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Otto SJ, Teichmann L, Fante N, Crauwels P, Grünberger A, Neddermann T, Riedel CU. High-throughput detection of potential bacteriocin producers in a large strain library using live fluorescent biosensors. Front Bioeng Biotechnol 2024; 12:1405202. [PMID: 39144483 PMCID: PMC11321961 DOI: 10.3389/fbioe.2024.1405202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Accepted: 07/03/2024] [Indexed: 08/16/2024] Open
Abstract
The global increase in antibiotic resistances demands for additional efforts to identify novel antimicrobials such as bacteriocins. These antimicrobial peptides of bacterial origin are already used widely in food preservation and promising alternatives for antibiotics in animal feed and some clinical setting. Identification of novel antimicrobials is facilitated by appropriate high throughput screening (HTS) methods. Previously, we have described a rapid, simple and cost-efficient assay based on live biosensor bacteria for detection of antimicrobial compounds that act on membrane integrity using the ratiometric pH-dependent fluorescent protein pHluorin2 (pHin2). Here, we use these biosensors to develop an integrated pipeline for high-throughput identification of bacteriocin producers and their biosynthetic gene clusters. We extend the existing portfolio of biosensors by generating pHin2 expressing strains of Escherichia coli, Bacillus cereus, Staphylococcus epidermidis, and methicillin-resistant Staphylococcus aureus. These strains were characterized, and control experiments were performed to assess heterogeneity of these biosensors in response to known bacteriocins and develop a robust HTS system. To allow detection of compounds that inhibit target bacteria by inhibiting growth without disturbing membrane integrity, the HTS system was extended with a growth-dependent readout. Using this HTS system, we screened supernatants of a total of 395 strains of a collection of lactic acid bacteria. After two rounds of screening 19 strains of the collection were identified that produced antimicrobial activity against Listeria innocua and Listeria monocytogenes. Genomes of confirmed hits were sequenced and annotated. In silico analysis revealed that the identified strains encode between one and six biosynthetic gene clusters (BGCs) for bacteriocins. Our results suggest that pHin2 biosensors provides a flexible, cheap, fast, robust and easy to handle HTS system for identification of potential bacteriocins and their BGCs in large strain collections.
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Affiliation(s)
| | | | - Niklas Fante
- Multiscale Bioengineering, Technical Faculty, Bielefeld University, Bielefeld, Germany
| | | | - Alexander Grünberger
- Multiscale Bioengineering, Technical Faculty, Bielefeld University, Bielefeld, Germany
- Microsystems in Bioprocess Engineering, Institute of Process Engineering in Life Sciences, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
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Ames CW, Cunha KFD, Vitola HRS, Hackbart HCDS, Sanches Filho PJ, Cruxen CEDS, da Silva WP, Fiorentini ÂM. Evaluation of potentially probiotic
Lactobacillus casei
CSL3 immobilized on oats and applied to yogurt production. J FOOD PROCESS PRES 2021. [DOI: 10.1111/jfpp.15803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Camila Waschburger Ames
- Department of Agroindustrial Science and Technology Federal University of Pelotas (UFPel) Pelotas Brazil
| | - Kamila Furtado da Cunha
- Department of Agroindustrial Science and Technology Federal University of Pelotas (UFPel) Pelotas Brazil
| | | | | | | | | | - Wladimir Padilha da Silva
- Department of Agroindustrial Science and Technology Federal University of Pelotas (UFPel) Pelotas Brazil
- Biotechnology Unit Technology Development Center Federal University of Pelotas (UFPel) Pelotas Brazil
| | - Ângela Maria Fiorentini
- Department of Agroindustrial Science and Technology Federal University of Pelotas (UFPel) Pelotas Brazil
