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For: Marshall RA, Aitken CE, Dorywalska M, Puglisi JD. Translation at the single-molecule level. Annu Rev Biochem 2008;77:177-203. [PMID: 18518820 DOI: 10.1146/annurev.biochem.77.070606.101431] [Citation(s) in RCA: 108] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Number Cited by Other Article(s)
1
Haghizadeh A, Iftikhar M, Dandpat SS, Simpson T. Looking at Biomolecular Interactions through the Lens of Correlated Fluorescence Microscopy and Optical Tweezers. Int J Mol Sci 2023;24:2668. [PMID: 36768987 PMCID: PMC9916863 DOI: 10.3390/ijms24032668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 12/19/2022] [Accepted: 01/26/2023] [Indexed: 02/01/2023]  Open
2
Khaova EA, Kashevarova NM, Tkachenko AG. Ribosome Hibernation: Molecular Strategy of Bacterial Survival (Review). APPL BIOCHEM MICRO+ 2022. [DOI: 10.1134/s0003683822030061] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
3
Koch A, Aguilera L, Morisaki T, Munsky B, Stasevich TJ. Quantifying the dynamics of IRES and cap translation with single-molecule resolution in live cells. Nat Struct Mol Biol 2020;27:1095-1104. [PMID: 32958947 DOI: 10.1038/s41594-020-0504-7] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Accepted: 08/12/2020] [Indexed: 12/12/2022]
4
Kumari N, Ciuba MA, Levitus M. Photophysical properties of the hemicyanine Dy-630 and its potential as a single-molecule fluorescent probe for biophysical applications. Methods Appl Fluoresc 2019;8:015004. [PMID: 31585443 DOI: 10.1088/2050-6120/ab4b0d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
5
Latallo MJ, Livingston NM, Wu B. Translation imaging of single mRNAs in established cell lines and primary cultured neurons. Methods 2019;162-163:12-22. [PMID: 30905747 DOI: 10.1016/j.ymeth.2019.03.021] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2019] [Revised: 03/17/2019] [Accepted: 03/20/2019] [Indexed: 12/28/2022]  Open
6
Sharma AK, Sormanni P, Ahmed N, Ciryam P, Friedrich UA, Kramer G, O’Brien EP. A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data. PLoS Comput Biol 2019;15:e1007070. [PMID: 31120880 PMCID: PMC6559674 DOI: 10.1371/journal.pcbi.1007070] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Revised: 06/11/2019] [Accepted: 05/06/2019] [Indexed: 01/23/2023]  Open
7
Katranidis A, Fitter J. Single-Molecule Techniques and Cell-Free Protein Synthesis: A Perfect Marriage. Anal Chem 2019;91:2570-2576. [PMID: 30648382 DOI: 10.1021/acs.analchem.8b03855] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
8
Prabhakar A, Puglisi EV, Puglisi JD. Single-Molecule Fluorescence Applied to Translation. Cold Spring Harb Perspect Biol 2019;11:cshperspect.a032714. [PMID: 29891562 DOI: 10.1101/cshperspect.a032714] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
9
Choi J, Grosely R, Prabhakar A, Lapointe CP, Wang J, Puglisi JD. How Messenger RNA and Nascent Chain Sequences Regulate Translation Elongation. Annu Rev Biochem 2018;87:421-449. [PMID: 29925264 PMCID: PMC6594189 DOI: 10.1146/annurev-biochem-060815-014818] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
10
Rodnina MV, Fischer N, Maracci C, Stark H. Ribosome dynamics during decoding. Philos Trans R Soc Lond B Biol Sci 2017;372:rstb.2016.0182. [PMID: 28138068 PMCID: PMC5311926 DOI: 10.1098/rstb.2016.0182] [Citation(s) in RCA: 65] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/16/2016] [Indexed: 11/24/2022]  Open
11
Bugaud O, Barbier N, Chommy H, Fiszman N, Le Gall A, Dulin D, Saguy M, Westbrook N, Perronet K, Namy O. Kinetics of CrPV and HCV IRES-mediated eukaryotic translation using single-molecule fluorescence microscopy. RNA (NEW YORK, N.Y.) 2017;23:1626-1635. [PMID: 28768714 PMCID: PMC5648031 DOI: 10.1261/rna.061523.117] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Accepted: 07/27/2017] [Indexed: 05/05/2023]
12
