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Frolov RV. On the role of transient depolarization-activated K + current in microvillar photoreceptors. J Gen Physiol 2018; 150:1287-1298. [PMID: 30049678 PMCID: PMC6122929 DOI: 10.1085/jgp.201711940] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Revised: 05/11/2018] [Accepted: 06/28/2018] [Indexed: 01/30/2023] Open
Abstract
The transient K+ current carried by Shaker channels is thought to play a role in low-frequency signal amplification in Drosophila melanogaster photoreceptors. By combining patch-clamp recordings with a physiological variability analysis, Frolov reveals its role in high-frequency signal transmission. Photoreceptors in the compound eyes of most insect species express two functional types of depolarization-activated potassium currents: a transient A-type current (IA) and a sustained delayed rectifier current (IDR). The role of Shaker-dependent IA in Drosophila melanogaster photoreceptors was previously investigated by comparing intracellular recordings from Shaker and wild-type photoreceptors. Shaker channels were proposed to be involved in low-frequency signal amplification in dim light and reduction of the metabolic cost of information transfer. Here, I study the function of IA in photoreceptors of the cockroach Panchlora nivea using the patch-clamp method. Responses to Gaussian white-noise stimuli reveal that blockade of IA with 4-aminopyridine has no discernible effect on voltage responses or information processing. However, because open-channel blockers are often ineffective at low membrane potentials, no conclusion on the role of IA could be made on the basis of negative results of pharmacological tests. Using a relatively large set of control data, a physiological variability analysis was performed to discern the role of IA. Amplitudes of the IA window current and half-activation potentials correlate strongly with membrane corner frequencies, especially in dim light, indicating that IA facilitates transmission of higher frequencies. Consistent with voltage-dependent inactivation of IA, these correlations decrease with depolarization in brighter backgrounds. In contrast, correlations involving IDR are comparatively weak. Upon reexamining photoreceptor conductance in wild-type and Shaker strains of D. melanogaster, I find a biphasic voltage dependence near the resting potential in a minority of photoreceptors from both strains, indicating that Shaker channels are not crucial for early amplification of voltage signals in D. melanogaster photoreceptors. Leak current in Shaker photoreceptors at the level of the soma is not elevated. These results suggest a novel role for IA in facilitating transmission of high-frequency signals in microvillar photoreceptors.
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Affiliation(s)
- Roman V Frolov
- Faculty of Science, Nano and Molecular Materials Research Unit, University of Oulu, Oulu, Finland
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2
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Juusola M, Dau A, Song Z, Solanki N, Rien D, Jaciuch D, Dongre SA, Blanchard F, de Polavieja GG, Hardie RC, Takalo J. Microsaccadic sampling of moving image information provides Drosophila hyperacute vision. eLife 2017; 6:26117. [PMID: 28870284 PMCID: PMC5584993 DOI: 10.7554/elife.26117] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2017] [Accepted: 07/25/2017] [Indexed: 11/13/2022] Open
Abstract
Small fly eyes should not see fine image details. Because flies exhibit saccadic visual behaviors and their compound eyes have relatively few ommatidia (sampling points), their photoreceptors would be expected to generate blurry and coarse retinal images of the world. Here we demonstrate that Drosophila see the world far better than predicted from the classic theories. By using electrophysiological, optical and behavioral assays, we found that R1-R6 photoreceptors’ encoding capacity in time is maximized to fast high-contrast bursts, which resemble their light input during saccadic behaviors. Whilst over space, R1-R6s resolve moving objects at saccadic speeds beyond the predicted motion-blur-limit. Our results show how refractory phototransduction and rapid photomechanical photoreceptor contractions jointly sharpen retinal images of moving objects in space-time, enabling hyperacute vision, and explain how such microsaccadic information sampling exceeds the compound eyes’ optical limits. These discoveries elucidate how acuity depends upon photoreceptor function and eye movements. Fruit flies have five eyes: two large compound eyes which support vision, plus three smaller single lens eyes which are used for navigation. Each compound eye monitors 180° of space and consists of roughly 750 units, each containing eight light-sensitive cells called photoreceptors. This relatively wide spacing