101 Bagby Avenue, Baylor Sciences Building E-216, Waco, TX 76706, United States of America.
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8
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Ng LL, Tan TL. The analysis of the Coriolis interactions in the v10 = 1, v7 = 1 and v4 = 1 triad rovibrational states of 13C 2D 4 by high-resolution FTIR spectroscopy. Mol Phys 2020. [DOI: 10.1080/00268976.2019.1660818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- L. L. Ng
- Natural Sciences and Science Education, National Institute of Education, Nanyang Technological University, Singapore
| | - T. L. Tan
- Natural Sciences and Science Education, National Institute of Education, Nanyang Technological University, Singapore
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9
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Kawai J, Kebukawa Y, McKay CP, Kobayashi K. Nucleic acid bases in Titan tholins and possible genetic systems in the Titan liquidosphere. LIFE SCIENCES IN SPACE RESEARCH 2019; 20:20-29. [PMID: 30797431 DOI: 10.1016/j.lssr.2018.11.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2018] [Revised: 11/18/2018] [Accepted: 11/26/2018] [Indexed: 06/09/2023]
Abstract
Titan is the largest moon of Saturn and possesses a dense atmosphere composed of nitrogen and methane. Various types of organic compounds (hydrocarbons, nitriles, etc.) have been found on Titan, which were generated by reactions taking place in its atmosphere. These reactions are considered to provide crucial evidence for chemical reactions which may have occurred in the atmosphere of primitive Earth. Cassini discovered several lakes of liquid methane and ethane on Titan's surface; in addition, the presence of ammonia water in its sub-surface was implied. In order to simulate the chemical reactions in Titan's atmosphere, gas mixtures of nitrogen and methane have been exposed to plasma discharges to synthesize complex organic matters. In this study, we focused on the formation of nucleic acid bases and related compounds recovered from synthesized Titan tholins. The five nucleic acid bases that terrestrial life uses (adenine, cytosine, thymine, guanine, and uracil) have already been reported to be present in synthesized Titan tholins. Purines and pyrimidines, including the five aforementioned nucleic acid bases, were extracted from synthesized Titan tholins and analyzed by HPLC and LC/MS. As a result, the pyrimidine bases of isocytosine and 2, 4-diaminopyrimidine were detected together with the terrestrial nucleic acid bases of adenine, uracil, and cytosine. The results obtained in conjunction with those from previous studies show that some nucleic acid bases and related pyrimidine bases are found in synthesized Titan tholins, suggesting that chemical evolutions toward xenogenetic systems could occur in Titan's environment.
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Affiliation(s)
- Jun Kawai
- High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba, Ibaraki, 305-0801, Japan.
| | - Yoko Kebukawa
- Yokohama National University, 79-1 Tokiwadai, Hodogaya-ku, Yokohama, 240-8501, Japan.
| | | | - Kensei Kobayashi
- Yokohama National University, 79-1 Tokiwadai, Hodogaya-ku, Yokohama, 240-8501, Japan.
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10
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Arevalo R, Selliez L, Briois C, Carrasco N, Thirkell L, Cherville B, Colin F, Gaubicher B, Farcy B, Li X, Makarov A. An Orbitrap-based laser desorption/ablation mass spectrometer designed for spaceflight. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2018; 32:1875-1886. [PMID: 30048021 DOI: 10.1002/rcm.8244] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Revised: 07/05/2018] [Accepted: 07/18/2018] [Indexed: 06/08/2023]
Abstract
RATIONALE The investigation of cryogenic planetary environments as potential harbors for extant life and/or contemporary sites of organic synthesis represents an emerging focal point in planetary exploration. Next generation instruments need to be capable of unambiguously determining elemental and/or molecular stoichiometry via highly accurate mass measurements and the separation of isobaric interferences. METHODS An Orbitrap™ analyzer adapted for spaceflight (referred to as the CosmOrbitrap), coupled with a commercial pulsed UV laser source (266 nm), was used to successfully characterize a variety of planetary analog samples via ultrahigh resolution laser desorption/ablation mass spectrometry. The materials analyzed in this study include: jarosite (a hydrous sulfate detected on Mars); magnesium sulfate (a potential component of the subsurface ocean on Europa); uracil (a nucleobase of RNA); and a variety of amino acids. RESULTS The instrument configuration tested here enables: measurement of major elements and organic molecules with ultrahigh mass resolution (m/Δm ≥ 120,000, FWHM); quantification of isotopic abundances with <1.0% (2σ) precision; and identification of highly accurate masses within 3.2 ppm of absolute values. The analysis of a residue of a dilute solution of amino acids demonstrates the capacity to detect twelve amino acids in positive ion mode at concentrations as low as ≤1 pmol/mm2 while maintaining mass resolution and accuracy requirements. CONCLUSIONS The CosmOrbitrap mass analyzer is highly sensitive and delivers mass resolution/accuracy unmatched by any instrument sent into orbit or launched into deep space. This prototype instrument, which maps to a spaceflight implementation, represents a mission-enabling technology capable of advancing planetary exploration for decades to come.
