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Chebaro Z, Mesmar JE, Badran A, Al-Sawalmih A, Maresca M, Baydoun E. Halophila stipulacea: A Comprehensive Review of Its Phytochemical Composition and Pharmacological Activities. Biomolecules 2024; 14:991. [PMID: 39199379 PMCID: PMC11353240 DOI: 10.3390/biom14080991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 08/09/2024] [Accepted: 08/10/2024] [Indexed: 09/01/2024] Open
Abstract
Halophila stipulacea (Forsskål and Niebuhr) Ascherson is a small marine seagrass that belongs to the Hydrocharitaceae family. It is native to the Red Sea, Persian Gulf, and Indian Ocean and has successfully invaded the Mediterranean and Caribbean Seas. This article summarizes the pharmacological activities and phytochemical content of H. stipulacea, along with its botanical and ecological characteristics. Studies have shown that H. stipulacea is rich in polyphenols and terpenoids. Additionally, it is rich in proteins, lipids, and carbohydrates, contributing to its nutritional value. Several biological activities are reported by this plant, including antimicrobial, antioxidant, anticancer, anti-inflammatory, anti-metabolic disorders, and anti-osteoclastogenic activities. Further research is needed to validate the efficacy and safety of this plant and to investigate the mechanisms of action underlying the observed effects.
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Affiliation(s)
- Ziad Chebaro
- Department of Biology, American University of Beirut, Riad El Solh, Beirut 1107 2020, Lebanon; (Z.C.); (J.E.M.)
| | - Joelle Edward Mesmar
- Department of Biology, American University of Beirut, Riad El Solh, Beirut 1107 2020, Lebanon; (Z.C.); (J.E.M.)
| | - Adnan Badran
- Department of Nutrition, University of Petra, Amman 11196, Jordan;
| | - Ali Al-Sawalmih
- Marine Science Station, University of Jordan, Aqaba 11942, Jordan;
| | - Marc Maresca
- Aix Marseille Univ, CNRS, Centrale Med, ISM2, 13013 Marseille, France
| | - Elias Baydoun
- Department of Biology, American University of Beirut, Riad El Solh, Beirut 1107 2020, Lebanon; (Z.C.); (J.E.M.)
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2
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Cui K, Wang S, Pei Y, Zhou B. Occurrence and distribution of antibiotic pollution and antibiotic resistance genes in seagrass meadow sediments based on metagenomics. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 935:173438. [PMID: 38782270 DOI: 10.1016/j.scitotenv.2024.173438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 05/19/2024] [Accepted: 05/20/2024] [Indexed: 05/25/2024]
Abstract
Seagrass meadows are one of the most important coastal ecosystems that provide essential ecological and economic services. The contamination levels of antibiotic and antibiotic resistance genes (ARGs) in coastal ecosystems are severely elevated owing to anthropogenic disturbances, such as terrestrial input, aquaculture effluent, and sewage discharge. However, few studies have focused on the occurrence and distribution of antibiotics and their corresponding ARGs in this habitat. Thus, we investigated the antibiotic and ARGs profiles, microbial communities, and ARG-carrying host bacteria in typical seagrass meadow sediments collected from Swan Lake, Caofeidian shoal harbor, Qingdao Bay, and Sishili Bay in the Bohai Sea and northern Yellow Sea. The total concentrations of 30 detected antibiotics ranged from 99.35 to 478.02 μg/kg, tetracyclines were more prevalent than other antibiotics. Metagenomic analyses showed that 342 ARG subtypes associated with 22 ARG types were identified in the seagrass meadow sediments. Multidrug resistance genes and RanA were the most dominant ARG types and subtypes, respectively. Co-occurrence network analysis revealed that Halioglobus, Zeaxanthinibacter, and Aureitalea may be potential hosts at the genus level, and the relative abundances of these bacteria were higher in Sishili Bay than those in other areas. This study provided important insights into the pollution status of antibiotics and ARGs in typical seagrass meadow sediments. Effective management should be performed to control the potential ecological health risks in seagrass meadow ecosystems.
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Affiliation(s)
- Kaixuan Cui
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China; Laboratory for Marine Ecology and Environmental Science, Qingdao Marine Science and Technology Center, Qingdao, 266237, China
| | - Shumin Wang
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
| | - Yanzhao Pei
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
| | - Bin Zhou
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China; Laboratory for Marine Ecology and Environmental Science, Qingdao Marine Science and Technology Center, Qingdao, 266237, China.
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3
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Floyd M, East HK, Traganos D, Musthag A, Guest J, Hashim AS, Evans V, Helber S, Unsworth RKF, Suggitt AJ. Rapid seagrass meadow expansion in an Indian Ocean bright spot. Sci Rep 2024; 14:10879. [PMID: 38740840 DOI: 10.1038/s41598-024-61088-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Accepted: 04/30/2024] [Indexed: 05/16/2024] Open
Abstract
The areal extent of seagrass meadows is in rapid global decline, yet they provide highly valuable societal benefits. However, their conservation is hindered by data gaps on current and historic spatial extents. Here, we outline an approach for national-scale seagrass mapping and monitoring using an open-source platform (Google Earth Engine) and freely available satellite data (Landsat, Sentinel-2) that can be readily applied in other countries globally. Specifically, we map contemporary (2021) and historical (2000-2021; n = 10 maps) shallow water seagrass extent across the Maldives. We found contemporary Maldivian seagrass extent was ~ 105 km2 (overall accuracy = 82.04%) and, notably, that seagrass area increased threefold between 2000 and 2021 (linear model, + 4.6 km2 year-1, r2 = 0.93, p < 0.001). There was a strongly significant association between seagrass and anthropogenic activity (p < 0.001) that we hypothesize to be driven by nutrient loading and/or altered sediment dynamics (from large scale land reclamation), which would represent a beneficial anthropogenic influence on Maldivian seagrass meadows. National-scale tropical seagrass expansion is unique against the backdrop of global seagrass decline and we therefore highlight the Maldives as a rare global seagrass 'bright spot' highly worthy of increased attention across scientific, commercial, and conservation policy contexts.
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Affiliation(s)
- Matthew Floyd
- Department of Geography and Environmental Sciences, Faculty of Engineering and Environment, Northumbria University, Newcastle Upon Tyne, NE1 8ST, UK.
| | - Holly K East
- Department of Geography and Environmental Sciences, Faculty of Engineering and Environment, Northumbria University, Newcastle Upon Tyne, NE1 8ST, UK
| | - Dimosthenis Traganos
- German Aerospace Centre (DLR), Remote Sensing Technology Institute, 12489, Berlin, Germany
| | - Azim Musthag
- Small Island Research Group, Faresmaathoda, 10780, Maldives
| | - James Guest
- School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne, NE1 7RU, UK
| | - Aminath S Hashim
- Blue Marine Foundation, M. Beach Side, Handhuvaree Hingun, Malé, 20285, Maldives
| | - Vivienne Evans
- Blue Marine Foundation, Somerset House, Strand, London, WC2R 1LA, UK
| | - Stephanie Helber
- Department of Geography and Environmental Sciences, Faculty of Engineering and Environment, Northumbria University, Newcastle Upon Tyne, NE1 8ST, UK
| | - Richard K F Unsworth
- Seagrass Ecosystem Research Group, Faculty of Science and Engineering, Swansea University, Swansea, SA2 8PP, Wales, UK
| | - Andrew J Suggitt
- Department of Geography and Environmental Sciences, Faculty of Engineering and Environment, Northumbria University, Newcastle Upon Tyne, NE1 8ST, UK
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4
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Cobacho SP, van de Leemput IA, Holmgren M, Christianen MJA. Impact of human disturbance on biogeochemical fluxes in tropical seascapes. MARINE ENVIRONMENTAL RESEARCH 2024; 197:106479. [PMID: 38583357 DOI: 10.1016/j.marenvres.2024.106479] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 02/20/2024] [Accepted: 03/25/2024] [Indexed: 04/09/2024]
Abstract
Tropical seascapes rely on the feedback relationships among mangrove forests, seagrass meadows, and coral reefs, as they mutually facilitate and enhance each other's functionality. Biogeochemical fluxes link tropical coastal habitats by exchanging material flows and energy through various natural processes that determine the conditions for life and ecosystem functioning. However, little is known about the seascape-scale implications of anthropogenic disruptions to these linkages. Despite the limited number of integrated empirical studies available (with only 11 out of 81 selected studies focusing on the integrated dynamics of mangroves, seagrass, and corals), this review emphasizes the importance of biogeochemical fluxes for ecosystem connectivity in tropical seascapes. It identifies four primary anthropogenic influences that can disturb these fluxes-nutrient enrichment, chemical pollution, microbial pollution, and solid waste accumulation-resulting in eutrophication, increased disease incidence, toxicity, and disruptions to water carbonate chemistry. This review also highlights significant knowledge gaps in our understanding of biogeochemical fluxes and ecosystem responses to perturbations in tropical seascapes. Addressing these knowledge gaps is crucial for developing practical strategies to conserve and manage connected seascapes effectively. Integrated research is needed to shed light on the complex interactions and feedback mechanisms within these ecosystems, providing valuable insights for conservation and management practices.
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Affiliation(s)
- Sara P Cobacho
- Aquatic Ecology and Water Quality Management Group, Department of Environmental Sciences, Wageningen University, 6708, PB Wageningen, the Netherlands.
| | - Ingrid A van de Leemput
- Aquatic Ecology and Water Quality Management Group, Department of Environmental Sciences, Wageningen University, 6708, PB Wageningen, the Netherlands
| | - Milena Holmgren
- Wildlife Ecology and Conservation Group, Department of Environmental Sciences, Wageningen University, 6708, PB Wageningen, the Netherlands
| | - Marjolijn J A Christianen
- Aquatic Ecology and Water Quality Management Group, Department of Environmental Sciences, Wageningen University, 6708, PB Wageningen, the Netherlands
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Brodersen KE, Mosshammer M, Bittner MJ, Hallstrøm S, Santner J, Riemann L, Kühl M. Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs. Microbiol Spectr 2024; 12:e0333523. [PMID: 38426746 PMCID: PMC10986515 DOI: 10.1128/spectrum.03335-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 01/24/2024] [Indexed: 03/02/2024] Open
Abstract
Seagrasses can enhance nutrient mobilization in their rhizosphere via complex interactions with sediment redox conditions and microbial populations. Yet, limited knowledge exists on how seagrass-derived rhizosphere dynamics affect nitrogen cycling. Using optode and gel-sampler-based chemical imaging, we show that radial O2 loss (ROL) from rhizomes and roots leads to the formation of redox gradients around below-ground tissues of seagrass (Zostera marina), which are co-localized with regions of high ammonium concentrations in the rhizosphere. Combining such chemical imaging with fine-scale sampling for microbial community and gene expression analyses indicated that multiple biogeochemical pathways and microbial players can lead to high ammonium concentration within the oxidized regions of the seagrass rhizosphere. Symbiotic N2-fixing bacteria (Bradyrhizobium) were particularly abundant and expressed the diazotroph functional marker gene nifH in Z. marina rhizosphere areas with high ammonium concentrations. Such an association between Z. marina and Bradyrhizobium can facilitate ammonium mobilization, the preferred nitrogen source for seagrasses, enhancing seagrass productivity within nitrogen-limited environments. ROL also caused strong gradients of sulfide at anoxic/oxic interfaces in rhizosphere areas, where we found enhanced nifH transcription by sulfate-reducing bacteria. Furthermore, we found a high abundance of methylotrophic and sulfide-oxidizing bacteria in rhizosphere areas, where O2 was released from seagrass rhizomes and roots. These bacteria could play a beneficial role for the plants in terms of their methane and sulfide oxidation, as well as their formation of growth factors and phytohormones. ROL from below-ground tissues of seagrass, thus, seems crucial for ammonium production in the rhizosphere via stimulation of multiple diazotrophic associations. IMPORTANCE Seagrasses are important marine habitats providing several ecosystem services in coastal waters worldwide, such as enhancing marine biodiversity and mitigating climate change through efficient carbon sequestration. Notably, the fitness of seagrasses is affected by plant-microbe interactions. However, these microscale interactions are challenging to study and large knowledge gaps prevail. Our study shows that redox microgradients in the rhizosphere of seagrass select for a unique microbial community that can enhance the ammonium availability for seagrass. We provide first experimental evidence that Rhizobia, including the symbiotic N2-fixing bacteria Bradyrhizobium, can contribute to the bacterial ammonium production in the seagrass rhizosphere. The release of O2 from rhizomes and roots also caused gradients of sulfide in rhizosphere areas with enhanced nifH transcription by sulfate-reducing bacteria. O2 release from seagrass root systems thus seems crucial for ammonium production in the rhizosphere via stimulation of multiple diazotrophic associations.
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Affiliation(s)
| | - Maria Mosshammer
- Marine Biological Section, Department of Biology, University of Copenhagen, Helsingør, Denmark
| | - Meriel J. Bittner
- Marine Biological Section, Department of Biology, University of Copenhagen, Helsingør, Denmark
| | - Søren Hallstrøm
- Marine Biological Section, Department of Biology, University of Copenhagen, Helsingør, Denmark
| | - Jakob Santner
- Department of Crop Sciences, Institute of Agronomy, University of Natural Resources and Life Sciences Vienna, Tulln an der Donau, Austria
| | - Lasse Riemann
- Marine Biological Section, Department of Biology, University of Copenhagen, Helsingør, Denmark
| | - Michael Kühl
- Marine Biological Section, Department of Biology, University of Copenhagen, Helsingør, Denmark
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Masawa J, Winters G, Kaminer M, Szitenberg A, Gruntman M, Ashckenazi-Polivoda S. A matter of choice: Understanding the interactions between epiphytic foraminifera and their seagrass host Halophila stipulacea. MARINE ENVIRONMENTAL RESEARCH 2024; 196:106437. [PMID: 38479296 DOI: 10.1016/j.marenvres.2024.106437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 01/28/2024] [Accepted: 03/05/2024] [Indexed: 03/23/2024]
Abstract
In sub/tropical waters, benthic foraminifera are among the most abundant epiphytic organisms inhabiting seagrass meadows. This study explored the nature of the association between foraminifera and the tropical seagrass species H. stipulacea, aiming to determine whether these interactions are facilitative or random. For this, we performed a "choice" experiment, where foraminifera could colonize H. stipulacea plants or plastic "seagrasses" plants. At the end of the experiment, a microbiome analysis was performed to identify possible variances in the microbial community and diversity of the substrates. Results show that foraminifera prefer to colonize H. stipulacea, which had a higher abundance and diversity of foraminifera than plastic seagrass plants, which increased over time and with shoot age. Moreover, H. stipulacea leaves have higher epiphytic microbial community abundance and diversity. These results demonstrate that seagrass meadows are important hosts of the foraminifera community and suggest the potential facilitative effect of H. stipulacea on epiphytic foraminifera, which might be attributed to a greater diversity of the microbial community inhabiting H. stipulacea.
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Affiliation(s)
- Jenipher Masawa
- Dead Sea and Arava Science Center, Masada National Park, Mount Masada, 869100, Israel; School of Plant Sciences and Food Security, Porter School of the Environment and Earth Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Gidon Winters
- Dead Sea and Arava Science Center, Masada National Park, Mount Masada, 869100, Israel; Ben-Gurion University of the Negev, Eilat Campus, Eilat, 881000, Israel.
| | - Moran Kaminer
- Dead Sea and Arava Science Center, Masada National Park, Mount Masada, 869100, Israel
| | - Amir Szitenberg
- Dead Sea and Arava Science Center, Masada National Park, Mount Masada, 869100, Israel
| | - Michal Gruntman
- School of Plant Sciences and Food Security, Porter School of the Environment and Earth Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Sarit Ashckenazi-Polivoda
- Dead Sea and Arava Science Center, Masada National Park, Mount Masada, 869100, Israel; Ben-Gurion University of the Negev, Eilat Campus, Eilat, 881000, Israel.
