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Afzal Khan MN, Hong KS. Most favorable stimulation duration in the sensorimotor cortex for fNIRS-based BCI. BIOMEDICAL OPTICS EXPRESS 2021; 12:5939-5954. [PMID: 34745714 PMCID: PMC8547991 DOI: 10.1364/boe.434936] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Revised: 08/20/2021] [Accepted: 08/23/2021] [Indexed: 05/13/2023]
Abstract
One of the primary objectives of the brain-computer interface (BCI) is to obtain a command with higher classification accuracy within the shortest possible time duration. Therefore, this study evaluates several stimulation durations to propose a duration that can yield the highest classification accuracy. Furthermore, this study aims to address the inherent delay in the hemodynamic responses (HRs) for the command generation time. To this end, HRs in the sensorimotor cortex were evaluated for the functional near-infrared spectroscopy (fNIRS)-based BCI. To evoke brain activity, right-hand-index finger poking and tapping tasks were used. In this study, six different stimulation durations (i.e., 1, 3, 5, 7, 10, and 15 s) were tested on 10 healthy male subjects. Upon stimulation, different temporal features and multiple time windows were utilized to extract temporal features. The extracted features were then classified using linear discriminant analysis. The classification results using the main HR showed that a 5 s stimulation duration could yield the highest classification accuracy, i.e., 74%, with a combination of the mean and maximum value features. However, the results were not significantly different from the classification accuracy obtained using the 15 s stimulation. To further validate the results, a classification using the initial dip was performed. The results obtained endorsed the finding with an average classification accuracy of 73.5% using the features of minimum peak and skewness in the 5 s window. The results based on classification using the initial dip for 5 s were significantly different from all other tested stimulation durations (p < 0.05) for all feature combinations. Moreover, from the visual inspection of the HRs, it is observed that the initial dip occurred as soon as the task started, but the main HR had a delay of more than 2 s. Another interesting finding is that impulsive stimulation in the sensorimotor cortex can result in the generation of a clearer initial dip phenomenon. The results reveal that the command for the fNIRS-based BCI can be generated using the 5 s stimulation duration. In conclusion, the use of the initial dip can reduce the time taken for the generation of commands and can be used to achieve a higher classification accuracy for the fNIRS-BCI within a 5 s task duration rather than relying on longer durations.
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Affiliation(s)
- M. N. Afzal Khan
- School of Mechanical Engineering, Pusan National University, Busan 46241, Republic of Korea
| | - Keum-Shik Hong
- School of Mechanical Engineering, Pusan National University, Busan 46241, Republic of Korea
- Department of Cogno-Mechatronics Engineering, Pusan National University, Busan 46241, Republic of Korea
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Baravalle R, Montani F. Heterogeneity across neural populations: Its significance for the dynamics and functions of neural circuits. Phys Rev E 2021; 103:042308. [PMID: 34005927 DOI: 10.1103/physreve.103.042308] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2020] [Accepted: 03/18/2021] [Indexed: 11/07/2022]
Abstract
Neural populations show patterns of synchronous activity, as they share common correlated inputs. Neurons in the cortex that are connected by strong synapses cause rapid firing explosions. In addition, areas that are connected by weaker synapses have a slower dynamics and they can contribute to asymmetries in the input distributions. The aim of this work is to develop a neural model to investigate how the heterogeneities in the synaptic input distributions affect different levels of organizational activity in the brain dynamics. We analytically show how small changes in the correlation inputs can cause large changes in the interactions of the outputs that lead to a phase transition, demonstrating that a simple variation in the direction of a biased skewed distribution in the neuronal inputs can generate a transition of states in the firing rate, passing from spontaneous silence ("down state") to an absolute spiking activity ("up state"). We present an exact quantification of the dynamics of the output variables, showing that when considering a biased skewed distribution in the inputs of neuronal population, the critical point is not in an asynchronous or synchronous state but rather at an intermediate value.