of photoreceptors is thought to limit the sharpness, or acuity, of vision in fruit flies. The area of the human retina (the light-sensitive surface at back of our eyes) that generates our sharpest vision contains photoreceptors that are 500 times more densely packed. Despite their differing designs, human and fruit fly eyes work via the same general principles. If we, or a fruit fly, were to hold our gaze completely steady, the world would gradually fade from view as the eye adapted to the unchanging visual stimulus. To ensure this does not happen, animals continuously make rapid, automatic eye movements called microsaccades. These refresh the image on the retina and prevent it from fading. Yet it is not known why do they not also cause blurred vision. Standard accounts of vision assume that the retina and the brain perform most of the information processing required, with photoreceptors simply detecting how much light enters the eye. However, Juusola, Dau, Song et al. now challenge this idea by showing that photoreceptors are specially adapted to detect the fluctuating patterns of light that enter the eye as a result of microsaccades. Moreover, fruit fly eyes resolve small moving objects far better than would be predicted based on the spacing of their photoreceptors. The discovery that photoreceptors are well adapted to deal with eye movements changes our understanding of insect vision. The findings also disprove the 100-year-old dogma that the spacing of photoreceptors limits the sharpness of vision in compound eyes. Further studies are required to determine whether photoreceptors in the retinas of other animals, including humans, have similar properties.
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Affiliation(s)
- Mikko Juusola
- National Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, China.,Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - An Dau
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - Zhuoyi Song
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - Narendra Solanki
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - Diana Rien
- National Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, China.,Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - David Jaciuch
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - Sidhartha Anil Dongre
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - Florence Blanchard
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
| | - Gonzalo G de Polavieja
- Champalimaud Neuroscience Programme, Champalimaud Center for the Unknown, Lisbon, Portugal
| | - Roger C Hardie
- Department of Physiology Development and Neuroscience, Cambridge University, Cambridge, United Kingdom
| | - Jouni Takalo
- Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom
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3
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French AS, Immonen EV, Frolov RV. Static and Dynamic Adaptation of Insect Photoreceptor Responses to Naturalistic Stimuli. Front Physiol 2016; 7:477. [PMID: 27826250 PMCID: PMC5078296 DOI: 10.3389/fphys.2016.00477] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Accepted: 10/05/2016] [Indexed: 02/03/2023] Open
Abstract
We describe a new nonlinear dynamic model of insect phototransduction using a NLN (nonlinear, linear, nonlinear) block structure. The first nonlinear stage provides a single exponential decline in gain and mean following the start of light stimulation. The linear stage uses a two-parameter log-normal convolution model previously applied alone to insect photoreceptors. The final stage is a static quadratic function. The model fitted current and voltage responses of isolated single photoreceptors from three different insect species with reasonable fidelity when they were stimulated by naturalistic time series having wide bandwidth and contrast, over a light intensity range of >1:104. Mean squared error values for receptor current and receptor potential varied over ~2–60%, with many values below 10%. Linear log-normal filter parameters did not vary strongly with species or light intensity. Initial gain reduction was only large for the highest light levels, while the time constant of gain and mean reduction decreased with light intensity. The final nonlinearity changed from positively to negatively quadratic with increasing light intensity, indicating a change from threshold, or expansion to saturating compression with greater signal strength. Photoreceptor information transmission was estimated by linear information capacity and signal entropy measurements of both experimental data and predicted outputs of the model for identical stimuli at each light level. Comparison of actual and predicted data indicated significant added noise during phototransduction, with information being progressively lost by nonlinear behavior with increasing light intensity.
