Genomic heterozygosity is associated with parasite abundance, but the effects are not mediated by host condition

Whether, when, and how genetic diversity buffers individuals and populations against infectious disease risk is a critical and open question for understanding wildlife disease and zoonotic disease risk. Several, but not all, studies have found negative relationships between infection and heterozygosity in wildlife. Since they can host multiple zoonotic infections, we sampled a population of wild deer mice (Peromyscus maniculatus), sequenced their genomes, and examined their fecal samples for coccidia and nematode eggs. We analyzed coccidia infection status, abundance, and coinfection status in relation to per-locus and per-individual measures of heterozygosity, as well as identified SNPs associated with infection status. Since heterozygosity might affect host condition, and condition is known to affect immunity, it was included as a co-variate in the per-individual analyses and as response variable in relation to heterozygosity. Not only did coccidia-infected individuals have lower levels of genome-wide per-locus diversity across all metrics, but we found an inverse relationship between genomic diversity and severity of coccidia infection. We also found weaker evidence that coinfected individuals had lower levels of private allelic variation than all other groups. In the per-individual analyses, relationships between heterozygosity and infection were marginal but followed the same negative trends. Condition was negatively correlated with infection, but was not associated with heterozygosity, suggesting that effects of heterozygosity on infection were not mediated by host condition in this system. Association tests identified multiple loci involved in the inflammatory response, with a particular role for NF-κB signaling, supporting previous work on the genetic basis of coccidia resistance. Taken together, we find that increased genome-wide neutral diversity, the presence of specific genetic variants, and improved condition positively impact infection status. Our results underscore the importance of considering host genomic variation as a buffer against infection, especially in systems that can harbor zoonotic diseases.

Supplementary Information

The online version contains supplementary material available at 10.1007/s10682-022-10175-8.

Is species richness driving intra- and interspecific interactions and temporal activity overlap of a hantavirus host? An experimental test

High species diversity of the potential animal host community for a zoonotic pathogen may reduce pathogen transmission among the most competent host, a phenomenon called the “dilution effect”, but the mechanisms driving this effect have been little studied. One proposed mechanism is “encounter reduction” where host species of low-competency decrease contact rates between infected and susceptible competent hosts, especially in directly transmitted diseases. We conducted an experiment in outdoor enclosures in northwestern Mexico where we manipulated rodent assemblages to assess the effect of species richness on the frequency of intra- and interspecific interactions and activity patterns of a hantavirus reservoir host (North American deermouse; Peromyscus maniculatus). Trials consisted of three treatments of rodent assemblages that differed in species richness, but had equal abundance of deermice; treatment 1 consisted of only deermice, treatment 2 included deermice and one non-competent host species, and treatment 3 included two non-competent host species in addition to deermice. To measure interactions and temporal activity, we strategically deployed foraging stations and infrared cameras. We did not find differences in the frequency of intraspecific interactions of deermice among treatments, but there were significantly more interspecific interactions between deermouse and non-competent hosts in treatment 2 than treatment 3, which is explained by the identity of the non-competent host species. In addition, there were differences in activity patterns between rodent species, and also between deermice from treatment 1 and treatment 2. These results indicate that at least at a small-scale analysis, the co-occurrence with other species in the study area does not influence the frequency of intraspecific interactions of deermice, and that deermice may be changing their activity patterns to avoid a particular non-competent host species (Dipodomys merriami). In conclusion, in this deermouse-hantavirus system a potential dilution effect would not be through intraspecific encounter reduction in the most competent hantavirus host. To identify variables of host assemblages that can influence pathogen transmission, we highlight the need to address the identity of species and the composition of assemblages, not only host species richness or diversity.

Morphological plasticity varies with duration of infection: evidence from lactating and virgin wild-derived house mice (Mus musculus) infected with an intestinal parasite (Heligmosomoides polygyrus; Nematoda)

With chronic parasite infection, host response to the parasite may change throughout the duration of the infection as the host progresses from the acute to the chronic phase. We investigated the effects of parasite infection ranging in duration from 30 to 120 days on host morphology both alone and in combination with lactation by using captive wild-derived house mice (Mus musculus) experimentally infected with a naturally occurring intestinal nematode (Heligmosomoides polygyrus). We found that some changes in host morphology were greatest at 30-60 days post-infection (e.g. spleen mass) followed by a decline towards the control state whereas other morphological changes were greatest at 90-120 days post-infection (e.g. small intestine mass) after a relatively steady increase with infection duration. For all infection durations, the morphological responses to parasite infection were similar for virgin and lactating mice (except for lean body mass). After accounting for changes in body mass with lactation, lactating mice increased organs of the gastrointestinal tract as well as liver and kidney but had less body fat than virgin mice. This is the first study to demonstrate that morphological plasticity of mice parasitized by H. polygyrus varies with infection duration and that this variation is generally similar for lactating and virgin mice.

Combined effects of cold exposure and sub-lethal intestinal parasites on host morphology and physiology

Multiple, simultaneous demands elicit physiological and morphological responses that may jeopardize an animal's ability to respond to future challenges, especially when resources are limited. Laboratory mice (Mus musculus) experimentally infected with an intestinal nematode (Heligmosomoides polygyrus) and then exposed to cold showed phenotypic plasticity of morphological and physiological responses. The parasitized mice maintained a similar body mass to the unparasitized mice but had less body fat and showed changes in some organ masses, a greater resting metabolic rate (RMR) and a diminished glucose uptake capacity both at the site of infection and in regions of the small intestine not occupied by parasites. Cold-exposed mice had a greater RMR, less body fat, a greater glucose transport capacity and showed changes in organ masses compared with mice maintained at room temperature. The responses to cold exposure were not affected by parasitism for any dependent variable. The costs of having parasites during simultaneous cold exposure included decreased energy reserves and greater maintenance requirements, which may then decrease the energy available for future expenditures, such as reproduction.