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Affiliation(s)
- Roman Baravalle
- Instituto de Física de La Plata (IFLP), Universidad Nacional de La Plata, CONICET CCT-La Plata (1900) La Plata, Argentina
| | - Fernando Montani
- Instituto de Física de La Plata (IFLP), Universidad Nacional de La Plata, CONICET CCT-La Plata (1900) La Plata, Argentina
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Afzal Khan MN, Raheel Bhutta M, Hong KS. Effect of stimulation duration to the existence of initial dip. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2020:390-393. [PMID: 33018010 DOI: 10.1109/embc44109.2020.9175930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
In this paper, we investigate the effect of stimulation durations on the hemodynamic responses (HRs) in the somatosensory cortex. In doing so, the relationship between stimulation duration and the initial dip is also investigated. The HRs are measured using functional near-infrared spectroscopy (fNIRS). The HR signals related to finger poking are acquired from the left somatosensory cortex. Two different stimulation durations (i.e., 1 and 5 sec) were tested in this study. From the results of the study, it is concluded that the stimulation duration of 1 sec (short stimulus) evokes initial dip in the somatosensory cortex, but it disappears as the stimulation duration gets longer. Therefore, the 1-sec stimulation duration can serve the purpose of the fNIRS-based brain-computer interface.
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Baravalle R, Montani F. Higher-Order Cumulants Drive Neuronal Activity Patterns, Inducing UP-DOWN States in Neural Populations. ENTROPY 2020; 22:e22040477. [PMID: 33286251 PMCID: PMC7516951 DOI: 10.3390/e22040477] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 04/14/2020] [Accepted: 04/16/2020] [Indexed: 11/16/2022]
Abstract
A major challenge in neuroscience is to understand the role of the higher-order correlations structure of neuronal populations. The dichotomized Gaussian model (DG) generates spike trains by means of thresholding a multivariate Gaussian random variable. The DG inputs are Gaussian distributed, and thus have no interactions beyond the second order in their inputs; however, they can induce higher-order correlations in the outputs. We propose a combination of analytical and numerical techniques to estimate higher-order, above the second, cumulants of the firing probability distributions. Our findings show that a large amount of pairwise interactions in the inputs can induce the system into two possible regimes, one with low activity (“DOWN state”) and another one with high activity (“UP state”), and the appearance of these states is due to a combination between the third- and fourth-order cumulant. This could be part of a mechanism that would help the neural code to upgrade specific information about the stimuli, motivating us to examine the behavior of the critical fluctuations through the Binder cumulant close to the critical point. We show, using the Binder cumulant, that higher-order correlations in the outputs generate a critical neural system that portrays a second-order phase transition.
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Affiliation(s)
- Roman Baravalle
- Instituto de Física de La Plata (IFLP), Universidad Nacional de La Plata, CONICET CCT-La Plata, Diagonal 113 entre 63 y 64, La Plata, Buenos Aires 1900, Argentina;
- Departamento de Física, Facultad de Ciencias Exactas, UNLP Calle 49 y 115. C.C. 67, La Plata, Buenos Aires 1900, Argentina
| | - Fernando Montani
- Instituto de Física de La Plata (IFLP), Universidad Nacional de La Plata, CONICET CCT-La Plata, Diagonal 113 entre 63 y 64, La Plata, Buenos Aires 1900, Argentina;
- Departamento de Física, Facultad de Ciencias Exactas, UNLP Calle 49 y 115. C.C. 67, La Plata, Buenos Aires 1900, Argentina
- Correspondence:
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Causal Shannon-Fisher Characterization of Motor/Imagery Movements in EEG. ENTROPY 2018; 20:e20090660. [PMID: 33265749 PMCID: PMC7513182 DOI: 10.3390/e20090660] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Revised: 08/30/2018] [Accepted: 08/30/2018] [Indexed: 11/30/2022]
Abstract
The electroencephalogram (EEG) is an electrophysiological monitoring method that allows us to glimpse the electrical activity of the brain. Neural oscillations patterns are perhaps the best salient feature of EEG as they are rhythmic activities of the brain that can be generated by interactions across neurons. Large-scale oscillations can be measured by EEG as the different oscillation patterns reflected within the different frequency bands, and can provide us with new insights into brain functions. In order to understand how information about the rhythmic activity of the brain during visuomotor/imagined cognitive tasks is encoded in the brain we precisely quantify the different features of the oscillatory patterns considering the Shannon–Fisher plane H×F. This allows us to distinguish the dynamics of rhythmic activities of the brain showing that the Beta band facilitate information transmission during visuomotor/imagined tasks.