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Affiliation(s)
- Ricardo Arevalo
- Department of Geology, University of Maryland, College Park, MD, 20742, USA
| | - Laura Selliez
- Laboratoire de Physique et Chimie de l'Environnement et de l'Espace (LPC2E), UMR 7328 du CNRS, 45071, Orléans, France
- Laboratoire Atmosphères, Milieux, Observations Spatiales (LATMOS), 78280, Guyancourt, France
| | - Christelle Briois
- Laboratoire de Physique et Chimie de l'Environnement et de l'Espace (LPC2E), UMR 7328 du CNRS, 45071, Orléans, France
| | - Nathalie Carrasco
- Laboratoire Atmosphères, Milieux, Observations Spatiales (LATMOS), 78280, Guyancourt, France
| | - Laurent Thirkell
- Laboratoire de Physique et Chimie de l'Environnement et de l'Espace (LPC2E), UMR 7328 du CNRS, 45071, Orléans, France
| | - Barnabé Cherville
- Laboratoire de Physique et Chimie de l'Environnement et de l'Espace (LPC2E), UMR 7328 du CNRS, 45071, Orléans, France
| | - Fabrice Colin
- Laboratoire de Physique et Chimie de l'Environnement et de l'Espace (LPC2E), UMR 7328 du CNRS, 45071, Orléans, France
| | - Bertrand Gaubicher
- Laboratoire de Physique et Chimie de l'Environnement et de l'Espace (LPC2E), UMR 7328 du CNRS, 45071, Orléans, France
| | - Benjamin Farcy
- Department of Geology, University of Maryland, College Park, MD, 20742, USA
| | - Xiang Li
- Center for Space Science & Technology, University of Maryland, Baltimore County, Baltimore, MD, 21250, USA
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12
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Neish CD, Lorenz RD, Turtle EP, Barnes JW, Trainer MG, Stiles B, Kirk R, Hibbitts CA, Malaska MJ. Strategies for Detecting Biological Molecules on Titan. ASTROBIOLOGY 2018; 18:571-585. [PMID: 29718687 DOI: 10.1089/ast.2017.1758] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Saturn's moon Titan has all the ingredients needed to produce "life as we know it." When exposed to liquid water, organic molecules analogous to those found on Titan produce a range of biomolecules such as amino acids. Titan thus provides a natural laboratory for studying the products of prebiotic chemistry. In this work, we examine the ideal locales to search for evidence of, or progression toward, life on Titan. We determine that the best sites to identify biological molecules are deposits of impact melt on the floors of large, fresh impact craters, specifically Sinlap, Selk, and Menrva craters. We find that it is not possible to identify biomolecules on Titan through remote sensing, but rather through in situ measurements capable of identifying a wide range of biological molecules. Given the nonuniformity of impact melt exposures on the floor of a weathered impact crater, the ideal lander would be capable of precision targeting. This would allow it to identify the locations of fresh impact melt deposits, and/or sites where the melt deposits have been exposed through erosion or mass wasting. Determining the extent of prebiotic chemistry within these melt deposits would help us to understand how life could originate on a world very different from Earth. Key Words: Titan-Prebiotic chemistry-Solar system exploration-Impact processes-Volcanism. Astrobiology 18, 571-585.
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Affiliation(s)
- Catherine D Neish
- 1 Department of Earth Sciences, The University of Western Ontario , London, Canada
| | - Ralph D Lorenz
- 2 The Johns Hopkins Applied Physics Laboratory , Laurel, Maryland
| | | | - Jason W Barnes
- 3 Department of Physics, University of Idaho , Moscow, Idaho
| | | | - Bryan Stiles
- 5 Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California
| | - Randolph Kirk
- 6 United States Geological Survey, Astrogeology Science Center , Flagstaff, Arizona
| | | | - Michael J Malaska
- 5 Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California
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Bacchus-Montabonel MC. Proton-induced collision dynamics on potential prebiotic sulfur species. Phys Chem Chem Phys 2018; 20:9084-9089. [PMID: 29561041 DOI: 10.1039/c8cp00886h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The formation of the building blocks of life and how they could survive under harsh astrophysical environments remains an open question of prebiotic chemistry. Effectively, ion bombardments or intense UV radiation may drive the destruction of prebiotic compounds. The possible role of sulfur in such processes is addressed here for the first time, by comparing directly proton-induced charge transfer for sulfur containing molecules and that for related COMs. The proton collision on mercaptoacetonitrile HSCH2C[triple bond, length as m-dash]N conformers has thus been investigated theoretically in a wide impact energy range modelling various astrophysical environments and compared to related COMs, namely HCN oligomers, in order to exhibit qualitative tendencies.
