1
|
Sale S, Subramaniam S, Mad’ Atari MF. Trends in the Tissue Culture Techniques and the Synthesis of Bioactive Compounds in Eurycoma longifolia Jack-Current Status and Future Perspectives. PLANTS (BASEL, SWITZERLAND) 2023; 13:107. [PMID: 38202415 PMCID: PMC10780575 DOI: 10.3390/plants13010107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 12/20/2023] [Accepted: 12/20/2023] [Indexed: 01/12/2024]
Abstract
Over the last two decades, there has been a concerted effort by researchers to mass propagate Eurycoma longifolia and improve the yield of its very important and sought-after anti-cancer and aphrodisiac bioactive compounds. To achieve this, various techniques have been used to mass propagate and improve the yield of these bioactive compounds in tissue cultures. These techniques include the optimization of media conditions and application of various types and combinations of plant growth regulators (PGRs). In addition, some elicitation techniques have been used to improve the synthesis of these bioactive compounds. However, in comparison with other herbal species with similar economic importance, many techniques have not been applied to E. longifolia. Adopting the most recent methodologies would ensure efficiency and sustainability in the in vitro production of bioactive compounds in E. longifolia. Therefore, in this review, we present an up-to-date record on the success stories in the tissue culture techniques and synthesis of bioactive compounds. In addition, we attempted to identify some of the missing links on the road to the effective and sustainable biotechnological utilization of this super important biological resource.
Collapse
Affiliation(s)
- Sani Sale
- School of Biological Sciences, Universiti Sains Malaysia (USM), Georgetown 11800, Penang, Malaysia
- Department of Botany, Gombe State University, P.M.B 127, Gombe 760214, Nigeria
| | - Sreeramanan Subramaniam
- School of Biological Sciences, Universiti Sains Malaysia (USM), Georgetown 11800, Penang, Malaysia
- Centre for Chemical Biology (CCB), Universiti Sains Malaysia (USM), Bayan Lepas 11900, Penang, Malaysia
- Department of Biology, Faculty of Science and Technology Universitas Airlangga, Surabaya 60115, Indonesia
| | | |
Collapse
|
2
|
Türkoğlu A, Haliloğlu K, Demirel F, Aydin M, Çiçek S, Yiğider E, Demirel S, Piekutowska M, Szulc P, Niedbała G. Machine Learning Analysis of the Impact of Silver Nitrate and Silver Nanoparticles on Wheat ( Triticum aestivum L.): Callus Induction, Plant Regeneration, and DNA Methylation. PLANTS (BASEL, SWITZERLAND) 2023; 12:4151. [PMID: 38140479 PMCID: PMC10747064 DOI: 10.3390/plants12244151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 11/28/2023] [Accepted: 11/29/2023] [Indexed: 12/24/2023]
Abstract
The objective of this study was to comprehend the efficiency of wheat regeneration, callus induction, and DNA methylation through the application of mathematical frameworks and artificial intelligence (AI)-based models. This research aimed to explore the impact of treatments with AgNO3 and Ag-NPs on various parameters. The study specifically concentrated on analyzing RAPD profiles and modeling regeneration parameters. The treatments and molecular findings served as input variables in the modeling process. It included the use of AgNO3 and Ag-NPs at different concentrations (0, 2, 4, 6, and 8 mg L-1). The in vitro and epigenetic characteristics were analyzed using several machine learning (ML) methods, including support vector machine (SVM), random forest (RF), extreme gradient boosting (XGBoost), k-nearest neighbor classifier (KNN), and Gaussian processes classifier (GP) methods. This study's results revealed that the highest values for callus induction (CI%) and embryogenic callus induction (EC%) occurred at a concentration of 2 mg L-1 of Ag-NPs. Additionally, the regeneration efficiency (RE) parameter reached its peak at a concentration of 8 mg L-1 of AgNO3. Taking an epigenetic approach, AgNO3 at a concentration of 2 mg L-1 demonstrated the highest levels of genomic template stability (GTS), at 79.3%. There was a positive correlation seen between increased levels of AgNO3 and DNA hypermethylation. Conversely, elevated levels of Ag-NPs were associated with DNA hypomethylation. The models were used to estimate the relationships between the input elements, including treatments, concentration, GTS rates, and Msp I and Hpa II polymorphism, and the in vitro output parameters. The findings suggested that the XGBoost model exhibited superior performance scores for callus induction (CI), as evidenced by an R2 score of 51.5%, which explained the variances. Additionally, the RF model explained 71.9% of the total variance and showed superior efficacy in terms of EC%. Furthermore, the GP model, which provided the most robust statistics for RE, yielded an R2 value of 52.5%, signifying its ability to account for a substantial portion of the total variance present in the data. This study exemplifies the application of various machine learning models in the cultivation of mature wheat embryos under the influence of treatments and concentrations involving AgNO3 and Ag-NPs.
Collapse
Affiliation(s)
- Aras Türkoğlu
- Department of Field Crops, Faculty of Agriculture, Necmettin Erbakan University, Konya 42310, Türkiye
| | - Kamil Haliloğlu
- Department of Field Crops, Faculty of Agriculture, Ataturk University, Erzurum 25240, Türkiye;
| | - Fatih Demirel
- Department of Agricultural Biotechnology, Faculty of Agriculture, Igdır University, Igdir 76000, Türkiye;
| | - Murat Aydin
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ataturk University, Erzurum 25240, Türkiye; (M.A.); (S.Ç.); (E.Y.)
| | - Semra Çiçek
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ataturk University, Erzurum 25240, Türkiye; (M.A.); (S.Ç.); (E.Y.)
| | - Esma Yiğider
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ataturk University, Erzurum 25240, Türkiye; (M.A.); (S.Ç.); (E.Y.)
