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Milián-García Y, Pyne C, Lindsay K, Romero A, Hanner RH. Unveiling invasive insect threats to plant biodiversity: Leveraging eDNA metabarcoding and saturated salt trap solutions for biosurveillance. PLoS One 2023; 18:e0290036. [PMID: 37566591 PMCID: PMC10420381 DOI: 10.1371/journal.pone.0290036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 07/31/2023] [Indexed: 08/13/2023] Open
Abstract
The negative global impacts of invasive alien species (IAS) on biodiversity are second only to habitat loss. eDNA metabarcoding allows for a faster and more comprehensive evaluation of community species composition, with a higher taxonomic resolution and less taxonomic expertise required than traditional morphological-based biosurveillance. These advantages have positioned eDNA metabarcoding as the standard method for molecular-based detection of invasive alien species, where fast and accurate detectability allows prompt responses to mitigate their adverse effects. Here, eDNA metabarcoding is used for biosurveillance of invasive alien species regulated by Canada in high-risk areas with four main objectives: i) validate the effectiveness of eDNA metabarcoding of salt trap solutions as a molecular technique for IAS detection, ii) compare detection from DNA extracts obtained from filter quarters versus whole filters, iii) benchmark two different bioinformatic pipelines (MetaWorks and mBRAVE), and iv) compare canopy and ground level trapping. eDNA from up to five IAS (Agrilus planipennis, Daktulosphaira vitifoliae, Lymantria dispar, Popillia japonica, and Trichoferus campestris) were successfully detected across years from 2017 to 2022 in southern Ontario, Canada, with successful morphological validation for all except Lymantria dispar and Trichoferus campestris. Analysis of filter quarters in contrast to whole filters was demonstrated to be insufficient for effective IAS detection in each sample. All IAS were detected in only one filter quarter, suggesting a patchy eDNA distribution on the filter. The MetaWorks and mBRAVE bioinformatics pipelines proved effective in identifying IAS, with MetaWorks yielding a higher success rate when comparing molecular and morphological identifications. Ground-level and canopy-level sampling showed differential IAS recovery rates based on the molecular detection, which also varied per collection year, with all found IAS detected at the canopy level in 2022 while only one (Lymantria dispar) in 2020. The present study ratifies the efficacy and importance of eDNA-based detection in a regulatory context and the utility of adding eDNA metabarcoding of saturated salt trap solutions, a critical tool for IAS detection.
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Affiliation(s)
- Yoamel Milián-García
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
- Ecological and Regulatory (Ecoreg) Solutions Inc., Guelph, Guelph, Ontario, Canada
| | - Cassandre Pyne
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Kate Lindsay
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Adriana Romero
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Robert H. Hanner
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
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Ahmed DA, Haubrock PJ, Cuthbert RN, Bang A, Soto I, Balzani P, Tarkan AS, Macêdo RL, Carneiro L, Bodey TW, Oficialdegui FJ, Courtois P, Kourantidou M, Angulo E, Heringer G, Renault D, Turbelin AJ, Hudgins EJ, Liu C, Gojery SA, Arbieu U, Diagne C, Leroy B, Briski E, Bradshaw CJA, Courchamp F. Recent advances in availability and synthesis of the economic costs of biological invasions. Bioscience 2023; 73:560-574. [PMID: 37680688 PMCID: PMC10481418 DOI: 10.1093/biosci/biad060] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 05/18/2023] [Accepted: 06/14/2023] [Indexed: 09/09/2023] Open
Abstract
Biological invasions are a global challenge that has received insufficient attention. Recently available cost syntheses have provided policy- and decision makers with reliable and up-to-date information on the economic impacts of biological invasions, aiming to motivate effective management. The resultant InvaCost database is now publicly and freely accessible and enables rapid extraction of monetary cost information. This has facilitated knowledge sharing, developed a more integrated and multidisciplinary network of researchers, and forged multidisciplinary collaborations among diverse organizations and stakeholders. Over 50 scientific publications so far have used the database and have provided detailed assessments of invasion costs across geographic, taxonomic, and spatiotemporal scales. These studies have provided important information that can guide future policy and legislative decisions on the management of biological invasions while simultaneously attracting public and media attention. We provide an overview of the improved availability, reliability, standardization, and defragmentation of monetary costs; discuss how this has enhanced invasion science as a discipline; and outline directions for future development.