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Makhnev VY, Kyuberis AA, Zobov NF, Lodi L, Tennyson J, Polyansky OL. High Accuracy ab Initio Calculations of Rotational-Vibrational Levels of the HCN/HNC System. J Phys Chem A 2018; 122:1326-1343. [PMID: 29251934 DOI: 10.1021/acs.jpca.7b10483] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Highly accurate ab initio calculations of vibrational and rotational-vibrational energy levels of the HCN/HNC (hydrogen cyanide/hydrogen isocyanide) isomerising system are presented for several isotopologues. All-electron multireference configuration interaction (MRCI) electronic structure calculations were performed using basis sets up to aug-cc-pCV6Z on a grid of 1541 geometries. The ab initio energies were used to produce an analytical potential energy surface (PES) describing the two minima simultaneously. An adiabatic Born-Oppenheimer diagonal correction (BODC) correction surface as well as a relativistic correction surface were also calculated. These surfaces were used to compute vibrational and rotational-vibrational energy levels up to 25 000 cm-1 which reproduce the extensive set of experimentally known HCN/HNC levels with a root-mean-square deviation σ = 1.5 cm-1. We studied the effect of nonadiabatic effects by introducing opportune radial and angular corrections to the nuclear kinetic energy operator. Empirical determination of two nonadiabatic parameters results in observed energies up to 7000 cm-1 for four HCN isotopologues (HCN, DCN, H13CN, and HC15N) being reproduced with σ = 0.37 cm-1. The height of the isomerization barrier, the isomerization energy and the dissociation energy were computed using a number of models; our best results are 16 809.4, 5312.8, and 43 729 cm-1, respectively.
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Affiliation(s)
- Vladimir Yu Makhnev
- Institute of Applied Physics, Russian Academy of Science , Ulyanov Street 46, Nizhny Novgorod, Russia 603950
| | - Aleksandra A Kyuberis
- Institute of Applied Physics, Russian Academy of Science , Ulyanov Street 46, Nizhny Novgorod, Russia 603950
| | - Nikolai F Zobov
- Institute of Applied Physics, Russian Academy of Science , Ulyanov Street 46, Nizhny Novgorod, Russia 603950
| | - Lorenzo Lodi
- Department of Physics and Astronomy, University College London , Gower Street, London WC1E 6BT, United Kingdom
| | - Jonathan Tennyson
- Department of Physics and Astronomy, University College London , Gower Street, London WC1E 6BT, United Kingdom
| | - Oleg L Polyansky
- Institute of Applied Physics, Russian Academy of Science , Ulyanov Street 46, Nizhny Novgorod, Russia 603950.,Department of Physics and Astronomy, University College London , Gower Street, London WC1E 6BT, United Kingdom
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Lv KP, Norman L, Li YL. Oxygen-Free Biochemistry: The Putative CHN Foundation for Exotic Life in a Hydrocarbon World? ASTROBIOLOGY 2017; 17:1173-1181. [PMID: 29135299 DOI: 10.1089/ast.2016.1574] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Since Earth's biochemistry is carbon-based and water-borne, the main strategies for searching for life elsewhere are "follow the carbon" and "follow the water." Recently, however, there is a growing focus on the prospect that putative exotic life on other planets could rely on unearthly biochemistries. Here, we hypothesize a novel oxygen-free organic chemistry for supporting potential exotic biosystems, which is named CHN biochemistry. This oxygen-free CHN biochemistry starts from simple oxygen-free species (including hydrocarbons, hydrogen cyanide, and nitriles) and produces a range of functional macromolecules that may function in similar ways to terran macromolecules, such as sugars (cyanosugars), acids (cyanoacids), amino acids (amino cyanoacids), and nucleobases (cyanonucleobases). These CHN macromolecules could further interact with each other to generate higher "cyanoester" and "cyanoprotein" systems. In addition, theoretical calculations indicate that the energy changes of some reactions are consistent with their counterparts in Earth's biochemistry. The CHN biochemistry-based life would be applicable in habitats with a low bioavailability of oxygen, such as the alkane lakes of Titan and non-aquatic liquids on extrasolar bodies. Key Words: Oxygen-free biochemistry-Titan-Hydrocarbons-Hydrogen cyanide-Nitriles. Astrobiology 17, 1173-1181.
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Affiliation(s)
- Kong-Peng Lv
- Department of Earth Sciences, University of Hong Kong , Hong Kong
| | - Lucy Norman
- Department of Earth Sciences, University of Hong Kong , Hong Kong
| | - Yi-Liang Li
- Department of Earth Sciences, University of Hong Kong , Hong Kong
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17
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Bacchus-Montabonel MC. Theoretical investigation of proton collisions on prebiotic candidates: hydrogen cyanide polymers. Phys Chem Chem Phys 2017; 19:19566-19572. [PMID: 28338703 DOI: 10.1039/c7cp00826k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
One of the major concerns in prebiotic chemistry is the formation and destruction routes of prebiotic compounds in space. As detected for a long time, hydrogen cyanide (HCN) has been suggested to be a feedstock molecule at the origin of life driving easy oligomerization, in particular to form adenine. This may focus on its first oligomers because its dimer cyanomethanimine was recently observed in star-forming regions, or its trimer aminomalononitrile. With regard to the assumption of an extra-terrestrial origin of life, the stability of such species under ultraviolet radiation or in ion-collisions is an open question. Thus, we investigated theoretically the proton collisions with dimer and trimer isomers of HCN in a wide impact energy range to model various astrophysical environments and exhibit qualitative tendencies.
