1
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Sah MK, Naskar K, Adhikari S, Smits B, Meyer J, Somers MF. On the quantum dynamical treatment of surface vibrational modes for reactive scattering of H2 from Cu(111) at 925 K. J Chem Phys 2024; 161:014306. [PMID: 38953445 DOI: 10.1063/5.0217639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Accepted: 06/13/2024] [Indexed: 07/04/2024] Open
Abstract
We construct the effective Hartree potential for H2 on Cu(111) as introduced in our earlier work [Dutta et al., J. Chem. Phys. 154, 104103 (2021), and Dutta et al., J. Chem. Phys. 157, 194112 (2022)] starting from the same gas-metal interaction potential obtained for 0 K. Unlike in that work, we now explicitly account for surface expansion at 925 K and investigate different models to describe the surface vibrational modes: (i) a cluster model yielding harmonic normal modes at 0 K and (ii) slab models resulting in phonons at 0 and 925 K according to the quasi-harmonic approximation-all consistently calculated at the density functional theory level with the same exchange-correlation potential. While performing dynamical calculations for the H2(v = 0, j = 0)-Cu(111) system employing Hartree potential constructed with 925 K phonons and surface temperature, (i) the calculated chemisorption probabilities are the highest compared to the other approaches over the energy domain and (ii) the threshold for the reaction probability is the lowest, in close agreement with the experiment. Although the survival probabilities (v' = 0) depict the expected trend (lower in magnitude), the excitation probabilities (v' = 1) display a higher magnitude since the 925 K phonons and surface temperature are more effective for the excitation process compared to the phonons/normal modes obtained from the other approaches investigated to describe the surface.
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Affiliation(s)
- Mantu Kumar Sah
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Koushik Naskar
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Satrajit Adhikari
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Bauke Smits
- Leiden Institute of Chemistry, Gorlaeus Building, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Jörg Meyer
- Leiden Institute of Chemistry, Gorlaeus Building, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Mark F Somers
- Leiden Institute of Chemistry, Gorlaeus Building, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
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2
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Tong J, Fu Y, Domaretskiy D, Della Pia F, Dagar P, Powell L, Bahamon D, Huang S, Xin B, Costa Filho RN, Vega LF, Grigorieva IV, Peeters FM, Michaelides A, Lozada-Hidalgo M. Control of proton transport and hydrogenation in double-gated graphene. Nature 2024; 630:619-624. [PMID: 38898294 PMCID: PMC11186788 DOI: 10.1038/s41586-024-07435-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Accepted: 04/17/2024] [Indexed: 06/21/2024]
Abstract
The basal plane of graphene can function as a selective barrier that is permeable to protons1,2 but impermeable to all ions3,4 and gases5,6, stimulating its use in applications such as membranes1,2,7,8, catalysis9,10 and isotope separation11,12. Protons can chemically adsorb on graphene and hydrogenate it13,14, inducing a conductor-insulator transition that has been explored intensively in graphene electronic devices13-17. However, both processes face energy barriers1,12,18 and various strategies have been proposed to accelerate proton transport, for example by introducing vacancies4,7,8, incorporating catalytic metals1,19 or chemically functionalizing the lattice18,20. But these techniques can compromise other properties, such as ion selectivity21,22 or mechanical stability23. Here we show that independent control of the electric field, E, at around 1 V nm-1, and charge-carrier density, n, at around 1 × 1014 cm-2, in double-gated graphene allows the decoupling of proton transport from lattice hydrogenation and can thereby accelerate proton transport such that it approaches the limiting electrolyte current for our devices. Proton transport and hydrogenation can be driven selectively with precision and robustness, enabling proton-based logic and memory graphene devices that have on-off ratios spanning orders of magnitude. Our results show that field effects can accelerate and decouple electrochemical processes in double-gated 2D crystals and demonstrate the possibility of mapping such processes as a function of E and n, which is a new technique for the study of 2D electrode-electrolyte interfaces.
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Affiliation(s)
- J Tong
- Department of Physics and Astronomy, University of Manchester, Manchester, UK.
- National Graphene Institute, University of Manchester, Manchester, UK.
| | - Y Fu
- Department of Physics and Astronomy, University of Manchester, Manchester, UK
- National Graphene Institute, University of Manchester, Manchester, UK
| | - D Domaretskiy
- Department of Physics and Astronomy, University of Manchester, Manchester, UK
| | - F Della Pia
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK
| | - P Dagar
- Department of Physics and Astronomy, University of Manchester, Manchester, UK
- National Graphene Institute, University of Manchester, Manchester, UK
| | - L Powell
- Department of Physics and Astronomy, University of Manchester, Manchester, UK
| | - D Bahamon
- Research and Innovation Center on CO2 and Hydrogen (RICH Center) and Chemical Engineering Department, Khalifa University, Abu Dhabi, United Arab Emirates
- Research and Innovation Center for Graphene and 2D materials (RIC2D), Khalifa University, Abu Dhabi, United Arab Emirates
| | - S Huang
- Department of Physics and Astronomy, University of Manchester, Manchester, UK
- National Graphene Institute, University of Manchester, Manchester, UK
| | - B Xin
- Department of Physics and Astronomy, University of Manchester, Manchester, UK
- National Graphene Institute, University of Manchester, Manchester, UK
| | - R N Costa Filho
- Departamento de Física, Universidade Federal do Ceará, Fortaleza, Brazil
| | - L F Vega
- Research and Innovation Center on CO2 and Hydrogen (RICH Center) and Chemical Engineering Department, Khalifa University, Abu Dhabi, United Arab Emirates
- Research and Innovation Center for Graphene and 2D materials (RIC2D), Khalifa University, Abu Dhabi, United Arab Emirates
| | - I V Grigorieva
- Department of Physics and Astronomy, University of Manchester, Manchester, UK
| | - F M Peeters
- Departamento de Física, Universidade Federal do Ceará, Fortaleza, Brazil
- Departement Fysica, Universiteit Antwerpen, Antwerp, Belgium
| | - A Michaelides
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK
| | - M Lozada-Hidalgo
- Department of Physics and Astronomy, University of Manchester, Manchester, UK.
- National Graphene Institute, University of Manchester, Manchester, UK.
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3
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Schatz GC, Wodtke AM, Yang X. Spiers Memorial Lecture: New directions in molecular scattering. Faraday Discuss 2024. [PMID: 38764350 DOI: 10.1039/d4fd00015c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/21/2024]
Abstract
The field of molecular scattering is reviewed as it pertains to gas-gas as well as gas-surface chemical reaction dynamics. We emphasize the importance of collaboration of experiment and theory, from which new directions of research are being pursued on increasingly complex problems. We review both experimental and theoretical advances that provide the modern toolbox available to molecular-scattering studies. We distinguish between two classes of work. The first involves simple systems and uses experiment to validate theory so that from the validated theory, one may learn far more than could ever be measured in the laboratory. The second class involves problems of great complexity that would be difficult or impossible to understand without a partnership of experiment and theory. Key topics covered in this review include crossed-beams reactive scattering and scattering at extremely low energies, where quantum effects dominate. They also include scattering from surfaces, reactive scattering and kinetics at surfaces, and scattering work done at liquid surfaces. The review closes with thoughts on future promising directions of research.
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Affiliation(s)
- George C Schatz
- Dept of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
| | - Alec M Wodtke
- Institute for Physical Chemistry, Georg August University, Goettingen, Germany
- Max Planck Institute for Multidisciplinary Natural Sciences, Goettingen, Germany.
- International Center for the Advanced Studies of Energy Conversion, Georg August University, Goettingen, Germany
| | - Xueming Yang
- Dalian Institute for Chemical Physics, Chinese Academy of Sciences, Dalian, China
- Department of Chemistry, College of Science, Southern University of Science and Technology, Shenzhen, China
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4
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Hasecke L, Mata RA. Optimization of Quantum Nuclei Positions with the Adaptive Nuclear-Electronic Orbital Approach. J Phys Chem A 2024; 128:3205-3211. [PMID: 38619054 PMCID: PMC11056972 DOI: 10.1021/acs.jpca.4c00096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 03/08/2024] [Accepted: 03/08/2024] [Indexed: 04/16/2024]
Abstract
The use of multicomponent methods has become increasingly popular over the last years. Under this framework, nuclei (commonly protons) are treated quantum mechanically on the same footing as the electronic structure problem. Under the use of atomic-centered orbitals, this can lead to some complications as the ideal location of the nuclear basis centers must be optimized. In this contribution, we propose a straightforward approach to determine the position of such centers within the self-consistent cycle of a multicomponent calculation, making use of individual proton charge centroids. We test the method on model systems including the water dimer, a protonated water tetramer, and a porphine system. Comparing to numerical gradient calculations, the adaptive nuclear-electronic orbital (NEO) procedure is able to converge the basis centers to within a few cents of an Ångström and with less than 0.1 kcal/mol differences in absolute energies. This is achieved in one single calculation and with a small added computational effort of up to 80% compared to a regular NEO- self-consistent field run. An example application for the human transketolase proton wire is also provided.
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Affiliation(s)
- Lukas Hasecke
- Institute of Physical Chemistry, University
of Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
| | - Ricardo A. Mata
- Institute of Physical Chemistry, University
of Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
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5
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Jiang Z, Huang H, Lu C, Zhou L, Pan S, Qiang J, Shi M, Ye Z, Lu P, Ni H, Zhang W, Wu J. Ultrafast photoinduced C-H bond formation from two small inorganic molecules. Nat Commun 2024; 15:2854. [PMID: 38565554 PMCID: PMC10987588 DOI: 10.1038/s41467-024-47137-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Accepted: 03/21/2024] [Indexed: 04/04/2024] Open
Abstract
The formation of carbon-hydrogen (C-H) bonds via the reaction of small inorganic molecules is of great significance for understanding the fundamental transition from inorganic to organic matter, and thus the origin of life. Yet, the detailed mechanism of the C-H bond formation, particularly the time scale and molecular-level control of the dynamics, remain elusive. Here, we investigate the light-induced bimolecular reaction starting from a van der Waals molecular dimer composed of two small inorganic molecules, H2 and CO. Employing reaction microscopy driven by a tailored two-color light field, we identify the pathways leading to C-H photobonding thereby producing HCO+ ions, and achieve coherent control over the reaction dynamics. Using a femtosecond pump-probe scheme, we capture the ultrafast formation time, i.e., 198 ± 16 femtoseconds. The real-time visualization and coherent control of the dynamics contribute to a deeper understanding of the most fundamental bimolecular reactions responsible for C-H bond formation, thus contributing to elucidate the emergence of organic components in the universe.