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7
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Clements CS, Pratte ZA, Stewart FJ, Hay ME. Removal of detritivore sea cucumbers from reefs increases coral disease. Nat Commun 2024; 15:1338. [PMID: 38409274 PMCID: PMC10897328 DOI: 10.1038/s41467-024-45730-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 02/02/2024] [Indexed: 02/28/2024] Open
Abstract
Coral reefs are in global decline with coral diseases playing a significant role. This is especially true for Acroporid corals that represent ~25% of all Pacific coral species and generate much of the topographic complexity supporting reef biodiversity. Coral diseases are commonly sediment-associated and could be exacerbated by overharvest of sea cucumber detritivores that clean reef sediments and may suppress microbial pathogens as they feed. Here we show, via field manipulations in both French Polynesia and Palmyra Atoll, that historically overharvested sea cucumbers strongly suppress disease among corals in contact with benthic sediments. Sea cucumber removal increased tissue mortality of Acropora pulchra by ~370% and colony mortality by ~1500%. Additionally, farmerfish that kill Acropora pulchra bases to culture their algal gardens further suppress disease by separating corals from contact with the disease-causing sediment-functioning as mutualists rather than parasites despite killing coral bases. Historic overharvesting of sea cucumbers increases coral disease and threatens the persistence of tropical reefs. Enhancing sea cucumbers may enhance reef resilience by suppressing disease.
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Affiliation(s)
- Cody S Clements
- School of Biological Sciences and Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, GA, USA
| | - Zoe A Pratte
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA
| | - Frank J Stewart
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA
| | - Mark E Hay
- School of Biological Sciences and Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, GA, USA.
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8
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Godard RD, Wilson CM, Amstutz CG, Badawy N, Richardson B. Impacts of hurricanes and disease on Diadema antillarum in shallow water reef and mangrove locations in St John, USVI. PLoS One 2024; 19:e0297026. [PMID: 38359027 PMCID: PMC10868783 DOI: 10.1371/journal.pone.0297026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 12/26/2023] [Indexed: 02/17/2024] Open
Abstract
The 1983-1984 mortality event of the long-spined sea urchin Diadema antillarum reduced their population by up to 99% and was accompanied by a phase shift from coral dominated to algal dominated reefs in the Caribbean. Modest rebounds of D. antillarum populations in the Caribbean have been noted, and here we document the impacts of two major hurricanes (2017, Irma and Maria) and the 2022 disease outbreak on populations of D. antillarum found by targeted surveys in the urchin zone at nine fringing reef and three mangrove sites on St. John, USVI. D. antillarum populations at the reef sites had declined by 66% five months after the hurricanes but showed significant recovery just one year later. The impact of recent disease on these populations was much more profound, with all reef populations exhibiting a significant decline (96.4% overall). Fifteen months after the disease was first noted, D. antillarum at reef sites exhibited a modest yet significant recovery (15% pre-disease density). D. antillarum populations in mangrove sites were impacted by the hurricanes but exhibited much higher density than reef sites after the disease outbreak, suggesting that at D. antillarum in some locations may be less vulnerable to disease.
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Affiliation(s)
- Renee D. Godard
- Departments of Biology and Environmental Studies, Hollins University, Roanoke, Va, United States of America
| | - C. Morgan Wilson
- Departments of Biology and Environmental Studies, Hollins University, Roanoke, Va, United States of America
| | | | - Natalie Badawy
- Departments of Biology and Environmental Studies, Hollins University, Roanoke, Va, United States of America
| | - Brittany Richardson
- Departments of Biology and Environmental Studies, Hollins University, Roanoke, Va, United States of America
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9
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Welsh JE, Markovic M, van der Meer J, Thieltges DW. Non-linear effects of non-host diversity on the removal of free-living infective stages of parasites. Oecologia 2024; 204:339-349. [PMID: 38300256 PMCID: PMC10907414 DOI: 10.1007/s00442-023-05462-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2023] [Accepted: 09/26/2023] [Indexed: 02/02/2024]
Abstract
Among the ecological functions and services of biodiversity is the potential buffering of diseases through dilution effects where increased biodiversity results in a reduction in disease risk for humans and wildlife hosts. Whether such effects are a universal phenomenon is still under intense debate and diversity effects are little studied in cases when non-host organisms remove free-living parasite stages during their transmission from one host to the next by consumption or physical obstruction. Here, we investigated non-host diversity effects on the removal of cercarial stages of trematodes, ubiquitous parasites in aquatic ecosystems. In laboratory experiments using response surface designs, varying both diversity and density at same time, we compared three combinations of two non-hosts at four density levels: predatory crabs that actively remove cercariae from the water column via their mouth parts and gills, filter feeding oysters that passively filter cercariae from the water column while not becoming infected themselves, and seaweed which physically obstructs cercariae. The addition of a second non-host did not generally result in increased parasite removal but neutralised, amplified or reduced the parasite removal exerted by the first non-host, depending on the density and non-host combination. These non-linear non-host diversity effects were probably driven by intra- and interspecific interactions and suggest the need to integrate non-host diversity effects in understanding the links between community diversity and infection risk.
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Affiliation(s)
- Jennifer E Welsh
- Department of Coastal Systems, NIOZ Royal Netherlands Institute for Sea Research, PO Box 59, 1790 AB, Den Burg, The Netherlands
| | - Mirjana Markovic
- Department of Coastal Systems, NIOZ Royal Netherlands Institute for Sea Research, PO Box 59, 1790 AB, Den Burg, The Netherlands
| | - Jaap van der Meer
- Wageningen Marine Research, Korringaweg 7, 4401 NT, Yerseke, The Netherlands
- Aquaculture and Fisheries Group, Wageningen University and Research, Wageningen, The Netherlands
| | - David W Thieltges
- Department of Coastal Systems, NIOZ Royal Netherlands Institute for Sea Research, PO Box 59, 1790 AB, Den Burg, The Netherlands.
- Groningen Institute for Evolutionary Life-Sciences, GELIFES, University of Groningen, Nijenborgh 7, 9747 AG, Groningen, The Netherlands.
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10
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Ma X, Vanneste S, Chang J, Ambrosino L, Barry K, Bayer T, Bobrov AA, Boston L, Campbell JE, Chen H, Chiusano ML, Dattolo E, Grimwood J, He G, Jenkins J, Khachaturyan M, Marín-Guirao L, Mesterházy A, Muhd DD, Pazzaglia J, Plott C, Rajasekar S, Rombauts S, Ruocco M, Scott A, Tan MP, Van de Velde J, Vanholme B, Webber J, Wong LL, Yan M, Sung YY, Novikova P, Schmutz J, Reusch TBH, Procaccini G, Olsen JL, Van de Peer Y. Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. NATURE PLANTS 2024; 10:240-255. [PMID: 38278954 PMCID: PMC7615686 DOI: 10.1038/s41477-023-01608-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 12/05/2023] [Indexed: 01/28/2024]
Abstract
We present chromosome-level genome assemblies from representative species of three independently evolved seagrass lineages: Posidonia oceanica, Cymodocea nodosa, Thalassia testudinum and Zostera marina. We also include a draft genome of Potamogeton acutifolius, belonging to a freshwater sister lineage to Zosteraceae. All seagrass species share an ancient whole-genome triplication, while additional whole-genome duplications were uncovered for C. nodosa, Z. marina and P. acutifolius. Comparative analysis of selected gene families suggests that the transition from submerged-freshwater to submerged-marine environments mainly involved fine-tuning of multiple processes (such as osmoregulation, salinity, light capture, carbon acquisition and temperature) that all had to happen in parallel, probably explaining why adaptation to a marine lifestyle has been exceedingly rare. Major gene losses related to stomata, volatiles, defence and lignification are probably a consequence of the return to the sea rather than the cause of it. These new genomes will accelerate functional studies and solutions, as continuing losses of the 'savannahs of the sea' are of major concern in times of climate change and loss of biodiversity.
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Affiliation(s)
- Xiao Ma
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
| | - Steffen Vanneste
- Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Jiyang Chang
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
| | - Luca Ambrosino
- Department of Research Infrastructure for Marine Biological Resources, Stazione Zoologica Anton Dohrn, Naples, Italy
| | - Kerrie Barry
- DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Till Bayer
- Marine Evolutionary Ecology, GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Kiel, Germany
| | | | - LoriBeth Boston
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Justin E Campbell
- Coastlines and Oceans Division, Institute of Environment, Florida International University-Biscayne Bay Campus, Miami, FL, USA
| | - Hengchi Chen
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
| | - Maria Luisa Chiusano
- Department of Research Infrastructure for Marine Biological Resources, Stazione Zoologica Anton Dohrn, Naples, Italy
- Department of Agricultural Sciences, University Federico II of Naples, Naples, Italy
| | - Emanuela Dattolo
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy
- National Biodiversity Future Centre, Palermo, Italy
| | - Jane Grimwood
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Guifen He
- DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Jerry Jenkins
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Marina Khachaturyan
- Marine Evolutionary Ecology, GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Kiel, Germany
- Institute of General Microbiology, University of Kiel, Kiel, Germany
| | - Lázaro Marín-Guirao
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy
- Seagrass Ecology Group, Oceanographic Center of Murcia, Spanish Institute of Oceanography (IEO-CSIC), Murcia, Spain
| | - Attila Mesterházy
- Centre for Ecological Research, Wetland Ecology Research Group, Debrecen, Hungary
| | - Danish-Daniel Muhd
- Institute of Climate Adaptation and Marine Biotechnology, Universiti Malaysia Terengganu, Terengganu, Malaysia
| | - Jessica Pazzaglia
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy
- National Biodiversity Future Centre, Palermo, Italy
| | - Chris Plott
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | | | - Stephane Rombauts
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
| | - Miriam Ruocco
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Bologna, Italy
- Fano Marine Center, Fano, Italy
| | - Alison Scott
- Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Köln, Germany
| | - Min Pau Tan
- Institute of Climate Adaptation and Marine Biotechnology, Universiti Malaysia Terengganu, Terengganu, Malaysia
| | - Jozefien Van de Velde
- Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Köln, Germany
| | - Bartel Vanholme
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Ghent, Belgium
| | - Jenell Webber
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Li Lian Wong
- Institute of Climate Adaptation and Marine Biotechnology, Universiti Malaysia Terengganu, Terengganu, Malaysia
| | - Mi Yan
- DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Yeong Yik Sung
- Institute of Climate Adaptation and Marine Biotechnology, Universiti Malaysia Terengganu, Terengganu, Malaysia
| | - Polina Novikova
- Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Köln, Germany
| | - Jeremy Schmutz
- DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Thorsten B H Reusch
- Marine Evolutionary Ecology, GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Kiel, Germany.
| | - Gabriele Procaccini
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy.
- National Biodiversity Future Centre, Palermo, Italy.
| | - Jeanine L Olsen
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, the Netherlands.
| | - Yves Van de Peer
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
- Center for Plant Systems Biology, VIB, Ghent, Belgium.
- Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa.
- College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, China.
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11
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Tasdemir D, Scarpato S, Utermann-Thüsing C, Jensen T, Blümel M, Wenzel-Storjohann A, Welsch C, Echelmeyer VA. Epiphytic and endophytic microbiome of the seagrass Zostera marina: Do they contribute to pathogen reduction in seawater? THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168422. [PMID: 37956849 DOI: 10.1016/j.scitotenv.2023.168422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 10/27/2023] [Accepted: 11/06/2023] [Indexed: 11/15/2023]
Abstract
Seagrass meadows provide crucial ecosystem services for coastal environments and were shown to reduce the abundance of waterborne pathogens linked to infections in humans and marine organisms in their vicinity. Among potential drivers, seagrass phenolics released into seawater have been linked to pathogen suppression, but the potential involvement of the seagrass microbiome has not been investigated. We hypothesized that the microbiome of the eelgrass Zostera marina, especially the leaf epiphytes that are at direct interface between the seagrass host and the surrounding seawater, inhibit waterborne pathogens thereby contributing to their removal. Using a culture-dependent approach, we isolated 88 bacteria and fungi associated with the surfaces and inner tissues of the eelgrass leaves (healthy and decaying) and the roots. We assessed the antibiotic activity of microbial extracts against a large panel of common aquatic, human (fecal) and plant pathogens, and mined the metabolome of the most active extracts. The healthy leaf epibiotic bacteria, particularly Streptomyces sp. strain 131, displayed broad-spectrum antibiotic activity superior to some control drugs. Gram-negative bacteria abundant on healthy leaf surfaces, and few endosphere-associated bacteria and fungi also displayed remarkable activities. UPLC-MS/MS-based untargeted metabolomics analyses showed rich specialized metabolite repertoires with low annotation rates, indicating the presence of many undescribed antimicrobials in the extracts. This study contributes to our understanding on microbial and chemical ecology of seagrasses, implying potential involvement of the seagrass microbiome in suppression of pathogens in seawater. Such effect is beneficial for the health of ocean and human, especially in the context of climate change that is expected to exacerbate all infectious diseases. It may also assist future seagrass conservation and management strategies.
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Affiliation(s)
- Deniz Tasdemir
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel 24106, Germany; Faculty of Mathematics and Natural Sciences, Kiel University, Kiel 24118, Germany.
| | - Silvia Scarpato
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel 24106, Germany
| | - Caroline Utermann-Thüsing
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel 24106, Germany
| | - Timo Jensen
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel 24106, Germany
| | - Martina Blümel
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel 24106, Germany
| | - Arlette Wenzel-Storjohann
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel 24106, Germany
| | - Claudia Welsch
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel 24106, Germany
| | - Vivien Anne Echelmeyer
- GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel 24106, Germany
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12
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Trihatmoko E, Nurlinda N, Darussalam A, Purwitaningsih S, Sartohadi J, Banowati E, Naibaho BB, Husna VN, Juhadi J, Aji A. Preserving coastal ecosystem through micro-zonation analysis of Karimunjawa, Indonesia. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 196:88. [PMID: 38147264 DOI: 10.1007/s10661-023-12257-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 12/14/2023] [Indexed: 12/27/2023]
Abstract
Small island ecosystems and their inhabitants face a significant threat from global warming, jeopardizing their sustainability. These communities are particularly vulnerable to the impact of climate change, as they heavily rely on natural resources for their livelihoods and are more vulnerable than mainland regions. Therefore, it is essential to take urgent action to address the challenges small island states face and promote their resilience in the face of climate change. To preserve the coastal ecosystems in Karimunjawa Islands, Indonesia, this study proposes an alternative spatial plan through micro-zonation analysis. The study conducted literature reviews and field surveys to collect data and develop recommendations for the current spatial plans through spatial, descriptive statistics, and comparative analysis. The findings show that the sea surface temperatures of Karimunjawa and Kemujan Island have increased by 1-2 ℃. Stress levels were found for coral reefs at the bleaching warning position for all Karimunjawa Island marine areas, including Kemujan Island. Legon Lele and Tanjung Gelam were found to have suspended sediment traces and indications of heavy metal contamination, making them the research focus. The Karimunjawa micro-zonation boundaries were obtained, especially in the Legon Lele and Tanjung Gelam areas, with an area of 640.63 and 817.45 ha, respectively. The proposed micro-zonation for Karimunjawa National Park refers to watershed-sedimentary cells, making it an example of implementing integrated coastal management (ICM) spatial boundaries in Karimunjawa and other nations. By applying this micro-zonation, coastal ecosystem rehabilitation efforts can be carried out precisely.
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Affiliation(s)
- Edy Trihatmoko
- Department of Soil, Universitas Gadjah Mada, Flora, Sleman, 55281, Indonesia.