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Affiliation(s)
- Andrew S French
- Department of Physiology and Biophysics, Dalhousie University Nova Scotia, CA, Canada
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Pfeiffer K, French AS. Naturalistic stimulation changes the dynamic response of action potential encoding in a mechanoreceptor. Front Physiol 2015; 6:303. [PMID: 26578975 PMCID: PMC4626565 DOI: 10.3389/fphys.2015.00303] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2015] [Accepted: 10/12/2015] [Indexed: 11/13/2022] Open
Abstract
Naturalistic signals were created from vibrations made by locusts walking on a Sansevieria plant. Both naturalistic and Gaussian noise signals were used to mechanically stimulate VS-3 slit-sense mechanoreceptor neurons of the spider, Cupiennius salei, with stimulus amplitudes adjusted to give similar firing rates for either stimulus. Intracellular microelectrodes recorded action potentials, receptor potential, and receptor current, using current clamp and voltage clamp. Frequency response analysis showed that naturalistic stimulation contained relatively more power at low frequencies, and caused increased neuronal sensitivity to higher frequencies. In contrast, varying the amplitude of Gaussian stimulation did not change neuronal dynamics. Naturalistic stimulation contained less entropy than Gaussian, but signal entropy was higher than stimulus in the resultant receptor current, indicating addition of uncorrelated noise during transduction. The presence of added noise was supported by measuring linear information capacity in the receptor current. Total entropy and information capacity in action potentials produced by either stimulus were much lower than in earlier stages, and limited to the maximum entropy of binary signals. We conclude that the dynamics of action potential encoding in VS-3 neurons are sensitive to the form of stimulation, but entropy and information capacity of action potentials are limited by firing rate.
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Affiliation(s)
- Keram Pfeiffer
- Department of Physiology and Biophysics, Dalhousie University Halifax, NS, Canada
| | - Andrew S French
- Department of Physiology and Biophysics, Dalhousie University Halifax, NS, Canada
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5
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Spatio-temporal dynamics of impulse responses to figure motion in optic flow neurons. PLoS One 2015; 10:e0126265. [PMID: 25955416 PMCID: PMC4425674 DOI: 10.1371/journal.pone.0126265] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2014] [Accepted: 03/31/2015] [Indexed: 11/24/2022] Open
Abstract
White noise techniques have been used widely to investigate sensory systems in both vertebrates and invertebrates. White noise stimuli are powerful in their ability to rapidly generate data that help the experimenter decipher the spatio-temporal dynamics of neural and behavioral responses. One type of white noise stimuli, maximal length shift register sequences (m-sequences), have recently become particularly popular for extracting response kernels in insect motion vision. We here use such m-sequences to extract the impulse responses to figure motion in hoverfly lobula plate tangential cells (LPTCs). Figure motion is behaviorally important and many visually guided animals orient towards salient features in the surround. We show that LPTCs respond robustly to figure motion in the receptive field. The impulse response is scaled down in amplitude when the figure size is reduced, but its time course remains unaltered. However, a low contrast stimulus generates a slower response with a significantly longer time-to-peak and half-width. Impulse responses in females have a slower time-to-peak than males, but are otherwise similar. Finally we show that the shapes of the impulse response to a figure and a widefield stimulus are very similar, suggesting that the figure response could be coded by the same input as the widefield response.
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Geurten BRH, Jähde P, Corthals K, Göpfert MC. Saccadic body turns in walking Drosophila. Front Behav Neurosci 2014; 8:365. [PMID: 25386124 PMCID: PMC4205811 DOI: 10.3389/fnbeh.2014.00365] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Accepted: 10/02/2014] [Indexed: 02/01/2023] Open
Abstract
Drosophila melanogaster structures its optic flow during flight by interspersing translational movements with abrupt body rotations. Whether these “body saccades” are accompanied by steering movements of the head is a matter of debate. By tracking single flies moving freely in an arena, we now discovered that walking Drosophila also perform saccades. Movement analysis revealed that the flies separate rotational from translational movements by quickly turning their bodies by 15 degrees within a tenth of a second. Although walking flies moved their heads by up to 20 degrees about their bodies, their heads moved with the bodies during saccadic turns. This saccadic strategy contrasts with the head saccades reported for e.g., blowflies and honeybees, presumably reflecting optical constraints: modeling revealed that head saccades as described for these latter insects would hardly affect the retinal input in Drosophila because of the lower acuity of its compound eye. The absence of head saccades in Drosophila was associated with the absence of haltere oscillations, which seem to guide head movements in other flies. In addition to adding new twists to Drosophila walking behavior, our analysis shows that Drosophila does not turn its head relative to its body when turning during walking.