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Affiliation(s)
| | - Catherine Walsh
- Leiden
Observatory, Leiden University, P.O. Box 9513, 2300 RA Leiden, The Netherlands
- School
of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, U.K
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BAYESIAN EVOLUTION MODELS FOR JUPITER WITH HELIUM RAIN AND DOUBLE-DIFFUSIVE CONVECTION. ACTA ACUST UNITED AC 2016. [DOI: 10.3847/0004-637x/832/2/113] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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20
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Ng LL, Tan TL, Wong A, Appadoo DRT, McNaughton D. High-resolution synchrotron FTIR spectroscopic analysis of the Coriolis interaction between the v10 = 1 and v8 = 1 states of ethylene-cis-1,2-d2. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1184341] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- L. L. Ng
- Natural Sciences and Science Education, National Institute of Education, Nanyang Technological University, 1 Nanyang Walk, Singapore 637616, Singapore
| | - T. L. Tan
- Natural Sciences and Science Education, National Institute of Education, Nanyang Technological University, 1 Nanyang Walk, Singapore 637616, Singapore
| | - Andy Wong
- School of Chemistry, Monash University, Wellington Rd., Clayton, Victoria 3800, Australia
| | | | - Don McNaughton
- School of Chemistry, Monash University, Wellington Rd., Clayton, Victoria 3800, Australia
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21
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Hargreaves RJ, Buzan E, Dulick M, Bernath PF. High-resolution absorption cross sections of C2H6 at elevated temperatures. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.molap.2015.09.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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22
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Waldmann IP, Rocchetto M, Tinetti G, Barton EJ, Yurchenko SN, Tennyson J. ${\mathcal{T}}$-REx. II. RETRIEVAL OF EMISSION SPECTRA. ACTA ACUST UNITED AC 2015. [DOI: 10.1088/0004-637x/813/1/13] [Citation(s) in RCA: 110] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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23
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Willis PA, Creamer JS, Mora MF. Implementation of microchip electrophoresis instrumentation for future spaceflight missions. Anal Bioanal Chem 2015; 407:6939-63. [PMID: 26253225 DOI: 10.1007/s00216-015-8903-z] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2015] [Revised: 06/30/2015] [Accepted: 07/03/2015] [Indexed: 11/27/2022]
Abstract
We present a comprehensive discussion of the role that microchip electrophoresis (ME) instrumentation could play in future NASA missions of exploration, as well as the current barriers that must be overcome to make this type of chemical investigation possible. We describe how ME would be able to fill fundamental gaps in our knowledge of the potential for past, present, or future life beyond Earth. Despite the great promise of ME for ultrasensitive portable chemical analysis, to date, it has never been used on a robotic mission of exploration to another world. We provide a current snapshot of the technology readiness level (TRL) of ME instrumentation, where the TRL is the NASA systems engineering metric used to evaluate the maturity of technology, and its fitness for implementation on missions. We explain how the NASA flight implementation process would apply specifically to ME instrumentation, and outline the scientific and technology development issues that must be addressed for ME analyses to be performed successfully on another world. We also outline research demonstrations that could be accomplished by independent researchers to help advance the TRL of ME instrumentation for future exploration missions. The overall approach described here for system development could be readily applied to a wide range of other instrumentation development efforts having broad societal and commercial impact.
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Affiliation(s)
- Peter A Willis
- Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Dr., Pasadena, CA, 91109, USA,
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Okochi K, Mieno T, Kondo K, Hasegawa S, Kurosawa K. Possibility of production of amino acids by impact reaction using a light-gas gun as a simulation of asteroid impacts. ORIGINS LIFE EVOL B 2015; 45:195-205. [PMID: 25796389 DOI: 10.1007/s11084-015-9419-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2014] [Accepted: 12/27/2014] [Indexed: 11/28/2022]
Abstract
In order to investigate impact production of carbonaceous products by asteroids on Titan and other satellites and planets, simulation experiments were carried out using a 2-stage light gas gun. A small polycarbonate or metal bullet with about 6.5 km/s was injected into a pressurized target chamber filled with 1 atm of nitrogen gas, to collide with a ice + iron target or an iron target or a ice + hexane + iron target. After the impact, black soot including fine particles was deposited on the chamber wall. The soot was carefully collected and analyzed by High Performance Liquid Chromatography (HPLC), Fourier Transform Infrared Spectroscopy (FT-IR), and Laser Desorption Time-of-Flight Mass Spectrometry (LD-ToF-MS). As a result of the HPLC analysis, about 0.04-8 pmol of glycine, and a lesser amount of alanine were found in the samples when the ice + hexane + iron target was used. In case of the ice + iron target and the iron target, less amino acids were produced. The identification of the amino acids was also supported by FTIR and LD-ToF-MS analysis.