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Affiliation(s)
- Danish A Ahmed
- Center for Applied Mathematics and Bioinformatics, Department of Mathematics and Natural Sciences, Gulf University for Science and Technology, Hawally, Kuwait
| | - Phillip J Haubrock
- Center for Applied Mathematics and Bioinformatics, Department of Mathematics and Natural Sciences, Gulf University for Science and Technology, Hawally, Kuwait
- Department of River Ecology and Conservation, Senckenberg Research Institute and Natural History Museum Frankfurt,Gelnhausen, Germany
- South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Faculty of Fisheries and Protection of Waters, University of South Bohemia in České Budějovice, Vodňany, Czech Republic
| | - Ross N Cuthbert
- Institute for Global Food Security, School of Biological Sciences at Queen's University Belfast, Belfast, NorthernIreland
| | - Alok Bang
- School of Arts and Sciences at Azim Premji University, Bangalore, India
- School of Arts and Sciences, Azim Premji University, Bhopal, India
- Society for Ecology, Evolution, and Development, Wardha, India
| | - Ismael Soto
- South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Faculty of Fisheries and Protection of Waters, University of South Bohemia in České Budějovice, Vodňany, Czech Republic
| | - Paride Balzani
- South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Faculty of Fisheries and Protection of Waters, University of South Bohemia in České Budějovice, Vodňany, Czech Republic
| | - Ali Serhan Tarkan
- Department of Basic Sciences in the Faculty of Fisheries at Muğla Sıtkı Koçman University, in Muğla, Turkey
- Department of Life and Environmental Sciences in the Faculty of Science and Technology at Bournemouth University, Poole, Dorset, England, United Kingdom
| | - Rafael L Macêdo
- Graduate Program in Conservation and Ecotourism at the Federal University of Rio de Janeiro State, Rio de Janeiro, Rio de Janeiro State, Brazil
- Institute of Biology at Freie Universität Berlin, Berlin, Germany
- Neotropical Limnology Group, at the Federal University of Rio de Janeiro State, Rio de Janeiro, Rio de Janeiro State, Brasil
| | - Laís Carneiro
- Laboratório de Ecologia e Conservação in the Departamento de Engenharia Ambiental, Setor de Tecnologia, at the Universidade Federal do Paraná, in Curitiba, Paraná, Brazil
| | - Thomas W Bodey
- School of Biological Sciences at King's College, University of Aberdeen, Aberdeen, Scotland, United Kingdom
| | - Francisco J Oficialdegui
- South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Faculty of Fisheries and Protection of Waters, University of South Bohemia in České Budějovice, Vodňany, Czech Republic
| | - Pierre Courtois
- Centre for Environmental Economics—Montpellier, National Institute for Research in Agriculture and the Environment, Montpellier, France
| | - Melina Kourantidou
- Department of Sociology, Environmental and Business Economics, University of Southern Denmark, Esbjerg Ø, Denmark
- Université de Bretagne Occidentale, Plouzané, France
| | | | - Gustavo Heringer
- Departamento de Ecologia e Conservação in the Instituto de Ciências Naturais at the Universidade Federal de Lavras, Lavras, Minas Gerais, Brazil
- Nürtingen-Geislingen University, Nürtingen, Germany
| | - David Renault
- Centre National de Recherche Scientifique's Ecosystèmes, Biodiversité, Evolution, University of Rennes, Rennes, France
| | - Anna J Turbelin
- Université Paris–Saclay, CNRS, AgroParisTech, Ecologie Systématique Evolution, Gif-sur-Yvette, France
- Great Lakes Forestry Centre at Canadian Forestry Services, part of Natural Resources Canada, Sault Ste Marie, Ontario, Canada
| | - Emma J Hudgins
- Department of Biology at Carleton University, Ottawa, Ontario, Canada
| | - Chunlong Liu
- College of Fisheries at the Ocean University of China, Qingdao, China
- Institute of Hydrobiology at the Chinese Academy of Sciences, Wuhan, China
| | - Showkat A Gojery
- Department of Botany at the University of Kashmir, Kashmir, India
| | - Ugo Arbieu
- Université Paris–Saclay, CNRS, AgroParisTech, Ecologie Systématique Evolution, Gif-sur-Yvette, France
- Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany
- Smithsonian Conservation Biology Institute, at the National Zoological Park, Front Royal, Virginia, United States
| | - Christophe Diagne
- Centre de Biologie pour la Gestion des Populations, at Institut de Recherche pour le Développement, Montferrier-sur-Lez Cedex, France
| | - Boris Leroy
- Unité Biologie des Organismes et des Ecosystèmes Aquatiques, Muséum National d’Histoire Naturelle, Sorbonne Universités, Université de Caen Normandie, Université des Antilles, in Paris, France
| | | | - Corey J A Bradshaw
- Global Ecology Laboratory, Partuyarta Ngadluku Wardli Kuu, College of Science and Engineering, Flinders University, Adelaide, South Australia
- ARC Centre of Excellence for Australian Biodiversity and Heritage, Wollongong, New South Wales, Australia
| | - Franck Courchamp
- Université Paris–Saclay, CNRS, AgroParisTech, Ecologie Systématique Evolution, Gif-sur-Yvette, France
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Nahrung HF, Liebhold AM, Brockerhoff EG, Rassati D. Forest Insect Biosecurity: Processes, Patterns, Predictions, Pitfalls. ANNUAL REVIEW OF ENTOMOLOGY 2023; 68:211-229. [PMID: 36198403 DOI: 10.1146/annurev-ento-120220-010854] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
The economic and environmental threats posed by non-native forest insects are ever increasing with the continuing globalization of trade and travel; thus, the need for mitigation through effective biosecurity is greater than ever. However, despite decades of research and implementation of preborder, border, and postborder preventative measures, insect invasions continue to occur, with no evidence of saturation, and are even predicted to accelerate. In this article, we review biosecurity measures used to mitigate the arrival, establishment, spread, and impacts of non-native forest insects and possible impediments to the successful implementation of these measures. Biosecurity successes are likely under-recognized because they are difficult to detect and quantify, whereas failures are more evident in the continued establishment of additional non-native species. There are limitations in existing biosecurity systems at global and country scales (for example, inspecting all imports is impossible, no phytosanitary measures are perfect, knownunknowns cannot be regulated against, and noncompliance is an ongoing problem). Biosecurity should be a shared responsibility across countries, governments, stakeholders, and individuals.
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Affiliation(s)
- Helen F Nahrung
- Forest Research Institute, University of the Sunshine Coast, Sippy Downs, Queensland, Australia;
| | - Andrew M Liebhold
- US Forest Service Northern Research Station, Morgantown, West Virginia, USA;
- Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Czech Republic
| | - Eckehard G Brockerhoff
- Forest Health and Biotic Interactions, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland;
| | - Davide Rassati
- Department of Agronomy, Food, Natural Resources, Animals and the Environment, University of Padova, Italy;
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