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Affiliation(s)
- Bart R H Geurten
- Department of Cellular Neurobiology, Georg-August University of Göttingen Göttingen, Germany
| | - Philipp Jähde
- Department of Cellular Neurobiology, Georg-August University of Göttingen Göttingen, Germany
| | - Kristina Corthals
- Department of Cellular Neurobiology, Georg-August University of Göttingen Göttingen, Germany
| | - Martin C Göpfert
- Department of Cellular Neurobiology, Georg-August University of Göttingen Göttingen, Germany
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Ignatova I, French AS, Immonen EV, Frolov R, Weckström M. Equilibrating errors: reliable estimation of information transmission rates in biological systems with spectral analysis-based methods. BIOLOGICAL CYBERNETICS 2014; 108:305-320. [PMID: 24692025 DOI: 10.1007/s00422-014-0598-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2013] [Accepted: 03/16/2014] [Indexed: 06/03/2023]
Abstract
Shannon's seminal approach to estimating information capacity is widely used to quantify information processing by biological systems. However, the Shannon information theory, which is based on power spectrum estimation, necessarily contains two sources of error: time delay bias error and random error. These errors are particularly important for systems with relatively large time delay values and for responses of limited duration, as is often the case in experimental work. The window function type and size chosen, as well as the values of inherent delays cause changes in both the delay bias and random errors, with possibly strong effect on the estimates of system properties. Here, we investigated the properties of these errors using white-noise simulations and analysis of experimental photoreceptor responses to naturalistic and white-noise light contrasts. Photoreceptors were used from several insect species, each characterized by different visual performance, behavior, and ecology. We show that the effect of random error on the spectral estimates of photoreceptor performance (gain, coherence, signal-to-noise ratio, Shannon information rate) is opposite to that of the time delay bias error: the former overestimates information rate, while the latter underestimates it. We propose a new algorithm for reducing the impact of time delay bias error and random error, based on discovering, and then using that size of window, at which the absolute values of these errors are equal and opposite, thus cancelling each other, allowing minimally biased measurement of neural coding.
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Affiliation(s)
- Irina Ignatova
- Department of Physics, University of Oulu, Oulu, Finland
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8
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Sengupta B, Laughlin SB, Niven JE. Consequences of converting graded to action potentials upon neural information coding and energy efficiency. PLoS Comput Biol 2014; 10:e1003439. [PMID: 24465197 PMCID: PMC3900385 DOI: 10.1371/journal.pcbi.1003439] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2013] [Accepted: 12/02/2013] [Indexed: 11/18/2022] Open
Abstract
Information is encoded in neural circuits using both graded and action potentials, converting between them within single neurons and successive processing layers. This conversion is accompanied by information loss and a drop in energy efficiency. We investigate the biophysical causes of this loss of information and efficiency by comparing spiking neuron models, containing stochastic voltage-gated Na(+) and K(+) channels, with generator potential and graded potential models lacking voltage-gated Na(+) channels. We identify three causes of information loss in the generator potential that are the by-product of action potential generation: (1) the voltage-gated Na(+) channels necessary for action potential generation increase intrinsic noise and (2) introduce non-linearities, and (3) the finite duration of the action potential creates a 'footprint' in the generator potential that obscures incoming signals. These three processes reduce information rates by ∼50% in generator potentials, to ∼3 times that of spike trains. Both generator potentials and graded potentials consume almost an order of magnitude less energy per second than spike trains. Because of the lower information rates of generator potentials they are substantially less energy efficient than graded potentials. However, both are an order of magnitude more efficient than spike trains due to the higher energy costs and low information content of spikes, emphasizing that there is a two-fold cost of converting analogue to digital; information loss and cost inflation.