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Affiliation(s)
- Zhejun Jiang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China
| | - Hao Huang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China
| | - Chenxu Lu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China
| | - Lianrong Zhou
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China
| | - Shengzhe Pan
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China
| | - Junjie Qiang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China
| | - Menghang Shi
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China
| | - Zhengjun Ye
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China
| | - Peifen Lu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China
| | - Hongcheng Ni
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China.
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi, 030006, China.
| | - Wenbin Zhang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China.
| | - Jian Wu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200241, China.
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi, 030006, China.
- Chongqing Key Laboratory of Precision Optics, Chongqing Institute of East China Normal University, Chongqing, 401121, China.
- CAS Center for Excellence in Ultra-intense Laser Science, Shanghai, 201800, China.
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6
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Liebetrau M, Dorenkamp Y, Bünermann O, Behler J. Hydrogen atom scattering at the Al 2O 3(0001) surface: a combined experimental and theoretical study. Phys Chem Chem Phys 2024; 26:1696-1708. [PMID: 38126723 DOI: 10.1039/d3cp04729f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2023]
Abstract
Investigating atom-surface interactions is the key to an in-depth understanding of chemical processes at interfaces, which are of central importance in many fields - from heterogeneous catalysis to corrosion. In this work, we present a joint experimental and theoretical effort to gain insights into the atomistic details of hydrogen atom scattering at the α-Al2O3(0001) surface. Surprisingly, this system has been hardly studied to date, although hydrogen atoms as well as α-Al2O3 are omnipresent in catalysis as reactive species and support oxide, respectively. We address this system by performing hydrogen atom beam scattering experiments and molecular dynamics (MD) simulations based on a high-dimensional machine learning potential trained to density functional theory data. Using this combination of methods we are able to probe the properties of the multidimensional potential energy surface governing the scattering process. Specifically, we compare the angular distribution and the kinetic energy loss of the scattered atoms obtained in experiment with a large number of MD trajectories, which, moreover, allow to identify the underlying impact sites at the surface.
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Affiliation(s)
- Martin Liebetrau
- Lehrstuhl für Theoretische Chemie II, Ruhr-Universität Bochum, D-44780 Bochum, Germany.
- Research Center Chemical Sciences and Sustainability, Research Alliance Ruhr, D-44780 Bochum, Germany
| | - Yvonne Dorenkamp
- Georg-August-Universität Göttingen, Institut für Physikalische Chemie, Tammannstraße 6, D-37077 Göttingen, Germany.
| | - Oliver Bünermann
- Georg-August-Universität Göttingen, Institut für Physikalische Chemie, Tammannstraße 6, D-37077 Göttingen, Germany.
- Department of Dynamics at Surfaces, Max-Planck-Institute for Multidisciplinary Sciences, Am Fassberg 11, D-37007 Göttingen, Germany
- International Center of Advanced Studies of Energy Conversion, Georg-August-Universität Göttingen, Tammannstraße 6, D-37077 Göttingen, Germany
| | - Jörg Behler
- Lehrstuhl für Theoretische Chemie II, Ruhr-Universität Bochum, D-44780 Bochum, Germany.
- Research Center Chemical Sciences and Sustainability, Research Alliance Ruhr, D-44780 Bochum, Germany
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7
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Shi L, Schröder M, Meyer HD, Peláez D, Wodtke AM, Golibrzuch K, Schönemann AM, Kandratsenka A, Gatti F. Quantum and classical molecular dynamics for H atom scattering from graphene. J Chem Phys 2023; 159:194102. [PMID: 37965999 DOI: 10.1063/5.0176655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 10/25/2023] [Indexed: 11/16/2023] Open
Abstract
This work presents systematic comparisons between classical molecular dynamics (cMD) and quantum dynamics (QD) simulations of 15-dimensional and 75-dimensional models in their description of H atom scattering from graphene. We use an experimentally validated full-dimensional neural network potential energy surface of a hydrogen atom interacting with a large cell of graphene containing 24 carbon atoms. For quantum dynamics simulations, we apply Monte Carlo canonical polyadic decomposition to transform the original potential energy surface (PES) into a sum of products form and use the multi-layer multi-configuration time-dependent Hartree method to simulate the quantum scattering of a hydrogen or deuterium atom with an initial kinetic energy of 1.96 or 0.96 eV and an incident angle of 0°, i.e., perpendicular to the graphene surface. The cMD and QD initial conditions have been carefully chosen in order to be as close as possible. Our results show little differences between cMD and QD simulations when the incident energy of the H atom is equal to 1.96 eV. However, a large difference in sticking probability is observed when the incident energy of the H atom is equal to 0.96 eV, indicating the predominance of quantum effects. To the best of our knowledge, our work provides the first benchmark of quantum against classical simulations for a system of this size with a realistic PES. Additionally, new projectors are implemented in the Heidelberg multi-configuration time-dependent Hartree package for the calculation of the atom scattering energy transfer distribution as a function of outgoing angles.
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Affiliation(s)
- Lei Shi
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay UMR 8214, 91405 Orsay, France
| | - Markus Schröder
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany
| | - Hans-Dieter Meyer
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany
| | - Daniel Peláez
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay UMR 8214, 91405 Orsay, France
| | - Alec M Wodtke
- Department of Dynamics at Surfaces, Max Planck Institute for Multidisciplinary Sciences, am Faßberg 11, 37077 Göttingen, Germany
| | - Kai Golibrzuch
- Department of Dynamics at Surfaces, Max Planck Institute for Multidisciplinary Sciences, am Faßberg 11, 37077 Göttingen, Germany
| | - Anna-Maria Schönemann
- Department of Dynamics at Surfaces, Max Planck Institute for Multidisciplinary Sciences, am Faßberg 11, 37077 Göttingen, Germany
| | - Alexander Kandratsenka
- Department of Dynamics at Surfaces, Max Planck Institute for Multidisciplinary Sciences, am Faßberg 11, 37077 Göttingen, Germany
| | - Fabien Gatti
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay UMR 8214, 91405 Orsay, France
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8
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Bühler J, Roncin P, Brand C. Describing the scattering of keV protons through graphene. Front Chem 2023; 11:1291065. [PMID: 38033471 PMCID: PMC10687178 DOI: 10.3389/fchem.2023.1291065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 11/06/2023] [Indexed: 12/02/2023] Open
Abstract
Implementing two-dimensional materials in technological solutions requires fast, economic, and non-destructive tools to ensure efficient characterization. In this context, scattering of keV protons through free-standing graphene was proposed as an analytical tool. Here, we critically evaluate the predicted effects using classical simulations including a description of the lattice's thermal motion and the membrane corrugation via statistical averaging. Our study shows that the zero-point motion of the lattice atoms alone leads to considerable broadening of the signal that is not properly described by thermal averaging of the interaction potential. In combination with the non-negligible probability for introducing defects, it limits the prospect of proton scattering at 5 keV as an analytic tool.
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Affiliation(s)
- Jakob Bühler
- Department of Quantum Nanophysics, German Aerospace Center (DLR), Institute of Quantum Technologies, Ulm, Germany
| | - Philippe Roncin
- Institut des Sciences Moléculaires d’Orsay (ISMO), Centre national de la recherche scientifique (CNRS), University Paris-Sud, Université Paris-Saclay, Orsay, France
| | - Christian Brand
- Department of Quantum Nanophysics, German Aerospace Center (DLR), Institute of Quantum Technologies, Ulm, Germany
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9
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Shao X, Paetow L, Tuckerman ME, Pavanello M. Machine learning electronic structure methods based on the one-electron reduced density matrix. Nat Commun 2023; 14:6281. [PMID: 37805614 PMCID: PMC10560258 DOI: 10.1038/s41467-023-41953-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 09/18/2023] [Indexed: 10/09/2023] Open
Abstract
The theorems of density functional theory (DFT) establish bijective maps between the local external potential of a many-body system and its electron density, wavefunction and, therefore, one-particle reduced density matrix. Building on this foundation, we show that machine learning models based on the one-electron reduced density matrix can be used to generate surrogate electronic structure methods. We generate surrogates of local and hybrid DFT, Hartree-Fock and full configuration interaction theories for systems ranging from small molecules such as water to more complex compounds like benzene and propanol. The surrogate models use the one-electron reduced density matrix as the central quantity to be learned. From the predicted density matrices, we show that either standard quantum chemistry or a second machine-learning model can be used to compute molecular observables, energies, and atomic forces. The surrogate models can generate essentially anything that a standard electronic structure method can, ranging from band gaps and Kohn-Sham orbitals to energy-conserving ab-initio molecular dynamics simulations and infrared spectra, which account for anharmonicity and thermal effects, without the need to employ computationally expensive algorithms such as self-consistent field theory. The algorithms are packaged in an efficient and easy to use Python code, QMLearn, accessible on popular platforms.
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Affiliation(s)
- Xuecheng Shao
- Department of Chemistry, Rutgers University, Newark, NJ, 07102, USA.
| | - Lukas Paetow
- Department of Chemistry, Rutgers University, Newark, NJ, 07102, USA
| | - Mark E Tuckerman
- Department of Chemistry, New York University, New York, NY, 10003, USA.
- Courant Institute of Mathematical Science, New York University, New York, NY, 10003, USA.
- Simons Center for Computational Physical Chemistry, New York University, New York, NY, 10003, USA.
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 200062, Shanghai, China.
| | - Michele Pavanello
- Department of Chemistry, Rutgers University, Newark, NJ, 07102, USA.
- Department of Physics, Rutgers University, Newark, NJ, 07102, USA.