- Research Center for Land Resources Management, Universitas Gadjah Mada, Kolombo Karang Malang, Sleman, 55281, Indonesia.
| | - Nurlinda Nurlinda
- Department of Geography, Universitas Negeri Semarang, Semarang, 50229, Indonesia
| | - Andi Darussalam
- Department of Geography, Universitas Negeri Semarang, Semarang, 50229, Indonesia
| | - Santika Purwitaningsih
- Research Center for Land Resources Management, Universitas Gadjah Mada, Kolombo Karang Malang, Sleman, 55281, Indonesia
| | - Junun Sartohadi
- Department of Soil, Universitas Gadjah Mada, Flora, Sleman, 55281, Indonesia
- Research Center for Land Resources Management, Universitas Gadjah Mada, Kolombo Karang Malang, Sleman, 55281, Indonesia
| | - Eva Banowati
- Department of Geography, Universitas Negeri Semarang, Semarang, 50229, Indonesia
| | | | - Vina Nurul Husna
- Department of Geography, Universitas Negeri Semarang, Semarang, 50229, Indonesia
| | - Juhadi Juhadi
- Department of Geography, Universitas Negeri Semarang, Semarang, 50229, Indonesia
| | - Ananto Aji
- Department of Geography, Universitas Negeri Semarang, Semarang, 50229, Indonesia
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13
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Waidner LA, Potdukhe TV. Tools to Enumerate and Predict Distribution Patterns of Environmental Vibrio vulnificus and Vibrio parahaemolyticus. Microorganisms 2023; 11:2502. [PMID: 37894160 PMCID: PMC10609196 DOI: 10.3390/microorganisms11102502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 09/28/2023] [Accepted: 10/03/2023] [Indexed: 10/29/2023] Open
Abstract
Vibrio vulnificus (Vv) and Vibrio parahaemolyticus (Vp) are water- and foodborne bacteria that can cause several distinct human diseases, collectively called vibriosis. The success of oyster aquaculture is negatively impacted by high Vibrio abundances. Myriad environmental factors affect the distribution of pathogenic Vibrio, including temperature, salinity, eutrophication, extreme weather events, and plankton loads, including harmful algal blooms. In this paper, we synthesize the current understanding of ecological drivers of Vv and Vp and provide a summary of various tools used to enumerate Vv and Vp in a variety of environments and environmental samples. We also highlight the limitations and benefits of each of the measurement tools and propose example alternative tools for more specific enumeration of pathogenic Vv and Vp. Improvement of molecular methods can tighten better predictive models that are potentially important for mitigation in more controlled environments such as aquaculture.
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Affiliation(s)
- Lisa A. Waidner
- Hal Marcus College of Science and Engineering, University of West Florida, 11000 University Pkwy, Building 58, Room 108, Pensacola, FL 32514, USA
| | - Trupti V. Potdukhe
- GEMS Program, College of Medicine, University of Illinois Chicago, 1853 W. Polk St., Chicago, IL 60612, USA;
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14
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Tol SJ, Carter AB, York PH, Jarvis JC, Grech A, Congdon BC, Coles RG. Vegetative fragment production as a means of propagule dispersal for tropical seagrass meadows. MARINE ENVIRONMENTAL RESEARCH 2023; 191:106160. [PMID: 37678099 DOI: 10.1016/j.marenvres.2023.106160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2023] [Revised: 08/21/2023] [Accepted: 08/30/2023] [Indexed: 09/09/2023]
Abstract
BACKGROUND AND AIMS Long distance dispersal (LDD) contributes to the replenishment and recovery of tropical seagrass habitats exposed to disturbance, such as cyclones and infrastructure development. However, our current knowledge regarding the physical attributes of seagrass fragments that influence LDD predominantly stems from temperate species and regions. The goal of this paper is to measure seagrass fragment density and viability in two tropical species, assessing various factors influencing their distribution. METHODS We measured the density and viability of floating seagrass fragments for two tropical seagrass species (Zostera muelleri and Halodule uninervis) in two coastal seagrass meadows in the central Great Barrier Reef World Heritage Area, Australia. We assessed the effect of wind speed, wind direction, seagrass growing/senescent season, seagrass meadow density, meadow location and dugong foraging intensity on fragment density. We also measured seagrass fragment structure and fragment viability; i.e., potential to establish into a new plant. KEY RESULTS We found that seagrass meadow density, season, wind direction and wind speed influenced total fragment density, while season and wind speed influenced the density of viable fragments. Dugong foraging intensity did not influence fragment density. Our results indicate that wave action from winds combined with high seagrass meadow density increases seagrass fragment creation, and that more fragments are produced during the growing than the senescent season. Seagrass fragments classified as viable for Z. muelleri and H. uninervis had significantly more shoots and leaves than non-viable fragments. We collected 0.63 (±0.08 SE) floating viable fragments 100 m-2 in the growing season, and 0.13 (±0.03 SE) viable fragments 100 m-2 in the senescent season. Over a third (38%) of all fragments collected were viable. CONCLUSION There is likely to be a large number of viable seagrass fragments available for long distance dispersal. This study's outputs can inform dispersal and connectivity models that are used to direct seagrass ecosystem management and conservation strategies.
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Affiliation(s)
- S J Tol
- Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), James Cook University, Cairns, Australia; College of Science and Engineering, James Cook University, Cairns, Australia.
| | - A B Carter
- Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), James Cook University, Cairns, Australia
| | - P H York
- Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), James Cook University, Cairns, Australia
| | - J C Jarvis
- University of North Carolina Wilmington, USA
| | - A Grech
- ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Australia
| | - B C Congdon
- College of Science and Engineering, James Cook University, Cairns, Australia
| | - R G Coles
- Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), James Cook University, Cairns, Australia
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15
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Kalvaitienė G, Vaičiūtė D, Bučas M, Gyraitė G, Kataržytė M. Macrophytes and their wrack as a habitat for faecal indicator bacteria and Vibrio in coastal marine environments. MARINE POLLUTION BULLETIN 2023; 194:115325. [PMID: 37523954 DOI: 10.1016/j.marpolbul.2023.115325] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 07/17/2023] [Accepted: 07/18/2023] [Indexed: 08/02/2023]
Abstract
Waterborne pathogenic bacteria, including faecal indicator bacteria and potentially pathogenic Vibrio, are a global concern for diseases transmitted through water. A systematic review was conducted to analyse publications that investigated these bacteria in relation to macrophytes (seagrasses and macroalgae) in coastal marine environments. The highest quantities of FIB were found on brown algae and seagrasses, and the highest quantities of Vibrio bacteria were on red algae. The most extensively studied macrophyte group was brown algae, green algae were the least researched. Macrophyte wrack was found to favor the presence of FIB, but there is a lack of information about Vibrio quantities in this environment. To understand the role of Vibrio bacteria that are pathogenic to humans, molecular methods complementary to cultivation methods should be used. Further research is needed to understand the underlying mechanisms of FIB and potentially pathogenic Vibrio with macrophytes and their microbiome in the coastal marine environment.
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Affiliation(s)
- Greta Kalvaitienė
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
| | - Diana Vaičiūtė
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
| | - Martynas Bučas
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
| | - Greta Gyraitė
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
| | - Marija Kataržytė
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
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16
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Nguyen HM, Ruocco M, Dattolo E, Cassetti FP, Calvo S, Tomasello A, Marín-Guirao L, Pernice M, Procaccini G. Signs of local adaptation by genetic selection and isolation promoted by extreme temperature and salinity in the Mediterranean seagrass Posidonia oceanica. Mol Ecol 2023; 32:4313-4328. [PMID: 37271924 DOI: 10.1111/mec.17032] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 05/10/2023] [Accepted: 05/17/2023] [Indexed: 06/06/2023]
Abstract
Adaptation to local conditions is known to occur in seagrasses; however, knowledge of the genetic basis underlying this phenomenon remains scarce. Here, we analysed Posidonia oceanica from six sites within and around the Stagnone di Marsala, a semi-enclosed coastal lagoon where salinity and temperature exceed the generally described tolerance thresholds of the species. Sea surface temperatures (SSTs) were measured and plant samples were collected for the assessment of morphology, flowering rate and for screening genome-wide polymorphisms using double digest restriction-site-associated DNA sequencing. Results demonstrated more extreme SSTs and salinity levels inside the lagoon than the outer lagoon regions. Morphological results showed significantly fewer and shorter leaves and reduced rhizome growth of P. oceanica from the inner lagoon and past flowering events were recorded only for a meadow farthest away from the lagoon. Using an array of 51,329 single nucleotide polymorphisms, we revealed a clear genetic structure among the study sites and confirmed the genetic isolation and high clonality of the innermost site. In all, 14 outlier loci were identified and annotated with several proteins including those relate to plant stress response, protein transport and regulators of plant-specific developmental events. Especially, five outlier loci showed maximum allele frequency at the innermost site, likely reflecting adaptation to the extreme temperature and salinity regimes, possibly due to the selection of more resistant genotypes and the progressive restriction of gene flow. Overall, this study helps us to disentangle the genetic basis of seagrass adaptation to local environmental conditions and may support future works on assisted evolution in seagrasses.
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Affiliation(s)
| | | | | | | | - Sebastiano Calvo
- Dipartimento di Scienze della Terra e del Mare, Università di Palermo, Palermo, Italy
| | - Agostino Tomasello
- Dipartimento di Scienze della Terra e del Mare, Università di Palermo, Palermo, Italy
| | - Lázaro Marín-Guirao
- Stazione Zoologica Anton Dohrn, Napoli, Italy
- Oceanographic Center of Murcia, Seagrass Ecology Group, Spanish Institute of Oceanography (IEO-CSIC), Murcia, Spain
| | - Mathieu Pernice
- Faculty of Science, Climate Change Cluster (C3), University of Technology Sydney, Ultimo, New South Wales, Australia
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17
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Arkema KK, Delevaux JMS, Silver JM, Winder SG, Schile-Beers LM, Bood N, Crooks S, Douthwaite K, Durham C, Hawthorne PL, Hickey T, Mattis C, Rosado A, Ruckelshaus M, von Unger M, Young A. Evidence-based target setting informs blue carbon strategies for nationally determined contributions. Nat Ecol Evol 2023; 7:1045-1059. [PMID: 37264198 PMCID: PMC10333125 DOI: 10.1038/s41559-023-02081-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2022] [Accepted: 04/25/2023] [Indexed: 06/03/2023]
Abstract
The magnitude and pace of global climate change demand ambitious and effective implementation of nationally determined contributions (NDCs). Nature-based solutions present an efficient approach to achieving mitigation, adaptation and resilience goals. Yet few nations have quantified the diverse benefits of nature-based solutions to evaluate and select ecosystem targets for their NDCs. Here we report on Belize's pursuit of innovative, evidence-based target setting by accounting for multiple benefits of blue carbon strategies. Through quantification of carbon storage and sequestration and optimization of co-benefits, we explore time-bound targets and prioritize locations for mangrove protection and restoration. We find increases in carbon benefits with larger mangrove investments, while fisheries, tourism and coastal risk-reduction co-benefits grow initially and then plateau. We identify locations, currently lacking protected status, where prioritizing blue carbon strategies would provide the greatest delivery of co-benefits to communities. These findings informed Belize's updated NDCs to include an additional 12,000 ha of mangrove protection and 4,000 ha of mangrove restoration, respectively, by 2030. Our study serves as an example for the more than 150 other countries that have the opportunity to enhance greenhouse gas sequestration and climate adaptation by incorporating blue carbon strategies that provide multiple societal benefits into their NDCs.
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Affiliation(s)
- Katie K Arkema
- Natural Capital Project, Stanford University, Stanford, CA, USA.
- School of Marine and Environmental Affairs, University of Washington, Seattle, WA, USA.
- Pacific Northwest National Laboratory, Seattle, WA, USA.
| | | | - Jessica M Silver
- Natural Capital Project, Stanford University, Stanford, CA, USA
- School of Environmental and Forest Sciences, University of Washington, Seattle, WA, USA
| | - Samantha G Winder
- Natural Capital Project, Stanford University, Stanford, CA, USA
- Outdoor Recreation and Data Lab, University of Washington, Seattle, WA, USA
| | | | - Nadia Bood
- World Wildlife Fund Mesoamerica, Belize Field Office, Belize City, Belize
| | | | | | | | - Peter L Hawthorne
- Institute on the Environment, University of Minnesota, Saint Paul, MN, USA
| | | | - Colin Mattis
- National Climate Change Office, Belmopan, Belize
| | - Andria Rosado
- Coastal Zone Management Authority and Institute, Belize City, Belize
| | - Mary Ruckelshaus
- Natural Capital Project, Stanford University, Stanford, CA, USA
- School of Environmental and Forest Sciences, University of Washington, Seattle, WA, USA
| | | | - Arlene Young
- Coastal Zone Management Authority and Institute, Belize City, Belize
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18
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Bass AL, Bateman AW, Kaukinen KH, Li S, Ming T, Patterson DA, Hinch SG, Miller KM. The spatial distribution of infectious agents in wild Pacific salmon along the British Columbia coast. Sci Rep 2023; 13:5473. [PMID: 37016008 PMCID: PMC10071257 DOI: 10.1038/s41598-023-32583-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 03/29/2023] [Indexed: 04/06/2023] Open
Abstract
Although infectious agents can act as strong population regulators, knowledge of their spatial distributions in wild Pacific salmon is limited, especially in the marine environment. Characterizing pathogen distributions during early marine residence, a period considered a survival bottleneck for Pacific salmon, may reveal where salmon populations are exposed to potentially detrimental pathogens. Using high-throughput qPCR, we determined the prevalence of 56 infectious agents in 5719 Chinook, 2032 Coho and 4062 Sockeye salmon, sampled between 2008 and 2018, in their first year of marine residence along coastal Western Canada. We identified high prevalence clusters, which often shifted geographically with season, for most of the 41 detected agents. A high density of infection clusters was found in the Salish Sea along the east coast of Vancouver Island, an important migration route and residence area for many salmon populations, some experiencing chronically poor marine survival. Maps for each infectious agent taxa showing clusters across all host species are provided. Our novel documentation of salmon pathogen distributions in the marine environment contributes to the ecological knowledge regarding some lesser known pathogens, identifies salmon populations potentially impacted by specific pathogens, and pinpoints priority locations for future research and remediation.
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Affiliation(s)
- Arthur L Bass
- Forest and Conservation Sciences, University of British Columbia, Vancouver, V6T 1Z4, Canada.
| | - Andrew W Bateman
- Pacific Salmon Foundation, Vancouver, V6J 4S6, Canada
- Ecology and Evolutionary Biology, University of Toronto, Toronto, M5S 1A1, Canada
| | - Karia H Kaukinen
- Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, V9T 6N7, Canada
| | - Shaorong Li
- Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, V9T 6N7, Canada
| | - Tobi Ming
- Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, V9T 6N7, Canada
| | - David A Patterson
- Fisheries and Oceans Canada, Science Branch, Pacific Region, School of Resource and Environmental Management, Simon Fraser University, Burnaby, V5A 1S6, Canada
| | - Scott G Hinch
- Forest and Conservation Sciences, University of British Columbia, Vancouver, V6T 1Z4, Canada
| | - Kristina M Miller
- Forest and Conservation Sciences, University of British Columbia, Vancouver, V6T 1Z4, Canada
- Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, V9T 6N7, Canada
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19
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Miyamoto H, Kawachi N, Kurotani A, Moriya S, Suda W, Suzuki K, Matsuura M, Tsuji N, Nakaguma T, Ishii C, Tsuboi A, Shindo C, Kato T, Udagawa M, Satoh T, Wada S, Masuya H, Miyamoto H, Ohno H, Kikuchi J. Computational estimation of sediment symbiotic bacterial structures of seagrasses overgrowing downstream of onshore aquaculture. ENVIRONMENTAL RESEARCH 2023; 219:115130. [PMID: 36563976 DOI: 10.1016/j.envres.2022.115130] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Revised: 12/14/2022] [Accepted: 12/18/2022] [Indexed: 05/02/2023]
Abstract
Coastal seagrass meadows are essential in blue carbon and aquatic ecosystem services. However, this ecosystem has suffered severe eutrophication and destruction due to the expansion of aquaculture. Therefore, methods for the flourishing of seagrass are still being explored. Here, data from 49 public coastal surveys on the distribution of seagrass and seaweed around the onshore aquaculture facilities are revalidated, and an exceptional area where the seagrass Zostera marina thrives was found near the shore downstream of the onshore aquaculture facility. To evaluate the characteristics of the sediment for growing seagrass, physicochemical properties and bacterial ecological evaluations of the sediment were conducted. Evaluation of chemical properties in seagrass sediments confirmed a significant increase in total carbon and a decrease in zinc content. Association analysis and linear discriminant analysis refined bacterial candidates specified in seagrass overgrown- and nonovergrown-sediment. Energy landscape analysis indicated that the symbiotic bacterial groups of seagrass sediment were strongly affected by the distance close to the seagrass-growing aquaculture facility despite their bacterial population appearing to fluctuate seasonally. The bacterial population there showed an apparent decrease in the pathogen candidates belonging to the order Flavobacteriales. Moreover, structure equation modeling and a linear non-Gaussian acyclic model based on the machine learning data estimated an optimal sediment symbiotic bacterial group candidate for seagrass growth as follows: the Lachnospiraceae and Ruminococcaceae families as gut-inhabitant bacteria, Rhodobacteraceae as photosynthetic bacteria, and Desulfobulbaceae as cable bacteria modulating oxygen or nitrate reduction and oxidation of sulfide. These observations confer a novel perspective on the sediment symbiotic bacterial structures critical for blue carbon and low-pathogenic marine ecosystems in aquaculture.