Host Cell S Phase Restricts Legionella pneumophila Intracellular Replication by Destabilizing the Membrane-Bound Replication Compartment. mBio 2017;8:mBio.02345-16. [PMID: 28830950 PMCID: PMC5565972 DOI: 10.1128/mbio.02345-16] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]  Open
13
Plitzko JM, Schuler B, Selenko P. Structural Biology outside the box-inside the cell. Curr Opin Struct Biol 2017;46:110-121. [PMID: 28735108 DOI: 10.1016/j.sbi.2017.06.007] [Citation(s) in RCA: 65] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Revised: 06/17/2017] [Accepted: 06/23/2017] [Indexed: 01/11/2023]
14
Sharma AK, O'Brien EP. Increasing Protein Production Rates Can Decrease the Rate at Which Functional Protein Is Produced and Their Steady-State Levels. J Phys Chem B 2017. [PMID: 28650169 DOI: 10.1021/acs.jpcb.7b01700] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
15
Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schröder GF, Grubmüller H, Ficner R, Rodnina MV, Stark H. The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature 2016;540:80-85. [PMID: 27842381 DOI: 10.1038/nature20560] [Citation(s) in RCA: 84] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2016] [Accepted: 10/24/2016] [Indexed: 01/29/2023]
16
Belardinelli R, Sharma H, Peske F, Wintermeyer W, Rodnina MV. Translocation as continuous movement through the ribosome. RNA Biol 2016;13:1197-1203. [PMID: 27801619 DOI: 10.1080/15476286.2016.1240140] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
17
Savir Y, Tlusty T. Comment on "Ribosome utilizes the minimum free energy changes to achieve the highest decoding rate and fidelity". Phys Rev E 2016;93:056401. [PMID: 27301009 DOI: 10.1103/physreve.93.056401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Indexed: 11/07/2022]
18
Shebl B, Menke DE, Pennella M, Poudyal RR, Burke DH, Cornish PV. Preparation of ribosomes for smFRET studies: A simplified approach. Arch Biochem Biophys 2016;603:118-30. [PMID: 27208427 DOI: 10.1016/j.abb.2016.05.010] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2016] [Revised: 05/11/2016] [Accepted: 05/12/2016] [Indexed: 11/18/2022]
19
Tinoco I, Kim HK, Yan S. Frameshifting dynamics. Biopolymers 2016;99:1147-66. [PMID: 23722586 DOI: 10.1002/bip.22293] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2013] [Revised: 05/14/2013] [Accepted: 05/20/2013] [Indexed: 01/26/2023]
20
Exploring the balance between folding and functional dynamics in proteins and RNA. Int J Mol Sci 2015;16:6868-89. [PMID: 25822873 PMCID: PMC4424993 DOI: 10.3390/ijms16046868] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2014] [Revised: 03/11/2015] [Accepted: 03/11/2015] [Indexed: 11/17/2022]  Open
21
Fung AWS, Leung CCY, Fahlman RP. The determination of tRNALeu recognition nucleotides for Escherichia coli L/F transferase. RNA (NEW YORK, N.Y.) 2014;20:1210-1222. [PMID: 24935875 PMCID: PMC4105747 DOI: 10.1261/rna.044529.114] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/23/2014] [Accepted: 04/28/2014] [Indexed: 06/03/2023]
22
da Costa MR, Pizzatti L, Lindoso RS, Sant'Anna JF, DuRocher B, Abdelhay E, Vieyra A. Mechanisms of kidney repair by human mesenchymal stromal cells after ischemia: a comprehensive view using label-free MS(E). Proteomics 2014;14:1480-93. [PMID: 24723500 DOI: 10.1002/pmic.201300084] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2013] [Revised: 02/24/2014] [Accepted: 03/27/2014] [Indexed: 01/08/2023]
23
NMR contour maps as a new parameter of carboxyl’s OH groups in amino acids recognition: A reason of tRNA–amino acid conjugation. Chem Phys 2014. [DOI: 10.1016/j.chemphys.2014.01.017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
24
Larson JD, Rodgers ML, Hoskins AA. Visualizing cellular machines with colocalization single molecule microscopy. Chem Soc Rev 2014;43:1189-200. [PMID: 23970346 PMCID: PMC3946777 DOI: 10.1039/c3cs60208g] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
25