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Affiliation(s)
- Biswa Sengupta
- Wellcome Trust Centre for Neuroimaging, University College London, London, United Kingdom
- Centre for Neuroscience, Indian Institute of Science, Bangalore, India
| | | | - Jeremy Edward Niven
- School of Life Sciences and Centre for Computational Neuroscience and Robotics, University of Sussex, Falmer, Brighton, United Kingdom
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9
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Membrane filtering properties of the bumblebee (Bombus terrestris) photoreceptors across three spectral classes. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2013; 199:629-39. [DOI: 10.1007/s00359-013-0814-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2013] [Revised: 03/20/2013] [Accepted: 03/20/2013] [Indexed: 10/27/2022]
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Heimonen K, Immonen EV, Frolov RV, Salmela I, Juusola M, Vähäsöyrinki M, Weckström M. Signal coding in cockroach photoreceptors is tuned to dim environments. J Neurophysiol 2012; 108:2641-52. [DOI: 10.1152/jn.00588.2012] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
In dim light, scarcity of photons typically leads to poor vision. Nonetheless, many animals show visually guided behavior with dim environments. We investigated the signaling properties of photoreceptors of the dark active cockroach ( Periplaneta americana) using intracellular and whole-cell patch-clamp recordings to determine whether they show selective functional adaptations to dark. Expectedly, dark-adapted photoreceptors generated large and slow responses to single photons. However, when light adapted, responses of both phototransduction and the nontransductive membrane to white noise (WN)-modulated stimuli remained slow with corner frequencies ∼20 Hz. This promotes temporal integration of light inputs and maintains high sensitivity of vision. Adaptive changes in dynamics were limited to dim conditions. Characteristically, both step and frequency responses stayed effectively unchanged for intensities >1,000 photons/s/photoreceptor. A signal-to-noise ratio (SNR) of the light responses was transiently higher at frequencies <5 Hz for ∼5 s after light onset but deteriorated to a lower value upon longer stimulation. Naturalistic light stimuli, as opposed to WN, evoked markedly larger responses with higher SNRs at low frequencies. This allowed realistic estimates of information transfer rates, which saturated at ∼100 bits/s at low-light intensities. We found, therefore, selective adaptations beneficial for vision in dim environments in cockroach photoreceptors: large amplitude of single-photon responses, constant high level of temporal integration of light inputs, saturation of response properties at low intensities, and only transiently efficient encoding of light contrasts. The results also suggest that the sources of the large functional variability among different photoreceptors reside mostly in phototransduction processes and not in the properties of the nontransductive membrane.
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Affiliation(s)
- K. Heimonen
- University of Oulu, Department of Physics, Oulu, Finland
| | - E.-V. Immonen
- University of Oulu, Department of Physics, Oulu, Finland
| | - R. V. Frolov
- University of Oulu, Department of Physics, Oulu, Finland
| | - I. Salmela
- University of Oulu, Department of Physics, Oulu, Finland
| | - M. Juusola
- University of Sheffield, Department of Biomedical Science, Sheffield, United Kingdom; and
- State Key Laboratory of Cognitive Neuroscience, Beijing Normal University, Beijing, China
| | | | - M. Weckström
- University of Oulu, Department of Physics, Oulu, Finland
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Salmela I, Immonen EV, Frolov R, Krause S, Krause Y, Vähäsöyrinki M, Weckström M. Cellular elements for seeing in the dark: voltage-dependent conductances in cockroach photoreceptors. BMC Neurosci 2012; 13:93. [PMID: 22867024 PMCID: PMC3472236 DOI: 10.1186/1471-2202-13-93] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2012] [Accepted: 07/12/2012] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The importance of voltage-dependent conductances in sensory information processing is well-established in insect photoreceptors. Here we present the characterization of electrical properties in photoreceptors of the cockroach (Periplaneta americana), a nocturnal insect with a visual system adapted for dim light. RESULTS Whole-cell patch-clamped photoreceptors had high capacitances and input resistances, indicating large photosensitive rhabdomeres suitable for efficient photon capture and amplification of small photocurrents at low light levels. Two voltage-dependent potassium conductances were found in the photoreceptors: a delayed rectifier type (KDR) and a fast transient inactivating type (KA). Activation of KDR occurred during physiological voltage responses induced by light stimulation, whereas KA was nearly fully inactivated already at the dark resting potential. In addition, hyperpolarization of photoreceptors activated a small-amplitude inward-rectifying (IR) current mediated at least partially by chloride. Computer simulations showed that KDR shapes light responses by opposing the light-induced depolarization and speeding up the membrane time constant, whereas KA and IR have a negligible role in the majority of cells. However, larger KA conductances were found in smaller and rapidly adapting photoreceptors, where KA could have a functional role. CONCLUSIONS The relative expression of KA and KDR in cockroach photoreceptors was opposite to the previously hypothesized framework for dark-active insects, necessitating further comparative work on the conductances. In general, the varying deployment of stereotypical K+ conductances in insect photoreceptors highlights their functional flexibility in neural coding.