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10
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Zhang L, Zuo J, Suleimanov YV, Guo H. Ring Polymer Molecular Dynamics Approach to Quantum Dissociative Chemisorption Rates. J Phys Chem Lett 2023; 14:7118-7125. [PMID: 37531595 DOI: 10.1021/acs.jpclett.3c01848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/04/2023]
Abstract
A ring polymer molecular dynamics (RPMD) method is proposed for the calculation of the dissociative chemisorption rate coefficient on surfaces. The RPMD rate theory is capable of handling quantum effects such as the zero-point energy and tunneling in dissociative chemisorption, while it relies on classical trajectories for the simulation. Applications to H2 dissociative chemisorption are demonstrated. For the highly activated process on Ag(111), strong deviations from Arrhenius behavior are found at low temperatures and attributed to tunneling. On Pt(111), where the dissociation has a barrierless pathway, the RPMD rate coefficient is found to agree with the experimentally derived thermal sticking coefficient within a factor of 2 over a large temperature range. Significant quantum effects are also found.
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Affiliation(s)
- Liang Zhang
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Junxiang Zuo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Yury V Suleimanov
- American Association for the Advancement of Science, 1200 New York Ave NW, Washington, D.C. 20005, United States
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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11
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Li C, Li Y, Jiang B. First-principles surface reaction rates by ring polymer molecular dynamics and neural network potential: role of anharmonicity and lattice motion. Chem Sci 2023; 14:5087-5098. [PMID: 37206404 PMCID: PMC10189860 DOI: 10.1039/d2sc06559b] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 04/05/2023] [Indexed: 08/04/2023] Open
Abstract
Elementary gas-surface processes are essential steps in heterogeneous catalysis. A predictive understanding of catalytic mechanisms remains challenging due largely to difficulties in accurately characterizing the kinetics of such steps. Experimentally, thermal rates for elementary surface reactions can now be measured using a novel velocity imaging technique, providing a stringent testing ground for ab initio rate theories. Here, we propose to combine ring polymer molecular dynamics (RPMD) rate theory with state-of-the-art first-principles-determined neural network potential to calculate surface reaction rates. Taking NO desorption from Pd(111) as an example, we show that the harmonic approximation and the neglect of lattice motion in the commonly-used transition state theory overestimates and underestimates the entropy change during the desorption process, respectively, leading to opposite errors in rate coefficient predictions and artificial error cancellations. Including anharmonicity and lattice motion, our results reveal a generally neglected surface entropy change due to significant local structural change during desorption and obtain the right answer for the right reasons. Although quantum effects are found to be less important in this system, the proposed approach establishes a more reliable theoretical benchmark for accurately predicting the kinetics of elementary gas-surface processes.
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Affiliation(s)
- Chen Li
- Key Laboratory of Precision and Intelligent Chemistry, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China Hefei Anhui 230026 China
| | - Yongle Li
- Department of Physics, International Center of Quantum and Molecular Structures, Shanghai Key Laboratory of High Temperature Superconductors, Shanghai University Shanghai 200444 China
| | - Bin Jiang
- Key Laboratory of Precision and Intelligent Chemistry, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China Hefei Anhui 230026 China
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12
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Lipton-Duffin J, MacLeod J. Innovations in nanosynthesis: emerging techniques for precision, scalability, and spatial control in reactions of organic molecules on solid surfaces. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2023; 35:183001. [PMID: 36876935 DOI: 10.1088/1361-648x/acbc01] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2022] [Accepted: 02/13/2023] [Indexed: 06/18/2023]
Abstract
The surface science-based approach to synthesising new organic materials on surfaces has gained considerable attention in recent years, owing to its success in facilitating the formation of novel 0D, 1D and 2D architectures. The primary mechanism used to date has been the catalytic transformation of small organic molecules through substrate-enabled reactions. In this Topical Review, we provide an overview of alternate approaches to controlling molecular reactions on surfaces. These approaches include light, electron and ion-initiated reactions, electrospray ionisation deposition-based techniques, collisions of neutral atoms and molecules, and superhydrogenation. We focus on the opportunities afforded by these alternative approaches, in particular where they may offer advantages in terms of selectivity, spatial control or scalability.
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Affiliation(s)
- Josh Lipton-Duffin
- School of Chemistry and Physics and Centre for Materials Science, Queensland University of Technology (QUT), Brisbane, Australia
- Central Analytical Research Facility, Queensland University of Technology (QUT), Brisbane, Australia
| | - Jennifer MacLeod
- School of Chemistry and Physics and Centre for Materials Science, Queensland University of Technology (QUT), Brisbane, Australia
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13
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He N, Huang M, Evangelista FA. CO Inversion on a NaCl(100) Surface: A Multireference Quantum Embedding Study. J Phys Chem A 2023; 127:1975-1987. [PMID: 36799901 PMCID: PMC9986868 DOI: 10.1021/acs.jpca.2c05844] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Abstract
We develop a multireference quantum embedding model to investigate a recent experimental observation of the isomerization of vibrationally excited CO molecules on a NaCl(100) surface [Science 2020, 367, 175-178]. To explore this mechanism, we built a reduced potential energy surface of CO interacting with NaCl(100) using a second-order multireference perturbation theory, modeling the adsorbate-surface interaction with our previously developed active space embedding theory (ASET). We considered an isolated CO molecule on NaCl(100) and a high-coverage CO monolayer (1/1), and for both we generated potential energy surfaces parametrized by the CO stretching, adsorption, and inversion coordinates. These surfaces are used to determine stationary points and adsorption energies and to perform a vibrational analysis of the states relevant to the inversion mechanism. We found that for near-equilibrium bond lengths, CO adsorbed in the C-down configuration is lower in energy than in the O-down configuration. Stretching of the C-O bond reverses the energetic order of these configurations, supporting the accepted isomerization mechanism. The vibrational constants obtained from these potential energy surfaces show a small (< 10 cm-1) blue- and red-shift for the C-down and O-down configurations, respectively, in agreement with experimental assignments and previous theoretical studies. Our vibrational analysis of the monolayer case suggests that the O-down configuration is energetically more stable than the C-down one beyond the 16th vibrational excited state of CO, a value slightly smaller than the one from quasi-classical trajectory simulations (22nd) and consistent with the experiment. Our analysis suggests that CO-CO interactions in the monolayer play an important role in stabilizing highly vibrationally excited states in the O-down configuration and reducing the barrier between the C-down and O-down geometries, therefore playing a crucial role in the inversion mechanism.
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Affiliation(s)
- Nan He
- Department of Chemistry and Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Meng Huang
- Department of Chemistry and Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Francesco A Evangelista
- Department of Chemistry and Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
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14
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Hydrogen atom collisions with a semiconductor efficiently promote electrons to the conduction band. Nat Chem 2023; 15:326-331. [PMID: 36411362 PMCID: PMC9986106 DOI: 10.1038/s41557-022-01085-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 10/06/2022] [Indexed: 11/22/2022]
Abstract
The Born-Oppenheimer approximation is the keystone of modern computational chemistry and there is wide interest in understanding under what conditions it remains valid. Hydrogen atom scattering from insulator, semi-metal and metal surfaces has helped provide such information. The approximation is adequate for insulators and for metals it fails, but not severely. Here we present hydrogen atom scattering from a semiconductor surface: Ge(111)c(2 × 8). Experiments show bimodal energy-loss distributions revealing two channels. Molecular dynamics trajectories within the Born-Oppenheimer approximation reproduce one channel quantitatively. The second channel transfers much more energy and is absent in simulations. It grows with hydrogen atom incidence energy and exhibits an energy-loss onset equal to the Ge surface bandgap. This leads us to conclude that hydrogen atom collisions at the surface of a semiconductor are capable of promoting electrons from the valence to the conduction band with high efficiency. Our current understanding fails to explain these observations.
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15
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Greenwood T, AlSalem H, Koehler SPK. Velocity-Selected Rotational State Distributions of Nitric Oxide Scattered off Graphene Revealed by Surface-Velocity Map Imaging. J Phys Chem A 2023; 127:1124-1129. [PMID: 36700532 PMCID: PMC9923741 DOI: 10.1021/acs.jpca.2c06196] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
We report velocity-dependent internal energy distributions of nitric oxide molecules, NO, scattered off graphene supported on gold to further explore the dynamics of the collision process between NO radicals and graphene. These experiments were performed by directing a molecular beam of NO onto graphene in a surface-velocity map imaging setup, which allowed us to record internal energy distributions of the NO radicals as a function of their velocity. We do not observe bond formation but (1) major contributions from direct inelastic scattering and (2) a smaller trapping-desorption component where some physisorbed NO molecules have residence times on the order of microseconds. This is in agreement with our classical molecular dynamics simulations which also observe a small proportion of two- and multi-bounce collisions events but likewise a small proportion of NO radicals trapped at the surface for the entire length of the molecular dynamics simulations (a few picoseconds). Despite a collision energy of 0.31 eV, which would be sufficient to populate NO(v = 1), we do not detect vibrationally excited nitric oxide.
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Affiliation(s)
- Thomas Greenwood
- Department
of Natural Sciences, Manchester Metropolitan
University, ManchesterM1 5GD, U.K.
| | - Huda AlSalem
- Department
of Chemistry, College of Science, Princess
Nourah bint Abdulrahman University, P.O.
Box 84428, Riyadh11671, Saudi Arabia
| | - Sven P. K. Koehler
- Institut
für Verfahrenstechnik, Energietechnik und Klimaschutz, Hochschule Hannover, Ricklinger Stadtweg 120, 30459Hannover, Germany,
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16
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Feng S, Luo Y, Jiang J, Wang S. Examining the Long-Range Effect in Very Long Graphene Nanoribbons: A First-Principles Study. J Phys Chem Lett 2022; 13:11223-11229. [PMID: 36445836 DOI: 10.1021/acs.jpclett.2c03184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
The role of long-range effect on the modulation of the electronic structure of graphene nanoribbons has been little studied due to the limitations of existing theoretical and computational methods. By splitting a molecule top-down and calculating and jointing the Fock matrix of fragments, we developed a computational method suitable for large-size molecules with random doping and arbitrary geometry. Utilizing this method, we achieved the study of the effects of dopants and curvature on graphene nanoribbons (GNRs). It reveals that both dopants and curvature can change the charge distribution of GNRs, while the influence of dopants is more significant and can extend up to 1-3 nm. The electronic excitation properties of GNRs are also largely modified by the doping state or nonuniform curvature. Our findings provide not only a feasible approach for studying the electronic structure of large-size molecules but also the possibility to improve the properties of graphene-based materials by dopants and local curvature.