| | - Serap Demirel
- Department of Molecular Biology and Genetics, Faculty of Science, Van Yüzüncü Yıl University, Van 65080, Türkiye;
| | - Magdalena Piekutowska
- Department of Geoecology and Geoinformation, Institute of Biology and Earth Sciences, Pomeranian University in Słupsk, 27 Partyzantów St., 76-200 Słupsk, Poland;
| | - Piotr Szulc
- Department of Agronomy, Poznań University of Life Sciences, Dojazd 11, 60-632 Poznań, Poland;
| | - Gniewko Niedbała
- Department of Biosystems Engineering, Faculty of Environmental and Mechanical Engineering, Poznań University of Life Sciences, Wojska Polskiego 50, 60-627 Poznań, Poland
| |
Collapse
|
3
|
Zafar H, Javed R, Zia M. Nanotoxicity assessment in plants: an updated overview. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:93323-93344. [PMID: 37544947 DOI: 10.1007/s11356-023-29150-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Accepted: 07/30/2023] [Indexed: 08/08/2023]
Abstract
Nanotechnology is rapidly emerging and innovative interdisciplinary field of science. The application of nanomaterials in agricultural biotechnology has been exponentially increased over the years that could be attributed to their uniqueness, versatility, and flexibility. The overuse of nanomaterials makes it crucial to determine their fate and distribution in the in vitro (in cell and tissue cultures) and in vivo (in living species) biological environments by investigating the nano-biointerface. The literature states that the beneficial effects of nanoparticles come along with their adverse effects, subsequently leading to an array of short-term and long-term toxicities. It has been evident that the interplay of nanoparticles with abiotic and biotic communities produces several eco-toxicological effects, and the physiology and biochemistry of crops are greatly influenced by the metabolic alterations taking place at cellular, sub-cellular, and molecular levels. Numerous risk factors affect nanoparticle's accumulation, translocation, and associated cytogenotoxicity. This review article summarizes the contributing factors, possible mechanisms, and risk assessment of hazardous effects of various types of nanoparticles to plant health. The methods for evaluating the plant nanotoxicity parameters have been elaborated. Conclusively, few recommendations are put forward for designing safer, high-quality nanomaterials to protect and maintain environmental safety for smarter agriculture demanded by researchers and industrialists.
Collapse
Affiliation(s)
- Hira Zafar
- Department of Biotechnology, Quaid-i-Azam University, Islamabad, 45320, Pakistan
| | - Rabia Javed
- School of Science and the Environment, Grenfell Campus, Memorial University of Newfoundland and Labrador, Corner Brook, Newfoundland, A2H 5G4, Canada.
| | - Muhammad Zia
- Department of Biotechnology, Quaid-i-Azam University, Islamabad, 45320, Pakistan
| |
Collapse
|
4
|
Tarrahi R, Mahjouri S, Khataee A. A review on in vivo and in vitro nanotoxicological studies in plants: A headlight for future targets. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 208:111697. [PMID: 33396028 DOI: 10.1016/j.ecoenv.2020.111697] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Revised: 11/01/2020] [Accepted: 11/18/2020] [Indexed: 06/12/2023]
Abstract
Owing to the unique properties and useful applications in numerous fields, nanomaterials (NMs) received a great attention. The mass production of NMs has raised major concern for the environment. Recently, some altered growth patterns in plants have been reported due to the plant-NMs interactions. However, for NMs safe applications in agriculture and medicine, a comprehensive understanding of bio-nano interactions is crucial. The main goal of this review article is to summarize the results of the toxicological studies that have shown the in vitro and in vivo interactions of NMs with plants. The toxicity mechanisms are briefly discussed in plants as the defense mechanism works to overcome the stress caused by NMs implications. Indeed, the impact of NMs on plants varies significantly with many factors including physicochemical properties of NMs, culture media, and plant species. To investigate the impacts, dose metrics is an important analysis for assaying toxicity and is discussed in the present article to broadly open up different aspects of nanotoxicological investigations. To access reliable quantification and measurement in laboratories, standardized methodologies are crucial for precise dose delivery of NMs to plants during exposure. Altogether, the information is significant to researchers to describe restrictions and future perspectives.
Collapse
Affiliation(s)
- Roshanak Tarrahi
- Health Promotion Research Center, Iran University of Medical Sciences, 14496-14535 Tehran, Iran
| | - Sepideh Mahjouri
- Department of Biological Sciences, Faculty of Basic Sciences, Higher Education Institute of Rab-Rashid, Tabriz, Iran
| | - Alireza Khataee
- Research Laboratory of Advanced Water and Wastewater Treatment Processes, Department of Applied Chemistry, Faculty of Chemistry, University of Tabriz, 51666-16471 Tabriz, Iran; Рeoples' Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya Street, Moscow 117198, Russian Federation.
| |
Collapse
|
5
|
Chumakov DS, Sokolov AO, Bogatyrev VA, Sokolov OI, Selivanov NY, Dykman LA. Green Synthesis of Gold Nanoparticles using Arabidopsis thaliana and Dunaliella salina Cell Cultures. ACTA ACUST UNITED AC 2019. [DOI: 10.1134/s1995078018050038] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
6
|
Maqbool Q. Green-synthesised cerium oxide nanostructures (CeO2-NS) show excellent biocompatibility for phyto-cultures as compared to silver nanostructures (Ag-NS). RSC Adv 2017. [DOI: 10.1039/c7ra12082f] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
The use of nanostructures (NS) in plant tissue culture can be beneficial only if we have their complete bio-safety and biocompatibility profile.
Collapse
Affiliation(s)
- Qaisar Maqbool
- National Institute of Vacuum Science and Technology (NINVAST)
- Islamabad
- Pakistan
- Department of Biotechnology
- Virtual University of Pakistan
| |
Collapse
|