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Hesami M, Pepe M, de Ronne M, Yoosefzadeh-Najafabadi M, Adamek K, Torkamaneh D, Jones AMP. Transcriptomic Profiling of Embryogenic and Non-Embryogenic Callus Provides New Insight into the Nature of Recalcitrance in Cannabis. Int J Mol Sci 2023; 24:14625. [PMID: 37834075 PMCID: PMC10572465 DOI: 10.3390/ijms241914625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 09/14/2023] [Accepted: 09/22/2023] [Indexed: 10/15/2023] Open
Abstract
Differential gene expression profiles of various cannabis calli including non-embryogenic and embryogenic (i.e., rooty and embryonic callus) were examined in this study to enhance our understanding of callus development in cannabis and facilitate the development of improved strategies for plant regeneration and biotechnological applications in this economically valuable crop. A total of 6118 genes displayed significant differential expression, with 1850 genes downregulated and 1873 genes upregulated in embryogenic callus compared to non-embryogenic callus. Notably, 196 phytohormone-related genes exhibited distinctly different expression patterns in the calli types, highlighting the crucial role of plant growth regulator (PGRs) signaling in callus development. Furthermore, 42 classes of transcription factors demonstrated differential expressions among the callus types, suggesting their involvement in the regulation of callus development. The evaluation of epigenetic-related genes revealed the differential expression of 247 genes in all callus types. Notably, histone deacetylases, chromatin remodeling factors, and EMBRYONIC FLOWER 2 emerged as key epigenetic-related genes, displaying upregulation in embryogenic calli compared to non-embryogenic calli. Their upregulation correlated with the repression of embryogenesis-related genes, including LEC2, AGL15, and BBM, presumably inhibiting the transition from embryogenic callus to somatic embryogenesis. These findings underscore the significance of epigenetic regulation in determining the developmental fate of cannabis callus. Generally, our results provide comprehensive insights into gene expression dynamics and molecular mechanisms underlying the development of diverse cannabis calli. The observed repression of auxin-dependent pathway-related genes may contribute to the recalcitrant nature of cannabis, shedding light on the challenges associated with efficient cannabis tissue culture and regeneration protocols.
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Affiliation(s)
- Mohsen Hesami
- Department of Plant Agriculture, University of Guelph, Guelph, ON N1G 2W1, Canada; (M.H.)
| | - Marco Pepe
- Department of Plant Agriculture, University of Guelph, Guelph, ON N1G 2W1, Canada; (M.H.)
| | - Maxime de Ronne
- Département de Phytologie, Université Laval, Quebec, QC G1V 0A6, Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Quebec, QC G1V 0A6, Canada
- Centre de Recherche et d’innovation sur les Végétaux (CRIV), Université Laval, Quebec, QC G1V 0A6, Canada
| | | | - Kristian Adamek
- Department of Plant Agriculture, University of Guelph, Guelph, ON N1G 2W1, Canada; (M.H.)
| | - Davoud Torkamaneh
- Département de Phytologie, Université Laval, Quebec, QC G1V 0A6, Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Quebec, QC G1V 0A6, Canada
- Centre de Recherche et d’innovation sur les Végétaux (CRIV), Université Laval, Quebec, QC G1V 0A6, Canada
- Institut Intelligence et Données (IID), Université Laval, Quebec, QC G1V 0A6, Canada
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Sahara A, Roberdi R, Wiendi NMA, Liwang T. Transcriptome profiling of high and low somatic embryogenesis rate of oil palm ( Elaeis guineensis Jacq. var. Tenera). FRONTIERS IN PLANT SCIENCE 2023; 14:1142868. [PMID: 37251752 PMCID: PMC10213556 DOI: 10.3389/fpls.2023.1142868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 04/20/2023] [Indexed: 05/31/2023]
Abstract
Oil palm micropropagation through tissue culture is a technique to provide elite oil palms to meet the desired traits. This technique is commonly carried out through somatic embryogenesis. However, the oil palm's somatic embryogenesis rate is quite low. Several approaches have been made to overcome this problem, including transcriptome profiling through RNA-seq to identify key genes involved in oil palm somatic embryogenesis. RNA sequencing was applied in high- and low-embryogenic ortets of Tenera varieties based on the somatic embryoid rate at the callus, globular, scutellar, and coleoptilar embryoid stages. Cellular analysis of embryoid inductions and proliferations showed that high-embryogenic ortets resulted in higher embryoid proliferation and germinations than low-embryogenic ortets. Transcriptome profiling showed that there are a total of 1,911 differentially expressed genes (DEGs) between high- and low-embryogenic ortets. ABA signaling-related genes such as LEA, DDX28, and vicilin-like protein are upregulated in high-embryogenic ortets. Furthermore, DEGs associated with other hormone signaling, such as HD-ZIP associated with brassinosteroids and NPF associated with auxin, are upregulated in high-embryogenic ortets. This result suggests a physiological difference between high- and low-embryogenic ortets that is connected to their capacity for somatic embryogenesis. These DEGs will be used as potential biomarkers for high-embryogenic ortets and will be validated in further studies.
