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For: Zolan ME. Chromosome-length polymorphism in fungi. Microbiol Rev 1995;59:686-98. [PMID: 8531892 PMCID: PMC239395 DOI: 10.1128/mr.59.4.686-698.1995] [Citation(s) in RCA: 95] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Number Cited by Other Article(s)
1
Cissé OH, Ma L, Kovacs JA. Retracing the evolution of Pneumocystis species, with a focus on the human pathogen Pneumocystis jirovecii. Microbiol Mol Biol Rev 2024;88:e0020222. [PMID: 38587383 DOI: 10.1128/mmbr.00202-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/09/2024]  Open
2
Das S, T C, Selvasembian R, Prabhu AA. Mixed food waste valorization using a thermostable glucoamylase enzyme produced by a newly isolated filamentous fungus: A sustainable biorefinery approach. CHEMOSPHERE 2024;352:141480. [PMID: 38401866 DOI: 10.1016/j.chemosphere.2024.141480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 01/26/2024] [Accepted: 02/15/2024] [Indexed: 02/26/2024]
3
Gautier A, Laval V, Faure S, Rouxel T, Balesdent MH. Polymorphism of Avirulence Genes and Adaptation to Brassica Resistance Genes Is Gene-Dependent in the Phytopathogenic Fungus Leptosphaeria maculans. PHYTOPATHOLOGY 2023;113:1222-1232. [PMID: 36802873 DOI: 10.1094/phyto-12-22-0466-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
4
Becerra S, Baroncelli R, Boufleur TR, Sukno SA, Thon MR. Chromosome-level analysis of the Colletotrichum graminicola genome reveals the unique characteristics of core and minichromosomes. Front Microbiol 2023;14:1129319. [PMID: 37032845 PMCID: PMC10076810 DOI: 10.3389/fmicb.2023.1129319] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Accepted: 02/28/2023] [Indexed: 04/11/2023]  Open
5
Ogaji YO, Lee RC, Sawbridge TI, Cocks BG, Daetwyler HD, Kaur S. De Novo Long-Read Whole-Genome Assemblies and the Comparative Pan-Genome Analysis of Ascochyta Blight Pathogens Affecting Field Pea. J Fungi (Basel) 2022;8:jof8080884. [PMID: 36012871 PMCID: PMC9410150 DOI: 10.3390/jof8080884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 08/12/2022] [Accepted: 08/15/2022] [Indexed: 11/16/2022]  Open
6
Montezano Fernandes F, Vieira de Queiroz M, Lopes da Silva L, Maria Queiroz Azevedo D, Luis Badel J, Couto Alfenas A. Chromosomal polymorphism of the Ceratocystis fimbriata species complex in Brazil. Fungal Genet Biol 2022;162:103728. [PMID: 35932991 DOI: 10.1016/j.fgb.2022.103728] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 07/15/2022] [Accepted: 07/23/2022] [Indexed: 11/04/2022]
7
Späth GF, Bussotti G. GIP: an open-source computational pipeline for mapping genomic instability from protists to cancer cells. Nucleic Acids Res 2021;50:e36. [PMID: 34928370 PMCID: PMC8989552 DOI: 10.1093/nar/gkab1237] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Revised: 11/01/2021] [Accepted: 12/03/2021] [Indexed: 11/25/2022]  Open
8
Chen JY, Klosterman SJ, Hu XP, Dai XF, Subbarao KV. Key Insights and Research Prospects at the Dawn of the Population Genomics Era for Verticillium dahliae. ANNUAL REVIEW OF PHYTOPATHOLOGY 2021;59:31-51. [PMID: 33891830 DOI: 10.1146/annurev-phyto-020620-121925] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
9
Bertazzoni S, Jones DAB, Phan HT, Tan KC, Hane JK. Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and redundancy of virulence-related functions within an accessory chromosome. BMC Genomics 2021;22:382. [PMID: 34034667 PMCID: PMC8146201 DOI: 10.1186/s12864-021-07699-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Accepted: 05/11/2021] [Indexed: 11/19/2022]  Open
10
