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Khan U, Afrakhteh S, Mento F, Fatima N, De Rosa L, Custode LL, Azam Z, Torri E, Soldati G, Tursi F, Macioce VN, Smargiassi A, Inchingolo R, Perrone T, Iacca G, Demi L. Benchmark methodological approach for the application of artificial intelligence to lung ultrasound data from COVID-19 patients: From frame to prognostic-level. ULTRASONICS 2023; 132:106994. [PMID: 37015175 PMCID: PMC10060012 DOI: 10.1016/j.ultras.2023.106994] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 03/16/2023] [Accepted: 03/21/2023] [Indexed: 05/29/2023]
Abstract
Automated ultrasound imaging assessment of the effect of CoronaVirus disease 2019 (COVID-19) on lungs has been investigated in various studies using artificial intelligence-based (AI) methods. However, an extensive analysis of state-of-the-art Convolutional Neural Network-based (CNN) models for frame-level scoring, a comparative analysis of aggregation techniques for video-level scoring, together with a thorough evaluation of the capability of these methodologies to provide a clinically valuable prognostic-level score is yet missing within the literature. In addition to that, the impact on the analysis of the posterior probability assigned by the network to the predicted frames as well as the impact of temporal downsampling of LUS data are topics not yet extensively investigated. This paper takes on these challenges by providing a benchmark analysis of methods from frame to prognostic level. For frame-level scoring, state-of-the-art deep learning models are evaluated with additional analysis of best performing model in transfer-learning settings. A novel cross-correlation based aggregation technique is proposed for video and exam-level scoring. Results showed that ResNet-18, when trained from scratch, outperformed the existing methods with an F1-Score of 0.659. The proposed aggregation method resulted in 59.51%, 63.29%, and 84.90% agreement with clinicians at the video, exam, and prognostic levels, respectively; thus, demonstrating improved performances over the state of the art. It was also found that filtering frames based on the posterior probability shows higher impact on the LUS analysis in comparison to temporal downsampling. All of these analysis were conducted over the largest standardized and clinically validated LUS dataset from COVID-19 patients.
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Affiliation(s)
- Umair Khan
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Sajjad Afrakhteh
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Federico Mento
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Noreen Fatima
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Laura De Rosa
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Leonardo Lucio Custode
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Zihadul Azam
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Elena Torri
- Dipartimento di Emergenza ed Urgenza, Humanitas Gavazzeni Bergamo, Bergamo, Italy
| | - Gino Soldati
- Diagnostic and Interventional Ultrasound Unit, Valle del Serchio General Hospital, Lucca, Italy
| | | | | | - Andrea Smargiassi
- Pulmonary Medicine Unit, Department of Medical and Surgical Sciences, Fondazione Policlinico Universitario Agostino Gemelli IRCCS, Rome, Italy
| | - Riccardo Inchingolo
- Pulmonary Medicine Unit, Department of Medical and Surgical Sciences, Fondazione Policlinico Universitario Agostino Gemelli IRCCS, Rome, Italy
| | - Tiziano Perrone
- Dipartimento di Emergenza ed Urgenza, Humanitas Gavazzeni Bergamo, Bergamo, Italy
| | - Giovanni Iacca
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy
| | - Libertario Demi
- Department of Information Engineering and Computer Science, University of Trento, Trento, Italy.
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Khan U, Mento F, Nicolussi Giacomaz L, Trevisan R, Smargiassi A, Inchingolo R, Perrone T, Demi L. Deep Learning-Based Classification of Reduced Lung Ultrasound Data From COVID-19 Patients. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2022; 69:1661-1669. [PMID: 35320098 DOI: 10.1109/tuffc.2022.3161716] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The application of lung ultrasound (LUS) imaging for the diagnosis of lung diseases has recently captured significant interest within the research community. With the ongoing COVID-19 pandemic, many efforts have been made to evaluate LUS data. A four-level scoring system has been introduced to semiquantitatively assess the state of the lung, classifying the patients. Various deep learning (DL) algorithms supported with clinical validations have been proposed to automate the stratification process. However, no work has been done to evaluate the impact on the automated decision by varying pixel resolution and bit depth, leading to the reduction in size of overall data. This article evaluates the performance of DL algorithm over LUS data with varying pixel and gray-level resolution. The algorithm is evaluated over a dataset of 448 LUS videos captured from 34 examinations of 20 patients. All videos are resampled by a factor of 2, 3, and 4 of original resolution, and quantized to 128, 64, and 32 levels, followed by score prediction. The results indicate that the automated scoring shows negligible variation in accuracy when it comes to the quantization of intensity levels only. Combined effect of intensity quantization with spatial down-sampling resulted in a prognostic agreement ranging from 73.5% to 82.3%.These results also suggest that such level of prognostic agreement can be achieved over evaluation of data reduced to 32 times of its original size. Thus, laying foundation to efficient processing of data in resource constrained environments.
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Li L. Editorial: Leveraging Emerging Technology to Fight the COVID-19 Pandemic. JOURNAL OF INDUSTRIAL INTEGRATION AND MANAGEMENT 2021. [DOI: 10.1142/s2424862221020012] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Ling Li
- Department of Information Technology and Decision Science, Old Dominion University, Norfolk, VA 23529, USA
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