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Affiliation(s)
- Shuo Feng
- Hefei National Research Center for Physical Sciences at the Microscale, Collaborative Innovation Center of Chemistry for Energy Materials, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Yi Luo
- Hefei National Research Center for Physical Sciences at the Microscale, Collaborative Innovation Center of Chemistry for Energy Materials, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Jun Jiang
- Hefei National Research Center for Physical Sciences at the Microscale, Collaborative Innovation Center of Chemistry for Energy Materials, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Song Wang
- Hefei National Research Center for Physical Sciences at the Microscale, Collaborative Innovation Center of Chemistry for Energy Materials, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
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17
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Greenwood T, Koehler SPK. Molecular Dynamics Simulations of Nitric Oxide Scattering Off Graphene. Chemphyschem 2022; 23:e202200216. [PMID: 35894260 PMCID: PMC9804444 DOI: 10.1002/cphc.202200216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 07/25/2022] [Indexed: 01/05/2023]
Abstract
We performed classical molecular dynamics simulations to model the scattering process of nitric oxide, NO, off graphene supported on gold. This is motivated by our desire to probe the energy transfer in collisions with graphene. Since many of these collision systems comprising of graphene and small molecules have been shown to scatter non-reactively, classical molecular dynamics appear to describe such systems sufficiently. We directed thousands of trajectories of NO molecules onto graphene along the surface normal, while varying impact position, but also speed, orientation, and rotational excitation of the nitric oxide, and compare the results with experimental data. While experiment and theory do not match quantitatively, we observe agreement that the relative amount of kinetic energy lost during the collision increases with increasing initial kinetic energy of the NO. Furthermore, while at higher collision energies, all NO molecules lose some energy, and the vast majority of NO is scattered back, in contrast at low impact energies, the fraction of those nitric oxide molecules that are trapped at the surface increases, and some NO molecules even gain some kinetic energy during the collision process. The collision energy seems to preferentially go into the collective motion of the carbon atoms in the graphene sheet.
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Affiliation(s)
- Thomas Greenwood
- Department of Natural SciencesManchester Metropolitan UniversityM1 5GDManchesterUK
| | - Sven P. K. Koehler
- Department of Natural SciencesManchester Metropolitan UniversityM1 5GDManchesterUK,Fakultät II, Hochschule HannoverRicklinger Stadtweg 12030459HannoverGermany
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18
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Zhang Y, Lin Q, Jiang B. Atomistic neural network representations for chemical dynamics simulations of molecular, condensed phase, and interfacial systems: Efficiency, representability, and generalization. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Yaolong Zhang
- Department of Chemical Physics, School of Chemistry and Materials Science, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes University of Science and Technology of China Hefei Anhui China
| | - Qidong Lin
- Department of Chemical Physics, School of Chemistry and Materials Science, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes University of Science and Technology of China Hefei Anhui China
| | - Bin Jiang
- Department of Chemical Physics, School of Chemistry and Materials Science, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes University of Science and Technology of China Hefei Anhui China
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19
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Golibrzuch K, Walpole V, Schönemann AM, Wodtke AM. Generation of Sub-nanosecond H Atom Pulses for Scattering from Single-Crystal Epitaxial Graphene. J Phys Chem A 2022; 126:8101-8110. [PMID: 36244013 PMCID: PMC9639161 DOI: 10.1021/acs.jpca.2c05364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
![]()
Pulsed molecular beams allow high-density gas samples
to be cooled
to low internal temperatures and to produce narrow speed distributions.
They are particularly useful in combination with pulsed-laser-based
detection schemes and have also been used as pump pulses in pump–probe
experiments with neutral matter. The mechanical response of pulsed
valves and chopper wheels limits the duration of these pulses typically
to about 10–100 μs. Bunch compression photolysis has
been proposed as a means to produce atomic pulses shorter than 1 ns—an
experimental capability that would allow new measurements to be made
on chemical systems. This technique employs a spatially chirped femtosecond
duration photolysis pulse that produced an ensemble of H atom photoproducts
that rebunches into a short pulse downstream. To date, this technique
could not produce strong enough beams to allow new experiments to
be carried out. In this paper, we report production of pulsed H atom
beams consistent with a 700 ps pulse duration and with sufficient
intensity to carry out differentially resolved inelastic H scattering
experiments from a graphene surface. We observe surprisingly narrow
angular distributions for H atoms incident normal to the surface.
At low incidence energies quasi-elastic scattering dominates, and
at high incidence energy we observe a strongly inelastic scattering
channel. These results provide the basis for future experiments where
the H atoms synchronously collide with a pulsed-laser-excited surface.
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Affiliation(s)
- Kai Golibrzuch
- Max-Planck-Institute for Multidisciplinary Sciences, Am Faßberg 11, and Institute for Physical Chemistry, Georg-August-University Göttingen, Tammannstrasse 6, D-37077Göttingen, Germany
| | - Victoria Walpole
- Max-Planck-Institute for Multidisciplinary Sciences, Am Faßberg 11, and Institute for Physical Chemistry, Georg-August-University Göttingen, Tammannstrasse 6, D-37077Göttingen, Germany
| | - Anna-Maria Schönemann
- Max-Planck-Institute for Multidisciplinary Sciences, Am Faßberg 11, and Institute for Physical Chemistry, Georg-August-University Göttingen, Tammannstrasse 6, D-37077Göttingen, Germany
| | - Alec M. Wodtke
- Max-Planck-Institute for Multidisciplinary Sciences, Am Faßberg 11, and Institute for Physical Chemistry, Georg-August-University Göttingen, Tammannstrasse 6, D-37077Göttingen, Germany
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20
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Chien TE, Hohmann L, Harding DJ. Near-ambient pressure velocity map imaging. J Chem Phys 2022; 157:034201. [DOI: 10.1063/5.0098495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We present a new velocity map imaging instrument for studying molecular beam surface scattering in a near-ambient pressure (NAP-VMI) environment. The instrument offers the possibility to study chemical reaction dynamics and kinetics where higher pressures are either desired or unavoidable, adding a new tool to help close the “pressure gap” between surface science and applied catalysis. NAP-VMI conditions are created by two sets of ion optics that guide ions through an aperture and map their velocities. The aperture separates the high pressure ionization region and maintains the necessary vacuum in the detector region. The performance of the NAP-VMI is demonstrated with results from N2O photodissociation and N2 scattering from a Pd(110) surface, which are compared under vacuum and at near-ambient pressure (1 × 10−3 mbar). NAP-VMI has the potential to be applied to, and useful for, a broader range of experiments, including photoelectron spectroscopy and scattering with liquid microjets.
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Affiliation(s)
- Tzu-En Chien
- Department of Chemical Engineering, KTH Royal Institute of Technology, Stockholm 100 44, Sweden
| | - Lea Hohmann
- Department of Chemical Engineering, KTH Royal Institute of Technology, Stockholm 100 44, Sweden
| | - Dan J. Harding
- Department of Chemical Engineering, KTH Royal Institute of Technology, Stockholm 100 44, Sweden
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21
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Development of Ultraslow, Monochromatic, and Mass-selected Ion Source Toward Measurement of Hydrogen Ion Permeability of Graphene. E-JOURNAL OF SURFACE SCIENCE AND NANOTECHNOLOGY 2022. [DOI: 10.1380/ejssnt.2022-032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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22
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Adsorption of hydrogen isotopes on graphene. NUCLEAR ENGINEERING AND TECHNOLOGY 2022. [DOI: 10.1016/j.net.2022.06.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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23
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Zhou X, Meng G, Guo H, Jiang B. First-Principles Insights into Adiabatic and Nonadiabatic Vibrational Energy-Transfer Dynamics during Molecular Scattering from Metal Surfaces: The Importance of Surface Reactivity. J Phys Chem Lett 2022; 13:3450-3461. [PMID: 35412832 DOI: 10.1021/acs.jpclett.2c00593] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Energy transfer is ubiquitous during molecular collisions and reactions at gas-surface interfaces. Of particular importance is vibrational energy transfer because of its relevance to bond forming and breaking. In this Perspective, we review recent first-principles studies on vibrational energy-transfer dynamics during molecular scattering from metal surfaces at the state-to-state level. Taking several representative systems as examples, we highlight the intrinsic correlation between vibrational energy transfer in nonreactive scattering and surface reactivity and how it operates in both electronically adiabatic and nonadiabatic pathways. Adiabatically, the presence of a dissociation barrier softens a bond in the impinging molecule and increases its couplings with other molecular modes and surface phonons. In the meantime, the stronger interaction between the molecule and the surface also changes the electronic structure at the barrier, resulting in an increase of nonadiabatic effects. We further discuss future prospects toward a more quantitative understanding of this important surface dynamical process.
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Affiliation(s)
- Xueyao Zhou
- Department of Chemical Physics, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Gang Meng
- Department of Chemical Physics, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Bin Jiang
- Department of Chemical Physics, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
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24
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Schmutzler SJ, Ruckhofer A, Ernst WE, Tamtögl A. Surface electronic corrugation of a one-dimensional topological metal: Bi(114). Phys Chem Chem Phys 2022; 24:9146-9155. [PMID: 35191440 PMCID: PMC9020329 DOI: 10.1039/d1cp05284e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 02/09/2022] [Indexed: 12/03/2022]
Abstract
The surface of Bi(114) is a striking example where the reduced dimensionality gives rise to structural rearrangement and new states at the surface. Here, we present a study of the surface structure and electronic corrugation of this quasi one-dimensional topological metal based on helium atom scattering (HAS) measurements. In contrast to low-index metal surfaces, upon scattering from the stepped (114) truncation of Bi, a large proportion of the incident beam is scattered into higher order diffraction channels which in combination with the large surface unit cell makes an analysis challenging. The surface electronic corrugation of Bi(114) is determined, using measurements upon scattering normal to the steps, together with quantum mechanical scattering calculations. Therefore, minimisation routines that vary the shape of the corrugation are employed, in order to minimise the deviation between the calculations and experimental scans. Furthermore, we illustrate that quantum mechanical scattering calculations can be used to determine the orientation of the in- and outgoing beam with respect to the stepped surface structure.
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Affiliation(s)
- Stephan J Schmutzler
- Institute of Experimental Physics, Graz University of Technology, 8010 Graz, Austria.
- Freie Universität Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany
| | - Adrian Ruckhofer
- Institute of Experimental Physics, Graz University of Technology, 8010 Graz, Austria.
| | - Wolfgang E Ernst
- Institute of Experimental Physics, Graz University of Technology, 8010 Graz, Austria.
| | - Anton Tamtögl
- Institute of Experimental Physics, Graz University of Technology, 8010 Graz, Austria.