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Wu T, Bîlbîe FD, Păun A, Pan L, Neri F. Simplified and Yet Turing Universal Spiking Neural P Systems with Communication on Request. Int J Neural Syst 2018; 28:1850013. [DOI: 10.1142/s0129065718500132] [Citation(s) in RCA: 82] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Spiking neural P systems are a class of third generation neural networks belonging to the framework of membrane computing. Spiking neural P systems with communication on request (SNQ P systems) are a type of spiking neural P system where the spikes are requested from neighboring neurons. SNQ P systems have previously been proved to be universal (computationally equivalent to Turing machines) when two types of spikes are considered. This paper studies a simplified version of SNQ P systems, i.e. SNQ P systems with one type of spike. It is proved that one type of spike is enough to guarantee the Turing universality of SNQ P systems. Theoretical results are shown in the cases of the SNQ P system used in both generating and accepting modes. Furthermore, the influence of the number of unbounded neurons (the number of spikes in a neuron is not bounded) on the computation power of SNQ P systems with one type of spike is investigated. It is found that SNQ P systems functioning as number generating devices with one type of spike and four unbounded neurons are Turing universal.
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Affiliation(s)
- Tingfang Wu
- Key Laboratory of Image Information Processing and Intelligent Control of Education Ministry of China, School of Automation, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
| | - Florin-Daniel Bîlbîe
- Department of Computer Science, Faculty of Mathematics and Computer Science, University of Bucharest, Str. Academiei Nr. 14, Sector 1, C.P. 010014, Bucharest, Romania
| | - Andrei Păun
- Department of Computer Science, Faculty of Mathematics and Computer Science, University of Bucharest, Str. Academiei Nr. 14, Sector 1, C.P. 010014, Bucharest, Romania
- Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Splaiul Independenţei, Nr. 296, Sector 6, Bucharest, Romania
| | - Linqiang Pan
- Key Laboratory of Image Information Processing and Intelligent Control of Education Ministry of China, School of Automation, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
- School of Electric and Information Engineering, Zhengzhou University of Light Industry, Zhengzhou, Henan 450002, P. R. China
| | - Ferrante Neri
- Centre for Computational Intelligence, School of Computer Science and Informatics, De Montfort University, The Gateway, Leicester LE1 9BH, UK
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Baravalle R, Rosso OA, Montani F. Rhythmic activities of the brain: Quantifying the high complexity of beta and gamma oscillations during visuomotor tasks. CHAOS (WOODBURY, N.Y.) 2018; 28:075513. [PMID: 30070505 DOI: 10.1063/1.5025187] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2018] [Accepted: 06/11/2018] [Indexed: 06/08/2023]
Abstract
Electroencephalography (EEG) signals depict the electrical activity that takes place at the surface of the brain and provide an important tool for understanding a variety of cognitive processes. The EEG is the product of synchronized activity of the brain, and variations in EEG oscillations patterns reflect the underlying changes in neuronal synchrony. Our aim is to characterize the complexity of the EEG rhythmic oscillations bands when the subjects perform a visuomotor or imagined cognitive tasks (imagined movement), providing a causal mapping of the dynamical rhythmic activities of the brain as a measure of attentional investment. We estimate the intrinsic correlational structure of the signals within the causality entropy-complexity plane H×C, where the enhanced complexity in the gamma 1, gamma 2, and beta 1 bands allows us to distinguish motor-visual memory tasks from control conditions. We identify the dynamics of the gamma 1, gamma 2, and beta 1 rhythmic oscillations within the zone of a chaotic dissipative behavior, whereas in contrast the beta 2 band shows a much higher level of entropy and a significant low level of complexity that correspond to a non-invertible cubic map. Our findings enhance the importance of the gamma band during attention in perceptual feature binding during the visuomotor/imagery tasks.
