Insights into the Early Steps of the Symbiotic Interaction between Soybean (Glycine max) and Sinorhizobium fredii Symbiosis Using Transcriptome, Small RNA, and Degradome Sequencing

Symbiotic nitrogen fixation carried out by the soybean-rhizobia symbiosis increases soybean yield and reduces the amount of nitrogen fertilizer that has been applied. MicroRNAs (miRNAs) are crucial in plant growth and development, prompting an investigation into their role in the symbiotic interaction of soybean with partner rhizobia. Through integrated small RNA, transcriptome, and degradome sequencing analysis, 1215 known miRNAs, 314 of them conserved, and 187 novel miRNAs were identified, with 44 differentially expressed miRNAs in soybean roots inoculated with Sinorhizobium fredii HH103 and a ttsI mutant. The study unveiled that the known miRNA gma-MIR398a-p5 was downregulated in the presence of the ttsI mutation, while the target gene of gma-MIR398a-p5, Glyma.06G007500, associated with nitrogen metabolism, was upregulated. The results of this study offer insights for breeding high-efficiency nitrogen-fixing soybean varieties, enhancing crop yield and quality.

Nitrate removal in iron sulfide-driven autotrophic denitrification biofilter: Biochemical and chemical transformation pathways and its underlying microbial mechanism

Iron sulfides-based autotrophic denitrification (IAD) is effective for treating nitrate-contaminated wastewater. However, the complex nitrate transformation pathways coupled with sulfur and iron cycles in IADs are still unclear. In this study, two columns (abiotic vs biotic) with iron sulfides (FeS) as the packing materials were constructed and operated continuously. In the abiotic column, FeS chemically reduced nitrate to ammonium under the ambient condition; this chemical reduction reaction pathway was spontaneous and has been overlooked in IAD reactors. In the biotic column (IAD biofilter), the complex nitrogen-transformation network was composed of chemical reduction, autotrophic denitrification, dissimilatory nitrate reduction to ammonium (DNRA) and sulfate reducing ammonium oxidation (Sulfammox). Metagenomic analysis and XPS characterization of the IAD biofilter further validated the roles of functional microbial communities (e.g., Acidovorax, Diaphorobacter, Desulfuromonas) in nitrate reduction process coupled with iron and sulfur cycles. This study gives an in-depth insight into the nitrogen transformations in IAD system and provides fundamental evidence about the underlying microbial mechanism for its further application in biological nitrogen removal.

Simultaneous denitrification and antibiotic degradation of low-C/N-ratio wastewater by a three-dimensional biofilm-electrode reactor: Performance and microbial response

Three-dimensional biofilm-electrode reactors (3D-BERs) were fabricated and used to simultaneously remove nitrate and metronidazole (MNZ) from low-C/N-ratio wastewater. The results showed that 1 mg/L MNZ significantly promoted nitrate removal. After MNZ was added to the reactor, the removal efficiencies of total nitrogen (TN) and NO₃^--N increased significantly from 18.97% and 52.09% to 71.63% and 99.98% within 6 h, respectively. The MNZ-removal kinetics conformed to a pseudo-first-order model, and the removal rate constant reached a maximum value of 0.853 h^-1, which was 4.1 and 2.8 times higher than that of pure microorganisms and pure electrochemical reactors, respectively. This indicated that the 3D-BERs constructed in this study were capable of simultaneous MNZ degradation and denitrification. In the presence of nitrate, six MNZ-degradation intermediates were identified, and four MNZ transformation pathways were proposed, including cleavage of hydroxyethyl groups, reduction of nitro groups, N-denitration, and deprotonation of side-chain hydroxyl groups. High-throughput sequencing revealed that the reactor was rich in various MNZ-degraders and denitrifiers, such as Hydrogenophaga, Methylomonas, Crenohrix, Dechloromonas, and Methylophilus. A function prediction analysis of nitrogen metabolism showed that the 3D-BER reactor with MNZ had higher denitrification activity than the other reactors tested. It was speculated that the intermediates produced by MNZ could act as carbon sources allowing denitrifying bacteria to perform denitrification, which made a nonnegligible contribution to the removal of nitrogen.

The indispensable role of assimilation in methane driven nitrate removal

Methane is a greenhouse gas that can be released from sludge anaerobic fermentation in wastewater treatment plants. Methane is also an alternative additional carbon source for deep nitrate removal of secondary effluent. A sequencing experiment was conducted to study the efficacy of nitrate removal with methane as the sole carbon source. The maximum nitrate removal rate was 17.2 mg-N·L^-1·d^-1. Nitrate removal was confirmed to arise via two pathways: aerobic methane oxidation coupled to denitrification (AME-D) contributed to 55% of the nitrate removal with the rest stemming from assimilation by methanotrophs. Additional study revealed that nitrate assimilated by methanotrophs was used for the synthesis of proteins, resulting in a protein content of 52.2% dry weight. Metagenomic sequencing revealed a high abundance of nitrate assimilation and glutamine synthetase genes, which were primarily provided by methanotrophs (mainly Methylomonas). Assimilatory nitrate removal by methanotrophs has a high potential for advanced nitrogen removal and for alleviating methane emissions. The nitrogen-rich biomass produced by nitrate absorption could also be used as a biofertilizer for nitrogen recycling.

Facilitating effects of plant hormones on biomass production and nutrients removal by Tetraselmis cordiformis for advanced sewage treatment and its mechanism

Advanced sewage treatment by microalgae is regarded as a promising method for addressing eutrophication. To improve sewage treatment, three kinds of plant hormones including auxin (indole-3-acetic acid, IAA), cytokinin (Zeatin), and brassinosteroid, were chosen to measure the influence of plant hormones on nitrogen and phosphorus removal by Tetraselmis cordiformis and to analyze their mechanisms, including photosynthesis, nutrient metabolism, and gene transcription. The results indicated that the maximal removal efficiencies of total nitrogen and phosphate by T. cordiformis were elevated by the plant hormones by 184.3% and 53.2%, respectively. The chlorophyll a content was increased by 1.1 times by the plant hormones in comparison with the control. Moreover, after being stimulated by plant hormones, the activities of nitrate reductase (NR) and glutamine synthetase (GS) increased by 90.4% and 82.1%, respectively, in comparison with the control. Supplementation with plant hormones also significantly elevated the mRNA expression level of GS-related gene by 30.9%. This study demonstrated that plant hormones could significantly promote the nutrient removal of microalgae for sewage treatment in artificial laboratory conditions and provided theoretical support for its further practical full-scale application under variable conditions.