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Balabova DV, Belash EA, Belenkaya SV, Shcherbakov DN, Belov AN, Koval AD, Mironova AV, Bondar AA, Volosnikova EA, Arkhipov SG, Sokolova OO, Chirkova VY, Elchaninov VV. Biochemical Properties of a Promising Milk-Clotting Enzyme, Moose ( Alces alces) Recombinant Chymosin. Foods 2023; 12:3772. [PMID: 37893665 PMCID: PMC10606240 DOI: 10.3390/foods12203772] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 10/09/2023] [Accepted: 10/10/2023] [Indexed: 10/29/2023] Open
Abstract
Moose (Alces alces) recombinant chymosin with a milk-clotting activity of 86 AU/mL was synthesized in the Kluyveromyces lactis expression system. After precipitation with ammonium sulfate and chromatographic purification, a sample of genetically engineered moose chymosin with a specific milk-clotting activity of 15,768 AU/mg was obtained, which was used for extensive biochemical characterization of the enzyme. The threshold of the thermal stability of moose chymosin was 55 °C; its complete inactivation occurred after heating at 60 °C. The total proteolytic activity of moose chymosin was 0.332 A280 units. The ratio of milk-clotting and total proteolytic activities of the enzyme was 0.8. The Km, kcat and kcat/Km values of moose chymosin were 4.7 μM, 98.7 s-1, and 21.1 μM-1 s-1, respectively. The pattern of change in the coagulation activity as a function of pH and Ca2+ concentration was consistent with the requirements for milk coagulants for cheese making. The optimum temperature of the enzyme was 50-55 °C. The introduction of Mg2+, Zn2+, Co2+, Ba2+, Fe2+, Mn2+, Ca2+, and Cu2+ into milk activated the coagulation ability of moose chymosin, while Ni ions on the contrary inhibited its activity. Using previously published data, we compared the biochemical properties of recombinant moose chymosin produced in bacterial (Escherichia coli) and yeast (K. lactis) producers.
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Affiliation(s)
- Dina V. Balabova
- Institute of Biology and Biotechnology, Altai State University, 656049 Barnaul, Russia
| | - Ekaterina A. Belash
- Institute of Biology and Biotechnology, Altai State University, 656049 Barnaul, Russia
| | - Svetlana V. Belenkaya
- State Research Center for Virology and Biotechnology “Vector”, Rospotrebnadzor, 630559 Koltsovo, Russia
| | - Dmitry N. Shcherbakov
- Institute of Biology and Biotechnology, Altai State University, 656049 Barnaul, Russia
- State Research Center for Virology and Biotechnology “Vector”, Rospotrebnadzor, 630559 Koltsovo, Russia
| | - Alexander N. Belov
- Federal Altai Scientific Center for Agrobiotechnologies, Siberian Research Institute of Cheese Making, 656910 Barnaul, Russia
| | - Anatoly D. Koval
- Federal Altai Scientific Center for Agrobiotechnologies, Siberian Research Institute of Cheese Making, 656910 Barnaul, Russia
| | - Anna V. Mironova
- Federal Altai Scientific Center for Agrobiotechnologies, Siberian Research Institute of Cheese Making, 656910 Barnaul, Russia
| | - Alexander A. Bondar
- JCF “Genomics”, Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia
| | - Ekaterina A. Volosnikova
- State Research Center for Virology and Biotechnology “Vector”, Rospotrebnadzor, 630559 Koltsovo, Russia
| | - Sergey G. Arkhipov
- Boreskov Institute of Catalysis, Siberan Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia
| | - Olga O. Sokolova
- Boreskov Institute of Catalysis, Siberan Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia
| | - Varvara Y. Chirkova
- Institute of Biology and Biotechnology, Altai State University, 656049 Barnaul, Russia
| | - Vadim V. Elchaninov
- Federal Altai Scientific Center for Agrobiotechnologies, Siberian Research Institute of Cheese Making, 656910 Barnaul, Russia
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Murashkin DE, Belenkaya SV, Bondar AA, Elchaninov VV, Shcherbakov DN. Analysis of Some Biochemical Properties of Recombinant Siberian Roe Deer (Capreolus pygargus) Chymosin Obtained in the Mammalian Cell Culture (CHO-K1). BIOCHEMISTRY. BIOKHIMIIA 2023; 88:1284-1295. [PMID: 37770395 DOI: 10.1134/s0006297923090080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 06/13/2023] [Accepted: 06/15/2023] [Indexed: 09/30/2023]
Abstract
Structure of the chymosin gene of Siberian roe deer (Capreolus pygargus) was established for the first time and its exon/intron organization was determined. Coding part of the chymosin gene of C. pygargus was reconstructed by the Golden Gate method and obtained as a DNA clone. Comparative sequence analysis of the roe deer, cow, and one-humped camel prochymosins revealed a number of amino acid substitutions at the sites forming the substrate-binding cavity of the enzyme and affecting the S4 and S1' + S3' specificity subsites. Integration vector pIP1 was used to construct a plasmid pIP1-Cap in order to express recombinant roe deer prochymosin gene in CHO-K1 cells. CHO-K1-CYM-Cap pool cells were obtained, allowing synthesis and secretion of recombinant prochymosin into the culture fluid. As a result of zymogen activation, a recombinant roe deer chymosin was obtained and its total milk-clotting activity was estimated to be 468.4 ± 11.1 IMCU/ml. Yield of the recombinant roe deer chymosin was 500 mg/liter or ≈468,000 IMCU/liter, which exceeds the yields of genetically engineered chymosins in most of the expression systems used. Basic biochemical properties of the obtained enzyme were compared with the commercial preparations of recombinant chymosins from one-humped camel (Camelus dromedarius) and cow (Bos taurus). Specific milk-clotting activity of the recombinant chymosin of C. pygargus was 938 ± 22 IMCU/mg, which was comparable to that of the reference enzymes. Non-specific proteolytic activity of the recombinant roe deer chymosin was 1.4-4.5 times higher than that of the cow and camel enzymes. In terms of coagulation specificity, recombinant chymosin of C. pygargus occupied an intermediate position between the genetically engineered analogs of B. taurus and C. dromedarius chymosins. Thermostability threshold of the recombinant roe deer chymosin was 55°C. At 60°C, the enzyme retained <1% of its initial milk-clotting activity, and its complete thermal inactivation was observed at 65°C.