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25
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Han E, Fang W, Stamatakis M, Richardson JO, Chen J. Quantum Tunnelling Driven H 2 Formation on Graphene. J Phys Chem Lett 2022; 13:3173-3181. [PMID: 35362977 DOI: 10.1021/acs.jpclett.2c00520] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
It is commonly believed that it is unfavorable for adsorbed H atoms on carbonaceous surfaces to form H2 without the help of incident H atoms. Using ring-polymer instanton theory to describe multidimensional tunnelling effects, combined with ab initio electronic structure calculations, we find that these quantum-mechanical simulations reveal a qualitatively different picture. Recombination of adsorbed H atoms, which was believed to be irrelevant at low temperature due to high barriers, is enabled by deep tunnelling, with reaction rates enhanced by tens of orders of magnitude. Furthermore, we identify a new path for H recombination that proceeds via multidimensional tunnelling but would have been predicted to be unfeasible by a simple one-dimensional description of the reaction. The results suggest that hydrogen molecule formation at low temperatures are rather fast processes that should not be ignored in experimental settings and natural environments with graphene, graphite, and other planar carbon segments.
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Affiliation(s)
- Erxun Han
- School of Physics, Peking University, Beijing 100871, China
- Interdisciplinary Institute of Light-Element Quantum Materials and Research Center for Light-Element Advanced Materials, Peking University, Beijing 100871, People's Republic of China
| | - Wei Fang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
- Department of Chemistry, Fudan University, Shanghai 200438, China
- Laboratory of Physical Chemistry, ETH Zurich, CH-8093 Zurich, Switzerland
| | - Michail Stamatakis
- Thomas Young Centre and Department of Chemical Engineering, University College London, Torrington Place, London WC1E 7JE, United Kingdom
| | | | - Ji Chen
- School of Physics, Peking University, Beijing 100871, China
- Interdisciplinary Institute of Light-Element Quantum Materials and Research Center for Light-Element Advanced Materials, Peking University, Beijing 100871, People's Republic of China
- Frontiers Science Center for Nano-Optoelectronics, Peking University, Beijing 100871, People's Republic of China
- Collaborative Innovation Center of Quantum Matter, Beijing 100871, People's Republic of China
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26
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Dumi A, Upadhyay S, Bernasconi L, Shin H, Benali A, Jordan KD. The binding of atomic hydrogen on graphene from density functional theory and diffusion Monte Carlo calculations. J Chem Phys 2022; 156:144702. [DOI: 10.1063/5.0085982] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this work, density functional theory (DFT) and diffusion Monte Carlo (DMC) methods are used to calculate the binding energy of a H atom chemisorbed on the graphene surface. The DMC value of the binding energy is about 16% smaller in magnitude than the Perdew–Burke–Ernzerhof (PBE) result. The inclusion of exact exchange through the use of the Heyd–Scuseria–Ernzerhof functional brings the DFT value of the binding energy closer in line with the DMC result. It is also found that there are significant differences in the charge distributions determined using PBE and DMC approaches.
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Affiliation(s)
- Amanda Dumi
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Shiv Upadhyay
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Leonardo Bernasconi
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
- Center for Research Computing, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Hyeondeok Shin
- Computational Science Division, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - Anouar Benali
- Computational Science Division, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - Kenneth D. Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
- Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
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27
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Abstract
Quantum embedding schemes are a promising way to extend multireference computations to large molecules with strong correlation effects localized on a small number of atoms. This work introduces a second-order active-space embedding theory [ASET(2)] which improves upon mean-field frozen embedding by treating fragment-environment interactions via an approximate canonical transformation. The canonical transformation employed in ASET(2) is formulated using the driven similarity renormalization group. The ASET(2) scheme is benchmarked on the N═N bond dissociation in pentyldiazene, the S0 to S1 excitation in 1-octene, and the interaction energy of the O2-benzene complex. The ASET(2) explicit treatment of fragment-environment interactions beyond the mean-field level generally improves the accuracy of embedded computations, and it becomes necessary to achieve an accurate description of excitation energies of 1-octene and the singlet-triplet gap of the O2-benzene complex.
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Affiliation(s)
- Nan He
- Department of Chemistry and Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Chenyang Li
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Francesco A Evangelista
- Department of Chemistry and Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
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28
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Prentice JCA. Efficiently Computing Excitations of Complex Systems: Linear-Scaling Time-Dependent Embedded Mean-Field Theory in Implicit Solvent. J Chem Theory Comput 2022; 18:1542-1554. [PMID: 35133827 PMCID: PMC9082505 DOI: 10.1021/acs.jctc.1c01133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
![]()
Quantum embedding schemes have the
potential to significantly reduce
the computational cost of first-principles calculations while maintaining
accuracy, particularly for calculations of electronic excitations
in complex systems. In this work, I combine time-dependent embedded
mean field theory (TD-EMFT) with linear-scaling density functional
theory and implicit solvation models, extending previous work within
the ONETEP code. This provides a way to perform multilevel calculations
of electronic excitations on very large systems, where long-range
environmental effects, both quantum and classical in nature, are important.
I demonstrate the power of this method by performing simulations on
a variety of systems, including a molecular dimer, a chromophore in
solution, and a doped molecular crystal. This work paves the way for
high accuracy calculations to be performed on large-scale systems
that were previously beyond the reach of quantum embedding schemes.
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Affiliation(s)
- Joseph C A Prentice
- Department of Materials, University of Oxford, Parks Road, Oxford OX1 3PH, United Kingdom
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29
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Hu C, Lin Q, Guo H, Jiang B. Influence of supercell size on Gas-Surface Scattering: A case study of CO scattering from Au(1 1 1). Chem Phys 2022. [DOI: 10.1016/j.chemphys.2021.111423] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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30
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Nagaya Y, Nakatsu H, Ogura S, Shimazaki K, Ueta H, Takeyasu K, Fukutani K. Focusing and spin polarization of atomic hydrogen beam. J Chem Phys 2021; 155:194201. [PMID: 34800952 DOI: 10.1063/5.0068251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We have developed a spin-polarized-hydrogen beam with a hexapole magnet. By combining the beam chopper and pulsed laser ionization detection, the time-of-flight of the hydrogen beam was measured, and the dependence of the beam profile on the velocity was acquired, which was consistent with the beam trajectory simulations. The spin polarization of the beam was analyzed by using the Stern-Gerlach-type magnet in combination with the spatial scan of the detection laser. The spin polarization was about 95% at a focusing condition due to the hexapole magnet. The polarization was, on the other hand, reduced to about 70% for the beam at higher velocities, which is consistent with simulation results.
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Affiliation(s)
- Y Nagaya
- Institute of Industrial Science, The University of Tokyo, Komaba Meguro-ku, Tokyo 153-8 505, Japan
| | - H Nakatsu
- Institute of Industrial Science, The University of Tokyo, Komaba Meguro-ku, Tokyo 153-8 505, Japan
| | - S Ogura
- School of Engineering, Tokyo Denki University, Senju 5 Asahi-cho, Adachi-ku, Tokyo 120-8 551, Japan
| | - K Shimazaki
- Institute of Industrial Science, The University of Tokyo, Komaba Meguro-ku, Tokyo 153-8 505, Japan
| | - H Ueta
- Advanced Science Research Center, Japan Atomic Energy Agency (JAEA), Tokai, Ibaraki 319-1 195, Japan
| | - K Takeyasu
- Institute of Industrial Science, The University of Tokyo, Komaba Meguro-ku, Tokyo 153-8 505, Japan
| | - K Fukutani
- Institute of Industrial Science, The University of Tokyo, Komaba Meguro-ku, Tokyo 153-8 505, Japan
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31
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Wang C, Ulusoy IS, Aebersold LE, Wilson AK. Multi-configuration electron-nuclear dynamics: An open-shell approach. J Chem Phys 2021; 155:154103. [PMID: 34686063 DOI: 10.1063/5.0063478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The multi-configuration electron-nuclear dynamics for open shell systems with a spin-unrestricted formalism is described. The mean fields are evaluated using second-order reduced density matrices for electronic and nuclear degrees of freedom. Applications to light-element diatomics including equilibrium geometries, electronic energies, dipole moments, and absorption spectra are presented. The von Neumann entropies for different spin states of a LiH molecule are compared.
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Affiliation(s)
- Cong Wang
- Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, Michigan 48824-1322, USA
| | - Inga S Ulusoy
- Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, Michigan 48824-1322, USA
| | - Lucas E Aebersold
- Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, Michigan 48824-1322, USA
| | - Angela K Wilson
- Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, Michigan 48824-1322, USA
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32
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Bhowmick S, Hernández MI, Campos-Martínez J, Suleimanov YV. Isotopic separation of helium through graphyne membranes: a ring polymer molecular dynamics study. Phys Chem Chem Phys 2021; 23:18547-18557. [PMID: 34612392 DOI: 10.1039/d1cp02121d] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Microscopic-level understanding of the separation mechanism for two-dimensional (2D) membranes is an active area of research due to potential implications of this class of membranes for various technological processes. Helium (He) purification from the natural resources is of particular interest due to the shortfall in its production. In this work, we applied the ring polymer molecular dynamics (RPMD) method to graphdiyne (Gr2) and graphtriyne (Gr3) 2D membranes having variable pore sizes for the separation of He isotopes, and compare for the first time with rigorous quantum calculations. We found that the transmission rate through Gr3 is many orders of magnitude greater than Gr2. The selectivity of either isotope at low temperatures is a consequence of a delicate balance between the zero-point energy effect and tunneling of 4He and 3He. In particular, a remarkable tunneling effect is reported on the Gr2 membrane at 10 K, leading to a much larger permeation of the lighter species as compared to the heavier isotope. RPMD provides an efficient approach for studying the separation of He isotopes, taking into account quantum effects of light nuclei motions at low temperatures, which classical methods fail to capture.
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Affiliation(s)
- Somnath Bhowmick
- Computation-based Science and Technology Research Center, The Cyprus Institute, 20 Konstantinou Kavafi Street, Nicosia 2121, Cyprus.