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Affiliation(s)
- Roman Baravalle
- IFLYSIB, CONICET & Universidad Nacional de La Plata, Calle 59-789, 1900 La Plata, Argentina
| | - Osvaldo A Rosso
- Departamento de Informática en Salud, Hospital Italiano de Buenos Aires & CONICET, C1199ABB Ciudad Autónoma de Buenos Aires, Argentina
| | - Fernando Montani
- IFLYSIB, CONICET & Universidad Nacional de La Plata, Calle 59-789, 1900 La Plata, Argentina
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Zafar A, Hong KS. Neuronal Activation Detection Using Vector Phase Analysis with Dual Threshold Circles: A Functional Near-Infrared Spectroscopy Study. Int J Neural Syst 2018; 28:1850031. [PMID: 30045647 DOI: 10.1142/s0129065718500314] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
In this paper, a new vector phase diagram differentiating the initial decreasing phase (i.e. initial dip) and the delayed hemodynamic response (HR) phase of oxy-hemoglobin changes ( Δ HbO) of functional near-infrared spectroscopy (fNIRS) is developed. The vector phase diagram displays the trajectories of Δ HbO and deoxy-hemoglobin changes ( Δ HbR), as orthogonal components, in the Δ HbO- Δ HbR polar coordinates. To determine the occurrence of an initial dip, dual threshold circles (an inner circle from the resting state, an outer circle from the peak values of the initial dip and the main HR) are incorporated into the phase diagram for making decisions. The proposed scheme is then applied to a brain-computer interface scheme, and its performance is evaluated in classifying two finger tapping tasks (right-hand thumb and little finger) from the left motor cortex. Three gamma functions are used to model the initial dip, the main HR, and the undershoot in generating the designed HR function. In classifying two tapping tasks, the signal mean and signal minimum values during 0-2.5 s, as features of initial dip, are used. The linear discriminant analysis was utilized as a classifier. The experimental results show that the active brain locations of the two tasks were quite distinctive ( p < 0.05 ), and moreover, spatially specific if using the initial dip map at 4 s in comparison to the map of HRs at 14 s. Also, the average classification accuracy was improved from 59% to 74.9% when using the phase diagram of dual threshold circles.
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Affiliation(s)
- Amad Zafar
- 1 School of Mechanical Engineering, Pusan National University, 2 Busandaehak-ro, Geumjeong-gu, Busan 46241, Korea
| | - Keum-Shik Hong
- 1 School of Mechanical Engineering, Pusan National University, 2 Busandaehak-ro, Geumjeong-gu, Busan 46241, Korea
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Montangie L, Montani F. Effect of interacting second- and third-order stimulus-dependent correlations on population-coding asymmetries. Phys Rev E 2016; 94:042303. [PMID: 27841584 DOI: 10.1103/physreve.94.042303] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2016] [Indexed: 06/06/2023]
Abstract
Spike correlations among neurons are widely encountered in the brain. Although models accounting for pairwise interactions have proved able to capture some of the most important features of population activity at the level of the retina, the evidence shows that pairwise neuronal correlation analysis does not resolve cooperative population dynamics by itself. By means of a series expansion for short time scales of the mutual information conveyed by a population of neurons, the information transmission can be broken down into firing rate and correlational components. In a proposed extension of this framework, we investigate the information components considering both second- and higher-order correlations. We show that the existence of a mixed stimulus-dependent correlation term defines a new scenario for the interplay between pairwise and higher-than-pairwise interactions in noise and signal correlations that would lead either to redundancy or synergy in the information-theoretic sense.
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Affiliation(s)
- Lisandro Montangie
- Instituto de Física de Líquidos y Sistemas Biológicos (IFLYSIB), Universidad Nacional de La Plata, CONICET CCT-La Plata, Calle 59-789, La Plata 1900, Argentina
| | - Fernando Montani
- Instituto de Física de Líquidos y Sistemas Biológicos (IFLYSIB), Universidad Nacional de La Plata, CONICET CCT-La Plata, Calle 59-789, La Plata 1900, Argentina
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