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Affiliation(s)
- Kazuki Okochi
- Department of Physics, Shizuoka University, 836, Oya, Suruga-ku, Shizuoka, 422-8529, Japan,
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25
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Waldmann IP, Tinetti G, Rocchetto M, Barton EJ, Yurchenko SN, Tennyson J. TAU-REX I: A NEXT GENERATION RETRIEVAL CODE FOR EXOPLANETARY ATMOSPHERES. ACTA ACUST UNITED AC 2015. [DOI: 10.1088/0004-637x/802/2/107] [Citation(s) in RCA: 173] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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26
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Cumeras R, Figueras E, Davis CE, Baumbach JI, Gràcia I. Review on ion mobility spectrometry. Part 2: hyphenated methods and effects of experimental parameters. Analyst 2015; 140:1391-410. [PMID: 25465248 PMCID: PMC4331244 DOI: 10.1039/c4an01101e] [Citation(s) in RCA: 108] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ion Mobility Spectrometry (IMS) is a widely used and 'well-known' technique of ion separation in the gaseous phase based on the differences of ion mobilities under an electric field. This technique has received increased interest over the last several decades as evidenced by the pace and advances of new IMS devices available. In this review we explore the hyphenated techniques that are used with IMS, specifically mass spectrometry as an identification approach and a multi-capillary column as a pre-separation approach. Also, we will pay special attention to the key figures of merit of the ion mobility spectrum and how data sets are treated, and the influences of the experimental parameters on both conventional drift time IMS (DTIMS) and miniaturized IMS also known as high Field Asymmetric IMS (FAIMS) in the planar configuration. The present review article is preceded by a companion review article which details the current instrumentation and contains the sections that configure both conventional DTIMS and FAIMS devices. These reviews will give the reader an insightful view of the main characteristics and aspects of the IMS technique.
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Affiliation(s)
- R Cumeras
- Institut de Microelectrònica de Barcelona, IMB-CNM (CSIC), Esfera UAB, Campus UAB s/n, E-08193 Bellaterra, Barcelona, Spain.
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27
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Motiyenko RA, Margulès L, Alekseev EA, Guillemin JC. High-Resolution Millimeter Wave Spectroscopy and Ab Initio Calculations of Aminomalononitrile. J Phys Chem A 2015; 119:1048-54. [DOI: 10.1021/jp512625s] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Roman A. Motiyenko
- Laboratoire de
Physique des Lasers, Atomes et Molécules, UMR CNRS 8523, Université de Lille 1, F-59655 Villeneuve d’Ascq Cedex, France
| | - Laurent Margulès
- Laboratoire de
Physique des Lasers, Atomes et Molécules, UMR CNRS 8523, Université de Lille 1, F-59655 Villeneuve d’Ascq Cedex, France
| | - Eugen A. Alekseev
- Institute of Radio Astronomy of NASU, Chervonopraporna 4, 61002 Kharkiv, Ukraine
| | - Jean-Claude Guillemin
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, UMR 6226, 11 Allée de Beaulieu, CS
50837, F-35708 Rennes Cedex 7, France
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28
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Toumi A, Piétri N, Couturier-Tamburelli I. Infrared study of matrix-isolated ethyl cyanide: simulation of the photochemistry in the atmosphere of Titan. Phys Chem Chem Phys 2015; 17:30352-63. [DOI: 10.1039/c5cp03616j] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Low-temperature Ar matrix isolation has been carried out to investigate the infrared spectrum of ethyl cyanide (CH3CH2CN), a molecule present in the atmosphere of Titan.
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Affiliation(s)
- A. Toumi
- Aix-Marseille Université
- CNRS
- PIIM
- UMR 7345
- 13397 Marseille
| | - N. Piétri
- Aix-Marseille Université
- CNRS
- PIIM
- UMR 7345
- 13397 Marseille
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Puzzarini C, Biczysko M, Bloino J, Barone V. ACCURATE SPECTROSCOPIC CHARACTERIZATION OF OXIRANE: A VALUABLE ROUTE TO ITS IDENTIFICATION IN TITAN'S ATMOSPHERE AND THE ASSIGNMENT OF UNIDENTIFIED INFRARED BANDS. THE ASTROPHYSICAL JOURNAL 2014; 785:107. [PMID: 26543240 PMCID: PMC4630858 DOI: 10.1088/0004-637x/785/2/107] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
In an effort to provide an accurate spectroscopic characterization of oxirane, state-of-the-art computational methods and approaches have been employed to determine highly accurate fundamental vibrational frequencies and rotational parameters. Available experimental data were used to assess the reliability of our computations, and an accuracy on average of 10 cm-1 for fundamental transitions as well as overtones and combination bands has been pointed out. Moving to rotational spectroscopy, relative discrepancies of 0.1%, 2%-3%, and 3%-4% were observed for rotational, quartic, and sextic centrifugal-distortion constants, respectively. We are therefore confident that the highly accurate spectroscopic data provided herein can be useful for identification of oxirane in Titan's atmosphere and the assignment of unidentified infrared bands. Since oxirane was already observed in the interstellar medium and some astronomical objects are characterized by very high D/H ratios, we also considered the accurate determination of the spectroscopic parameters for the mono-deuterated species, oxirane-d1. For the latter, an empirical scaling procedure allowed us to improve our computed data and to provide predictions for rotational transitions with a relative accuracy of about 0.02% (i.e., an uncertainty of about 40 MHz for a transition lying at 200 GHz).