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Affiliation(s)
- Hirokuni Miyamoto
- Graduate School of Horticulture, Chiba University: Matsudo, Chiba, 271-8501, Japan; RIKEN Center for Integrated Medical Science, Yokohama, Kanagawa, 230-0045, Japan; Japan Eco-science (Nikkan Kagaku) Co. Ltd.: Chiba, Chiba, 263-8522, Japan; Sermas Co., Ltd.: Ichikawa, Chiba, 272-0033, Japan.
| | | | - Atsushi Kurotani
- Research Center for Agricultural Information Technology, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, 305-0856, Japan
| | - Shigeharu Moriya
- RIKEN, Center for Advanced Photonics, Wako, Saitama, 351-0198, Japan
| | - Wataru Suda
- RIKEN Center for Integrated Medical Science, Yokohama, Kanagawa, 230-0045, Japan
| | - Kenta Suzuki
- RIKEN, BioResource Research Center, Tsukuba, Ibaraki, 305-0074, Japan
| | - Makiko Matsuura
- Graduate School of Horticulture, Chiba University: Matsudo, Chiba, 271-8501, Japan; Sermas Co., Ltd.: Ichikawa, Chiba, 272-0033, Japan
| | - Naoko Tsuji
- Sermas Co., Ltd.: Ichikawa, Chiba, 272-0033, Japan
| | - Teruno Nakaguma
- Graduate School of Horticulture, Chiba University: Matsudo, Chiba, 271-8501, Japan; Japan Eco-science (Nikkan Kagaku) Co. Ltd.: Chiba, Chiba, 263-8522, Japan; Sermas Co., Ltd.: Ichikawa, Chiba, 272-0033, Japan
| | - Chitose Ishii
- RIKEN Center for Integrated Medical Science, Yokohama, Kanagawa, 230-0045, Japan; Sermas Co., Ltd.: Ichikawa, Chiba, 272-0033, Japan
| | - Arisa Tsuboi
- Japan Eco-science (Nikkan Kagaku) Co. Ltd.: Chiba, Chiba, 263-8522, Japan
| | - Chie Shindo
- Research Center for Agricultural Information Technology, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, 305-0856, Japan
| | - Tamotsu Kato
- RIKEN Center for Integrated Medical Science, Yokohama, Kanagawa, 230-0045, Japan
| | - Motoaki Udagawa
- Keiyo Gas Energy Solution Co. Ltd.: Ichikawa, Chiba, 272-0033, Japan
| | - Takashi Satoh
- Division of Hematology, Kitasato University School of Allied Health Sciences, Sagamihara, Kanagawa, 252-0329, Japan
| | - Satoshi Wada
- RIKEN, Center for Advanced Photonics, Wako, Saitama, 351-0198, Japan
| | - Hiroshi Masuya
- RIKEN, BioResource Research Center, Tsukuba, Ibaraki, 305-0074, Japan
| | - Hisashi Miyamoto
- Sermas Co., Ltd.: Ichikawa, Chiba, 272-0033, Japan; Miroku Co.Ltd.: Kitsuki, Oita, 873-0021, Japan
| | - Hiroshi Ohno
- RIKEN Center for Integrated Medical Science, Yokohama, Kanagawa, 230-0045, Japan
| | - Jun Kikuchi
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan.
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20
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El Zrelli R, Hcine A, Yacoubi L, Roa-Ureta RH, Gallai N, Castet S, Grégoire M, Courjault-Radé P, Rabaoui LJ. Economic losses related to the reduction of Posidonia ecosystem services in the Gulf of Gabes (Southern Mediterranean Sea). MARINE POLLUTION BULLETIN 2023; 186:114418. [PMID: 36462419 DOI: 10.1016/j.marpolbul.2022.114418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 11/15/2022] [Accepted: 11/23/2022] [Indexed: 06/17/2023]
Abstract
In the early XXth century, the Gulf of Gabes in SE Tunisia used to host the most extended Posidonia oceanica seagrass beds in the Mediterranean basin and was a highly productive hotspot of benthic species. Since the 70's, >500 million t of wet toxic phosphogypsum discharges from a fertilizer industrial complex have led to the gradual loss of ∼90 % of its initial surface. This drastic shrinkage is accompanied by significant value losses originated from the direct and indirect-use services of which the most important ones are small scale fisheries and carbon storage function. Using market valuations of a number of services we estimate economic losses at 105 million € in 2014 (∼915€/ha), i.e., around 115 % of the added value of the gabesian fertilizer factories for the same year. Value losses should increase in the near future in relation with the COP26 agreements which boosted the open carbon credit market. Without actions to reduce negative production externalities caused by the fertilizer industry in the Gulf of Gabes it would not be possible to recover Posidonia ecosystems in this region leading to further economic, ecologic, and cultural losses.
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Affiliation(s)
- Radhouan El Zrelli
- SADEF Agronomy & Environment, 30 Rue de la Station, 68700 Aspach-le-Bas, France.
| | - Ahlem Hcine
- University of Sfax, Faculty of Economics and Management of Sfax, Research Laboratory in Competitiveness, Commercial Decisions and Internationalisation (CODECI), Sfax, Tunisia
| | - Lamia Yacoubi
- University of Tunis El Manar, Faculty of Science of Tunis, Laboratory of Biodiversity and Parasitology of Aquatic Ecosystems (LR18ES05), University Campus, 2092 Tunis, Tunisia
| | | | - Nicola Gallai
- LEREPS, ENFA, Université Fédérale Toulouse Midi-Pyrénées, Toulouse Cedex F31042, France
| | - Sylvie Castet
- Géosciences Environnement Toulouse (GET), Université de Toulouse, UMR 5563 CNRS/UPS/IRD/CNES, 14 Avenue Edouard Belin, 31400 Toulouse, France
| | - Michel Grégoire
- Géosciences Environnement Toulouse (GET), Université de Toulouse, UMR 5563 CNRS/UPS/IRD/CNES, 14 Avenue Edouard Belin, 31400 Toulouse, France
| | - Pierre Courjault-Radé
- Géosciences Environnement Toulouse (GET), Université de Toulouse, UMR 5563 CNRS/UPS/IRD/CNES, 14 Avenue Edouard Belin, 31400 Toulouse, France
| | - Lotfi Jilani Rabaoui
- University of Tunis El Manar, Faculty of Science of Tunis, Laboratory of Biodiversity and Parasitology of Aquatic Ecosystems (LR18ES05), University Campus, 2092 Tunis, Tunisia; National Center for Wildlife, Riyadh, Saudi Arabia
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21
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Losciale R, Day J, Heron S. Conservation status, research, and knowledge of seagrass habitats in World Heritage properties. CONSERVATION SCIENCE AND PRACTICE 2022. [DOI: 10.1111/csp2.12830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Affiliation(s)
| | - Jon Day
- James Cook University Douglas Queensland Australia
| | - Scott Heron
- James Cook University Douglas Queensland Australia
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22
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Nguyen XV, Phan TTH, Cao VL, Nguyen Nhat NT, Nguyen TH, Nguyen XT, Lau VK, Hoang CT, Nguyen-Thi MN, Nguyen HM, Dao VH, Teichberg M, Papenbrock J. Current advances in seagrass research: A review from Viet Nam. FRONTIERS IN PLANT SCIENCE 2022; 13:991865. [PMID: 36299785 PMCID: PMC9589349 DOI: 10.3389/fpls.2022.991865] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Accepted: 09/16/2022] [Indexed: 06/16/2023]
Abstract
Seagrass meadows provide valuable ecosystem services but are fragile and threatened ecosystems all over the world. This review highlights the current advances in seagrass research from Viet Nam. One goal is to support decision makers in developing science-based conservation strategies. In recent years, several techniques were applied to estimate the size of seagrass meadows. Independent from the method used, there is an alarming decline in the seagrass area in almost all parts of Viet Nam. Since 1990, a decline of 46.5% or 13,549 ha was found. Only in a few protected and difficult-to-reach areas was an increase observed. Conditions at those sites could be investigated in more detail to make suggestions for conservation and recovery of seagrass meadows. Due to their lifestyle and morphology, seagrasses take up compounds from their environment easily. Phytoremediation processes of Thalassia hemprichii and Enhalus acoroides are described exemplarily. High accumulation of heavy metals dependent on their concentration in the environment in different organs can be observed. On the one hand, seagrasses play a role in phytoremediation processes in polluted areas; on the other hand, they might suffer at high concentrations, and pollution will contribute to their overall decline. Compared with the neighboring countries, the total C org stock from seagrass beds in Viet Nam was much lower than in the Philippines and Indonesia but higher than that of Malaysia and Myanmar. Due to an exceptionally long latitudinal coastline of 3,260 km covering cool to warm water environments, the seagrass species composition in Viet Nam shows a high diversity and a high plasticity within species boundaries. This leads to challenges in taxonomic issues, especially with the Halophila genus, which can be better deduced from genetic diversity/population structures of members of Hydrocharitaceae. Finally, the current seagrass conservation and management efforts in Viet Nam are presented and discussed. Only decisions based on the interdisciplinary cooperation of scientists from all disciplines mentioned will finally lead to conserve this valuable ecosystem for mankind and biodiversity.
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Affiliation(s)
- Xuan-Vy Nguyen
- Institute of Oceanography, Viet Nam Academy of Science and Technology, Nha Trang, Vietnam
- Faculty of Marine Science and Technology, Graduate University of Science and Technology, Ha Noi, Vietnam
| | | | - Van-Luong Cao
- Faculty of Marine Science and Technology, Graduate University of Science and Technology, Ha Noi, Vietnam
- Institute of Marine Environment and Resources, Viet Nam Academy of Science and Technology, Hai Phong, Vietnam
| | - Nhu-Thuy Nguyen Nhat
- Institute of Oceanography, Viet Nam Academy of Science and Technology, Nha Trang, Vietnam
| | - Trung-Hieu Nguyen
- Institute of Oceanography, Viet Nam Academy of Science and Technology, Nha Trang, Vietnam
| | - Xuan-Thuy Nguyen
- Institute of Oceanography, Viet Nam Academy of Science and Technology, Nha Trang, Vietnam
| | - Va-Khin Lau
- Institute of Oceanography, Viet Nam Academy of Science and Technology, Nha Trang, Vietnam
| | | | - My-Ngan Nguyen-Thi
- Institute of Oceanography, Viet Nam Academy of Science and Technology, Nha Trang, Vietnam
| | - Hung Manh Nguyen
- Dead Sea and Arava Science Center, Central Arava Branch, Hatseva, Israel
- French Associates Institute for Agriculture and Biotechnology of Dryland, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion, Israel
| | - Viet-Ha Dao
- Institute of Oceanography, Viet Nam Academy of Science and Technology, Nha Trang, Vietnam
- Faculty of Marine Science and Technology, Graduate University of Science and Technology, Ha Noi, Vietnam
| | - Mirta Teichberg
- Ecosystems Center, Marine Biological Laboratory (MBL), Woodshole, MA, United States
| | - Jutta Papenbrock
- Institute of Botany, Leibniz University Hannover, Hannover, Germany
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23
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Banister RB, Schwarz MT, Fine M, Ritchie KB, Muller EM. Instability and Stasis Among the Microbiome of Seagrass Leaves, Roots and Rhizomes, and Nearby Sediments Within a Natural pH Gradient. MICROBIAL ECOLOGY 2022; 84:703-716. [PMID: 34596709 PMCID: PMC9622545 DOI: 10.1007/s00248-021-01867-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Accepted: 09/10/2021] [Indexed: 05/10/2023]
Abstract
Seagrass meadows are hotspots of biodiversity with considerable economic and ecological value. The health of seagrass ecosystems is influenced in part by the makeup and stability of their microbiome, but microbiome composition can be sensitive to environmental change such as nutrient availability, elevated temperatures, and reduced pH. The objective of the present study was to characterize the bacterial community of the leaves, bulk samples of roots and rhizomes, and proximal sediment of the seagrass species Cymodocea nodosa along the natural pH gradient of Levante Bay, Vulcano Island, Italy. The bacterial community was determined by characterizing the 16S rRNA amplicon sequencing and analyzing the operational taxonomic unit classification of bacterial DNA within samples. Statistical analyses were used to explore how life-long exposure to different pH/pCO2 conditions may be associated with significant differences in microbial communities, dominant bacterial classes, and microbial diversity within each plant section and sediment. The microbiome of C. nodosa significantly differed among all sample types and site-specific differences were detected within sediment and root/rhizome microbial communities, but not the leaves. These results show that C. nodosa leaves have a consistent microbial community even across a pH range of 8.15 to 6.05. The ability for C. nodosa to regulate and maintain microbial structure may indicate a semblance of resilience within these vital ecosystems under projected changes in environmental conditions such as ocean acidification.
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Affiliation(s)
- Raymond B Banister
- Mote Marine Laboratory, Coral Health and Disease Program, Sarasota, FL, USA.
- Institute for Global Ecology, Florida Institute of Technology, 150, W University Blvd, Melbourne, FL, 32901, USA.
| | - Melbert T Schwarz
- Mote Marine Laboratory, Coral Health and Disease Program, Sarasota, FL, USA
| | - Maoz Fine
- The Goodman Faculty of Life Sciences, Bar-Ilan University, 52900, Ramat Gan, Israel
- The Interuniversity Institute for Marine Science, P.O.B. 469, 88103, Eilat, Israel
| | - Kim B Ritchie
- Department of Natural Sciences, University of South Carolina Beaufort, 801, Carteret St., Beaufort, SC, 29906, USA
| | - Erinn M Muller
- Mote Marine Laboratory, Coral Health and Disease Program, Sarasota, FL, USA
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24
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Glidden CK, Field LC, Bachhuber S, Hennessey SM, Cates R, Cohen L, Crockett E, Degnin M, Feezell MK, Fulton‐Bennett HK, Pires D, Poirson BN, Randell ZH, White E, Gravem SA. Strategies for managing marine disease. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2022; 32:e2643. [PMID: 35470930 PMCID: PMC9786832 DOI: 10.1002/eap.2643] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Accepted: 02/24/2022] [Indexed: 06/14/2023]
Abstract
The incidence of emerging infectious diseases (EIDs) has increased in wildlife populations in recent years and is expected to continue to increase with global environmental change. Marine diseases are relatively understudied compared with terrestrial diseases but warrant parallel attention as they can disrupt ecosystems, cause economic loss, and threaten human livelihoods. Although there are many existing tools to combat the direct and indirect consequences of EIDs, these management strategies are often insufficient or ineffective in marine habitats compared with their terrestrial counterparts, often due to fundamental differences between marine and terrestrial systems. Here, we first illustrate how the marine environment and marine organism life histories present challenges and opportunities for wildlife disease management. We then assess the application of common disease management strategies to marine versus terrestrial systems to identify those that may be most effective for marine disease outbreak prevention, response, and recovery. Finally, we recommend multiple actions that will enable more successful management of marine wildlife disease emergencies in the future. These include prioritizing marine disease research and understanding its links to climate change, improving marine ecosystem health, forming better monitoring and response networks, developing marine veterinary medicine programs, and enacting policy that addresses marine and other wildlife diseases. Overall, we encourage a more proactive rather than reactive approach to marine wildlife disease management and emphasize that multidisciplinary collaborations are crucial to managing marine wildlife health.