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Affiliation(s)
- Iikka Salmela
- Department of Physics, University of Oulu, Oulu, Finland
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Takalo J, Piironen A, Honkanen A, Lempeä M, Aikio M, Tuukkanen T, Vähäsöyrinki M. A fast and flexible panoramic virtual reality system for behavioural and electrophysiological experiments. Sci Rep 2012; 2:324. [PMID: 22442752 PMCID: PMC3310229 DOI: 10.1038/srep00324] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2012] [Accepted: 02/27/2012] [Indexed: 11/09/2022] Open
Abstract
Ideally, neuronal functions would be studied by performing experiments with unconstrained animals whilst they behave in their natural environment. Although this is not feasible currently for most animal models, one can mimic the natural environment in the laboratory by using a virtual reality (VR) environment. Here we present a novel VR system based upon a spherical projection of computer generated images using a modified commercial data projector with an add-on fish-eye lens. This system provides equidistant visual stimulation with extensive coverage of the visual field, high spatio-temporal resolution and flexible stimulus generation using a standard computer. It also includes a track-ball system for closed-loop behavioural experiments with walking animals. We present a detailed description of the system and characterize it thoroughly. Finally, we demonstrate the VR system’s performance whilst operating in closed-loop conditions by showing the movement trajectories of the cockroaches during exploratory behaviour in a VR forest.
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Takalo J, Ignatova I, Weckström M, Vähäsöyrinki M. A novel estimator for the rate of information transfer by continuous signals. PLoS One 2011; 6:e18792. [PMID: 21494562 PMCID: PMC3073986 DOI: 10.1371/journal.pone.0018792] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2010] [Accepted: 03/18/2011] [Indexed: 11/19/2022] Open
Abstract
The information transfer rate provides an objective and rigorous way to quantify how much information is being transmitted through a communications channel whose input and output consist of time-varying signals. However, current estimators of information content in continuous signals are typically based on assumptions about the system's linearity and signal statistics, or they require prohibitive amounts of data. Here we present a novel information rate estimator without these limitations that is also optimized for computational efficiency. We validate the method with a simulated Gaussian information channel and demonstrate its performance with two example applications. Information transfer between the input and output signals of a nonlinear system is analyzed using a sensory receptor neuron as the model system. Then, a climate data set is analyzed to demonstrate that the method can be applied to a system based on two outputs generated by interrelated random processes. These analyses also demonstrate that the new method offers consistent performance in situations where classical methods fail. In addition to these examples, the method is applicable to a wide range of continuous time series commonly observed in the natural sciences, economics and engineering.
