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Liu W, Li E, Liu L, Tian F, Luo X, Cai Y, Wang J, Jin X. Antifungal activity of compounds from Gordonia sp. WA8-44 isolated from the gut of Periplaneta americana and molecular docking studies. Heliyon 2023; 9:e17777. [PMID: 37539250 PMCID: PMC10395128 DOI: 10.1016/j.heliyon.2023.e17777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 06/13/2023] [Accepted: 06/28/2023] [Indexed: 08/05/2023] Open
Abstract
Invasive fungal infections are on the rise, leading to a continuous demand for antifungal antibiotics. Rare actinomycetes have been shown to contain a variety of interesting compounds worth exploring. In this study, 15 strains of rare actinobacterium Gordonia were isolated from the gut of Periplaneta americana and screened for their anti-fungal activity against four human pathogenic fungi. Strain WA8-44 was found to exhibit significant anti-fungal activity and was selected for bioactive compound production, separation, purification, and characterization. Three anti-fungal compounds, Collismycin A, Actinomycin D, and Actinomycin X2, were isolated from the fermentation broth of Gordonia strain WA8-44. Of these, Collismycin A was isolated and purified from the secondary metabolites of Gordonia for the first time, and its anti-filamentous fungi activity was firstly identified in this study. Molecular docking was carried out to determine their hypothetical binding affinities against nine target proteins of Candida albicans. Chitin Synthase 2 was found to be the most preferred antimicrobial protein target for Collismycin A, while 1,3-Beta-Glucanase was the most preferred anti-fungal protein target for Actinomycin D and Actinomycin X2. ADMET prediction revealed that Collismycin A has favorable oral bioavailability and little toxicity, making it a potential candidate for development as an orally active medication.
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Affiliation(s)
- Wenbin Liu
- Guangdong Provincial Key Laboratory of Pharmaceutical Bioactive Substances, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
- School of Basic Medical Sciences, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
| | - Ertong Li
- Guangdong Provincial Key Laboratory of Pharmaceutical Bioactive Substances, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
- School of Basic Medical Sciences, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
| | - Lingyan Liu
- School of Pharmacy, Xi'an Medical College, Xi'an 710300, PR China
| | - Fangyuan Tian
- Guangdong Provincial Key Laboratory of Pharmaceutical Bioactive Substances, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
- School of Basic Medical Sciences, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
| | - Xiongming Luo
- Guangdong Provincial Key Laboratory of Pharmaceutical Bioactive Substances, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
- School of Basic Medical Sciences, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
| | - Yanqu Cai
- Guangdong Provincial Key Laboratory of Pharmaceutical Bioactive Substances, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
- School of Basic Medical Sciences, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
| | - Jie Wang
- Guangdong Provincial Key Laboratory of Pharmaceutical Bioactive Substances, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
- School of Basic Medical Sciences, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
| | - Xiaobao Jin
- Guangdong Provincial Key Laboratory of Pharmaceutical Bioactive Substances, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
- School of Basic Medical Sciences, Guangdong Pharmaceutical University, Guangzhou 510006, PR China
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Wei Z, Xu C, Wang J, Lu F, Bie X, Lu Z. Identification and characterization of Streptomyces flavogriseus NJ-4 as a novel producer of actinomycin D and holomycin. PeerJ 2017; 5:e3601. [PMID: 28740758 PMCID: PMC5520960 DOI: 10.7717/peerj.3601] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2017] [Accepted: 06/30/2017] [Indexed: 01/23/2023] Open
Abstract
This paper is the first public report that Streptomyces flavogriseus can produce both actinomycin D and holomycin. The actinomycete strain NJ-4 isolated from the soil of Nanjing Agricultural University was identified as S. flavogriseus. This S. flavogriseus strain was found for the first time to produce two antimicrobial compounds that were identified as actinomycin D and holomycin. GS medium, CS medium and GSS medium were used for the production experiments. All three media supported the production of actinomycin D, while holomycin was detected only in GS medium and was undetectable by HPLC in the CS and GSS media. The antimicrobial activity against B. pumilus, S. aureus, Escherichia coli, F. moniliforme, F. graminearum and A. niger was tested using the agar well diffusion method. Actinomycin D exhibited strong antagonistic activities against all the indicator strains. Holomycin exhibited strong antagonistic activities against B. pumilus, S. aureus and E. coli and had antifungal activity against F. moniliforme and F. graminearum but had no antifungal activity against A. niger. The cell viability was determined using an MTT assay. Holomycin exhibited cytotoxic activity against A549 lung cancer cells, BGC823 gastric cancer cells and HepG2 hepatocellular carcinoma cells. The yield of actinomycin D from S. flavogriseus NJ-4 was 960 mg/l. S. flavogriseus NJ-4 exhibits a distinct capability and has the industrial potential to produce considerable yields of actinomycin D under unoptimized conditions.