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Affiliation(s)
- Caroline K. Glidden
- Department of Integrative BiologyOregon State UniversityCorvallisOregonUSA
- Present address:
Department of BiologyStanford UniversityStanfordCaliforniaUSA
| | - Laurel C. Field
- Department of Integrative BiologyOregon State UniversityCorvallisOregonUSA
| | - Silke Bachhuber
- Department of Integrative BiologyOregon State UniversityCorvallisOregonUSA
| | | | - Robyn Cates
- College of Veterinary MedicineOregon State UniversityCorvallisOregonUSA
| | - Lesley Cohen
- College of Veterinary MedicineOregon State UniversityCorvallisOregonUSA
| | - Elin Crockett
- College of Veterinary MedicineOregon State UniversityCorvallisOregonUSA
| | - Michelle Degnin
- College of Veterinary MedicineOregon State UniversityCorvallisOregonUSA
| | - Maya K. Feezell
- Department of Integrative BiologyOregon State UniversityCorvallisOregonUSA
| | | | - Devyn Pires
- College of Veterinary MedicineOregon State UniversityCorvallisOregonUSA
| | | | - Zachary H. Randell
- Department of Integrative BiologyOregon State UniversityCorvallisOregonUSA
| | - Erick White
- Department of Integrative BiologyOregon State UniversityCorvallisOregonUSA
| | - Sarah A. Gravem
- Department of Integrative BiologyOregon State UniversityCorvallisOregonUSA
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25
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Maberly SC, Stott A, Gontero B. The differential ability of two species of seagrass to use carbon dioxide and bicarbonate and their modelled response to rising concentrations of inorganic carbon. FRONTIERS IN PLANT SCIENCE 2022; 13:936716. [PMID: 36388529 PMCID: PMC9648567 DOI: 10.3389/fpls.2022.936716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 09/14/2022] [Indexed: 06/16/2023]
Abstract
Seagrass meadows are one of the most productive ecosystems on the planet, but their photosynthesis rate may be limited by carbon dioxide but mitigated by exploiting the high concentration of bicarbonate in the ocean using different active processes. Seagrasses are declining worldwide at an accelerating rate because of numerous anthropogenic pressures. However, rising ocean concentrations of dissolved inorganic carbon, caused by increases in atmospheric carbon dioxide, may benefit seagrass photosynthesis. Here we compare the ability of two seagrass from the Mediterranean Sea, Posidonia oceanica (L.) Delile and Zostera marina L., to use carbon dioxide and bicarbonate at light saturation, and model how increasing concentrations of inorganic carbon affect their photosynthesis rate. pH-drift measurements confirmed that both species were able to use bicarbonate in addition to carbon dioxide, but that Z. marina was more effective than P. oceanica. Kinetic experiments showed that, compared to Z. marina, P. oceanica had a seven-fold higher affinity for carbon dioxide and a 1.6-fold higher affinity for bicarbonate. However, the maximal rate of bicarbonate uptake in Z. marina was 2.1-fold higher than in P. oceanica. In equilibrium with 410 ppm carbon dioxide in the atmosphere, the modelled rates of photosynthesis by Z. marina were slightly higher than P. oceanica, less carbon limited and depended on bicarbonate to a greater extent. This greater reliance by Z. marina is consistent with its less depleted 13C content compared to P. oceanica. Modelled photosynthesis suggests that both species would depend on bicarbonate alone at an atmospheric carbon dioxide partial pressure of 280 ppm. P. oceanica was projected to benefit more than Z. marina with increasing atmospheric carbon dioxide partial pressures, and at the highest carbon dioxide scenario of 1135 ppm, would have higher rates of photosynthesis and be more saturated by inorganic carbon than Z. marina. In both species, the proportional reliance on bicarbonate declined markedly as carbon dioxide concentrations increased and in P. oceanica carbon dioxide would become the major source of inorganic carbon.
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Affiliation(s)
| | - Andrew W. Stott
- UK Centre for Ecology & Hydrology, Lancaster Environment Centre, Lancaster, United Kingdom
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26
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Harper LM, Lefcheck JS, Whippo R, Jones MS, Foltz Z, Duffy JE. Blinded by the bright: How species‐poor habitats contribute to regional biodiversity across a tropical seascape. DIVERS DISTRIB 2022. [DOI: 10.1111/ddi.13632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Affiliation(s)
- Leah M. Harper
- Tennenbaum Marine Observatories Network and MarineGEO Program, Smithsonian Environmental Research Center Edgewater Maryland USA
| | - Jonathan S. Lefcheck
- Tennenbaum Marine Observatories Network and MarineGEO Program, Smithsonian Environmental Research Center Edgewater Maryland USA
| | - Ross Whippo
- Oregon Institute of Marine Biology Charleston Oregon USA
| | | | | | - J. Emmett Duffy
- Tennenbaum Marine Observatories Network and MarineGEO Program, Smithsonian Environmental Research Center Edgewater Maryland USA
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27
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Rosario K, Van Bogaert N, López-Figueroa NB, Paliogiannis H, Kerr M, Breitbart M. Freshwater macrophytes harbor viruses representing all five major phyla of the RNA viral kingdom Orthornavirae. PeerJ 2022; 10:e13875. [PMID: 35990902 PMCID: PMC9390326 DOI: 10.7717/peerj.13875] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 07/19/2022] [Indexed: 01/18/2023] Open
Abstract
Research on aquatic plant viruses is lagging behind that of their terrestrial counterparts. To address this knowledge gap, here we identified viruses associated with freshwater macrophytes, a taxonomically diverse group of aquatic phototrophs that are visible with the naked eye. We surveyed pooled macrophyte samples collected at four spring sites in Florida, USA through next generation sequencing of RNA extracted from purified viral particles. Sequencing efforts resulted in the detection of 156 freshwater macrophyte associated (FMA) viral contigs, 37 of which approximate complete genomes or segments. FMA viral contigs represent putative members from all five major phyla of the RNA viral kingdom Orthornavirae. Similar to viral types found in land plants, viral sequences identified in macrophytes were dominated by positive-sense RNA viruses. Over half of the FMA viral contigs were most similar to viruses reported from diverse hosts in aquatic environments, including phototrophs, invertebrates, and fungi. The detection of FMA viruses from orders dominated by plant viruses, namely Patatavirales and Tymovirales, indicate that members of these orders may thrive in aquatic hosts. PCR assays confirmed the presence of putative FMA plant viruses in asymptomatic vascular plants, indicating that viruses with persistent lifestyles are widespread in macrophytes. The detection of potato virus Y and oat blue dwarf virus in submerged macrophytes suggests that terrestrial plant viruses infect underwater plants and highlights a potential terrestrial-freshwater plant virus continuum. Defining the virome of unexplored macrophytes will improve our understanding of virus evolution in terrestrial and aquatic primary producers and reveal the potential ecological impacts of viral infection in macrophytes.
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Affiliation(s)
- Karyna Rosario
- College of Marine Science, University of South Florida, St Petersburg, Florida, United States
| | - Noémi Van Bogaert
- College of Marine Science, University of South Florida, St Petersburg, Florida, United States,Present Address: FVPHouse, Berlare, Belgium
| | | | - Haris Paliogiannis
- College of Marine Science, University of South Florida, St Petersburg, Florida, United States,Present Address: MIO-ECSDE, Athens, Greece
| | - Mason Kerr
- College of Marine Science, University of South Florida, St Petersburg, Florida, United States
| | - Mya Breitbart
- College of Marine Science, University of South Florida, St Petersburg, Florida, United States
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28
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Unsworth RKF, Cullen-Unsworth LC, Jones BLH, Lilley RJ. The planetary role of seagrass conservation. Science 2022; 377:609-613. [PMID: 35926055 DOI: 10.1126/science.abq6923] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Seagrasses are remarkable plants that have adapted to live in a marine environment. They form extensive meadows found globally that bioengineer their local environments and preserve the coastal seascape. With the increasing realization of the planetary emergency that we face, there is growing interest in using seagrasses as a nature-based solution for greenhouse gas mitigation. However, seagrass sensitivity to stressors is acute, and in many places, the risk of loss and degradation persists. If the ecological state of seagrasses remains compromised, then their ability to contribute to nature-based solutions for the climate emergency and biodiversity crisis remains in doubt. We examine the major ecological role that seagrasses play and how rethinking their conservation is critical to understanding their part in fighting our planetary emergency.
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Affiliation(s)
- Richard K F Unsworth
- Seagrass Ecosystem Research Group, Faculty of Science and Engineering, Swansea University, Singleton Park, Swansea SA2 8PP, Wales, UK.,Project Seagrass, The Yard, Bridgend Industrial Estate, Bridgend CF31 3EB, Wales, UK
| | - Leanne C Cullen-Unsworth
- Seagrass Ecosystem Research Group, Faculty of Science and Engineering, Swansea University, Singleton Park, Swansea SA2 8PP, Wales, UK.,Project Seagrass, The Yard, Bridgend Industrial Estate, Bridgend CF31 3EB, Wales, UK
| | - Benjamin L H Jones
- Project Seagrass, The Yard, Bridgend Industrial Estate, Bridgend CF31 3EB, Wales, UK.,Department of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Richard J Lilley
- Project Seagrass, The Yard, Bridgend Industrial Estate, Bridgend CF31 3EB, Wales, UK
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29
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Hossain MB, Masum Z, Rahman MS, Yu J, Noman MA, Jolly YN, Begum BA, Paray BA, Arai T. Heavy Metal Accumulation and Phytoremediation Potentiality of Some Selected Mangrove Species from the World's Largest Mangrove Forest. BIOLOGY 2022; 11:biology11081144. [PMID: 36009771 PMCID: PMC9405028 DOI: 10.3390/biology11081144] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 05/08/2022] [Accepted: 05/10/2022] [Indexed: 11/16/2022]
Abstract
Toxic metal pollution is a global issue, and the use of metal-accumulating plants to clean contaminated ecosystems is one of the most rapidly growing ecologically beneficial and cost-effective technologies. In this study, samples of sediment and three mangrove species (Excoecaria agallocha, Avicennia officinalis, Sonneratia apetala) were collected from the world’s largest mangrove forest (along the Northern Bay of Bengal Coast) with the aim of evaluating metal concentrations, contamination degrees, and phytoremediation potentiality of those plants. Overall, the heavy metals concentration in sediment ranged from Cu: 72.41−95.89 mg/kg; Zn: 51.28−71.20 mg/kg; Fe: 22,760−27,470 mg/kg; Mn: 80.37−116.37 mg/kg; Sr: 167.92−221.44 mg/kg. In mangrove plants, the mean concentrations were in the order of E. agallocha > A. officinalis > S. apetala. The mean (± SD) concentration of each metal in the plant tissue (root) was found following the descending order of Fe (737.37 ± 153.06) > Mn (151.13 ± 34.26) > Sr (20.98 ± 6.97) > Cu (16.12 ± 4.34) > Zn (11.3 ± 2.39) mg/kg, whereas, in the leaf part, the mean concentration (mg/kg) of each metal found in the order of Fe (598.75 ± 410.65) > Mn (297.27 ± 148.11) > Sr (21.40 ± 8.71) > Cu (14.25 ± 2.51) > Zn (12.56 ± 2.13). The contamination factor (CF) values for the studied metals were in the descending order of Cu > Sr > Zn > Fe > Mn. The values of Igeo (Geo-accumulation index) and CF showed that the area was unpolluted to moderately polluted by Zn, Fe, Mn, Cu and Sr. Enrichment factor (EF) values in both sampling stations portrayed moderate to minimum enrichment. Phytoremediation potentiality of the species was assessed by bio-concentration factor (BCF) and translocation factor (TF). BCF values showed less accumulation for most of the heavy metals (<1) except Mn which was highly accumulated in all mangrove plants. The translocation factor (TF) values depicted that most of the heavy metals were strongly accumulated in plant tissues (>1). However, the BCF value depicts that Mn was highly bioconcentrated in E. agallocha, but the translocation on leaves tissue were minimum, which reveals that E. agallocha is phytoextractor for Mn, and accumulated in root tissues. All the examined plants can be used as phytoextractors as they have bioconcentration factors <1 and translocation factors >1. However, A. officinalis is clearly more suitable for metal extraction than S. apetala and E. agallocha in terms of hyper-metabolizing capabilities.
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Affiliation(s)
- M. Belal Hossain
- Department of Fisheries and Marine Science, Noakhali Science and Technology University, Noakhali 3814, Bangladesh;
- School of Engineering and Built Environment, Griffith University, Brisbane, QLD 4111, Australia;
- Correspondence:
| | - Zobaer Masum
- Department of Fisheries and Marine Science, Noakhali Science and Technology University, Noakhali 3814, Bangladesh;
| | - M. Safiur Rahman
- Chemistry Division, Atomic Energy Centre Dhaka (AECD), Bangladesh Atomic Energy Commission, Dhaka 1000, Bangladesh; (M.S.R.); (Y.N.J.); (B.A.B.)
| | - Jimmy Yu
- School of Engineering and Built Environment, Griffith University, Brisbane, QLD 4111, Australia;
| | - Md. Abu Noman
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China;
| | - Yeasmin N. Jolly
- Chemistry Division, Atomic Energy Centre Dhaka (AECD), Bangladesh Atomic Energy Commission, Dhaka 1000, Bangladesh; (M.S.R.); (Y.N.J.); (B.A.B.)
| | - Bilkis A. Begum
- Chemistry Division, Atomic Energy Centre Dhaka (AECD), Bangladesh Atomic Energy Commission, Dhaka 1000, Bangladesh; (M.S.R.); (Y.N.J.); (B.A.B.)
| | - Bilal Ahamad Paray
- Department of Zoology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia;
| | - Takaomi Arai
- Environmental and Life Sciences Programme, Faculty of Science, University Brunei Darussalam, Jala Tungku Link, Gadong BE1410, Brunei;
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30
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Carter AB, Collier C, Coles R, Lawrence E, Rasheed MA. Community-specific "desired" states for seagrasses through cycles of loss and recovery. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 314:115059. [PMID: 35462253 DOI: 10.1016/j.jenvman.2022.115059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Revised: 04/05/2022] [Accepted: 04/08/2022] [Indexed: 06/14/2023]
Abstract
Seagrass habitats provide critical ecosystem services, yet there is ongoing concern over mounting pressures and continuing degradation. Defining a desired state for these habitats is a key step in implementing appropriate management but is often difficult given the challenges of available data and an evaluation of where to set benchmarks. We use more than 20 years of historical seagrass biomass data (1995-2018) for the diverse seagrass communities of Australia's Great Barrier Reef World Heritage Area (GBRWHA) to develop desired state benchmarks. Desired state for seagrass biomass was estimated for 25 of 36 previously defined seagrass communities with the remainder having insufficient data. Desired state varied by more than one order of magnitude between community types and was influenced by the mix of species in the communities and the range of environmental conditions. We identify a historical, decadal-scale cycle of decline with recovery to desired state in coastal intertidal communities. In contrast a number of the estuary and coastal subtidal communities have not recovered to desired state biomass. Understanding a historical context is critically important for setting benchmarks and making informed management decisions on the present state of seagrass in the GBRWHA. The approach we have developed is scalable for monitoring, management and assessment of pressures for other management areas and for other jurisdictions. Our results guide conservation planning through prioritization of the at-risk seagrass communities that are continuing to fall below their desired state.