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Affiliation(s)
- Asri Sahara
- Biotechnology Department, Plant Production and Biotechnology Division, PT SMART Tbk, Bogor, Indonesia
| | - Roberdi Roberdi
- Biotechnology Department, Plant Production and Biotechnology Division, PT SMART Tbk, Bogor, Indonesia
| | - Ni Made Armini Wiendi
- Agronomy and Horticulture Department, Agriculture Faculty, Bogor Agricultural University, Bogor, Indonesia
| | - Tony Liwang
- Biotechnology Department, Plant Production and Biotechnology Division, PT SMART Tbk, Bogor, Indonesia
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Peng C, Gao F, Wang H, Tretyakova IN, Nosov AM, Shen H, Yang L. Morphological and Physiological Indicators for Screening Cell Lines with High Potential for Somatic Embryo Maturation at an Early Stage of Somatic Embryogenesis in Pinus Koraiensis. PLANTS 2022; 11:plants11141867. [PMID: 35890500 PMCID: PMC9316463 DOI: 10.3390/plants11141867] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 07/02/2022] [Accepted: 07/05/2022] [Indexed: 11/18/2022]
Abstract
Many cell lines in the embryogenic callus cannot produce somatic embryos (SEs) even if they meet the optimal SE maturation culture conditions during conifer somatic embryogenesis. This phenomenon hinders the progress of the industrial-scale reproduction of conifers. Therefore, there is an urgent need to obtain morphological and physiological markers to screen embryogenic calli in response to SE maturation conditions. To detect cell lines with high somatic embryogenesis potential during the proliferation process, we counted the number of pro-embryos and early SEs (ESEs) in different cell lines and storage substances, endogenous hormones, and polyamine contents. The results showed that the yield of P. koraiensis SEs was heavily dependent on genotype (p = 0.001). There were high levels of PE III (pro-embryo III) number, ESE number, and soluble protein content, in the response cell lines (R cell lines), which were 1.6-, 3-, and 1.1-fold those of the obstructive cell lines (B cell lines), respectively. The B cell line had high levels of starch, auxin (IAA), Put, Spd, and putrescine: spermine (Put: Spm) compared to the R cell line. In addition, the numbers of PE III, ESEs, and soluble protein content were significantly positively correlated with SE yield. In contrast, the contents of starch, abscisic acid (ABA), Put, Spm, and Spd were significantly negatively correlated with SE yield. To ensure the accuracy of the results, we used nine cell lines to test the results. The PE III and ESE numbers and the Spm and Spd contents were positively correlated with SE yield, while the levels of starch, ABA, IAA, Put: Spd, and Put: Spm were negatively correlated with SE yield. Thus, we recommend using high PE III and ESEs as morphological indicators and low levels of starch, IAA, ABA, and Put: Spm as physiological markers to screen cell lines with a high somatic embryogenesis potential. In addition, we also found that the relationship between Spd, Spm, and SE yield was opposite in the two experimental results. Therefore, we speculate that the differences in Spd and Spm content are mainly affected by genotype. In conclusion, this study obtained the morphological and physiological markers of some high-somatic embryogenic cell lines by comparing the differences between nine somatic embryogenic cell lines. Our results can guide the improvement of conifer somatic embryogenesis technology and can provide a theoretical basis for accelerating the application of biotechnology in large-scale artificial breeding.
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Affiliation(s)
- Chunxue Peng
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China; (C.P.); (F.G.); (H.W.)
- State Forestry and Grassland Administration Engineering Technology Research Center of Korean Pine, Harbin 150040, China
| | - Fang Gao
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China; (C.P.); (F.G.); (H.W.)
- State Forestry and Grassland Administration Engineering Technology Research Center of Korean Pine, Harbin 150040, China
| | - Hao Wang
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China; (C.P.); (F.G.); (H.W.)
- State Forestry and Grassland Administration Engineering Technology Research Center of Korean Pine, Harbin 150040, China
| | - Iraida Nikolaevna Tretyakova
- Laboratory of Forest Genetics and Breeding, Institution of the Russian Academy of Sciences, V.N. Sukachev Institute of Forest Siberian Branch of RAS, 660036 Krasnoyarsk, Russia;
| | - Alexander Mikhaylovich Nosov
- Department of Cell Biology, Institute of Plant Physiology, K.A. Timiryazev Russian Academy of Sciences, 127276 Moscow, Russia;
- Department of Plant Physiology, Biological Faculty, Lomonosov Moscow State University, 119991 Moscow, Russia
| | - Hailong Shen
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China; (C.P.); (F.G.); (H.W.)