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Affiliation(s)
- Cristina Puzzarini
- Dipartimento di Chimica "Giacomo Ciamician," Università di Bologna, Via Selmi 2, I-40126 Bologna, Italy;
| | - Malgorzata Biczysko
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy ; Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca CNR, Via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Julien Bloino
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy ; Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca CNR, Via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy
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Banerjee A, Ganguly G, Tripathi R, Nair NN, Paul A. Unearthing the Mechanism of Prebiotic Nitrile Bond Reduction in Hydrogen Cyanide through a Curious Association of Two Molecular Radical Anions. Chemistry 2014; 20:6348-57. [DOI: 10.1002/chem.201304627] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2013] [Revised: 01/24/2014] [Indexed: 11/09/2022]
Affiliation(s)
- Ambar Banerjee
- Raman Centre for Atomic Molecular and Optical Sciences, Indian Association for the Cultivation of Science, 2A/2B Raja S.C. Mullick Road, Kolkata, 700032 (India)
| | - Gaurab Ganguly
- Raman Centre for Atomic Molecular and Optical Sciences, Indian Association for the Cultivation of Science, 2A/2B Raja S.C. Mullick Road, Kolkata, 700032 (India)
| | - Ravi Tripathi
- Department of Chemistry, Indian Institute of Technology Kanpur, IIT Kanpur, Kalyanpur, Kanpur, UP 208016 (India)
| | - Nisanth N. Nair
- Department of Chemistry, Indian Institute of Technology Kanpur, IIT Kanpur, Kalyanpur, Kanpur, UP 208016 (India)
| | - Ankan Paul
- Raman Centre for Atomic Molecular and Optical Sciences, Indian Association for the Cultivation of Science, 2A/2B Raja S.C. Mullick Road, Kolkata, 700032 (India)
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32
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Li L, Achterberg RK, Conrath BJ, Gierasch PJ, Smith MA, Simon-Miller AA, Nixon CA, Orton GS, Flasar FM, Jiang X, Baines KH, Morales-Juberías R, Ingersoll AP, Vasavada AR, Del Genio AD, West RA, Ewald SP. Strong temporal variation over one Saturnian year: from Voyager to Cassini. Sci Rep 2013; 3:2410. [PMID: 23934437 PMCID: PMC3740281 DOI: 10.1038/srep02410] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2013] [Accepted: 07/22/2013] [Indexed: 11/09/2022] Open
Abstract
Here we report the combined spacecraft observations of Saturn acquired over one Saturnian year (~29.5 Earth years), from the Voyager encounters (1980-81) to the new Cassini reconnaissance (2009-10). The combined observations reveal a strong temporal increase of tropic temperature (~10 Kelvins) around the tropopause of Saturn (i.e., 50 mbar), which is stronger than the seasonal variability (~a few Kelvins). We also provide the first estimate of the zonal winds at 750 mbar, which is close to the zonal winds at 2000 mbar. The quasi-consistency of zonal winds between these two levels provides observational support to a numerical suggestion inferring that the zonal winds at pressures greater than 500 mbar do not vary significantly with depth. Furthermore, the temporal variation of zonal winds decreases its magnitude with depth, implying that the relatively deep zonal winds are stable with time.
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Affiliation(s)
- Liming Li
- University of Houston, Houston, TX, USA.
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Simple Organics and Biomonomers Identified in HCN Polymers: An Overview. Life (Basel) 2013; 3:421-48. [PMID: 25369814 PMCID: PMC4187177 DOI: 10.3390/life3030421] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Revised: 06/18/2013] [Accepted: 06/28/2013] [Indexed: 11/23/2022] Open
Abstract
Hydrogen cyanide (HCN) is a ubiquitous molecule in the Universe. It is a compound that is easily produced in significant yields in prebiotic simulation experiments using a reducing atmosphere. HCN can spontaneously polymerise under a wide set of experimental conditions. It has even been proposed that HCN polymers could be present in objects such as asteroids, moons, planets and, in particular, comets. Moreover, it has been suggested that these polymers could play an important role in the origin of life. In this review, the simple organics and biomonomers that have been detected in HCN polymers, the analytical techniques and procedures that have been used to detect and characterise these molecules and an exhaustive classification of the experimental/environmental conditions that favour the formation of HCN polymers are summarised. Nucleobases, amino acids, carboxylic acids, cofactor derivatives and other compounds have been identified in HCN polymers. The great molecular diversity found in HCN polymers encourages their placement at the central core of a plausible protobiological system.
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34
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Jung SH, Choe JC. Mechanisms of prebiotic adenine synthesis from HCN by oligomerization in the gas phase. ASTROBIOLOGY 2013; 13:465-75. [PMID: 23659646 DOI: 10.1089/ast.2013.0973] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We explored the potential energy surfaces for adenine synthesis by oligomerizations of HCN or HNC from CBS-QB3 calculations. The pathways have been obtained for the formation of the covalently bound HCN dimer, trimer, tetramer, and pentamer (adenine) by sequential additions of HCN or HNC. The activation energies of the individual oligomerization stages are a few hundred kilojoules per mole, which prevent efficient adenine synthesis in interstellar space or in the atmosphere of Titan. On the other hand, when the oligomerizations start from HCNH(+), the activation energies of sequential HCN or HNC additions are significantly reduced. Kinetic analyses results suggest that adenine synthesis by proton-catalyzed oligomerizations cannot occur efficiently in interstellar space or in the atmosphere of Titan, even though some oligomerization stages can occur under the latter condition.