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Affiliation(s)
- Alex B Carter
- Centre for Tropical Water & Aquatic Ecosystem Research (TropWATER), James Cook University, Cairns, Australia.
| | - Catherine Collier
- Centre for Tropical Water & Aquatic Ecosystem Research (TropWATER), James Cook University, Cairns, Australia
| | - Rob Coles
- Centre for Tropical Water & Aquatic Ecosystem Research (TropWATER), James Cook University, Cairns, Australia
| | | | - Michael A Rasheed
- Centre for Tropical Water & Aquatic Ecosystem Research (TropWATER), James Cook University, Cairns, Australia
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31
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Mohapatra M, Manu S, Dash SP, Rastogi G. Seagrasses and local environment control the bacterial community structure and carbon substrate utilization in brackish sediments. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 314:115013. [PMID: 35447445 DOI: 10.1016/j.jenvman.2022.115013] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 03/16/2022] [Accepted: 04/02/2022] [Indexed: 06/14/2023]
Abstract
Seagrasses are complex benthic coastal ecosystems that play a crucial role in organic matter cycling and carbon sequestration. However, little is known about how seagrasses influence the structure and carbon utilization potential of benthic bacterial communities. This study examined the bacterial communities in monospecific and mixed meadows of seagrasses and compared with bulk (unvegetated) sediments from Chilika, a brackish water coastal lagoon of India. High-throughput sequencing of 16S rRNA genes revealed a vegetation effect in terms of differences in benthic bacterial community diversity, composition, and abundances in comparison with bulk sediments. Desulfobacterales, Chromatiales, Enterobacteriales, Clostridiales, Vibrionales, and Acidimicrobiales were major taxa that contributed to differences between seagrass and bulk sediments. Seagrasses supported ∼5.94 fold higher bacterial abundances than the bulk due to rich organic carbon stock in their sediments. Co-occurrence network demonstrated much stronger potential interactions and connectedness in seagrass bacterial communities compared to bulk. Chromatiales and Acidimicrobiales were identified as the top two keystone taxa in seagrass bacterial communities, whereas, Dehalococcoidales and Rhizobiales were in bulk communities. Seagrasses and local environmental factors, namely, water depth, water pH, sediment salinity, redox potential, total organic carbon, available nitrogen, sediment texture, sediment pH, and sediment core depth were the major drivers of benthic bacterial community composition. Carbon metabolic profiling revealed that heterotrophic bacteria in seagrass sediments were much more metabolically diverse and active than bulk. The utilization of carbon substrate guilds, namely, amino acids, amines, carboxylic acids, carbohydrates, polymers, and phenolic compounds was enhanced in seagrass sediments. Metabolic mapping predicted higher prevalence of sulfate-reducer and N2 fixation metabolic functions in seagrass sediments. Overall, this study showed that seagrasses control benthic bacterial community composition and diversity, enhance heterotrophic carbon substrate utilization, and play crucial roles in organic matter cycling including degradation of hydrocarbon and xenobiotics in coastal sediments.
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Affiliation(s)
- Madhusmita Mohapatra
- Wetland Research and Training Centre, Chilika Development Authority, Balugaon, 752030, Odisha, India
| | - Shivakumara Manu
- CSIR-Centre for Cellular and Molecular Biology, Hyderabad, 500048, India
| | - Stiti Prangya Dash
- Wetland Research and Training Centre, Chilika Development Authority, Balugaon, 752030, Odisha, India
| | - Gurdeep Rastogi
- Wetland Research and Training Centre, Chilika Development Authority, Balugaon, 752030, Odisha, India.
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32
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Xu S, Zhang Y, Zhou Y, Xu S, Yue S, Liu M, Zhang X. Warming northward shifting southern limits of the iconic temperate seagrass (Zostera marina). iScience 2022; 25:104755. [PMID: 35958026 PMCID: PMC9357840 DOI: 10.1016/j.isci.2022.104755] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 05/26/2022] [Accepted: 07/08/2022] [Indexed: 11/19/2022] Open
Abstract
Global warming can shift the range edges of numerous species poleward. Here, eelgrass distribution was reinvestigated at its southern limits on the eastern coast of China, which indicated that there has been a northward shift in the southern limit of Z. marina. To determine if regional warming resulted in a northward shift in suitable eelgrass habitats, sixteen transplantations of adult eelgrass shoots and seeds at the historical southern distribution limit of eelgrass were conducted between 2016 and 2021. The results showed that high water temperatures in summer had negative effects on eelgrass growth, and directly triggered shoot mortality during 2016–2018. Under heat stress, antioxidant enzyme activity was initially increased, but then decreased under more stressful heat conditions; and the HSP70 protein and its molecular chaperone protein were highly expressed under heat stress. These results demonstrated that suitable eelgrass habitat was now located further north along the eastern coast of China. High temperatures trigger seagrass (Zostera marina L.) restoration failure None seedlings and adult shoots survived the first or second summer Over-summering shoots with lower density, height, and rhizome diameter Warming northward shifting eelgrass habitat range along the eastern coast of China
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Affiliation(s)
- Shaochun Xu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yu Zhang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yi Zhou
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao 266071, China
- Corresponding author
| | - Shuai Xu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shidong Yue
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Mingjie Liu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaomei Zhang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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Deng XF, Zhang YH, Liu J, Yu B, Li HC, Zhang PD. An examination of seed germination and seedling growth of Zostera marina for planting-time selection in Rongcheng Bay, Shandong Peninsula, China. MARINE POLLUTION BULLETIN 2022; 179:113740. [PMID: 35576675 DOI: 10.1016/j.marpolbul.2022.113740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 05/02/2022] [Accepted: 05/06/2022] [Indexed: 06/15/2023]
Abstract
This study firstly quantified the responses of seeds of Zostera marina to different planting times (22 September, 5 October, 23 October, 7 November and 20 November in 2015) through a field seed-planting experiment over a two year period. The suitable seed planting time required by the seeds of Z. marina was evaluated. The seedling establishment rate of Z. marina subjected to different planting times ranged from 7% to 55%, with the higher values attained on the treatments of 22 September and 5 October. New plant patches from seed were fully developed and well maintained on the planting time of 22 September, 5 October and 23 October after 2 years following planting. The shoot density under the three treatments ranged from 62 shoots per replicate to 72 shoots per replicate with an average of 67 shoots per replicate in September 2017. According to the propagation assessment and growth analysis, we found that the planting time from mid-September to mid-October may be the optimal time to plant seeds of Z. marina in our experimental site. Our results demonstrate that seed planting time has an important effect on the effectiveness of eelgrass restoration and provide data that could prove helpful in the development of successful eelgrass restoration.
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Affiliation(s)
- Xiao-Fan Deng
- Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, People's Republic of China
| | - Yan-Hao Zhang
- Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, People's Republic of China
| | - Jie Liu
- Shandong Marine Forecast and Hazard Mitigation Service, Qingdao, People's Republic of China
| | - Bing Yu
- Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, People's Republic of China
| | - Hong-Chen Li
- Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, People's Republic of China
| | - Pei-Dong Zhang
- Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, People's Republic of China.
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34
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Improving Approaches to Mapping Seagrass within the Great Barrier Reef: From Field to Spaceborne Earth Observation. REMOTE SENSING 2022. [DOI: 10.3390/rs14112604] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Seagrass meadows are a key ecosystem of the Great Barrier Reef World Heritage Area, providing one of the natural heritage attributes underpinning the reef’s outstanding universal value. We reviewed approaches employed to date to create maps of seagrass meadows in the optically complex waters of the Great Barrier Reef and explored enhanced mapping approaches with a focus on emerging technologies, and key considerations for future mapping. Our review showed that field-based mapping of seagrass has traditionally been the most common approach in the GBRWHA, with few attempts to adopt remote sensing approaches and emerging technologies. Using a series of case studies to harness the power of machine- and deep-learning, we mapped seagrass cover with PlanetScope and UAV-captured imagery in a variety of settings. Using a machine-learning pixel-based classification coupled with a bootstrapping process, we were able to significantly improve maps of seagrass, particularly in low cover, fragmented and complex habitats. We also used deep-learning models to derive enhanced maps from UAV imagery. Combined, these lessons and emerging technologies show that more accurate and efficient seagrass mapping approaches are possible, producing maps of higher confidence for users and enabling the upscaling of seagrass mapping into the future.
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35
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Song Z, Sun Y, Liu P, Wang Y, Huang Y, Gao Y, Hu X. Invasion of
Spartina alterniflora
on
Zostera japonica
enhances the abundances of bacteria by absolute quantification sequencing analysis. Ecol Evol 2022; 12:e8939. [PMID: 35600690 PMCID: PMC9120208 DOI: 10.1002/ece3.8939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Revised: 04/15/2022] [Accepted: 05/04/2022] [Indexed: 11/26/2022] Open
Abstract
Plant invasion can alter soil organic matter composition and indirectly impact estuary ecology; therefore, it is paramount to understand how plant invasion influences the bacterial community. Here, we present an absolute quantification 16S rRNA gene sequencing to investigate the bacterial communities that were collected from Zostera japonica and Spartina alterniflora covered areas and Z. japonica degradation areas in the Yellow River Estuary. Our data revealed that the absolute quantity of bacteria in the surface layer was significantly (p < .05) higher than that in the bottom and degradation areas. Following the invasion of S. alterniflora, the abundances of Bacteroidia, Acidimicrobiaceae, and Dehalococcoidaceaewere enriched in the S. alterniflora sediment. In addition, variations in the composition of sediment bacterial communities at the phylum level were the most intimately related to total organic carbon (TOC), and the content of heavy metals could reduce the abundance of bacteria. This study provided some information to understand the effects of S. alterniflora invasion on Z. japonica from the perspective of microbiome level.
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Affiliation(s)
- Zenglei Song
- Key laboratory of Coastal Biology and Bioresource Utilization Yantai Institute of Costal Zone Research Chinese Academy of Sciences Yantai China
- Laboratory for Marine Biology and Biotechnology Qingdao National Laboratory for Marine Science and Technology Qingdao China
- University of Chinese Academy of Sciences Beijing China
| | - Yanyu Sun
- Key laboratory of Coastal Biology and Bioresource Utilization Yantai Institute of Costal Zone Research Chinese Academy of Sciences Yantai China
- Laboratory for Marine Biology and Biotechnology Qingdao National Laboratory for Marine Science and Technology Qingdao China
- University of Chinese Academy of Sciences Beijing China
| | - Pengyuan Liu
- Key laboratory of Coastal Biology and Bioresource Utilization Yantai Institute of Costal Zone Research Chinese Academy of Sciences Yantai China
- Laboratory for Marine Biology and Biotechnology Qingdao National Laboratory for Marine Science and Technology Qingdao China
- University of Chinese Academy of Sciences Beijing China
| | - Yibo Wang
- Key laboratory of Coastal Biology and Bioresource Utilization Yantai Institute of Costal Zone Research Chinese Academy of Sciences Yantai China
- Laboratory for Marine Biology and Biotechnology Qingdao National Laboratory for Marine Science and Technology Qingdao China
- University of Chinese Academy of Sciences Beijing China
| | - Yanyan Huang
- Key laboratory of Coastal Biology and Bioresource Utilization Yantai Institute of Costal Zone Research Chinese Academy of Sciences Yantai China
- Laboratory for Marine Biology and Biotechnology Qingdao National Laboratory for Marine Science and Technology Qingdao China
- University of Chinese Academy of Sciences Beijing China
| | - Yan Gao
- Marine Science Research Institute of Shandong Province National Oceanographic Center of Qingdao Qingdao China
| | - Xiaoke Hu
- Key laboratory of Coastal Biology and Bioresource Utilization Yantai Institute of Costal Zone Research Chinese Academy of Sciences Yantai China
- Laboratory for Marine Biology and Biotechnology Qingdao National Laboratory for Marine Science and Technology Qingdao China
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36
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Ambo-Rappe R. The success of seagrass restoration using Enhalus acoroides seeds is correlated with substrate and hydrodynamic conditions. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 310:114692. [PMID: 35192985 DOI: 10.1016/j.jenvman.2022.114692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 01/12/2022] [Accepted: 02/05/2022] [Indexed: 06/14/2023]
Abstract
The extent of seagrass areas and their associated ecosystem functions and services have been declining due to many factors. Seagrass restoration is important to mitigate such declines. Seagrass restoration using seeds can be a viable method due to the high seed availability of some seagrass species and could enhance seagrass resilience to climate change stress. However, this method sometimes has low success rates due to high seed predation and seeds being washed away by wave action or substrate movement. The research was conducted to compare the settlement of Enhalus acoroides seeds and the establishment of seedlings on different sediment types (fine sand, coarse sand, and hard substrate with rubble) combined with different wave exposure levels (high and moderate). This is the first study to observe seed survival and seedling establishment of the tropical seagrass E. acoroides in the wild. On average, 64% of seeds dispersed on fine sand substrate at a moderate exposure site survived and developed into established seedlings by the end of the 40 days observation period, but the survival of seeds dispersed on coarse sand at high exposure and hard substrate at moderate exposure only remained above 50% for up to 3 days, and had declined to 2% and 1.4%, respectively, by day 40. Six years later, surviving E. acoroides sample from the coarse sand and hard substrate both had well-developed rhizomes but fewer roots than the plant from the fine sand site, these rhizome and roots characteristics were likely adaptations to increase anchoring capacity in the specific site. The results indicate that Enhalus seed settlement and seedling establishment can readily occur at sites with fine sand substrate and lower wave exposure; however, additional measures may be required at more exposed sites with mobile or hard substrates until seedlings become established.
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Affiliation(s)
- Rohani Ambo-Rappe
- Marine Science Department, Faculty of Marine Science and Fisheries, Hasanuddin University, Jl. Perintis Kemerdekaan Km.10 Tamalanrea, Makassar, 90245, Indonesia.
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37
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Cowen LJ, Putnam HM. Bioinformatics of Corals: Investigating Heterogeneous Omics Data from Coral Holobionts for Insight into Reef Health and Resilience. Annu Rev Biomed Data Sci 2022; 5:205-231. [PMID: 35537462 DOI: 10.1146/annurev-biodatasci-122120-030732] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Coral reefs are home to over two million species and provide habitat for roughly 25% of all marine animals, but they are being severely threatened by pollution and climate change. A large amount of genomic, transcriptomic, and other omics data is becoming increasingly available from different species of reef-building corals, the unicellular dinoflagellates, and the coral microbiome (bacteria, archaea, viruses, fungi, etc.). Such new data present an opportunity for bioinformatics researchers and computational biologists to contribute to a timely, compelling, and urgent investigation of critical factors that influence reef health and resilience. Expected final online publication date for the Annual Review of Biomedical Data Science, Volume 5 is August 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Lenore J Cowen
- Department of Computer Science, Tufts University, Medford, Massachusetts, USA;
| | - Hollie M Putnam
- Department of Biological Sciences, University of Rhode Island, Kingston, Rhode Island, USA;
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38
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Alotaibi MO, Mohammed AE, Eltom KH. Metagenomic analysis of bacterial communities of Wadi Namar Lake, Riyadh, Saudi Arabia. Saudi J Biol Sci 2022; 29:3749-3758. [PMID: 35844383 PMCID: PMC9280250 DOI: 10.1016/j.sjbs.2022.03.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Revised: 02/08/2022] [Accepted: 03/02/2022] [Indexed: 11/23/2022] Open
Abstract
Wadi Namar lake is a new touristic attraction area in the south of Riyadh. Human activities around the lake may lead to changes in water quality with subsequent changes in microenvironment components including microbial diversity. The current study was designed to assess possible changes in bacterial communities of the water at Wadi Namar Lake. Therefore, water samples were collected from three different locations along the lake: L1 (no human activities, no plants), L2 (no human activity, some plants) and L3 (human activities, municipal wastes and some plants). The total DNA of the samples was extracted and subjected to 16S rDNA sequencing and metagenomic analysis; water pH, electrical conductivity (EC), total dissolved solids (TDS) as well as the concentration of Na+1, K+1, Cl-1 and total N were analysed. Metagenomic analysis showed variations in relative abundance of 17 phyla, 31 families, 43 genera and 19 species of bacteria between the locations. Proteobacteria was the most abundant phylum in all locations; however, its highest abundance was in L1. Planctomycete phylum was highly abundant in L1 and L3, while its abundance in L2 was low. The phyla Acidobacteria, Candidatus Saccharibacteria, Nitrospirae and Chloroflexi were associated with high TDS, EC, K+1 and Cl-1 concentrations in L3; various human activities around this location had possibly affected microbial diversity. Current study results help in recognising the structure of bacterial communities at Wadi Namar Lake in relation to their surroundings for planning to environment protection and future restoration of affected ecosystems.