Smith CA. Macrosynteny analysis between Lentinula edodes and Lentinula novae-zelandiae reveals signals of domestication in Lentinula edodes. Sci Rep 2021;11:9845. [PMID: 33972587 PMCID: PMC8110776 DOI: 10.1038/s41598-021-89146-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Accepted: 04/08/2021] [Indexed: 12/03/2022]  Open
11
Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus. PLoS Genet 2021;17:e1009386. [PMID: 33591993 PMCID: PMC7909708 DOI: 10.1371/journal.pgen.1009386] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 02/26/2021] [Accepted: 01/26/2021] [Indexed: 12/11/2022]  Open
12
Jiang L, Stärkel P, Fan JG, Fouts DE, Bacher P, Schnabl B. The gut mycobiome: a novel player in chronic liver diseases. J Gastroenterol 2021;56:1-11. [PMID: 33151407 PMCID: PMC7819863 DOI: 10.1007/s00535-020-01740-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/27/2020] [Accepted: 10/15/2020] [Indexed: 02/07/2023]
13
Korfanty G, Stanley K, Lammers K, Fan Y, Xu J. Variations in sexual fitness among natural strains of the opportunistic human fungal pathogen Aspergillus fumigatus. INFECTION GENETICS AND EVOLUTION 2020;87:104640. [PMID: 33246083 DOI: 10.1016/j.meegid.2020.104640] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2020] [Revised: 10/05/2020] [Accepted: 11/21/2020] [Indexed: 10/22/2022]
14
Genomic Organization and Generation of Genetic Variability in the RHS (Retrotransposon Hot Spot) Protein Multigene Family in Trypanosoma cruzi. Genes (Basel) 2020;11:genes11091085. [PMID: 32957642 PMCID: PMC7563717 DOI: 10.3390/genes11091085] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 09/11/2020] [Accepted: 09/14/2020] [Indexed: 12/15/2022]  Open
15
Mahmoudjanlou Y, Dahlmann TA, Kück U. Molecular analysis of mating type loci from the mycophenolic acid producer Penicillium brevicompactum: Phylogeny and MAT protein characterization suggest a cryptic sexual life cycle. Fungal Biol 2020;124:821-833. [PMID: 32883432 DOI: 10.1016/j.funbio.2020.07.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Revised: 06/25/2020] [Accepted: 07/07/2020] [Indexed: 12/31/2022]
16
Yang H, Yu H, Ma LJ. Accessory Chromosomes in Fusarium oxysporum. PHYTOPATHOLOGY 2020;110:1488-1496. [PMID: 32692281 PMCID: PMC8086798 DOI: 10.1094/phyto-03-20-0069-ia] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
17
Todd RT, Selmecki A. Expandable and reversible copy number amplification drives rapid adaptation to antifungal drugs. eLife 2020;9:e58349. [PMID: 32687060 PMCID: PMC7371428 DOI: 10.7554/elife.58349] [Citation(s) in RCA: 56] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 07/09/2020] [Indexed: 12/13/2022]  Open
18
Armitage AD, Cockerton HM, Sreenivasaprasad S, Woodhall J, Lane CR, Harrison RJ, Clarkson JP. Genomics Evolutionary History and Diagnostics of the Alternaria alternata Species Group Including Apple and Asian Pear Pathotypes. Front Microbiol 2020;10:3124. [PMID: 32038562 PMCID: PMC6989435 DOI: 10.3389/fmicb.2019.03124] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Accepted: 12/24/2019] [Indexed: 02/04/2023]  Open
19
Bravo Ruiz G, Ross ZK, Holmes E, Schelenz S, Gow NAR, Lorenz A. Rapid and extensive karyotype diversification in haploid clinical Candida auris isolates. Curr Genet 2019;65:1217-1228. [PMID: 31020384 PMCID: PMC6744574 DOI: 10.1007/s00294-019-00976-w] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 04/09/2019] [Accepted: 04/15/2019] [Indexed: 11/30/2022]
20
The Aspergillus fumigatus Mismatch Repair MSH2 Homolog Is Important for Virulence and Azole Resistance. mSphere 2019;4:4/4/e00416-19. [PMID: 31391280 PMCID: PMC6686229 DOI: 10.1128/msphere.00416-19] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