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33
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Zhou X, Zhang Y, Yin R, Hu C, Jiang B. Neural Network Representations for Studying
Gas‐Surface
Reaction Dynamics: Beyond the
Born‐Oppenheimer
Static Surface Approximation
†. CHINESE J CHEM 2021. [DOI: 10.1002/cjoc.202100303] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Xueyao Zhou
- Hefei National Laboratory for Physical Science at the Microscale, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, Department of Chemical Physics University of Science and Technology of China Hefei Anhui 230026 China
| | - Yaolong Zhang
- Hefei National Laboratory for Physical Science at the Microscale, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, Department of Chemical Physics University of Science and Technology of China Hefei Anhui 230026 China
| | - Rongrong Yin
- Hefei National Laboratory for Physical Science at the Microscale, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, Department of Chemical Physics University of Science and Technology of China Hefei Anhui 230026 China
| | - Ce Hu
- Hefei National Laboratory for Physical Science at the Microscale, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, Department of Chemical Physics University of Science and Technology of China Hefei Anhui 230026 China
| | - Bin Jiang
- Hefei National Laboratory for Physical Science at the Microscale, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, Department of Chemical Physics University of Science and Technology of China Hefei Anhui 230026 China
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34
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Li C, Liu Q, Zhang L, Li Y, Jiang B. Ring polymer molecular dynamics in gas-surface reactions: tests on initial sampling and potential energy landscape. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1941367] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Chen Li
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, People’s Republic of China
| | - Qinghua Liu
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, People’s Republic of China
| | - Liang Zhang
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, People’s Republic of China
| | - Yongle Li
- Department of Physics, International Center of Quantum and Molecular Structures and Shanghai Key Laboratory of High Temperature Superconductors, Shanghai University, Shanghai, People’s Republic of China
| | - Bin Jiang
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, People’s Republic of China
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35
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Hertl N, Kandratsenka A, Bünermann O, Wodtke AM. Multibounce and Subsurface Scattering of H Atoms Colliding with a van der Waals Solid. J Phys Chem A 2021; 125:5745-5752. [PMID: 34181858 PMCID: PMC8279644 DOI: 10.1021/acs.jpca.1c03433] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 06/14/2021] [Indexed: 11/29/2022]
Abstract
We report the results of inelastic differential scattering experiments and full-dimensional molecular dynamics trajectory simulations for 2.76 eV H atoms colliding at a surface of solid xenon. The interaction potential is based on an effective medium theory (EMT) fit to density functional theory (DFT) energies. The translational energy-loss distributions derived from experiment and theory are in excellent agreement. By analyzing trajectories, we find that only a minority of the scattering results from simple single-bounce dynamics. The majority comes from multibounce collisions including subsurface scattering where the H atoms penetrate below the first layer of Xe atoms and subsequently re-emerge to the gas phase. This behavior leads to observable energy-losses as large as 0.5 eV, much larger than a prediction of the binary collision model (0.082 eV), which is often used to estimate the highest possible energy-loss in direct inelastic surface scattering. The sticking probability computed with the EMT-PES (0.15) is dramatically reduced (5 × 10-6) if we employ a full-dimensional potential energy surface (PES) based on Lennard-Jones (LJ) pairwise interactions. Although the LJ-PES accurately describes the interactions near the H-Xe and Xe-Xe energy minima, it drastically overestimates the effective size of the Xe atom seen by the colliding H atom at incidence energies above about 0.1 eV.
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Affiliation(s)
- Nils Hertl
- Institut
für physikalische Chemie, Universität
Göttingen, Tammannstrasse
6, 37077 Göttingen, Germany
- Department
of Dynamics at Surfaces, Max-Planck Institute
for Biophysical Chemistry, am Faßberg 11, 37077 Göttingen, Germany
| | - Alexander Kandratsenka
- Department
of Dynamics at Surfaces, Max-Planck Institute
for Biophysical Chemistry, am Faßberg 11, 37077 Göttingen, Germany
| | - Oliver Bünermann
- Institut
für physikalische Chemie, Universität
Göttingen, Tammannstrasse
6, 37077 Göttingen, Germany
- Department
of Dynamics at Surfaces, Max-Planck Institute
for Biophysical Chemistry, am Faßberg 11, 37077 Göttingen, Germany
- International
Center for Advanced Studies of Energy Conversion, Georg-August University of Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
| | - Alec M. Wodtke
- Institut
für physikalische Chemie, Universität
Göttingen, Tammannstrasse
6, 37077 Göttingen, Germany
- Department
of Dynamics at Surfaces, Max-Planck Institute
for Biophysical Chemistry, am Faßberg 11, 37077 Göttingen, Germany
- International
Center for Advanced Studies of Energy Conversion, Georg-August University of Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
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36
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Auerbach DJ, Tully JC, Wodtke AM. Chemical dynamics from the gas‐phase to surfaces. ACTA ACUST UNITED AC 2021. [DOI: 10.1002/ntls.10005] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Daniel J. Auerbach
- Institut für physikalische Chemie Georg‐August Universität Göttingen Göttingen Germany
- Abteilung für Dynamik an Oberflächen Max‐Planck‐Institut für biophysikalische Chemie Göttingen Germany
| | - John C. Tully
- Department of Chemistry Yale University New Haven Connecticut USA
| | - Alec M. Wodtke
- Institut für physikalische Chemie Georg‐August Universität Göttingen Göttingen Germany
- Abteilung für Dynamik an Oberflächen Max‐Planck‐Institut für biophysikalische Chemie Göttingen Germany
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37
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Bünermann O, Kandratsenka A, Wodtke AM. Inelastic Scattering of H Atoms from Surfaces. J Phys Chem A 2021; 125:3059-3076. [PMID: 33779163 PMCID: PMC8154602 DOI: 10.1021/acs.jpca.1c00361] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Revised: 03/09/2021] [Indexed: 11/29/2022]
Abstract
We have developed an instrument that uses photolysis of hydrogen halides to produce nearly monoenergetic hydrogen atom beams and Rydberg atom tagging to obtain accurate angle-resolved time-of-flight distributions of atoms scattered from surfaces. The surfaces are prepared under strict ultrahigh vacuum conditions. Data from these experiments can provide excellent benchmarks for theory, from which it is possible to obtain an atomic scale understanding of the underlying dynamical processes governing H atom adsorption. In this way, the mechanism of adsorption on metals is revealed, showing a penetration-resurfacing mechanism that relies on electronic excitation of the metal by the H atom to succeed. Contrasting this, when H atoms collide at graphene surfaces, the dynamics of bond formation involving at least four carbon atoms govern adsorption. Future perspectives of H atom scattering from surfaces are also outlined.
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Affiliation(s)
- Oliver Bünermann
- Institute
for Physical Chemistry, Georg-August-University
of Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
- Department
of Dynamics at Surfaces, Max-Planck Institute
for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
- International
Center for Advanced Studies of Energy Conversion, Georg-August University of Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
| | - Alexander Kandratsenka
- Department
of Dynamics at Surfaces, Max-Planck Institute
for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
| | - Alec M. Wodtke
- Institute
for Physical Chemistry, Georg-August-University
of Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
- Department
of Dynamics at Surfaces, Max-Planck Institute
for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
- International
Center for Advanced Studies of Energy Conversion, Georg-August University of Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
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38
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Kroes GJ. Computational approaches to dissociative chemisorption on metals: towards chemical accuracy. Phys Chem Chem Phys 2021; 23:8962-9048. [PMID: 33885053 DOI: 10.1039/d1cp00044f] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We review the state-of-the-art in the theory of dissociative chemisorption (DC) of small gas phase molecules on metal surfaces, which is important to modeling heterogeneous catalysis for practical reasons, and for achieving an understanding of the wealth of experimental information that exists for this topic, for fundamental reasons. We first give a quick overview of the experimental state of the field. Turning to the theory, we address the challenge that barrier heights (Eb, which are not observables) for DC on metals cannot yet be calculated with chemical accuracy, although embedded correlated wave function theory and diffusion Monte-Carlo are moving in this direction. For benchmarking, at present chemically accurate Eb can only be derived from dynamics calculations based on a semi-empirically derived density functional (DF), by computing a sticking curve and demonstrating that it is shifted from the curve measured in a supersonic beam experiment by no more than 1 kcal mol-1. The approach capable of delivering this accuracy is called the specific reaction parameter (SRP) approach to density functional theory (DFT). SRP-DFT relies on DFT and on dynamics calculations, which are most efficiently performed if a potential energy surface (PES) is available. We therefore present a brief review of the DFs that now exist, also considering their performance on databases for Eb for gas phase reactions and DC on metals, and for adsorption to metals. We also consider expressions for SRP-DFs and briefly discuss other electronic structure methods that have addressed the interaction of molecules with metal surfaces. An overview is presented of dynamical models, which make a distinction as to whether or not, and which dissipative channels are modeled, the dissipative channels being surface phonons and electronically non-adiabatic channels such as electron-hole pair excitation. We also discuss the dynamical methods that have been used, such as the quasi-classical trajectory method and quantum dynamical methods like the time-dependent wave packet method and the reaction path Hamiltonian method. Limits on the accuracy of these methods are discussed for DC of diatomic and polyatomic molecules on metal surfaces, paying particular attention to reduced dimensionality approximations that still have to be invoked in wave packet calculations on polyatomic molecules like CH4. We also address the accuracy of fitting methods, such as recent machine learning methods (like neural network methods) and the corrugation reducing procedure. In discussing the calculation of observables we emphasize the importance of modeling the properties of the supersonic beams in simulating the sticking probability curves measured in the associated experiments. We show that chemically accurate barrier heights have now been extracted for DC in 11 molecule-metal surface systems, some of which form the most accurate core of the only existing database of Eb for DC reactions on metal surfaces (SBH10). The SRP-DFs (or candidate SRP-DFs) that have been derived show transferability in many cases, i.e., they have been shown also to yield chemically accurate Eb for chemically related systems. This can in principle be exploited in simulating rates of catalyzed reactions on nano-particles containing facets and edges, as SRP-DFs may be transferable among systems in which a molecule dissociates on low index and stepped surfaces of the same metal. In many instances SRP-DFs have allowed important conclusions regarding the mechanisms underlying observed experimental trends. An important recent observation is that SRP-DFT based on semi-local exchange DFs has so far only been successful for systems for which the difference of the metal work function and the molecule's electron affinity exceeds 7 eV. A main challenge to SRP-DFT is to extend its applicability to the other systems, which involve a range of important DC reactions of e.g. O2, H2O, NH3, CO2, and CH3OH. Recent calculations employing a PES based on a screened hybrid exchange functional suggest that the road to success may be based on using exchange functionals of this category.