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Affiliation(s)
- Denis E Murashkin
- State Research Center of Virology and Biotechnology VECTOR, Koltsovo, 630559, Russia
| | - Svetlana V Belenkaya
- State Research Center of Virology and Biotechnology VECTOR, Koltsovo, 630559, Russia.
- Novosibirsk State University, Novosibirsk, 630090, Russia
| | - Aleksandr A Bondar
- Genomics Core Facility, Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, 630090, Russia
| | - Vadim V Elchaninov
- Federal Altaic Scientific Center of Agrobiotechnology, Barnaul, 656910, Russia
| | - Dmitrii N Shcherbakov
- State Research Center of Virology and Biotechnology VECTOR, Koltsovo, 630559, Russia
- Altai State University, Barnaul, 656049, Russia
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Belenkaya SV, Shcherbakov DN, Chapoval AI, Esina TI, Elchaninov VV. The effect of thioredoxin and prochymosin coexpression on the refolding of recombinant alpaca chymosin. Vavilovskii Zhurnal Genet Selektsii 2023; 27:421-427. [PMID: 37465195 PMCID: PMC10350866 DOI: 10.18699/vjgb-23-50] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 12/02/2022] [Accepted: 12/07/2022] [Indexed: 07/20/2023] Open
Abstract
The milk-clotting enzyme chymosin is a member of the group of aspartate proteinases. Chymosin is the main component of rennet traditionally obtained from the stomachs of dairy calves and widely used to coagulate milk in the production of various types of cheese. Another source of chymosin, which does not require the killing of animals, is based on recombinant DNA technology. Recombinant alpaca chymosin has a number of valuable technological properties that make it attractive for use in cheese-making as an alternative to recombinant bovine chymosin. The purpose of this work is to study the effect of coexpression of thioredoxin and prochymosin on the refolding of the recombinant zymogen and the activity of alpaca chymosin. To achieve this goal, on the basis of the pET32a plasmid, an expression vector was constructed containing the thioredoxin A gene fused to the N-terminal sequence of the marker enzyme zymogen, alpaca prochymosin. Using the constructed vector, pET-TrxProChn, a strain-producer of the recombinant chimeric protein thioredoxin-prochymosin was obtained. The choice of prochymosin as a model protein is due to the ability of autocatalytic activation of this zymogen, in which the pro-fragment is removed, together with the thioredoxin sequence attached to it, with the formation of active chymosin. It is shown that Escherichia coli strain BL21 transformed with the pET-TrxProChn plasmid provides an efficient synthesis of the thioredoxin-prochymosin chimeric molecule. However, the chimeric protein accumulates in inclusion bodies in an insoluble form. Therefore, a renaturation procedure was used to obtain the active target enzyme. Fusion of thioredoxin capable of disulfide-reductase activity to the N-terminal sequence of prochymosin provides optimal conditions for zymogen refolding and increases the yield of recombinant alpaca chymosin immediately after activation and during long-term storage by 13 and 15 %, respectively. The inclusion of thioredoxin in the composition of the chimeric protein, apparently, contributes to the process of correct reduction of disulfide bonds in the prochymosin molecule, which is reflected in the dynamics of the increase in the milk-clotting activity of alpaca chymosin during long-term storage.