21
Lofgren LA, Uehling JK, Branco S, Bruns TD, Martin F, Kennedy PG. Genome‐based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles. Mol Ecol 2019;28:721-730. [DOI: 10.1111/mec.14995] [Citation(s) in RCA: 97] [Impact Index Per Article: 19.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Revised: 11/22/2018] [Accepted: 11/27/2018] [Indexed: 12/28/2022]
22
Phenotypic instability in fungi. ADVANCES IN APPLIED MICROBIOLOGY 2019;107:141-187. [PMID: 31128747 DOI: 10.1016/bs.aambs.2019.03.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
23
Syme RA, Tan KC, Rybak K, Friesen TL, McDonald BA, Oliver RP, Hane JK. Pan-Parastagonospora Comparative Genome Analysis-Effector Prediction and Genome Evolution. Genome Biol Evol 2018;10:2443-2457. [PMID: 30184068 PMCID: PMC6152946 DOI: 10.1093/gbe/evy192] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/03/2018] [Indexed: 01/01/2023]  Open
24
Genomic Analysis of the Insect-Killing Fungus Beauveria bassiana JEF-007 as a Biopesticide. Sci Rep 2018;8:12388. [PMID: 30120392 PMCID: PMC6098154 DOI: 10.1038/s41598-018-30856-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Accepted: 08/07/2018] [Indexed: 02/07/2023]  Open
25
Plissonneau C, Hartmann FE, Croll D. Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome. BMC Biol 2018;16:5. [PMID: 29325559 PMCID: PMC5765654 DOI: 10.1186/s12915-017-0457-4] [Citation(s) in RCA: 90] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2017] [Accepted: 11/16/2017] [Indexed: 01/01/2023]  Open
26
The Influence of Genetic Stability on Aspergillus fumigatus Virulence and Azole Resistance. G3-GENES GENOMES GENETICS 2018;8:265-278. [PMID: 29150592 PMCID: PMC5765354 DOI: 10.1534/g3.117.300265] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
27
Mehrabi R, Mirzadi Gohari A, Kema GHJ. Karyotype Variability in Plant-Pathogenic Fungi. ANNUAL REVIEW OF PHYTOPATHOLOGY 2017;55:483-503. [PMID: 28777924 DOI: 10.1146/annurev-phyto-080615-095928] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
28
Plissonneau C, Benevenuto J, Mohd-Assaad N, Fouché S, Hartmann FE, Croll D. Using Population and Comparative Genomics to Understand the Genetic Basis of Effector-Driven Fungal Pathogen Evolution. FRONTIERS IN PLANT SCIENCE 2017;8:119. [PMID: 28217138 PMCID: PMC5289978 DOI: 10.3389/fpls.2017.00119] [Citation(s) in RCA: 62] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2016] [Accepted: 01/20/2017] [Indexed: 05/20/2023]
29
Lopes ML, Paulillo SCDL, Godoy A, Cherubin RA, Lorenzi MS, Giometti FHC, Bernardino CD, Amorim Neto HBD, Amorim HVD. Ethanol production in Brazil: a bridge between science and industry. Braz J Microbiol 2016;47 Suppl 1:64-76. [PMID: 27818090 PMCID: PMC5156502 DOI: 10.1016/j.bjm.2016.10.003] [Citation(s) in RCA: 104] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Accepted: 10/05/2016] [Indexed: 12/13/2022]  Open
30
The Evolution of Orphan Regions in Genomes of a Fungal Pathogen of Wheat. mBio 2016;7:mBio.01231-16. [PMID: 27795389 PMCID: PMC5082898 DOI: 10.1128/mbio.01231-16] [Citation(s) in RCA: 74] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
31
Depotter JRL, Deketelaere S, Inderbitzin P, Tiedemann AV, Höfte M, Subbarao KV, Wood TA, Thomma BPHJ. Verticillium longisporum, the invisible threat to oilseed rape and other brassicaceous plant hosts. MOLECULAR PLANT PATHOLOGY 2016;17:1004-16. [PMID: 26663851 PMCID: PMC6638321 DOI: 10.1111/mpp.12350] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2015] [Revised: 12/03/2015] [Accepted: 12/04/2015] [Indexed: 05/21/2023]
32