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Affiliation(s)
- Geert-Jan Kroes
- Leiden Institute of Chemistry, Gorlaeus Laboratories, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands.
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39
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Tamtögl A, Ruckhofer A, Campi D, Allison W, Ernst WE. Atom-surface van der Waals potentials of topological insulators and semimetals from scattering measurements. Phys Chem Chem Phys 2021; 23:7637-7652. [PMID: 33492313 DOI: 10.1039/d0cp05388k] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The phenomenology of resonant scattering has been known since the earliest experiments upon scattering of atomic beams from surfaces and is a means of obtaining experimental information about the fundamentals of weak adsorption systems in the van der Waals regime. We provide an overview of the experimental approach based on new experimental data for the He-Sb2Te3(111) system, followed by a comparative overview and perspective of recent results for topological semimetal and insulator surfaces. Moreover, we shortly discuss the perspectives of calculating helium-surface interaction potentials from ab initio calculations. Our perspective demonstrates that atom-surface scattering provides direct experimental information about the atom-surface interaction in the weak physisorption regime and can also be used to determine the lifetime and mean free path of the trapped atom. We further discuss the effects of elastic and inelastic scattering on the linewidth and lifetime of the trapped He atom with an outlook on future developments and applications.
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Affiliation(s)
- Anton Tamtögl
- Institute of Experimental Physics, Graz University of Technology, 8010 Graz, Austria.
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40
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Jiang H, Tao X, Kammler M, Ding F, Wodtke AM, Kandratsenka A, Miller TF, Bünermann O. Small Nuclear Quantum Effects in Scattering of H and D from Graphene. J Phys Chem Lett 2021; 12:1991-1996. [PMID: 33596383 DOI: 10.1021/acs.jpclett.0c02933] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
We study nuclear quantum effects in H/D sticking to graphene, comparing scattering experiments at near-zero coverage with classical, quantized, and transition-state calculations. The experiment shows H/D sticking probabilities that are indistinguishable from one another and markedly smaller than those expected from a consideration of zero-point energy shifts of the chemisorption transition state. Inclusion of dynamical effects and vibrational anharmonicity via ring-polymer molecular dynamics (RPMD) yields results that are in good agreement with the experimental results. RPMD also reveals that nuclear quantum effects, while modest, arise primarily from carbon and not from H/D motion, confirming the importance of a C atom rehybridization mechanism associated with H/D sticking on graphene.
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Affiliation(s)
- Hongyan Jiang
- Department of Dynamics at Surfaces, Max-Planck-Institute for Biophysical Chemistry, Am Faßerg 11, 37077 Göttingen, Germany
| | - Xuecheng Tao
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Marvin Kammler
- Department of Dynamics at Surfaces, Max-Planck-Institute for Biophysical Chemistry, Am Faßerg 11, 37077 Göttingen, Germany
| | - Feizhi Ding
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Alec M Wodtke
- Department of Dynamics at Surfaces, Max-Planck-Institute for Biophysical Chemistry, Am Faßerg 11, 37077 Göttingen, Germany
- Institut für Physikalische Chemie, Georg-Georg-August-Universität Göttingen, Tammanstraße 6, 37077 Göttingen, Germany
- International Center for Advanced Studies of Energy Conversion, Georg-August University of Göttingen, Tammanstraße 6, 37077 Göttingen, Germany
| | - Alexander Kandratsenka
- Department of Dynamics at Surfaces, Max-Planck-Institute for Biophysical Chemistry, Am Faßerg 11, 37077 Göttingen, Germany
| | - Thomas F Miller
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Oliver Bünermann
- Department of Dynamics at Surfaces, Max-Planck-Institute for Biophysical Chemistry, Am Faßerg 11, 37077 Göttingen, Germany
- Institut für Physikalische Chemie, Georg-Georg-August-Universität Göttingen, Tammanstraße 6, 37077 Göttingen, Germany
- International Center for Advanced Studies of Energy Conversion, Georg-August University of Göttingen, Tammanstraße 6, 37077 Göttingen, Germany
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41
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Nieman R, Aquino AJA, Lischka H. Exploration of Graphene Defect Reactivity toward a Hydrogen Radical Utilizing a Preactivated Circumcoronene Model. J Phys Chem A 2021; 125:1152-1165. [PMID: 33507752 DOI: 10.1021/acs.jpca.0c09255] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
A preexisting chemisorbed defect is well-known to increase the reactivity of graphene which is normally chemically inert. Specifically, the presence of chemisorbed hydrogen atoms forming an sp3-hybridized C-H bond is known to increase the reactivity of neighboring carbon atoms toward additional hydrogenation with wide-ranging applications from materials science to astrochemistry. In this work, static DFT and DFT-based direct dynamics simulations are used to characterize the reactivity of a graphene sheet around an existing C-H bond defect. The spin density landscape shows how to guide subsequent H atom additions, always bonding most strongly to the carbon atom with greatest spin density. Molecular dynamics of an impinging H atom under thermal conditions with defect graphene was used to determine the statistics of probable reactions. The most frequent outcome is inelastic scattering (48%) and then Eley-Rideal (ER) abstraction of the chemisorbed H atom as vibrationally hot H2 (40%), while the least likely, but probably most interesting, result is formation of a novel C-H bond (12%). The C-H bonds always form in the β sublattice. The carbon atom in the para position shows to be most reactive toward the incoming H atom, followed by the ortho carbon, in agreement with the spin density computed in the static calculations. Globally, the graphene energy surface is repulsive, but the defects create local channels into this energy surface through which reactants can move locally through and react with the activated surface without a barrier.
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Affiliation(s)
- Reed Nieman
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409-1061, United States.,Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Adelia J A Aquino
- Department of Mechanical Engineering, Texas Tech University, Lubbock, Texas 79409, United States.,School of Pharmaceutical Sciences and Technology, Tianjin University, Tianjin 300072, P. R. China
| | - Hans Lischka
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409-1061, United States.,School of Pharmaceutical Sciences and Technology, Tianjin University, Tianjin 300072, P. R. China
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42
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Chu Q, Shi B, Wang H, Chen D, Liao L. Hydrogen abstraction/addition reactions in soot surface growth. Phys Chem Chem Phys 2021; 23:3071-3086. [PMID: 33491705 DOI: 10.1039/d0cp06406h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The hydrogen abstraction (HB) and addition reactions (HD) by H radicals are examined on a series of polycyclic aromatic hydrocarbon (PAH) monomers and models of quasi-surfaces using quasi-classical trajectory (QCT) method. QCT results reproduce the rate constants of HB reactions on PAH monomers from density functional theory (DFT) in the range of 1500-2700 K. The PAH size has a minor impact on the rates of HB reactions, especially at temperatures beyond 2100 K. In contrast, HD reactions have a clear size dependence, and a larger PAH yields a higher rate. It was also found that the preferred reaction pathway changes from HB to HD reactions at ∼1900 K. The rates of surface HB and HD reactions exceed those in the gas phase by nearly one factor of magnitude. Further analysis of the detailed trajectory of the QCT method reveals that about 50% of surface reactions can be attributed to the events of surface diffusion, which depends on the local energy transfer in gas-surface interactions. However, this phenomenon is not preferred in PAH monomers, as expected. Our finding here questions the treatment of the surface reactions of soot as the product of the first collision between the gaseous species and particle surface. The surface diffusion-induced reactions should be accounted for in the rates of the surface HB and HD reactions. The rate constants of HB and HD reactions on each reactive site (surface zig-zag, surface free-edge and pocket free-edge sites) were calculated by QCT method, and are recommended for the further development of surface chemistry models in soot formation.
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Affiliation(s)
- Qingzhao Chu
- State Key Lab of Explosion Science and Technology, Beijing Institute of Technology, Beijing, 100081, China. and School of Aerospace Engineering, Beijing Institute of Technology, Beijing, 100081, China
| | - Baolu Shi
- School of Aerospace Engineering, Beijing Institute of Technology, Beijing, 100081, China
| | - Hongyu Wang
- State Key Lab of Explosion Science and Technology, Beijing Institute of Technology, Beijing, 100081, China.
| | - Dongping Chen
- State Key Lab of Explosion Science and Technology, Beijing Institute of Technology, Beijing, 100081, China.
| | - Lijuan Liao
- Key Laboratory for Mechanics in Fluid Solid Coupling Systems, Institute of Mechanics, Chinese Academy of Sciences, Beijing, 100190, China.
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43
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Abdelnabi MMS, Blundo E, Betti MG, Cavoto G, Placidi E, Polimeni A, Ruocco A, Hu K, Ito Y, Mariani C. Towards free-standing graphane: atomic hydrogen and deuterium bonding to nano-porous graphene. NANOTECHNOLOGY 2021; 32:035707. [PMID: 33017812 DOI: 10.1088/1361-6528/abbe56] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Graphane is formed by bonding hydrogen (and deuterium) atoms to carbon atoms in the graphene mesh, with modification from the pure planar sp2 bonding towards an sp3 configuration. Atomic hydrogen (H) and deuterium (D) bonding with C atoms in fully free-standing nano porous graphene (NPG) is achieved, by exploiting low-energy proton (or deuteron) non-destructive irradiation, with unprecedented minimal introduction of defects, as determined by Raman spectroscopy and by the C 1s core level lineshape analysis. Evidence of the H- (or D-) NPG bond formation is obtained by bringing to light the emergence of a H- (or D-) related sp3-distorted component in the C 1s core level, clear fingerprint of H-C (or D-C) covalent bonding. The H (or D) bonding with the C atoms of free-standing graphene reaches more than 1/4 (or 1/3) at% coverage. This non-destructive H-NPG (or D-NPG) chemisorption is very stable at high temperatures up to about 800 K, as monitored by Raman and x-ray photoelectron spectroscopy, with complete healing and restoring of clean graphene above 920 K. The excellent chemical and temperature stability of H- (and D-) NPG opens the way not only towards the formation of semiconducting graphane on large-scale samples, but also to stable graphene functionalisation enabling futuristic applications in advanced detectors for the β-spectrum analysis.