Riboswitch structure and dynamics by smFRET microscopy. Methods Enzymol 2014;549:343-73. [PMID: 25432756 DOI: 10.1016/b978-0-12-801122-5.00015-5] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
26
Stennett EMS, Ciuba MA, Levitus M. Photophysical processes in single molecule organic fluorescent probes. Chem Soc Rev 2014;43:1057-75. [DOI: 10.1039/c3cs60211g] [Citation(s) in RCA: 214] [Impact Index Per Article: 21.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
27
Schuler B. Single-molecule FRET of protein structure and dynamics - a primer. J Nanobiotechnology 2013;11 Suppl 1:S2. [PMID: 24565277 PMCID: PMC4029180 DOI: 10.1186/1477-3155-11-s1-s2] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
28
Pytharopoulou S, Kournoutou GG, Leotsinidis M, Georgiou CD, Kalpaxis DL. Cadmium versus copper toxicity: insights from an integrated dissection of protein synthesis pathway in the digestive glands of mussel Mytilus galloprovincialis. JOURNAL OF HAZARDOUS MATERIALS 2013;260:263-71. [PMID: 23770617 DOI: 10.1016/j.jhazmat.2013.05.031] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2013] [Revised: 05/15/2013] [Accepted: 05/17/2013] [Indexed: 05/23/2023]
29
Quantitative single cell and single molecule proteomics for clinical studies. Curr Opin Biotechnol 2013;24:745-51. [DOI: 10.1016/j.copbio.2013.06.001] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2013] [Revised: 05/28/2013] [Accepted: 06/01/2013] [Indexed: 11/18/2022]
30
Microfluidic mixer designed for performing single-molecule kinetics with confocal detection on timescales from milliseconds to minutes. Nat Protoc 2013;8:1459-74. [PMID: 23845960 DOI: 10.1038/nprot.2013.082] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
31
Pytharopoulou S, Kournoutou GG, Leotsinidis M, Georgiou CD, Kalpaxis DL. Dysfunctions of the translational machinery in digestive glands of mussels exposed to mercury ions. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2013;134-135:23-33. [PMID: 23537583 DOI: 10.1016/j.aquatox.2013.02.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2013] [Revised: 02/20/2013] [Accepted: 02/26/2013] [Indexed: 06/02/2023]
32
Fan R, Xie J, Bai J, Wang H, Tian X, Bai R, Jia X, Yang L, Song Y, Herrid M, Gao W, He X, Yao J, Smith GW, Dong C. Skin transcriptome profiles associated with coat color in sheep. BMC Genomics 2013;14:389. [PMID: 23758853 PMCID: PMC3689618 DOI: 10.1186/1471-2164-14-389] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2013] [Accepted: 06/04/2013] [Indexed: 01/06/2023]  Open
33
Haenni D, Zosel F, Reymond L, Nettels D, Schuler B. Intramolecular distances and dynamics from the combined photon statistics of single-molecule FRET and photoinduced electron transfer. J Phys Chem B 2013;117:13015-28. [PMID: 23718771 DOI: 10.1021/jp402352s] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
34
Demeshkina N, Jenner L, Westhof E, Yusupov M, Yusupova G. New structural insights into the decoding mechanism: translation infidelity via a G·U pair with Watson-Crick geometry. FEBS Lett 2013;587:1848-57. [PMID: 23707250 DOI: 10.1016/j.febslet.2013.05.009] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2013] [Revised: 05/06/2013] [Accepted: 05/06/2013] [Indexed: 11/15/2022]
35
Chudaev M, Poruri K, Goldman E, Jakubowski H, Jain MR, Chen W, Li H, Tyagi S, Mandecki W. Design and properties of efficient tRNA:EF-Tu FRET system for studies of ribosomal translation. Protein Eng Des Sel 2013;26:347-57. [PMID: 23447652 PMCID: PMC3630515 DOI: 10.1093/protein/gzt006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2012] [Revised: 01/20/2013] [Accepted: 01/28/2013] [Indexed: 11/14/2022]  Open
36
Diao J, Zhao M, Zhang Y, Kyoung M, Brunger AT. Studying protein-reconstituted proteoliposome fusion with content indicators in vitro. Bioessays 2013;35:658-65. [PMID: 23625805 DOI: 10.1002/bies.201300010] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
37