Anderson C, Khan MA, Catanzariti AM, Jack CA, Nemri A, Lawrence GJ, Upadhyaya NM, Hardham AR, Ellis JG, Dodds PN, Jones DA. Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini. BMC Genomics 2016;17:667. [PMID: 27550217 PMCID: PMC4994203 DOI: 10.1186/s12864-016-3011-9] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2016] [Accepted: 08/11/2016] [Indexed: 12/01/2022]  Open
33
Arango Isaza RE, Diaz-Trujillo C, Dhillon B, Aerts A, Carlier J, Crane CF, V. de Jong T, de Vries I, Dietrich R, Farmer AD, Fortes Fereira C, Garcia S, Guzman M, Hamelin RC, Lindquist EA, Mehrabi R, Quiros O, Schmutz J, Shapiro H, Reynolds E, Scalliet G, Souza M, Stergiopoulos I, Van der Lee TAJ, De Wit PJGM, Zapater MF, Zwiers LH, Grigoriev IV, Goodwin SB, Kema GHJ. Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control. PLoS Genet 2016;12:e1005876. [PMID: 27512984 PMCID: PMC4981457 DOI: 10.1371/journal.pgen.1005876] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2015] [Accepted: 01/27/2016] [Indexed: 12/03/2022]  Open
34
Testa AC, Oliver RP, Hane JK. OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes. Genome Biol Evol 2016;8:2044-64. [PMID: 27289099 PMCID: PMC4943192 DOI: 10.1093/gbe/evw121] [Citation(s) in RCA: 83] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/14/2016] [Indexed: 12/03/2022]  Open
35
Williams AH, Sharma M, Thatcher LF, Azam S, Hane JK, Sperschneider J, Kidd BN, Anderson JP, Ghosh R, Garg G, Lichtenzveig J, Kistler HC, Shea T, Young S, Buck SAG, Kamphuis LG, Saxena R, Pande S, Ma LJ, Varshney RK, Singh KB. Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics 2016;17:191. [PMID: 26945779 PMCID: PMC4779268 DOI: 10.1186/s12864-016-2486-8] [Citation(s) in RCA: 67] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2015] [Accepted: 02/17/2016] [Indexed: 11/23/2022]  Open
36
Milgroom MG, Jiménez-Gasco MDM, Olivares García C, Drott MT, Jiménez-Díaz RM. Recombination between clonal lineages of the asexual fungus Verticillium dahliae detected by genotyping by sequencing. PLoS One 2014;9:e106740. [PMID: 25181515 PMCID: PMC4152335 DOI: 10.1371/journal.pone.0106740] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2014] [Accepted: 08/09/2014] [Indexed: 11/18/2022]  Open
37
Sasaki AA, Fernandes GF, Rodrigues AM, Lima FM, Marini MM, dos S. Feitosa L, de Melo Teixeira M, Felipe MSS, da Silveira JF, de Camargo ZP. Chromosomal polymorphism in the Sporothrix schenckii complex. PLoS One 2014;9:e86819. [PMID: 24466257 PMCID: PMC3900657 DOI: 10.1371/journal.pone.0086819] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2013] [Accepted: 12/14/2013] [Indexed: 01/18/2023]  Open
38
Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen. PLoS Genet 2013;9:e1003567. [PMID: 23785303 PMCID: PMC3681731 DOI: 10.1371/journal.pgen.1003567] [Citation(s) in RCA: 104] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2012] [Accepted: 05/01/2013] [Indexed: 12/12/2022]  Open
39
de Jonge R, Bolton MD, Kombrink A, van den Berg GCM, Yadeta KA, Thomma BPHJ. Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen. Genome Res 2013;23:1271-82. [PMID: 23685541 PMCID: PMC3730101 DOI: 10.1101/gr.152660.112] [Citation(s) in RCA: 206] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
40
The tempo and modes of evolution of reproductive isolation in fungi. Heredity (Edinb) 2012;109:204-14. [PMID: 22669076 DOI: 10.1038/hdy.2012.30] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
41
D'Hondt L, Höfte M, Van Bockstaele E, Leus L. Applications of flow cytometry in plant pathology for genome size determination, detection and physiological status. MOLECULAR PLANT PATHOLOGY 2011;12:815-28. [PMID: 21726378 PMCID: PMC6640489 DOI: 10.1111/j.1364-3703.2011.00711.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
