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For: Tremblay M, Teng Y, Paquette M, Waters R, Conconi A. Complementary roles of yeast Rad4p and Rad34p in nucleotide excision repair of active and inactive rRNA gene chromatin. Mol Cell Biol 2008;28:7504-13. [PMID: 18936173 PMCID: PMC2593431 DOI: 10.1128/mcb.00137-08] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2008] [Revised: 02/26/2008] [Accepted: 10/08/2008] [Indexed: 02/03/2023]  Open
Number Cited by Other Article(s)
1
Smerdon MJ, Wyrick JJ, Delaney S. A half century of exploring DNA excision repair in chromatin. J Biol Chem 2023;299:105118. [PMID: 37527775 PMCID: PMC10498010 DOI: 10.1016/j.jbc.2023.105118] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 07/23/2023] [Accepted: 07/25/2023] [Indexed: 08/03/2023]  Open
2
Singh L, Nair L, Kumar D, Arora MK, Bajaj S, Gadewar M, Mishra SS, Rath SK, Dubey AK, Kaithwas G, Choudhary M, Singh M. Hypoxia induced lactate acidosis modulates tumor microenvironment and lipid reprogramming to sustain the cancer cell survival. Front Oncol 2023;13:1034205. [PMID: 36761981 PMCID: PMC9906992 DOI: 10.3389/fonc.2023.1034205] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 01/04/2023] [Indexed: 01/26/2023]  Open
3
Paillé A, Charton R, Dholandre Q, Conconi A. The Efficiency of Global Genome-Nucleotide Excision Repair is Linked to the Fraction of Open rRNA Gene Chromatin, in Yeast. Photochem Photobiol 2021;98:696-706. [PMID: 34921417 DOI: 10.1111/php.13580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 12/13/2021] [Indexed: 11/29/2022]
4
Mechanistic insights in transcription-coupled nucleotide excision repair of ribosomal DNA. Proc Natl Acad Sci U S A 2018;115:E6770-E6779. [PMID: 29967171 DOI: 10.1073/pnas.1716581115] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
5
Guintini L, Tremblay M, Toussaint M, D'Amours A, Wellinger RE, Wellinger RJ, Conconi A. Repair of UV-induced DNA lesions in natural Saccharomyces cerevisiae telomeres is moderated by Sir2 and Sir3, and inhibited by yKu-Sir4 interaction. Nucleic Acids Res 2017;45:4577-4589. [PMID: 28334768 PMCID: PMC5416773 DOI: 10.1093/nar/gkx123] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Accepted: 02/10/2017] [Indexed: 01/28/2023]  Open
6
Peyresaubes F, Zeledon C, Guintini L, Charton R, Muguet A, Conconi A. RNA Polymerase-I-Dependent Transcription-coupled Nucleotide Excision Repair of UV-Induced DNA Lesions at Transcription Termination Sites, in Saccharomyces cerevisiae. Photochem Photobiol 2017;93:363-374. [PMID: 27935059 DOI: 10.1111/php.12690] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Accepted: 11/16/2016] [Indexed: 11/28/2022]
7
Waters R, van Eijk P, Reed S. Histone modification and chromatin remodeling during NER. DNA Repair (Amst) 2015;36:105-113. [DOI: 10.1016/j.dnarep.2015.09.013] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
8
Peyresaubes F, D'Amours A, Leduc F, Grégoire MC, Boissonneault G, Conconi A. Immuno-capture of UVDE generated 3'-OH ends at UV photoproducts. DNA Repair (Amst) 2015;36:156-161. [PMID: 26547444 DOI: 10.1016/j.dnarep.2015.09.019] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
9
Charton R, Guintini L, Peyresaubes F, Conconi A. Repair of UV induced DNA lesions in ribosomal gene chromatin and the role of "Odd" RNA polymerases (I and III). DNA Repair (Amst) 2015;36:49-58. [PMID: 26411875 DOI: 10.1016/j.dnarep.2015.09.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
10
Krasikova YS, Rechkunova NI, Maltseva EA, Anarbaev RO, Pestryakov PE, Sugasawa K, Min JH, Lavrik OI. Human and yeast DNA damage recognition complexes bind with high affinity DNA structures mimicking in size transcription bubble. J Mol Recognit 2014;26:653-61. [PMID: 24277610 DOI: 10.1002/jmr.2308] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2013] [Revised: 07/26/2013] [Accepted: 08/06/2013] [Indexed: 02/05/2023]
11
DNA repair mechanisms and the bypass of DNA damage in Saccharomyces cerevisiae. Genetics 2013;193:1025-64. [PMID: 23547164 DOI: 10.1534/genetics.112.145219] [Citation(s) in RCA: 159] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
12
Tremblay M, Charton R, Wittner M, Levasseur G, Griesenbeck J, Conconi A. UV light-induced DNA lesions cause dissociation of yeast RNA polymerases-I and establishment of a specialized chromatin structure at rRNA genes. Nucleic Acids Res 2013;42:380-95. [PMID: 24097442 PMCID: PMC3874186 DOI: 10.1093/nar/gkt871] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
13
Lafrance-Vanasse J, Arseneault G, Cappadocia L, Legault P, Omichinski JG. Structural and functional evidence that Rad4 competes with Rad2 for binding to the Tfb1 subunit of TFIIH in NER. Nucleic Acids Res 2013;41:2736-45. [PMID: 23295669 PMCID: PMC3575800 DOI: 10.1093/nar/gks1321] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
14
Waters R, Evans K, Bennett M, Yu S, Reed S. Nucleotide excision repair in cellular chromatin: studies with yeast from nucleotide to gene to genome. Int J Mol Sci 2012;13:11141-11164. [PMID: 23109843 PMCID: PMC3472735 DOI: 10.3390/ijms130911141] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2012] [Revised: 08/22/2012] [Accepted: 08/24/2012] [Indexed: 11/16/2022]  Open
15
Pelloux J, Tremblay M, Wellinger RJ, Conconi A. UV-induced DNA damage and DNA repair in ribosomal genes chromatin. Methods Mol Biol 2012;809:303-320. [PMID: 22113285 DOI: 10.1007/978-1-61779-376-9_21] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
16
Toussaint M, Wellinger RJ, Conconi A. Differential participation of homologous recombination and nucleotide excision repair in yeast survival to ultraviolet light radiation. Mutat Res 2010;698:52-9. [PMID: 20348017 DOI: 10.1016/j.mrgentox.2010.03.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2009] [Revised: 02/16/2010] [Accepted: 03/20/2010] [Indexed: 01/17/2023]
17
Tremblay M, Toussaint M, D'Amours A, Conconi A. Nucleotide excision repair and photolyase repair of UV photoproducts in nucleosomes: assessing the existence of nucleosome and non-nucleosome rDNA chromatin in vivo. Biochem Cell Biol 2009;87:337-46. [PMID: 19234545 DOI: 10.1139/o08-128] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
18
Current awareness on yeast. Yeast 2009. [DOI: 10.1002/yea.1621] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
19
Lux ex tenebris: nucleotide resolution DNA repair and nucleosome mapping. Methods 2009;48:23-34. [PMID: 19269326 DOI: 10.1016/j.ymeth.2009.02.017] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2009] [Accepted: 02/25/2009] [Indexed: 11/21/2022]  Open
20
Waters R, Teng Y, Yu Y, Yu S, Reed SH. Tilting at windmills? The nucleotide excision repair of chromosomal DNA. DNA Repair (Amst) 2008;8:146-52. [PMID: 19041427 DOI: 10.1016/j.dnarep.2008.11.001] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/04/2008] [Indexed: 10/21/2022]
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