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Affiliation(s)
- Sun Hwa Jung
- Department of Chemistry, Dongguk University-Seoul, Seoul, Korea
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Fegley B. Properties and Composition of the Terrestrial Oceans and of the Atmospheres of the Earth and Other Planets. AGU REFERENCE SHELF 2013. [DOI: 10.1029/rf001p0320] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Fortenberry RC, Huang X, Crawford TD, Lee TJ. The 1 3A′ HCN and 1 3A′ HCO+ Vibrational Frequencies and Spectroscopic Constants from Quartic Force Fields. J Phys Chem A 2012; 117:9324-30. [DOI: 10.1021/jp309243s] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ryan C. Fortenberry
- NASA Ames Research Center, Moffett Field, California 94035-1000, United States
| | - Xinchuan Huang
- SETI Institute, 189 Bernardo Avenue, Suite 100, Mountain View, California 94043,
United States
| | - T. Daniel Crawford
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Timothy J. Lee
- NASA Ames Research Center, Moffett Field, California 94035-1000, United States
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Prebiotic synthesis of simple sugars by photoredox systems chemistry. Nat Chem 2012; 4:895-9. [PMID: 23089863 DOI: 10.1038/nchem.1467] [Citation(s) in RCA: 163] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2012] [Accepted: 08/23/2012] [Indexed: 11/09/2022]
Abstract
A recent synthesis of activated pyrimidine ribonucleotides under prebiotically plausible conditions relied on mixed oxygenous and nitrogenous systems chemistry. As it stands, this synthesis provides support for the involvement of RNA in the origin of life, but such support would be considerably strengthened if the sugar building blocks for the synthesis--glycolaldehyde and glyceraldehyde--could be shown to derive from one carbon feedstock molecules using similarly mixed oxygenous and nitrogenous systems chemistry. Here, we show that these sugars can be formed from hydrogen cyanide by ultraviolet irradiation in the presence of cyanometallates in a remarkable systems chemistry process. Using copper cyanide complexes, the process operates catalytically to disproportionate hydrogen cyanide, first generating the sugars and then sequestering them as simple derivatives.
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Hartle RE, Sittler EC, Ogilvie KW, Scudder JD, Lazarus AJ, Atreya SK. Titan's ion exosphere observed from Voyager 1. ACTA ACUST UNITED AC 2012. [DOI: 10.1029/ja087ia03p01383] [Citation(s) in RCA: 148] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Bertaux JL, Kockarts G. Distribution of molecular hydrogen in the atmosphere of Titan. ACTA ACUST UNITED AC 2012. [DOI: 10.1029/ja088ia11p08716] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Strobel DF, Shemansky DE. EUV emission from Titan's upper atmosphere: Voyager 1 encounter. ACTA ACUST UNITED AC 2012. [DOI: 10.1029/ja087ia03p01361] [Citation(s) in RCA: 157] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Smith GR, Strobel DF, Broadfoot AL, Sandel BR, Shemansky DE, Holberg JB. Titan's upper atmosphere: Composition and temperature from the EUV solar occultation results. ACTA ACUST UNITED AC 2012. [DOI: 10.1029/ja087ia03p01351] [Citation(s) in RCA: 134] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Sittler EC, Ogilvie KW, Scudder JD. Survey of low-energy plasma electrons in Saturn's magnetosphere: Voyagers 1 and 2. ACTA ACUST UNITED AC 2012. [DOI: 10.1029/ja088ia11p08847] [Citation(s) in RCA: 201] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Samuelson RE, Maguire WC, Hanel RA, Kunde VG, Jennings DE, Yung YL, Aikin AC. CO2on Titan. ACTA ACUST UNITED AC 2012. [DOI: 10.1029/ja088ia11p08709] [Citation(s) in RCA: 114] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Smith GR, Shemansky DE, Holberg JB, Broadfoot AL, Sandel BR, McConnell JC. Saturn's upper atmosphere from the Voyager 2 Euv solar and stellar occultations. ACTA ACUST UNITED AC 2012. [DOI: 10.1029/ja088ia11p08667] [Citation(s) in RCA: 95] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Mora MF, Stockton AM, Willis PA. Microchip capillary electrophoresis instrumentation for in situ analysis in the search for extraterrestrial life. Electrophoresis 2012; 33:2624-38. [DOI: 10.1002/elps.201200102] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Hörst SM, Yelle RV, Buch A, Carrasco N, Cernogora G, Dutuit O, Quirico E, Sciamma-O'Brien E, Smith MA, Somogyi A, Szopa C, Thissen R, Vuitton V. Formation of amino acids and nucleotide bases in a Titan atmosphere simulation experiment. ASTROBIOLOGY 2012; 12:809-17. [PMID: 22917035 PMCID: PMC3444770 DOI: 10.1089/ast.2011.0623] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The discovery of large (>100 u) molecules in Titan's upper atmosphere has heightened astrobiological interest in this unique satellite. In particular, complex organic aerosols produced in atmospheres containing C, N, O, and H, like that of Titan, could be a source of prebiotic molecules. In this work, aerosols produced in a Titan atmosphere simulation experiment with