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Affiliation(s)
- Zhaohui Wei
- College of Food Science and Technology, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Chao Xu
- College of Food Science and Technology, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Juan Wang
- College of Food Science and Technology, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Fengxia Lu
- College of Food Science and Technology, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Xiaomei Bie
- College of Food Science and Technology, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Zhaoxin Lu
- College of Food Science and Technology, Nanjing Agricultural University, Nanjing, Jiangsu, China
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Toumatia O, Yekkour A, Goudjal Y, Riba A, Coppel Y, Mathieu F, Sabaou N, Zitouni A. Antifungal properties of an actinomycin D-producing strain,Streptomycessp. IA1, isolated from a Saharan soil. J Basic Microbiol 2014; 55:221-8. [DOI: 10.1002/jobm.201400202] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2014] [Accepted: 08/05/2014] [Indexed: 11/05/2022]
Affiliation(s)
- Omrane Toumatia
- Laboratoire de Biologie des Systèmes Microbiens (LBSM); Ecole Normale Supérieure de Kouba; Alger Algeria
- Faculté des Sciences, Département de Microbiologie et Biochimie; Université de M'sila; M'sila Algeria
| | - Amine Yekkour
- Laboratoire de Biologie des Systèmes Microbiens (LBSM); Ecole Normale Supérieure de Kouba; Alger Algeria
| | - Yacine Goudjal
- Laboratoire de Biologie des Systèmes Microbiens (LBSM); Ecole Normale Supérieure de Kouba; Alger Algeria
| | - Amar Riba
- Laboratoire de Biologie des Systèmes Microbiens (LBSM); Ecole Normale Supérieure de Kouba; Alger Algeria
| | - Yannick Coppel
- Centre National de la Recherche Scientifique (CNRS); Laboratoire de Chimie de Coordination (LCC); Toulouse France
- Université de Toulouse, UPS, INPT, LCC; Toulouse France
| | - Florence Mathieu
- Université de Toulouse, Département de Bioprocédés et Systèmes Microbiens, Laboratoire de Génie Chimique (LGC) UMR 5503 (CNRS/INPT/UPS), ENSAT-INP de Toulouse; Castanet-Tolosan Cedex 1 France
| | - Nasserdine Sabaou
- Laboratoire de Biologie des Systèmes Microbiens (LBSM); Ecole Normale Supérieure de Kouba; Alger Algeria
| | - Abdelghani Zitouni
- Laboratoire de Biologie des Systèmes Microbiens (LBSM); Ecole Normale Supérieure de Kouba; Alger Algeria
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Songsumanus A, Tanasupawat S, Igarashi Y, Kudo T. Micromonospora maritima sp. nov., isolated from mangrove soil. Int J Syst Evol Microbiol 2012; 63:554-559. [PMID: 22523171 DOI: 10.1099/ijs.0.039180-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Strain D10-9-5(T) was isolated from mangrove soil in Samut Sakhon province, Thailand. A polyphasic approach was used to determine the taxonomic position of the strain. The strain presented single rough spores on substrate mycelium and no aerial mycelium. Chemotaxonomic data supported the assignment of strain D10-9-5(T) to the genus Micromonospora based on the presence of meso-diaminopimelic acid and glycolyl muramic acid in the peptidoglycan, ribose, mannose, galactose, xylose and glucose as whole-cell sugars, MK-10(H(4)) (14.8 %), MK-10(H(6)) (46.7 %) and MK-10(H(8)) (27.5 %) as the predominant isoprenoid quinones, iso-C(15 : 0) (17.9 %), anteiso-C(17 : 0) (14.6 %), iso-C(17 : 0) (9.6 %), C(17 : 0) (8.0 %), iso-C(16 : 0) (7.7 %) and C(17 : 1)ω8c (7.0 %) as the major cellular fatty acids, and diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannosides and phosphatidylethanolamine as the predominant phospholipids in the cell wall. The 16S rRNA gene sequence and phylogenetic analysis showed that strain D10-9-5 was closely related to Micromonospora marina JCM 12870(T) (99.6 %), Micromonospora coxensis JCM 13248 (T) (99.4 %), Micromonospora aurantiaca JCM 10878(T) (99.3 %), Micromonospora humi JCM15292(T) (99.3 %), Micromonospora halophytica JCM 3125(T) (99.1%) and Micromonospora chalcea JCM 3031(T) (99.1 %). Strain D10-9-5(T) could be clearly distinguished from related members of the genus Micromonospora by its physiological and biochemical characteristics as well as its phylogenetic position and level of DNA-DNA relatedness. Therefore, the strain represents a novel species for which the name Micromonospora maritima sp. nov. is proposed; the type strain is D10-9-5(T) ( = JCM 17013(T) = NBRC 108767(T) = PCU 322(T) = TISTR 2000(T)).
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Affiliation(s)
- Apakorn Songsumanus
- Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand
| | - Somboon Tanasupawat
- Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand
| | - Yasuhiro Igarashi
- Biotechnology Research Center, Toyama Prefectural University, 5180 Kurokawa, Kosugi, Toyama 939 0398, Japan
| | - Takuji Kudo
- Japan Collection of Microorganisms, RIKEN BioResource Center, Wako, Saitama 351-0198, Japan
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Praveen V, Tripathi C. Studies on the production of actinomycin-D byStreptomyces griseoruber- a novel source. Lett Appl Microbiol 2009; 49:450-5. [DOI: 10.1111/j.1472-765x.2009.02689.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Praveen V, Tripathi CKM, Bihari V, Srivastava SC. Production of actinomycin-D by a new isolate,Streptomyces sindenensis. ANN MICROBIOL 2008. [DOI: 10.1007/bf03179453] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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Horan AC. Aerobic actinomycetes: a continuing source of novel natural products. BIOTECHNOLOGY (READING, MASS.) 1994; 26:3-30. [PMID: 7749308 DOI: 10.1016/b978-0-7506-9003-4.50007-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- A C Horan
- Schering-Plough Research Institute, Kenilworth, New Jersey, USA
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