Wang L, Wasserman MR, Feldman MB, Altman RB, Blanchard SC. Mechanistic insights into antibiotic action on the ribosome through single-molecule fluorescence imaging. Ann N Y Acad Sci 2013;1241:E1-16. [PMID: 23419024 DOI: 10.1111/j.1749-6632.2012.06839.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
38
The Ribosome as an Optimal Decoder: A Lesson in Molecular Recognition. Cell 2013;153:471-9. [DOI: 10.1016/j.cell.2013.03.032] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2011] [Revised: 10/03/2012] [Accepted: 03/22/2013] [Indexed: 11/24/2022]
39
Dynes JL, Steward O. Arc mRNA docks precisely at the base of individual dendritic spines indicating the existence of a specialized microdomain for synapse-specific mRNA translation. J Comp Neurol 2013;520:3105-19. [PMID: 22350812 DOI: 10.1002/cne.23073] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
40
SHARMA AJEETK, CHOWDHURY DEBASHISH. TEMPLATE-DIRECTED BIOPOLYMERIZATION: TAPE-COPYING TURING MACHINES. ACTA ACUST UNITED AC 2013. [DOI: 10.1142/s1793048012300083] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
41
Whitford PC, Sanbonmatsu KY, Onuchic JN. Biomolecular dynamics: order-disorder transitions and energy landscapes. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2012;75:076601. [PMID: 22790780 PMCID: PMC3695400 DOI: 10.1088/0034-4885/75/7/076601] [Citation(s) in RCA: 87] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
42
Lee G, Ha T. Single-Molecule Imaging: A Collagenase Pauses before Embarking on a Killing Spree. Curr Biol 2012;22:R499-501. [DOI: 10.1016/j.cub.2012.04.037] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
43
Real-time evidence for EF-G-induced dynamics of helix 44 in 16S rRNA. J Mol Biol 2012;422:45-57. [PMID: 22634282 DOI: 10.1016/j.jmb.2012.05.012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2011] [Revised: 05/03/2012] [Accepted: 05/08/2012] [Indexed: 11/21/2022]
44
Quality control of mRNA decoding on the bacterial ribosome. ADVANCES IN PROTEIN CHEMISTRY AND STRUCTURAL BIOLOGY 2012;86:95-128. [PMID: 22243582 DOI: 10.1016/b978-0-12-386497-0.00003-7] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
45
Excited states of ribosome translocation revealed through integrative molecular modeling. Proc Natl Acad Sci U S A 2011;108:18943-8. [PMID: 22080606 DOI: 10.1073/pnas.1108363108] [Citation(s) in RCA: 81] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
46
Saks ME, Sanderson LE, Choi DS, Crosby CM, Uhlenbeck OC. Functional consequences of T-stem mutations in E. coli tRNAThrUGU in vitro and in vivo. RNA (NEW YORK, N.Y.) 2011;17:1038-1047. [PMID: 21527672 PMCID: PMC3096036 DOI: 10.1261/rna.2427311] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2010] [Accepted: 03/22/2011] [Indexed: 05/30/2023]
47
Lee G, Yoo J, Leslie BJ, Ha T. Single-molecule analysis reveals three phases of DNA degradation by an exonuclease. Nat Chem Biol 2011;7:367-74. [PMID: 21552271 PMCID: PMC3097319 DOI: 10.1038/nchembio.561] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2010] [Accepted: 02/25/2011] [Indexed: 11/12/2022]
48
Elucidating mechanistic principles underpinning eukaryotic translation initiation using quantitative fluorescence methods. Biochem Soc Trans 2011;38:1587-92. [PMID: 21118131 DOI: 10.1042/bst0381587] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
49
Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding. Proc Natl Acad Sci U S A 2011;108:5215-20. [PMID: 21402928 DOI: 10.1073/pnas.1102128108] [Citation(s) in RCA: 83] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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Bustamante C, Cheng W, Mejia YX, Meija YX. Revisiting the central dogma one molecule at a time. Cell 2011;144:480-97. [PMID: 21335233 PMCID: PMC3063003 DOI: 10.1016/j.cell.2011.01.033] [Citation(s) in RCA: 122] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2010] [Revised: 01/21/2011] [Accepted: 01/26/2011] [Indexed: 12/24/2022]
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