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Teke GM, Pott RWM. Design and evaluation of a continuous semipartition bioreactor for in situ liquid-liquid extractive fermentation. Biotechnol Bioeng 2020; 118:58-71. [PMID: 32876954 DOI: 10.1002/bit.27550] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2020] [Revised: 08/04/2020] [Accepted: 08/29/2020] [Indexed: 11/09/2022]
Abstract
Extractive fermentation (or in situ product removal (ISPR)) is an operational method used to combat product inhibition in fermentations. To achieve ISPR, different separation techniques, modes of operation and physical reactor configurations have been proposed. However, the relative paucity of industrial application necessitates continued investigation into reactor systems. This article outlines a bioreactor designed to facilitate in situ product extraction and recovery, through adapting the reaction volume to include a settler and solvent extraction and recycle section. This semipartition bioreactor is proposed as a new mode of operation for continuous liquid-liquid extractive fermentation. The design is demonstrated as a modified bench-top fermentation vessel, initially analysed in terms of fluid dynamic studies, in a model two-liquid phase system. A continuous abiotic simulation of lactic acid (LA) fermentation is then demonstrated. The results show that mixing in the main reaction vessel is unaffected by the inserted settling zone, and that the size of the settling tube effects the maximum volumetric removal rate. In these tests the largest settling tube gave a potential continuous volumetric removal rate of 7.63 ml/min; sufficiently large to allow for continuous product extraction even in a highly productive fermentation. To demonstrate the applicability of the developed reactor, an abiotic simulation of a LA fermentation was performed. LA was added to reactor continuously at a rate of 33ml/h, while continuous in situ extraction removed the LA using 15% trioctylamine in oleyl alcohol. The reactor showed stable LA concentration of 1 g/L, with the balance of the LA successfully extracted and recovered using back extraction. This study demonstrates a potentially useful physical configuration for continuous in situ extraction.
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Affiliation(s)
- George M Teke
- Department of Process Engineering, University of Stellenbosch, Stellenbosch, South Africa
| | - Robert W M Pott
- Department of Process Engineering, University of Stellenbosch, Stellenbosch, South Africa
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Mohsina K, Ratkowsky DA, Bowman JP, Powell S, Kaur M, Tamplin ML. Effect of glucose, pH and lactic acid on Carnobacterium maltaromaticum, Brochothrix thermosphacta and Serratia liquefaciens within a commercial heat-shrunk vacuum-package film. Food Microbiol 2020; 91:103515. [PMID: 32539954 DOI: 10.1016/j.fm.2020.103515] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 03/26/2020] [Accepted: 04/15/2020] [Indexed: 10/24/2022]
Abstract
Carnobacterium maltaromaticum, Brochothrix thermosphacta and Serratia liquefaciens are common spoilage organisms found within the microbiome of refrigerated vacuum-packaged (VP) beef. Extending and predicting VP beef shelf-life requires knowledge about how spoilage bacteria growth is influenced by environmental extrinsic and intrinsic factors. Multifactorial effects of pH, lactic acid (LA) and glucose on growth kinetics were quantified for C. maltaromaticum, B. thermosphacta and S. liquefaciens within a heat shrink-wrapped VP commercial film containing a simulated beef medium. LA, pH, and undissociated lactic acid (UDLA) significantly affected bacterial growth rate (p < 0.001), whereas 5.55 mM glucose produced a marginal effect. At 1.12 mM UDLA, growth rate and maximum population density decreased 20.9 and 3.5%, 56 and 7%, and 11 and 2% for C. maltaromaticum, B. thermosphacta, and S. liquefaciens, respectively.