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Affiliation(s)
- Jouni Takalo
- Department of Physics, Biophysics and Biocenter Oulu, University of Oulu, Oulun yliopisto, Finland
| | - Irina Ignatova
- Department of Physics, Biophysics and Biocenter Oulu, University of Oulu, Oulun yliopisto, Finland
| | - Matti Weckström
- Department of Physics, Biophysics and Biocenter Oulu, University of Oulu, Oulun yliopisto, Finland
| | - Mikko Vähäsöyrinki
- Department of Physics, Biophysics and Biocenter Oulu, University of Oulu, Oulun yliopisto, Finland
- * E-mail:
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Niven JE, Laughlin SB. Energy limitation as a selective pressure on the evolution of sensory systems. ACTA ACUST UNITED AC 2008; 211:1792-804. [PMID: 18490395 DOI: 10.1242/jeb.017574] [Citation(s) in RCA: 644] [Impact Index Per Article: 40.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Evolution of animal morphology, physiology and behaviour is shaped by the selective pressures to which they are subject. Some selective pressures act to increase the benefits accrued whilst others act to reduce the costs incurred, affecting the cost/benefit ratio. Selective pressures therefore produce a trade-off between costs and benefits that ultimately influences the fitness of the whole organism. The nervous system has a unique position as the interface between morphology, physiology and behaviour; the final output of the nervous system is the behaviour of the animal, which is a product of both its morphology and physiology. The nervous system is under selective pressure to generate adaptive behaviour, but at the same time is subject to costs related to the amount of energy that it consumes. Characterising this trade-off between costs and benefits is essential to understanding the evolution of nervous systems, including our own. Within the nervous system, sensory systems are the most amenable to analysing costs and benefits, not only because their function can be more readily defined than that of many central brain regions and their benefits quantified in terms of their performance, but also because recent studies of sensory systems have begun to directly assess their energetic costs. Our review focuses on the visual system in particular, although the principles we discuss are equally applicable throughout the nervous system. Examples are taken from a wide range of sensory modalities in both vertebrates and invertebrates. We aim to place the studies we review into an evolutionary framework. We combine experimentally determined measures of energy consumption from whole retinas of rabbits and flies with intracellular measurements of energy consumption from single fly photoreceptors and recently constructed energy budgets for neural processing in rats to assess the contributions of various components to neuronal energy consumption. Taken together, these studies emphasize the high costs of maintaining neurons at rest and whilst signalling. A substantial proportion of neuronal energy consumption is related to the movements of ions across the neuronal cell membrane through ion channels, though other processes such as vesicle loading and transmitter recycling also consume energy. Many of the energetic costs within neurons are linked to 3Na(+)/2K(+) ATPase activity, which consumes energy to pump Na(+) and K(+) ions across the cell membrane and is essential for the maintenance of the resting potential and its restoration following signalling. Furthermore, recent studies in fly photoreceptors show that energetic costs can be related, via basic biophysical relationships, to their function. These findings emphasize that neurons are subject to a law of diminishing returns that severely penalizes excess functional capacity with increased energetic costs. The high energetic costs associated with neural tissue favour energy efficient coding and wiring schemes, which have been found in numerous sensory systems. We discuss the role of these efficient schemes in reducing the costs of information processing. Assessing evidence from a wide range of vertebrate and invertebrate examples, we show that reducing energy expenditure can account for many of the morphological features of sensory systems and has played a key role in their evolution.
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Affiliation(s)
- Jeremy E Niven
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK.
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Vähäsöyrinki M, Niven JE, Hardie RC, Weckström M, Juusola M. Robustness of neural coding in Drosophila photoreceptors in the absence of slow delayed rectifier K+ channels. J Neurosci 2006; 26:2652-60. [PMID: 16525044 PMCID: PMC6675149 DOI: 10.1523/jneurosci.3316-05.2006] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2005] [Revised: 01/16/2006] [Accepted: 01/16/2006] [Indexed: 11/21/2022] Open
Abstract
Determining the contribution of a single type of ion channel to information processing within a neuron requires not only knowledge of the properties of the channel but also understanding of its function within a complex system. We studied the contribution of slow delayed rectifier K+ channels to neural coding in Drosophila photoreceptors by combining genetic and electrophysiological approaches with biophysical modeling. We show that the Shab gene encodes the slow delayed rectifier K+ channel and identify a novel voltage-gated K+ conductance. Analysis of the in vivo recorded voltage responses together with their computer-simulated counterparts demonstrates that Shab channels in Drosophila photoreceptors attenuate the light-induced depolarization and prevent response saturation in bright light. We also show that reduction of the Shab conductance in mutant photoreceptors is accompanied by a proportional drop in their input resistance. This reduction in input resistance partially restores the signaling range, sensitivity, and dynamic coding of light intensities of Shab photoreceptors to those of the wild-type counterparts. However, loss of the Shab channels may affect both the energy efficiency of coding and the processing of natural stimuli. Our results highlight the role of different types of voltage-gated K+ channels in the performance of the photoreceptors and provide insight into functional robustness against the perturbation of specific ion channel composition.
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