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Inderbitzin P, Davis RM, Bostock RM, Subbarao KV. The ascomycete Verticillium longisporum is a hybrid and a plant pathogen with an expanded host range. PLoS One 2011;6:e18260. [PMID: 21455321 PMCID: PMC3063834 DOI: 10.1371/journal.pone.0018260] [Citation(s) in RCA: 134] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2011] [Accepted: 02/23/2011] [Indexed: 01/24/2023]  Open
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Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. mBio 2011;2:e00342-10. [PMID: 21304167 PMCID: PMC3037005 DOI: 10.1128/mbio.00342-10] [Citation(s) in RCA: 138] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
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Sionov E, Lee H, Chang YC, Kwon-Chung KJ. Cryptococcus neoformans overcomes stress of azole drugs by formation of disomy in specific multiple chromosomes. PLoS Pathog 2010;6:e1000848. [PMID: 20368972 PMCID: PMC2848560 DOI: 10.1371/journal.ppat.1000848] [Citation(s) in RCA: 246] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2009] [Accepted: 03/05/2010] [Indexed: 12/20/2022]  Open
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Gilbert GS, Parker IM. Rapid evolution in a plant-pathogen interaction and the consequences for introduced host species. Evol Appl 2010;3:144-56. [PMID: 25567915 PMCID: PMC3352484 DOI: 10.1111/j.1752-4571.2009.00107.x] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2009] [Accepted: 10/26/2009] [Indexed: 11/30/2022]  Open
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Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola. PLoS One 2009;4:e5863. [PMID: 19516898 PMCID: PMC2689623 DOI: 10.1371/journal.pone.0005863] [Citation(s) in RCA: 111] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2008] [Accepted: 03/27/2009] [Indexed: 11/24/2022]  Open
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Sun S, Xu J. Chromosomal rearrangements between serotype A and D strains in Cryptococcus neoformans. PLoS One 2009;4:e5524. [PMID: 19436753 PMCID: PMC2677675 DOI: 10.1371/journal.pone.0005524] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2008] [Accepted: 01/18/2009] [Indexed: 12/30/2022]  Open
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Pérez G, Pangilinan J, Pisabarro AG, Ramírez L. Telomere organization in the ligninolytic basidiomycete Pleurotus ostreatus. Appl Environ Microbiol 2009;75:1427-36. [PMID: 19114509 PMCID: PMC2648151 DOI: 10.1128/aem.01889-08] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2008] [Accepted: 12/21/2008] [Indexed: 01/19/2023]  Open
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Aboukhaddour R, Cloutier S, Ballance GM, Lamari L. Genome characterization of Pyrenophora tritici-repentis isolates reveals high plasticity and independent chromosomal location of ToxA and ToxB. MOLECULAR PLANT PATHOLOGY 2009;10:201-12. [PMID: 19236569 PMCID: PMC6640439 DOI: 10.1111/j.1364-3703.2008.00520.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Hane JK, Lowe RGT, Solomon PS, Tan KC, Schoch CL, Spatafora JW, Crous PW, Kodira C, Birren BW, Galagan JE, Torriani SFF, McDonald BA, Oliver RP. Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum. THE PLANT CELL 2007;19:3347-68. [PMID: 18024570 PMCID: PMC2174895 DOI: 10.1105/tpc.107.052829] [Citation(s) in RCA: 174] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2007] [Revised: 09/11/2007] [Accepted: 10/15/2007] [Indexed: 05/18/2023]
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