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Affiliation(s)
| | | | | | - Shane Powell
- University of Tasmania, Hobart, Tasmania, Australia
| | - Mandeep Kaur
- University of Tasmania, Hobart, Tasmania, Australia
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Elahi S, Fujikawa H. Effects of Lactic Acid and Salt on Enterotoxin A Production and Growth of Staphylococcus aureus. J Food Sci 2019; 84:3233-3240. [PMID: 31618461 DOI: 10.1111/1750-3841.14829] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 09/02/2019] [Accepted: 09/04/2019] [Indexed: 11/28/2022]
Abstract
Food poisoning caused by Staphylococcus aureus is responsible for staphylococcal enterotoxin (SE) produced in foods. Staphylococcal food poisoning is mostly caused by staphylococcal enterotoxin type A (SEA) among SEs. Growth/no growth for S. aureus under various environmental conditions was well studied with a logistic regression model so far. Recently we successfully described the boundaries of SEA production and growth of S. aureus in broth at various temperatures and salt concentrations with the model. In this study, the effects of lactic acid and salt on SEA production and growth of S. aureus was quantitatively studied. Consequently the boundaries of SEA production and growth of S. aureus cocktail in broth at various combinations of salt concentrations and pH values that were adjusted with lactic acid were successfully described with a logistic regression model. Here the cocktail was incubated in stationary culture at 30 °C and 10 °C. The maximum toxin production and cell growth of the cocktail were observed both at 5% salt in the pH range from 4.5 to 7.0. Also, the characteristics of individual strains of the cocktail in SEA production and growth at 30 °C and 10 °C were found to be specific to the strains. The present study revealed the effect of lactic acid and salt on SEA production and growth of S. aureus as well as the variety of SEA production and growth of S. aureus strains. These results would become useful information in food industry to prevent staphylococcal food poisoning. PRACTICAL APPLICATION: Boundaries of enterotoxin A production/no production and growth/no growth of staphylococcal cocktail at various combinations of pHs adjusted with lactic acid and salt concentrations were well described with a logistic regression model. The maximum toxin production and cell growth were observed both at 5% salt in the pH range from 4.5 to 7.0. A variety of the toxin production and cell growth were observed in terms of pH and salt concentration among individual strains of the cocktail.
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Affiliation(s)
- Shaheem Elahi
- The United Graduate School of Veterinary Sciences, Gifu Univ., Yanagido, Japan
| | - Hiroshi Fujikawa
- Laboratory of Veterinary Public Health, Faculty of Agriculture, Tokyo Univ. of Agriculture and technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo, 183-8509, Japan
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Salomskiene J, Jonkuviene D, Macioniene I, Abraitiene A, Zeime J, Repeckiene J, Vaiciulyte-Funk L. Differences in the occurence and efficiency of antimicrobial compounds produced by lactic acid bacteria. Eur Food Res Technol 2019. [DOI: 10.1007/s00217-018-03227-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Polese P, Del Torre M, Stecchini ML. Prediction of the impact of processing critical conditions for Listeria monocytogenes growth in artisanal dry-fermented sausages (salami) through a growth/no growth model applicable to time-dependent conditions. Food Control 2017. [DOI: 10.1016/j.foodcont.2016.12.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Rodríguez MR, Aguirre JS, Lianou A, Parra-Flores J, García de Fernando GD. Analysis of the variability in microbial inactivation by acid treatments. Lebensm Wiss Technol 2016. [DOI: 10.1016/j.lwt.2015.10.056] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Valerio F, Lonigro SL, Biase MD, de Candia S, Callegari ML, Lavermicocca P. Bioprotection of Ready-to-eat Probiotic Artichokes Processed withLactobacillus paracaseiLMGP22043 against Foodborne Pathogens. J Food Sci 2013; 78:M1757-63. [DOI: 10.1111/1750-3841.12282] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2013] [Accepted: 08/09/2013] [Indexed: 11/28/2022]
Affiliation(s)
- Francesca Valerio
- Inst. of Sciences of Food Production (ISPA); Natl. Research Council (CNR)Via Amendola; 122/O 70126 Bari Italy
| | - Stella Lisa Lonigro
- Inst. of Sciences of Food Production (ISPA); Natl. Research Council (CNR)Via Amendola; 122/O 70126 Bari Italy
| | - Mariaelena Di Biase
- Inst. of Sciences of Food Production (ISPA); Natl. Research Council (CNR)Via Amendola; 122/O 70126 Bari Italy
| | - Silvia de Candia
- Inst. of Sciences of Food Production (ISPA); Natl. Research Council (CNR)Via Amendola; 122/O 70126 Bari Italy