- State Forestry and Grassland Administration Engineering Technology Research Center of Korean Pine, Harbin 150040, China
- Correspondence: (H.S.); (L.Y.); Tel.: +86-0451-821-915-0918 (L.Y.)
| | - Ling Yang
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China; (C.P.); (F.G.); (H.W.)
- State Forestry and Grassland Administration Engineering Technology Research Center of Korean Pine, Harbin 150040, China
- Correspondence: (H.S.); (L.Y.); Tel.: +86-0451-821-915-0918 (L.Y.)
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Atanacio-López R, Luna-Rodríguez M, Soto-Contreras A, Rojas-Avelizapa LI, Sánchez-Coello NG, Mora-Collado N, Núñez-Pastrana R. Inorganic Compounds that Aid in Obtaining Somatic Embryos. Methods Mol Biol 2022; 2527:203-221. [PMID: 35951193 DOI: 10.1007/978-1-0716-2485-2_15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Somatic embryogenesis (SE) is a process that allows formation of embryos from somatic cells; this biological process has different stages that first require micropropagation and conditioning of explant, and then induction, multiplication, development, and germination of somatic embryos (SoE), to obtain seedlings that will be acclimatized and grown in a greenhouse to further be cultivated in the field. Inorganic compounds are supplemented by macro- and micronutrients that can conform different culture media, and with other compounds such as a carbon source, vitamins, and plant growth regulators (PGRs), will direct the fate of the plant cells to obtain SoE that will regenerate into plants. The concentration of these inorganic compounds must be optimized, since at very high concentrations they can cause toxicity and at low concentrations they may not induce the desired response. The objective of this chapter is to describe the most significant advances in the use of inorganic elements during the different stages of SE, starting with the description of the most used basal media and later describing the use of the main studied mineral elements during establishment of SE.
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Affiliation(s)
- Rodrigo Atanacio-López
- Posgrado en Ciencias Agropecuarias, Facultad de Ciencias Agrícolas, Universidad Veracruzana, Xalapa, Veracruz, Mexico
| | - Mauricio Luna-Rodríguez
- Posgrado en Ciencias Agropecuarias, Facultad de Ciencias Agrícolas, Universidad Veracruzana, Xalapa, Veracruz, Mexico
| | - Anell Soto-Contreras
- Facultad de Ciencias Biológicas y Agropecuarias, Universidad Veracruzana, Amatlán de los Reyes, Veracruz, Mexico
| | - Luz I Rojas-Avelizapa
- Facultad de Ciencias Biológicas y Agropecuarias, Universidad Veracruzana, Amatlán de los Reyes, Veracruz, Mexico
| | - Nadia G Sánchez-Coello
- Posgrado en Ciencias Agropecuarias, Facultad de Ciencias Agrícolas, Universidad Veracruzana, Xalapa, Veracruz, Mexico
| | - Norma Mora-Collado
- Facultad de Ciencias Biológicas y Agropecuarias, Universidad Veracruzana, Amatlán de los Reyes, Veracruz, Mexico
| | - Rosalía Núñez-Pastrana
- Facultad de Ciencias Biológicas y Agropecuarias, Universidad Veracruzana, Amatlán de los Reyes, Veracruz, Mexico.
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Kruglova NN, Titova GE, Seldimirova OA, Zinatullina AE. Cytophysiological Features of the Cereal-Based Experimental System “Embryo In Vivo–Callus In Vitro”. Russ J Dev Biol 2021. [DOI: 10.1134/s1062360421040044] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Kruglova NN, Titova GE, Seldimirova OA, Zinatullina AE, Veselov DS. Embryo of Flowering Plants at the Critical Stage of Embryogenesis Relative Autonomy (by Example of Cereals). Russ J Dev Biol 2020. [DOI: 10.1134/s1062360420010026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Yegorova N, Kruglova N, Galin I, Stavtzeva I. Induction of morphogenesis in the callus culture of Lavandula angustifolia Mill. BIO WEB OF CONFERENCES 2020. [DOI: 10.1051/bioconf/20202400098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The influence of the nutrient medium hormonal composition on the induction of calluso- and morphogenesis in Lavandula angustifolia Mill., as well as the content of some endogenous hormones (indolylacetic acid, cytokinins, abscisic acid) in morphogenic and non-morphogenic calli, were studied. The leaf explants were isolated from obtained in vitro plants of the Stepnaya and Vdala cultivars. In primary calli with a frequency of 5.7-11.6%, buds and shoots were formed on different Murashige and Skoog (MS) culture media supplemented with 6-benzylaminopurine, thidiazuron, kinetin, and gibberellic acid. In the callus of the first passage in both cultivars, the induction of morphogenesis was observed with the greatest frequency (39.5-43.2%) on the MS medium with the addition of 1.0 mg/l 6-benzylaminopurine and 1.0 mg/l kinetin. Morphogenic calli of the Vdala cultivar were characterized by a higher content of cytokinins, but a lower content of indolylacetic and abscisic acids compared with non-morphogenic ones.
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