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Affiliation(s)
- Modhi O. Alotaibi
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Afrah E. Mohammed
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Kamal H. Eltom
- Unit of Animal Health and Safety of Animal Products, Institute for Studies and Promotion of Animal Exports, University of Khartoum, Shambat Postal Code 13314, Khartoum North, Sudan
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39
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Winters G, Teichberg M, Reuter H, Viana IG, Willette DA. Editorial: Seagrasses Under Times of Change. FRONTIERS IN PLANT SCIENCE 2022; 13:870478. [PMID: 35574081 PMCID: PMC9096867 DOI: 10.3389/fpls.2022.870478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2022] [Accepted: 03/14/2022] [Indexed: 06/15/2023]
Affiliation(s)
- Gidon Winters
- Dead Sea and Arava Science Center (DSASC), Masada National Park, Mount Masada, Israel
- Eilat Campus, Ben-Gurion University of the Negev, Hatmarim Blv, Eilat, Israel
| | - Mirta Teichberg
- Leibniz Centre for Tropical Marine Research GmbH (ZMT), Fahrenheitstraße 6, Bremen, Germany
- The Ecosystems Center, Marine Biological Laboratory Starr, Woods Hole, MA, United States
| | - Hauke Reuter
- The Ecosystems Center, Marine Biological Laboratory Starr, Woods Hole, MA, United States
- Faculty for Biology and Chemistry, University of Bremen, Bremen, Germany
| | - Inés G. Viana
- Instituto Español de Oceanografía (IEO-CSIC), Centro Oceanográfico de A Coruña, A Coruña, Spain
| | - Demian A. Willette
- Biology Department, Loyola Marymount University, Los Angeles, CA, United States
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40
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Szitenberg A, Beca-Carretero P, Azcárate-García T, Yergaliyev T, Alexander-Shani R, Winters G. Teasing apart the host-related, nutrient-related and temperature-related effects shaping the phenology and microbiome of the tropical seagrass Halophila stipulacea. ENVIRONMENTAL MICROBIOME 2022; 17:18. [PMID: 35428367 PMCID: PMC9013022 DOI: 10.1186/s40793-022-00412-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2021] [Accepted: 03/24/2022] [Indexed: 06/02/2023]
Abstract
BACKGROUND Halophila stipulacea seagrass meadows are an ecologically important and threatened component of the ecosystem in the Gulf of Aqaba. Recent studies have demonstrated correlated geographic patterns for leaf epiphytic community composition and leaf morphology, also coinciding with different levels of water turbidity and nutrient concentrations. Based on these observations, workers have suggested an environmental microbial fingerprint, which may reflect various environmental stress factors seagrasses have experienced, and may add a holobiont level of plasticity to seagrasses, assisting their acclimation to changing environments and through range expansion. However, it is difficult to tease apart environmental effects from host-diversity dependent effects, which have covaried in field studies, although this is required in order to establish that differences in microbial community compositions among sites are driven by environmental conditions rather than by features governed by the host. RESULTS In this study we carried out a mesocosm experiment, in which we studied the effects of warming and nutrient stress on the composition of epiphytic bacterial communities and on some phenological traits. We studied H. stipulacea collected from two different meadows in the Gulf of Aqaba, representing differences in the host and the environment alike. We found that the source site from which seagrasses were collected was the major factor governing seagrass phenology, although heat increased shoot mortality and nutrient loading delayed new shoot emergence. Bacterial diversity, however, mostly depended on the environmental conditions. The most prominent pattern was the increase in Rhodobacteraceae under nutrient stress without heat stress, along with an increase in Microtrichaceae. Together, the two taxa have the potential to maintain nitrate reduction followed by an anammox process, which can together buffer the increase in nutrient concentrations across the leaf surface. CONCLUSIONS Our results thus corroborate the existence of environmental microbial fingerprints, which are independent from the host diversity, and support the notion of a holobiont level plasticity, both important to understand and monitor H. stipulacea ecology under the changing climate.
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Affiliation(s)
- Amir Szitenberg
- Dead Sea and Arava Science Center, Dead Sea Branch, 8693500, Masada, Israel.
- Ben-Gurion University of the Negev, 8858537, Eilat, Israel.
| | - Pedro Beca-Carretero
- Department of Theoretical Ecology and Modelling, Leibniz Centre for Tropical Marine Research, Fahrenheitstrasse 6, 28359, Bremen, Germany
- Department of Oceanography, Instituto de Investigacións Mariñas (IIM-CSIC), Vigo, Spain
- Departamento de Biología, Área de Ecología, Facultad de Ciencias del Mar Y Ambientales, Universidad de Cádiz, 11510, Puerto Real, Cádiz, Spain
| | - Tomás Azcárate-García
- Department of Theoretical Ecology and Modelling, Leibniz Centre for Tropical Marine Research, Fahrenheitstrasse 6, 28359, Bremen, Germany
- Departamento de Biología, Área de Ecología, Facultad de Ciencias del Mar Y Ambientales, Universidad de Cádiz, 11510, Puerto Real, Cádiz, Spain
- Dead Sea and Arava Science Center, Central Arava Branch, 8682500, Sapir, Israel
| | - Timur Yergaliyev
- Dead Sea and Arava Science Center, Dead Sea Branch, 8693500, Masada, Israel
- Hohenheim Center for Livestock Microbiome Research (HoLMiR), Institute of Animal Science, University of Hohenheim, Stuttgart, Germany
| | | | - Gidon Winters
- Ben-Gurion University of the Negev, 8858537, Eilat, Israel
- Dead Sea and Arava Science Center, Central Arava Branch, 8682500, Sapir, Israel
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Suzzi AL, Gaston TF, McKenzie L, Mazumder D, Huggett MJ. Tracking the impacts of nutrient inputs on estuary ecosystem function. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 811:152405. [PMID: 34923003 DOI: 10.1016/j.scitotenv.2021.152405] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 12/10/2021] [Accepted: 12/10/2021] [Indexed: 06/14/2023]
Abstract
Estuaries are one of the most impacted coastal environments globally, subjected to multiple stressors from urban, industry and coastal development. With increasing anthropogenic activity surrounding estuarine systems, sewage inputs have become a common concern. Stable isotope analysis provides a well-established tool to investigate the incorporation of nitrogen into marine organisms and identify major nutrient sources. Benthic macroinvertebrate communities are often used as bioindicators in ecological studies as they typically display predictable responses to anthropogenic pressures, however have a suite of limitations and costs associated with their use. 16S rDNA amplicon sequencing techniques allow for investigation of the microbial communities inhabiting complex environmental samples, with potential as a tool in the ecological assessment of pollution. These communities have not yet been adequately considered for ecological studies and biomonitoring, with a need to better understand interactions with environmental stressors and implications for ecosystem function. This study used a combination of stable isotope analysis to trace the uptake of anthropogenic nitrogen in biota, traditional assessment of benthic macroinvertebrate communities, and 16S rDNA genotyping of benthic microbial communities. Stable isotope analysis of seagrass and epiphytes identified multiple treated and untreated sewage inputs, ranges of 5.2-7.2‰ and 1.9-4.0‰ for δ15N respectively, as the dominant nitrogen source at specific locations. The benthic macroinvertebrate community reflected these inputs with shifts in dominant taxa and high abundances of polychaetes at some sites. Microbial communities provided a sensitive indication of impact with a breadth of information not available using traditional techniques. Composition and predicted function reflected sewage inputs, particularly within sediments, with the relative abundance of specific taxa and putative pathogens linked to these inputs. This research supports the growing body of evidence that benthic microbial communities respond rapidly to anthropogenic stressors and have potential as a monitoring tool in urban estuarine systems.
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Affiliation(s)
- Alessandra L Suzzi
- College of Engineering, Science and Environment, University of Newcastle, Ourimbah, NSW, Australia.
| | - Troy F Gaston
- College of Engineering, Science and Environment, University of Newcastle, Ourimbah, NSW, Australia
| | - Louise McKenzie
- College of Engineering, Science and Environment, University of Newcastle, Ourimbah, NSW, Australia; Hunter Water Corporation, Newcastle, NSW, Australia
| | - Debashish Mazumder
- Australian Nuclear Science and Technology Organisation (ANSTO), Sydney, NSW, Australia
| | - Megan J Huggett
- College of Engineering, Science and Environment, University of Newcastle, Ourimbah, NSW, Australia; Centre for Marine Ecosystems Research, School of Science, Edith Cowan University, Joondalup, WA, Australia
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42
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Girard EB, Ferse S, Ambo-Rappe R, Jompa J, Renema W. Dynamics of large benthic foraminiferal assemblages: A tool to foreshadow reef degradation? THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 811:151396. [PMID: 34742799 DOI: 10.1016/j.scitotenv.2021.151396] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Revised: 10/21/2021] [Accepted: 10/30/2021] [Indexed: 06/13/2023]
Abstract
Ecological regime shifts in the marine realm have been recorded from a variety of systems and locations around the world. Coral reefs have been especially affected, with their benthic habitat changing from a dominance of stony corals to a dominance of other organisms such as fleshy algae. To detect changes in the benthic habitat of coral reefs, simple tools applicable on a global scale are necessary for future monitoring programs. Hence, the aim of this research is to explore the hypothesis that shifts in assemblages of large benthic foraminifera (LBF) can detect early signs of degradation in the reef benthic habitat. To do so, data on living assemblages of LBF collected between 1997 and 2018 at 12 islands in the Spermonde Archipelago (South Sulawesi, Indonesia) were analyzed. Foraminiferal specimens were morphologically identified to the species level and statistical analyses performed to assess changes in their assemblage composition. A clear temporal shift was observed. Typical foraminiferal assemblages in a coral-dominated (e.g., Amphistegina lobifera, Calcarina spengleri, Heterostegina depressa) and fleshy algae-dominated (e.g., Neorotalia gaimardi, C. mayori) reef habitats were identified and significantly linked to the substrate type. Other species (e.g., Elphidium spp., Peneroplis planatus and Sphaerogypsina globulus) seem to reflect a spatial and temporal gradient of anthropogenic pollution from local inhabited islands and ongoing urban development on the mainland. Hence communities of LBF consistently follow gradual shifts in environmental conditions. Additionally to foraminiferal assemblages being an indicator for actual reef condition, closely monitoring LBF may provide early information on reef degradation, in time to take action against identified stressors (e.g., eutrophication or intensive fishing) at local and regional scales. The circumtropical distribution of LBF is such that they can be included worldwide in reef monitoring programs, conditional to calibration to the regional species pool.
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Affiliation(s)
- Elsa B Girard
- Naturalis Biodiversity Center, Darwinweg 2, 2333 CR Leiden, the Netherlands; IBED, University of Amsterdam, Sciencepark 904, 1098, XH, Amsterdam, the Netherlands.
| | - Sebastian Ferse
- Department of Ecology, Leibniz Centre for Tropical Marine Research (ZMT), Fahrenheitstraße 6, 28359 Bremen, Germany; Department of Marine Ecology, Faculty of Biology and Chemistry, University of Bremen, 28359 Bremen, Germany
| | - Rohani Ambo-Rappe
- Marine Science Department, Faculty of Marine Science and Fisheries, Hasanuddin University, Jl. Perintis Kemerdekaan Km. 10 Tamalenrea, Makassar 90245, Indonesia
| | - Jamaluddin Jompa
- Marine Science Department, Faculty of Marine Science and Fisheries, Hasanuddin University, Jl. Perintis Kemerdekaan Km. 10 Tamalenrea, Makassar 90245, Indonesia
| | - Willem Renema
- Naturalis Biodiversity Center, Darwinweg 2, 2333 CR Leiden, the Netherlands; IBED, University of Amsterdam, Sciencepark 904, 1098, XH, Amsterdam, the Netherlands
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Detecting the Spatial Variability of Seagrass Meadows and Their Consequences on Associated Macrofauna Benthic Activity Using Novel Drone Technology. REMOTE SENSING 2021. [DOI: 10.3390/rs14010160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Seagrass meadows are undergoing significant decline locally and globally from human and climatic impacts. Seagrass decline also impacts seagrass-dependent macrofauna benthic activity, interrupts their vital linkage with adjacent habitats, and creates broader degradation through the ecosystem. Seagrass variability (gain and loss) is a driver of marine species diversity. Still, our understanding of macrofauna benthic activity distribution and their response to seagrass variability from remotely sensed drone imagery is limited. Hence, it is critical to develop fine-scale seasonal change detection techniques appropriate to the scale of variability that will apply to dynamic marine environments. Therefore, this research tested the performance of the VIS and VIS+NIR sensors from proximal low altitude remotely piloted aircraft system (RPAS) to detect fine-scale seasonal seagrass variability using spectral indices and a supervised machine learning classification technique. Furthermore, this research also attempted to identify and quantify macrofauna benthic activity from their feeding burrows and their response to seagrass variability. The results from VIS (visible spectrum) and VIS+NIR (visible and near-infrared spectrum) sensors produced a 90–98% classification accuracy. This accuracy established that the spectral indices were fundamental in this study to identify and classify seagrass density. The other important finding revealed that seagrass-associated macrofauna benthic activity showed increased or decreased abundance and distribution with seasonal seagrass variability from drone high spatial resolution orthomosaics. These results are important for seagrass conservation because managers can quickly detect fine-scale seasonal changes and take mitigation actions before the decline of this keystone species affects the entire ecosystem. Moreover, proximal low-altitude, remotely sensed time-series seasonal data provided valuable contributions for documenting spatial ecological seasonal change in this dynamic marine environment.
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Mailloux NA, Henegan CP, Lsoto D, Patterson KP, West PC, Foley JA, Patz JA. Climate Solutions Double as Health Interventions. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:13339. [PMID: 34948948 PMCID: PMC8705042 DOI: 10.3390/ijerph182413339] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 12/06/2021] [Accepted: 12/15/2021] [Indexed: 11/17/2022]
Abstract
The climate crisis threatens to exacerbate numerous climate-sensitive health risks, including heatwave mortality, malnutrition from reduced crop yields, water- and vector-borne infectious diseases, and respiratory illness from smog, ozone, allergenic pollen, and wildfires. Recent reports from the Intergovernmental Panel on Climate Change stress the urgent need for action to mitigate climate change, underscoring the need for more scientific assessment of the benefits of climate action for health and wellbeing. Project Drawdown has analyzed more than 80 solutions to address climate change, building on existing technologies and practices, that could be scaled to collectively limit warming to between 1.5° and 2 °C above preindustrial levels. The solutions span nine major sectors and are aggregated into three groups: reducing the sources of emissions, maintaining and enhancing carbon sinks, and addressing social inequities. Here we present an overview of how climate solutions in these three areas can benefit human health through improved air quality, increased physical activity, healthier diets, reduced risk of infectious disease, and improved sexual and reproductive health, and universal education. We find that the health benefits of a low-carbon society are more substantial and more numerous than previously realized and should be central to policies addressing climate change. Much of the existing literature focuses on health effects in high-income countries, however, and more research is needed on health and equity implications of climate solutions, especially in the Global South. We conclude that adding the myriad health benefits across multiple climate change solutions can likely add impetus to move climate policies faster and further.