| | - Maria Luisa Callegari
- Centro Ricerche Biotecnologiche-Istituto di Microbiologia; Univ. Cattolica del Sacro Cuore; Via Milano 24 26100 Cremona Italy
| | - Paola Lavermicocca
- Inst. of Sciences of Food Production (ISPA); Natl. Research Council (CNR)Via Amendola; 122/O 70126 Bari Italy
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Góngora HG, Ledesma P, Valvo VRL, Ruiz AE, Breccia JD. Screening of lactic acid bacteria for fermentation of minced wastes of Argentinean hake (Merluccius hubbsi). FOOD AND BIOPRODUCTS PROCESSING 2012. [DOI: 10.1016/j.fbp.2012.04.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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Modeling the effects of sodium chloride, acetic acid, and intracellular pH on survival of Escherichia coli O157:H7. Appl Environ Microbiol 2010; 77:889-95. [PMID: 21115706 DOI: 10.1128/aem.02136-10] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Microbiological safety has been a critical issue for acid and acidified foods since it became clear that acid-tolerant pathogens such as Escherichia coli O157:H7 can survive (even though they are unable to grow) in a pH range of 3 to 4, which is typical for these classes of food products. The primary antimicrobial compounds in these products are acetic acid and NaCl, which can alter the intracellular physiology of E. coli O157:H7, leading to cell death. For combinations of acetic acid and NaCl at pH 3.2 (a pH value typical for non-heat-processed acidified vegetables), survival curves were described by using a Weibull model. The data revealed a protective effect of NaCl concentration on cell survival for selected acetic acid concentrations. The intracellular pH of an E. coli O157:H7 strain exposed to acetic acid concentrations of up to 40 mM and NaCl concentrations between 2 and 4% was determined. A reduction in the intracellular pH was observed for increasing acetic acid concentrations with an external pH of 3.2. Comparing intracellular pH with Weibull model predictions showed that decreases in intracellular pH were significantly correlated with the corresponding times required to achieve a 5-log reduction in the number of bacteria.
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Miller FA, Ramos B, Gil MM, Brandão TRS, Teixeira P, Silva CLM. Influence of pH, type of acid and recovery media on the thermal inactivation of Listeria innocua. Int J Food Microbiol 2009; 133:121-8. [PMID: 19481827 DOI: 10.1016/j.ijfoodmicro.2009.05.007] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2009] [Revised: 05/04/2009] [Accepted: 05/05/2009] [Indexed: 11/20/2022]
Abstract
Acidification of foods with organic acids, either by fermentation or by intentional addition, is an important and common mechanism for controlling foodborne pathogens in a diversity of food products. The objective of this work was to study thermal inactivation of Listeria innocua, an acid tolerant microorganism, at 52.5, 60.0 and 65.0 degrees C, at different pH values (4.5, 6.0 and 7.5), using three types of acid (lactic, acetic and hydrochloric) and three different plating media (Tryptic Soy Agar with 0.6% yeast extract-TSAYE; TSAYE plus 5% NaCl-TSAYE+5%NaCl; and Palcam Agar with selective supplement-Palcam Agar), according to a 3(4) factorial experimental design. Survival data experimentally obtained were fitted with a Gompertz-inspired model and kinetic parameters (shoulder, maximum inactivation rate-k(max), and tail) were estimated for all conditions considered. The influence of temperature, pH, type of acid and enumeration media on kinetic parameters was assessed. Results showed that, with the exception of the type of acid, all the remaining factors and their combinations significantly affected the shoulder period and k(max). In relation to tail, temperature and recovery media were the affectable factors. It was concluded that the survival of this bacteria is higher when combining low temperature with neutral pH, and when TSAYE is the enumeration medium. Bigelow-inspired models were successfully developed and describe accurately the temperature and pH effects on the kinetic parameters.
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Affiliation(s)
- Fátima A Miller
- CBQF, Universidade Católica Portuguesa, Rua Dr. António Bernardino de Almeida, Porto, Portugal
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Janssen M, Verhulst A, Valdramidis V, Devlieghere F, Van Impe J, Geeraerd A. Inactivation model equations and their associated parameter values obtained under static acid stress conditions cannot be used directly for predicting inactivation under dynamic conditions. Int J Food Microbiol 2008; 128:136-45. [DOI: 10.1016/j.ijfoodmicro.2008.06.009] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2008] [Revised: 06/04/2008] [Accepted: 06/10/2008] [Indexed: 11/15/2022]
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