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Affiliation(s)
| | - Elena Blundo
- Dipartimento di Fisica, Sapienza Università di Roma, P.le Aldo Moro 2, 00185 Rome, Italy
| | - Maria Grazia Betti
- Dipartimento di Fisica and INFN Sezione di Roma 1, Sapienza Università di Roma, P.le Aldo Moro 2, 00185 Rome, Italy
| | - Gianluca Cavoto
- Dipartimento di Fisica and INFN Sezione di Roma 1, Sapienza Università di Roma, P.le Aldo Moro 2, 00185 Rome, Italy
| | - Ernesto Placidi
- Dipartimento di Fisica, Sapienza Università di Roma, P.le Aldo Moro 2, 00185 Rome, Italy
| | - Antonio Polimeni
- Dipartimento di Fisica, Sapienza Università di Roma, P.le Aldo Moro 2, 00185 Rome, Italy
| | - Alessandro Ruocco
- Dipartimento di Scienze and INFN Sezione di Roma 3, Università di Roma Tre, Via della Vasca Navale, 00146 Rome, Italy
| | - Kailong Hu
- Institute of Applied Physics, Graduate School of Pure and Applied Sciences, University of Tsukuba, Tsukuba 305-8573, Japan
| | - Yoshikazu Ito
- Institute of Applied Physics, Graduate School of Pure and Applied Sciences, University of Tsukuba, Tsukuba 305-8573, Japan
| | - Carlo Mariani
- Dipartimento di Fisica and INFN Sezione di Roma 1, Sapienza Università di Roma, P.le Aldo Moro 2, 00185 Rome, Italy
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44
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Borodin D, Rahinov I, Shirhatti PR, Huang M, Kandratsenka A, Auerbach DJ, Zhong T, Guo H, Schwarzer D, Kitsopoulos TN, Wodtke AM. Following the microscopic pathway to adsorption through chemisorption and physisorption wells. Science 2020; 369:1461-1465. [DOI: 10.1126/science.abc9581] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Accepted: 07/14/2020] [Indexed: 11/02/2022]
Abstract
Adsorption involves molecules colliding at the surface of a solid and losing their incidence energy by traversing a dynamical pathway to equilibrium. The interactions responsible for energy loss generally include both chemical bond formation (chemisorption) and nonbonding interactions (physisorption). In this work, we present experiments that revealed a quantitative energy landscape and the microscopic pathways underlying a molecule’s equilibration with a surface in a prototypical system: CO adsorption on Au(111). Although the minimum energy state was physisorbed, initial capture of the gas-phase molecule, dosed with an energetic molecular beam, was into a metastable chemisorption state. Subsequent thermal decay of the chemisorbed state led molecules to the physisorption minimum. We found, through detailed balance, that thermal adsorption into both binding states was important at all temperatures.
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Affiliation(s)
- Dmitriy Borodin
- Institute for Physical Chemistry, Georg-August University of Göttingen, Tammannstraße 6, 37077 Göttingen, Germany
- Department of Dynamics at Surfaces, Max Planck Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
| | - Igor Rahinov
- Department of Natural Sciences, The Open University of Israel, 4353701 Raanana, Israel
| | | | - Meng Huang
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, NM 87131, USA
| | - Alexander Kandratsenka
- Department of Dynamics at Surfaces, Max Planck Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
| | - Daniel J. Auerbach
- Department of Dynamics at Surfaces, Max Planck Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
| | - Tianli Zhong
- Institute for Physical Chemistry, Georg-August University of Göttingen, Tammannstraße 6, 37077 Göttingen, Germany
- Department of Dynamics at Surfaces, Max Planck Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, NM 87131, USA
| | - Dirk Schwarzer
- Department of Dynamics at Surfaces, Max Planck Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
| | - Theofanis N. Kitsopoulos
- Institute for Physical Chemistry, Georg-August University of Göttingen, Tammannstraße 6, 37077 Göttingen, Germany
- Department of Dynamics at Surfaces, Max Planck Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
- Department of Chemistry, University of Crete, 71003 Heraklion, Greece
- Institute of Electronic Structure and Laser, FORTH, 71110 Heraklion, Greece
| | - Alec M. Wodtke
- Institute for Physical Chemistry, Georg-August University of Göttingen, Tammannstraße 6, 37077 Göttingen, Germany
- Department of Dynamics at Surfaces, Max Planck Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
- International Center for Advanced Studies of Energy Conversion, Georg-August University of Göttingen, Tammannstraße 6, 37077 Göttingen, Germany
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46
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Sun J, Feng S, Wang X, Zhang G, Luo Y, Jiang J. Regulation of Electronic Structure of Graphene Nanoribbon by Tuning Long-Range Dopant-Dopant Coupling at Distance of Tens of Nanometers. J Phys Chem Lett 2020; 11:6907-6913. [PMID: 32787204 DOI: 10.1021/acs.jpclett.0c01839] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Long-range dopant-dopant coupling in graphene nanoribbon (GNR) has been under intensive study for a very long time. Using a newly developed dopant central insertion scheme (DCIS), we performed first-principles study on multiple H, O, OH, and FeN4 dopants in long (up to 1000 nm) GNRs and found that, although potential energy of the dopant decays exponentially as a function of distance to the dopant, GNR's electronic density of states (DOS) exhibits wave-like oscillation modulated by dopants separated at a distance up to 100 nm. Such an oscillation strongly infers the purely quantum mechanical resonance states constrained between double quantum wells. This has been unambiguously confirmed by our DCIS study together with a one-dimensional quantum well model study, leading to a proof-of-principle protocol prescribing on-demand GNR-DOS regulation. All these not only reveal the underlining mechanism and importance of long-range dopant-dopant coupling specifically reported in GNR, but also open a novel highway for rationally optimizing and designing two-dimensional materials.
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Affiliation(s)
- Jiace Sun
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Shuo Feng
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Xijun Wang
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Guozhen Zhang
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Yi Luo
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Jun Jiang
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
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47
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Chen LD, Lawniczak JJ, Ding F, Bygrave PJ, Riahi S, Manby FR, Mukhopadhyay S, Miller TF. Embedded Mean-Field Theory for Solution-Phase Transition-Metal Polyolefin Catalysis. J Chem Theory Comput 2020; 16:4226-4237. [PMID: 32441933 DOI: 10.1021/acs.jctc.0c00169] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Decreasing the wall-clock time of quantum mechanics/molecular mechanics (QM/MM) calculations without sacrificing accuracy is a crucial prerequisite for widespread simulation of solution-phase dynamical processes. In this work, we demonstrate the use of embedded mean-field theory (EMFT) as the QM engine in QM/MM molecular dynamics (MD) simulations to examine polyolefin catalysts in solution. We show that employing EMFT in this mode preserves the accuracy of hybrid-functional DFT in the QM region, while providing up to 20-fold reductions in the cost per SCF cycle, thereby increasing the accessible simulation time-scales. We find that EMFT reproduces DFT-computed binding energies and optimized bond lengths to within chemical accuracy, as well as consistently ranking conformer stability. Furthermore, solution-phase EMFT/MM simulations provide insight into the interaction strength of strongly coordinating and bulky counterions.
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Affiliation(s)
- Leanne D Chen
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - James J Lawniczak
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Feizhi Ding
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Peter J Bygrave
- Centre for Computational Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
| | - Saleh Riahi
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Frederick R Manby
- Centre for Computational Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
| | | | - Thomas F Miller
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
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48
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Tao X, Shushkov P, Miller TF. Microcanonical rates from ring-polymer molecular dynamics: Direct-shooting, stationary-phase, and maximum-entropy approaches. J Chem Phys 2020; 152:124117. [DOI: 10.1063/1.5144307] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Affiliation(s)
- Xuecheng Tao
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Philip Shushkov
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Thomas F. Miller
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
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He N, Evangelista FA. A zeroth-order active-space frozen-orbital embedding scheme for multireference calculations. J Chem Phys 2020; 152:094107. [PMID: 33480706 DOI: 10.1063/1.5142481] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
Multireference computations of large-scale chemical systems are typically limited by the computational cost of quantum chemistry methods. In this work, we develop a zeroth-order active space embedding theory [ASET(0)], a simple and automatic approach for embedding any multireference dynamical correlation method based on a frozen-orbital treatment of the environment. ASET(0) is combined with the second-order multireference driven similarity renormalization group and tested on several benchmark problems, including the excitation energy of 1-octene and bond-breaking in ethane and pentyldiazene. Finally, we apply ASET(0) to study the singlet-triplet gap of p-benzyne and 9,10-anthracyne diradicals adsorbed on a NaCl surface. Our results show that despite its simplicity, ASET(0) is a powerful and sufficiently accurate embedding scheme applicable when the coupling between the fragment and the environment is in the weak to medium regime.
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Affiliation(s)
- Nan He
- Department of Chemistry, Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
| | - Francesco A Evangelista
- Department of Chemistry, Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
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Wille S, Jiang H, Bünermann O, Wodtke AM, Behler J, Kandratsenka A. An experimentally validated neural-network potential energy surface for H-atom on free-standing graphene in full dimensionality. Phys Chem Chem Phys 2020; 22:26113-26120. [PMID: 32915176 DOI: 10.1039/d0cp03462b] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a first principles-quality potential energy surface (PES) describing the inter-atomic forces for hydrogen atoms interacting with free-standing graphene. The PES is a high-dimensional neural network potential that has been parameterized to 75 945 data points computed with density-functional theory employing the PBE-D2 functional. Improving over a previously published PES [Jiang et al., Science, 2019, 364, 379], this neural network exhibits a realistic physisorption well and achieves a 10-fold reduction in the RMS fitting error, which is 0.6 meV per atom. The chemisorption barrier is 172 meV, which is lower than that of the REBO-EMFT PES (260 meV). We used this PES to calculate about 1.5 million classical trajectories with carefully selected initial conditions to allow for direct comparison to results of H- and D-atom scattering experiments performed at incidence translational energy of 1.9 eV and a surface temperature of 300 K. The theoretically predicted scattering angular and energy loss distributions are in good agreement with experiment, despite the fact that the experiments employed graphene grown on Pt(111). Compared to previous calculations, the agreement with experiments is improved. The remaining discrepancies between experiment and theory are likely due to the influence of the Pt substrate only present in the experiment.
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Affiliation(s)
- Sebastian Wille
- Department of Dynamics at Surfaces, Max-Planck-Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany.
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