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Affiliation(s)
- Nicholas A. Mailloux
- Center for Sustainability and the Global Environment, Nelson Institute for Environmental Studies, University of Wisconsin-Madison, Madison, WI 53726, USA; (N.A.M.); (C.P.H.); (D.L.)
| | - Colleen P. Henegan
- Center for Sustainability and the Global Environment, Nelson Institute for Environmental Studies, University of Wisconsin-Madison, Madison, WI 53726, USA; (N.A.M.); (C.P.H.); (D.L.)
| | - Dorothy Lsoto
- Center for Sustainability and the Global Environment, Nelson Institute for Environmental Studies, University of Wisconsin-Madison, Madison, WI 53726, USA; (N.A.M.); (C.P.H.); (D.L.)
| | | | - Paul C. West
- Project Drawdown, San Francisco, CA 94118, USA; (K.P.P.); (P.C.W.); (J.A.F.)
- Department of Applied Economics, University of Minnesota, St. Paul, MN 55108, USA
| | - Jonathan A. Foley
- Project Drawdown, San Francisco, CA 94118, USA; (K.P.P.); (P.C.W.); (J.A.F.)
| | - Jonathan A. Patz
- Center for Sustainability and the Global Environment, Nelson Institute for Environmental Studies, University of Wisconsin-Madison, Madison, WI 53726, USA; (N.A.M.); (C.P.H.); (D.L.)
- Global Health Institute, University of Wisconsin-Madison, Madison, WI 53706, USA
- Department of Population Health Sciences, University of Wisconsin-Madison, Madison, WI 53726, USA
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45
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Peralta G, Godoy O, Egea LG, de Los Santos CB, Jiménez-Ramos R, Lara M, Brun FG, Hernández I, Olivé I, Vergara JJ, González-Ortiz V, Moreno-Marín F, Morris EP, Villazán B, Pérez-Lloréns JL. The morphometric acclimation to depth explains the long-term resilience of the seagrass Cymodocea nodosa in a shallow tidal lagoon. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 299:113452. [PMID: 34526276 DOI: 10.1016/j.jenvman.2021.113452] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 07/27/2021] [Accepted: 07/30/2021] [Indexed: 06/13/2023]
Abstract
Cadiz Bay is a shallow mesotidal lagoon with extensive populations of the seagrass Cymodocea nodosa at intertidal and shallow subtidal elevations. This work aims to understand the mechanisms behind the resilience of this species to gradual sea level rise by studying its acclimation capacity to depth along the shallow littoral, and therefore, to gradual variations in the light environment. To address this objective, these populations have been monitored seasonally over a 10 year period, representing the longest seasonal database available in the literature for this species. The monitoring included populations at 0.4, -0.08 and -0.5 m LAT. The results show that C. nodosa has a strong seasonality for demographic and shoot dynamic properties - with longer shoots and larger growth in summer (high temperature) than in winter (low temperature), but also some losses. Moreover, shoots have different leaf morphometry depending on depth, with small and dense shoots in the intertidal areas (0.4 m) and sparse large shoots in the subtidal ones (-0.08 and 0.5 m). These differences in morphometry and shoot dynamic properties, combined with the differences in shoot density, explain the lack of differences in meadow production balance (i.e. meadow growth - meadow losses) between the intertidal (0.4 m) and the deepest population (-0.5 m), supporting the long term resilience of Cymodocea nodosa in Cadiz Bay. This study contributes to the understanding of the mechanisms behind seagrass stability and resilience, which is particularly important towards predicting the effects of climate change on these key coastal ecosystems, and also highlights the value of continuous long-term monitoring efforts to evaluate seagrass trajectories.
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Affiliation(s)
- G Peralta
- Department of Biology, University of Cadiz, Spain.
| | - O Godoy
- Department of Biology, University of Cadiz, Spain
| | - L G Egea
- Department of Biology, University of Cadiz, Spain
| | - C B de Los Santos
- Department of Biology, University of Cadiz, Spain; Centre of Marine Sciences, University of Algarve, Portugal
| | | | - M Lara
- Department of Biology, University of Cadiz, Spain; Dpto. Ecología y Geología, University of Malaga, Spain
| | - F G Brun
- Department of Biology, University of Cadiz, Spain
| | - I Hernández
- Department of Biology, University of Cadiz, Spain
| | - I Olivé
- Department of Biology, University of Cadiz, Spain; Stazione Zoologica Anton Dohrn, Italy
| | - J J Vergara
- Department of Biology, University of Cadiz, Spain
| | | | | | - E P Morris
- Department of Biology, University of Cadiz, Spain
| | - B Villazán
- Department of Biology, University of Cadiz, Spain; TAXUS Medio Ambiente S.L., Spain
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46
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Quek ZBR, Zahn G, Lee NLY, Ooi JLS, Lee JN, Huang D, Wainwright BJ. Biogeographic structure of fungal communities in seagrass Halophilia ovalis across the Malay Peninsula. ENVIRONMENTAL MICROBIOLOGY REPORTS 2021; 13:871-877. [PMID: 34438473 DOI: 10.1111/1758-2229.13003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Revised: 08/13/2021] [Accepted: 08/13/2021] [Indexed: 06/13/2023]
Abstract
Distributed across both the tropical Atlantic and Pacific oceans, the seagrass Halophilia ovalis stabilizes coastal sediment, thereby preventing shoreline erosion and is also an important food source for megaherbivores such as dugongs. However, seagrass meadows globally are under severe duress due to both climate change and anthropogenic activities. We characterized the mycobiome of Halophilia ovalis at seven sites in the Malay Peninsula using ITS1 rDNA amplicon sequences and investigated differences in fungal community structure. We found that geographic location was a significant factor shaping fungal communities and that marine sediment harboured significantly higher diversity when compared to H. ovalis leaves, roots and rhizomes. Taken together, it is likely that locality rather than specific plant structure determines fungal community structure in H. ovalis. Because the plant mycobiome is known to exert a strong effect on plant health, to maximize the success of future seagrass transplantation and restoration work we propose that these efforts consider the importance of seagrass mycobiomes at all stages.
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Affiliation(s)
- Z B Randolph Quek
- Department of Biological Sciences, National University of Singapore, Singapore
- Yale-NUS College, National University of Singapore, Singapore
| | - Geoffrey Zahn
- Biology Department, Utah Valley University, Orem, UT, USA
| | - Nicole Li Ying Lee
- Department of Biological Sciences, National University of Singapore, Singapore
| | - Jillian Lean Sim Ooi
- Department of Geography, Faculty of Arts and Social Sciences, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Jen Nie Lee
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Terengganu, Malaysia
| | - Danwei Huang
- Department of Biological Sciences, National University of Singapore, Singapore
- Tropical Marine Science Institute, National University of Singapore, Singapore
- Centre for Nature-based Climate Solutions, National University of Singapore, Singapore
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47
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Apostoloumi C, Malea P, Kevrekidis T. Principles and concepts about seagrasses: Towards a sustainable future for seagrass ecosystems. MARINE POLLUTION BULLETIN 2021; 173:112936. [PMID: 34562848 DOI: 10.1016/j.marpolbul.2021.112936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Revised: 09/02/2021] [Accepted: 09/03/2021] [Indexed: 06/13/2023]
Abstract
Seagrasses grow in shallow marine and estuarine environments worldwide, providing multiple ecosystem services. However, a global trend of seagrass loss has been documented. Thus, increasing awareness of seagrass value is crucial for the sustainability of these vital ecosystems. This study aims to contribute to the creation of a seagrass-literate society, by defining key principles and concepts in relation to seagrasses that a seagrass-literate person should know. Six principles about seagrasses were defined. Each one is underpinned by a set of concepts. These principles and concepts concern key issues of seagrass biology (Principles 1-4), value (Principles 3-5), loss and protection (Principle 5), and research (Principle 6). Seagrass principles and concepts can be primarily used for educational purposes and as a practical resource to policy- and decision- makers. Our attempt could stimulate a collaborative effort of scientists and educators, aiming to improve the recommended principles and concepts, and to contribute to seagrass conservation.
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Affiliation(s)
- Chrisa Apostoloumi
- Laboratory of Environmental Research and Education, Democritus University of Thrace, Nea Hili, GR-68131 Alexandroupolis, Greece
| | - Paraskevi Malea
- Department of Botany, School of Biology, Aristotle University of Thessaloniki, GR-54124 Thessaloniki, Greece
| | - Theodoros Kevrekidis
- Laboratory of Environmental Research and Education, Democritus University of Thrace, Nea Hili, GR-68131 Alexandroupolis, Greece.
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48
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Andréfouet S, Derville S, Buttin J, Dirberg G, Wabnitz CCC, Garrigue C, Payri CE. Nation-wide hierarchical and spatially-explicit framework to characterize seagrass meadows in New-Caledonia, and its potential application to the Indo-Pacific. MARINE POLLUTION BULLETIN 2021; 173:113036. [PMID: 34649208 DOI: 10.1016/j.marpolbul.2021.113036] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 09/26/2021] [Accepted: 10/03/2021] [Indexed: 06/13/2023]
Abstract
Despite their ecological role and multiple contributions to human societies, the distribution of Indo-Pacific seagrasses remains poorly known in many places. Herein, we outline a hierarchical spatially-explicit assessment framework to derive nation-wide synoptic knowledge of the distribution of seagrass species and communities. We applied the framework to New Caledonia (southwest Pacific Ocean) and its 36,200 km2 of reefs and lagoons. The framework is primarily field-based but can leverage various habitat maps derived from remote sensing. Field data collection can be stratified by map products and retrospectively contribute to developing new seagrass distribution maps. Airborne and satellite remote sensing alone do not allow for the spatial generalisation of the finest attributes (species distribution and types of seagrass beds), but staged stratified field sampling provides synoptic views of these attributes. Using three examples, we discuss how the hierarchical and spatial information generated from this framework's application can inform conservation and management objectives.
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Affiliation(s)
- Serge Andréfouet
- UMR-9220 ENTROPIE (Institut de Recherche pour le Développement, Université de la Réunion, Ifremer, CNRS, Université de la Nouvelle-Calédonie), 101, promenade Roger-Laroque Anse Vata, BP A5, 98848 Noumea, New Caledonia.
| | - Solène Derville
- UMR-9220 ENTROPIE (Institut de Recherche pour le Développement, Université de la Réunion, Ifremer, CNRS, Université de la Nouvelle-Calédonie), 101, promenade Roger-Laroque Anse Vata, BP A5, 98848 Noumea, New Caledonia
| | - Julie Buttin
- UMR-9220 ENTROPIE (Institut de Recherche pour le Développement, Université de la Réunion, Ifremer, CNRS, Université de la Nouvelle-Calédonie), 101, promenade Roger-Laroque Anse Vata, BP A5, 98848 Noumea, New Caledonia
| | - Guillaume Dirberg
- Muséum National d'Histoire Naturelle, UMR BOREA 7208 CNRS-UCN-UA-IRD, Paris, France
| | - Colette C C Wabnitz
- Institute for the Oceans and Fisheries, University of British Columbia, Vancouver, B.C. V6T 1Z4, Canada; Stanford Center for Ocean Solutions, Stanford University, Stanford, CA 94305, United States
| | - Claire Garrigue
- UMR-9220 ENTROPIE (Institut de Recherche pour le Développement, Université de la Réunion, Ifremer, CNRS, Université de la Nouvelle-Calédonie), 101, promenade Roger-Laroque Anse Vata, BP A5, 98848 Noumea, New Caledonia
| | - Claude E Payri
- UMR-9220 ENTROPIE (Institut de Recherche pour le Développement, Université de la Réunion, Ifremer, CNRS, Université de la Nouvelle-Calédonie), 101, promenade Roger-Laroque Anse Vata, BP A5, 98848 Noumea, New Caledonia
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49
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Seasonal Dynamics of Bathyarchaeota-Dominated Benthic Archaeal Communities Associated with Seagrass (Zostera japonica) Meadows. JOURNAL OF MARINE SCIENCE AND ENGINEERING 2021. [DOI: 10.3390/jmse9111304] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Little is known about the seasonal dynamic of archaeal communities and their potential ecological functions in temperate seagrass ecosystems. In this study, seasonal changes in diversity, community structure, and potential metabolic functions of benthic archaea in surface sediments of two seagrass meadows along the northern Bohai Sea in China were investigated using Miseq sequencing of the 16S rRNA gene and Tax4Fun2 functional prediction. Overall, Crenarchaeota (mainly Bathy-15, Bathy-8, and Bathy-6) dominated, followed by Thermoplasmatota, Asgardarchaeota, and Halobacterota, in terms of alpha diversities and relative abundance. Significant seasonal changes in the entire archaeal community structure were observed. The major phyla Methanobacteria, Nitrosopumilales, and genus Methanolobus had higher proportions in spring, while MBG-D and Bathyarchaeota were more abundant in summer and autumn, respectively. Alpha diversities (Shannon and Simpson) were the highest in summer and the lowest in autumn (ANOVA test, p < 0.05). Salinity, total organic carbon, and total organic nitrogen were the most significant factors influencing the entire archaeal community. Higher cellulose and hemicellulose degradation potentials occurred in summer, while methane metabolism potentials were higher in winter. This study indicated that season had strong effects in modulating benthic archaeal diversity and functional potentials in the temperate seagrass ecosystems.
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50
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Carter AB, Collier C, Lawrence E, Rasheed MA, Robson BJ, Coles R. A spatial analysis of seagrass habitat and community diversity in the Great Barrier Reef World Heritage Area. Sci Rep 2021; 11:22344. [PMID: 34785693 PMCID: PMC8595360 DOI: 10.1038/s41598-021-01471-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 10/27/2021] [Indexed: 11/16/2022] Open
Abstract
The Great Barrier Reef World Heritage Area (GBRWHA) in north eastern Australia spans 2500 km of coastline and covers an area of ~ 350,000 km2. It includes one of the world’s largest seagrass resources. To provide a foundation to monitor, establish trends and manage the protection of seagrass meadows in the GBRWHA we quantified potential seagrass community extent using six random forest models that include environmental data and seagrass sampling history. We identified 88,331 km2 of potential seagrass habitat in intertidal and subtidal areas: 1111 km2 in estuaries, 16,276 km2 in coastal areas, and 70,934 km2 in reef areas. Thirty-six seagrass community types were defined by species assemblages within these habitat types using multivariate regression tree models. We show that the structure, location and distribution of the seagrass communities is the result of complex environmental interactions. These environmental conditions include depth, tidal exposure, latitude, current speed, benthic light, proportion of mud in the sediment, water type, water temperature, salinity, and wind speed. Our analysis will underpin spatial planning, can be used in the design of monitoring programs to represent the diversity of seagrass communities and will facilitate our understanding of environmental risk to these habitats.
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Affiliation(s)
- Alex B Carter
- Centre for Tropical Water & Aquatic Ecosystem Research (TropWATER), James Cook University, Building E1.016A, P.O. Box 6811, Cairns, QLD, 4870, Australia.
| | - Catherine Collier
- Centre for Tropical Water & Aquatic Ecosystem Research (TropWATER), James Cook University, Building E1.016A, P.O. Box 6811, Cairns, QLD, 4870, Australia
| | - Emma Lawrence
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) Data61, Brisbane, Australia
| | - Michael A Rasheed
- Centre for Tropical Water & Aquatic Ecosystem Research (TropWATER), James Cook University, Building E1.016A, P.O. Box 6811, Cairns, QLD, 4870, Australia
| | - Barbara J Robson
- Australian Institute of Marine Science and AIMS@JCU, Townsville, Australia
| | - Rob Coles
- Centre for Tropical Water & Aquatic Ecosystem Research (TropWATER), James Cook University, Building E1.016A, P.O. Box 6811, Cairns, QLD, 4870, Australia
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