enhanced CO (N(2)/CH(4)/CO gas mixtures of 96.2%/2.0%/1.8% and 93.2%/5.0%/1.8%) were found to contain 18 molecules with molecular formulae that correspond to biological amino acids and nucleotide bases. Very high-resolution mass spectrometry of isotopically labeled samples confirmed that C(4)H(5)N(3)O, C(4)H(4)N(2)O(2), C(5)H(6)N(2)O(2), C(5)H(5)N(5), and C(6)H(9)N(3)O(2) are produced by chemistry in the simulation chamber. Gas chromatography-mass spectrometry (GC-MS) analyses of the non-isotopic samples confirmed the presence of cytosine (C(4)H(5)N(3)O), uracil (C(5)H(4)N(2)O(2)), thymine (C(5)H(6)N(2)O(2)), guanine (C(5)H(5)N(5)O), glycine (C(2)H(5)NO(2)), and alanine (C(3)H(7)NO(2)). Adenine (C(5)H(5)N(5)) was detected by GC-MS in isotopically labeled samples. The remaining prebiotic molecules were detected in unlabeled samples only and may have been affected by contamination in the chamber. These results demonstrate that prebiotic molecules can be formed by the high-energy chemistry similar to that which occurs in planetary upper atmospheres and therefore identifies a new source of prebiotic material, potentially increasing the range of planets where life could begin.
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Affiliation(s)
- S M Hörst
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, Colorado 80309, USA.
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Li BT, Li LL, Wu HS. Theoretical calculation about the valence and Rydberg excited states of hydrogen cyanide. J Comput Chem 2012; 33:484-9. [PMID: 22120208 DOI: 10.1002/jcc.21991] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2010] [Revised: 10/11/2011] [Indexed: 11/08/2022]
Abstract
The singlet and triplet excited states of hydrogen cyanide have been computed by using the complete active space self-consistent field and completed active space second order perturbation methods with the atomic natural orbital (ANO-L) basis set. Through calculations of vertical excitation energies, we have probed the transitions from ground state to valence excited states, and further extensions to the Rydberg states are achieved by adding 1s1p1d Rydberg orbitals into the ANO-L basis set. Four singlet and nine triplet excited states have been optimized. The computed adiabatic energies and the vertical transition energies agree well with the available experimental data and the inconsistencies with the available theoretical reports are discussed in detail.
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Affiliation(s)
- Bu-Tong Li
- Department of Chemistry, Shanxi Normal University, Linfen 041004, China
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Huber C, Kraus F, Hanzlik M, Eisenreich W, Wächtershäuser G. Elements of metabolic evolution. Chemistry 2012; 18:2063-80. [PMID: 22241585 DOI: 10.1002/chem.201102914] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2011] [Indexed: 11/09/2022]
Abstract
Research into the origin of evolution is polarized between a genetics-first approach, with its focus on polymer replication, and a metabolism-first approach that takes aim at chemical reaction cycles. Taking the latter approach, we explored reductive carbon fixation in a volcanic hydrothermal setting, driven by the chemical potential of quenched volcanic fluids for converting volcanic C1 compounds into organic products by transition-metal catalysts. These catalysts are assumed to evolve by accepting ever-new organic products as ligands for enhancing their catalytic power, which in turn enhances the rates of synthetic pathways that give rise to ever-new organic products, with the overall effect of a self-expanding metabolism. We established HCN, CO, and CH(3)SH as carbon nutrients, CO and H(2) as reductants, and iron-group transition metals as catalysts. In one case, we employed the "cyano-system" [Ni(OH)(CN)] with [Ni(CN)(4)](2-) as the dominant nickel-cyano species. This reaction mainly produced α-amino acids and α-hydroxy acids as well as various intermediates and derivatives. An organo-metal-catalyzed mechanism is suggested that mainly builds carbon skeletons by repeated cyano insertions, with minor CO insertions in the presence of CO. The formation of elemental nickel (Ni(0)) points to an active reduced-nickel species. In another case, we employed the mercapto-carbonyl system [Co(2)(CO)(8)]/Ca(OH)(2)/CO for the double-carbonylation of mercaptans. In a "hybrid system", we combined benzyl mercaptan with the cyano system, in which [Ni(OH)(CN)] was the most productive for the double-carbon-fixation reaction. Finally, we demonstrated that the addition of products of the cyano system (Gly, Ala) to the hybrid system increased productivity. These results demonstrate the chemical possibility of metabolic evolution through rate-promotion of one synthetic reaction by the products of another.
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Affiliation(s)
- Claudia Huber
- Lehrstuhl für Biochemie, Department of Chemistry, Technische Universität München, Lichtenbergstrasse 4, 85747 Garching, Germany
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