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Affiliation(s)
- S V Belenkaya
- State Research Center of Virology and Biotechnology "Vector", Rospotrebnadzor, Koltsovo, Novosibirsk region, Russia Altai State University, Barnaul, Russia
| | - D N Shcherbakov
- State Research Center of Virology and Biotechnology "Vector", Rospotrebnadzor, Koltsovo, Novosibirsk region, Russia Altai State University, Barnaul, Russia
| | | | - T I Esina
- State Research Center of Virology and Biotechnology "Vector", Rospotrebnadzor, Koltsovo, Novosibirsk region, Russia
| | - V V Elchaninov
- Federal Altai Scientific Center for Agrobiotechnology, Siberian Research Institute of Cheesemaking, Barnaul, Russia
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Balabova DV, Belenkaya SV, Volosnikova EA, Hermes T, Chirkova VY, Sharlaeva EA, Shcherbakov DN, Belov AN, Koval AD, Elchaninov VV. Can Recombinant Tree Shrew (Tupaia belangeri chinensis) Chymosin Coagulate Cow (Bos taurus) Milk? APPL BIOCHEM MICRO+ 2022. [DOI: 10.1134/s0003683822060023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
Abstract
Abstract
Genetically engineered chymosin from the tree shrew (Tupaia belangeri chinensis) has been obtained and partially characterized for the first time. The target enzyme was produced in Escherichia coli, strain BL21(DE3). It was shown that tree shrew recombinant chymosin coagulates cow milk (Bos taurus). The total and specific milk-clotting activity of the obtained enzyme was 0.7–5.3 IMCU/mL and 8.8–16.6 IMCU/mg. The nonspecific proteolytic activity of tree shrew recombinant chymosin in relation to total bovine casein was 30 and 117% higher than that of recombinant chymosin of cow and of single-humped camel respectively. It was found that in comparison with most of the known genetically engineered chymosins, the tree shrew enzyme showed exceptionally low thermal stability. After heating at 45°C, the coagulation ability of tree shrew recombinant chymosin decreased by more than 40%, and at 50°C the enzyme lost more than 90% of the initial milk-clotting activity. The Michaelis constant (Km), enzyme turnover number (kcat), and catalytic efficiency (kcat/Km) for genetically engineered chymosin from the tree shrew were 6.3 ± 0.1 µM, 11 927 ± 3169 s–1 and 1968 ± 620 µM–1 s–1, respectively. Comparative analysis showed that the primary structure of the chymosin-sensitive site of cow kappa-casein and the supposed similar sequence of tree shrew kappa-casein differed by 75%. The ability of tree shrew recombinant chymosin to coagulate cow’s milk, along with a low thermal stability and high catalytic efficiency with respect to the substrate, imitating the chymosin-sensitive site of cow kappa-casein, suggests that this enzyme is of potential interest for cheese making.
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Balabova DV, Rudometov AP, Belenkaya SV, Belov AN, Koval AD, Bondar AA, Bakulina AY, Rukhlova EA, Elchaninov VV, Shcherbakov DN. Biochemical and technological properties of moose (<i>Alces alces</i>) recombinant chymosin. Vavilovskii Zhurnal Genet Selektsii 2022; 26:240-249. [PMID: 35774365 PMCID: PMC9167822 DOI: 10.18699/vjgb-22-31] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 02/19/2022] [Accepted: 03/03/2022] [Indexed: 11/19/2022] Open
Abstract
Recombinant chymosins (rСhns) of the cow and the camel are currently considered as standard milk coagulants for cheese-making. The search for a new type of milk-clotting enzymes that may exist in nature and can surpass the existing “cheese-making” standards is an urgent biotechnological task. Within this study, we for the first time constructed an expression vector allowing production of a recombinant analog of moose chymosin in the expression system of Escherichia coli (strain SHuffle express). We built a model of the spatial structure of moose chymosin and compared the topography of positive and negative surface charges with the correspondent structures of cow and camel chymosins. We found that the distribution of charges on the surface of moose chymosin has common features with that of cow and camel chymosins. However, the moose enzyme carries a unique positively charged patch, which is likely to affect its interaction with the substrate. Biochemical and technological properties of the moose rChn were studied. Commercial rСhns of cow and camel were used as comparison enzymes. In some technological parameters, the moose rChn proved to be superior to the reference enzymes. Сompared with the cow and camel rСhns, the moose chymosin specific activity is less dependent on the changes in CaCl2 concentration in the range of 1–5 mM and pH in the range of 6–7, which is an attractive technological property. The total proteolytic activity of the moose rСhn occupies an intermediate position between the rСhns of cow and camel. The combination of biochemical and technological properties of the moose rСhn argues for further study of this enzyme.
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Affiliation(s)
| | - A. P. Rudometov
- State Research Center of Virology and Biotechnology “Vector”
| | - S. V. Belenkaya
- Altai State University; State Research Center of Virology and Biotechnology “Vector”; Novosibirsk State University
| | - A. N. Belov
- Federal Altai Scientific Center for Agrobiotechnology, Siberian Research Institute of Cheese-Making
| | - A. D. Koval
- Federal Altai Scientific Center for Agrobiotechnology, Siberian Research Institute of Cheese-Making
| | - A. A. Bondar
- Institute of Chemical Biology and Fundamental Medicine of the Siberian Branch of the Russian Academy of Sciences
| | - A. Yu. Bakulina
- State Research Center of Virology and Biotechnology “Vector”; Novosibirsk State University
| | - E. A. Rukhlova
- State Research Center of Virology and Biotechnology “Vector”
| | - V. V. Elchaninov
- Federal Altai Scientific Center for Agrobiotechnology, Siberian Research Institute of Cheese-Making
| | - D. N. Shcherbakov
- Altai State University; State Research Center of Virology and Biotechnology “Vector”
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