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Feng L, Os Andersen T, Heldal Hagen L, Bilgic B, Jarle Horn S. Bioaugmentation by enriched hydrogenotrophic methanogens into trickle bed reactors for H 2/CO 2 conversion. BIORESOURCE TECHNOLOGY 2024; 408:131225. [PMID: 39111397 DOI: 10.1016/j.biortech.2024.131225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Revised: 08/03/2024] [Accepted: 08/04/2024] [Indexed: 08/11/2024]
Abstract
Biomethanation represents a promising approach for biomethane production, with biofilm-based processes like trickle bed reactors (TBRs) being among the most efficient solutions. However, maintaining stable performance can be challenging, and both pure and mixed culture approaches have been applied to address this. In this study, inocula enriched with hydrogenotrophic methanogens were introduced to to TBRs as bioaugmentation strategy to assess their impacts on the process performance and microbial community dynamics. Metagenomic analysis revealed a metagenome-assembled genome belonging to the hydrogenotrophic genus Methanobacterium, which became dominant during enrichment and successfully colonized the TBR biofilm after bioaugmentation. The TBRs achieved a biogas production with > 96 % methane. The bioaugmented reactor consumed additional H2. This may be due to microbial species utilizing CO2 and H2 via various CO2 reduction pathways. Overall, implementing bioaugmentation in TBRs showed potential for establishing targeted species, although challenges remain in managing H2 consumption and optimizing microbial interactions.
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Affiliation(s)
- Lu Feng
- Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431 Ås, Norway.
| | - Thea Os Andersen
- Faculty of Chemistry, Biotechnology, and Food Science, Norwegian University of Life Sciences (NMBU), P.O. Box 5003, 1432 Ås, Norway
| | - Live Heldal Hagen
- Faculty of Chemistry, Biotechnology, and Food Science, Norwegian University of Life Sciences (NMBU), P.O. Box 5003, 1432 Ås, Norway
| | - Begum Bilgic
- Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431 Ås, Norway; Faculty of Chemistry, Biotechnology, and Food Science, Norwegian University of Life Sciences (NMBU), P.O. Box 5003, 1432 Ås, Norway
| | - Svein Jarle Horn
- Norwegian Institute of Bioeconomy Research (NIBIO), P.O. Box 115, 1431 Ås, Norway; Faculty of Chemistry, Biotechnology, and Food Science, Norwegian University of Life Sciences (NMBU), P.O. Box 5003, 1432 Ås, Norway
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Markt R, Prem EM, Lackner N, Mutschlechner M, Illmer P, Wagner AO. Pre-treatment with Trichoderma viride: Towards a better understanding of its consequences for anaerobic digestion. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024; 16:e13281. [PMID: 38940659 PMCID: PMC11212294 DOI: 10.1111/1758-2229.13281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Accepted: 04/30/2024] [Indexed: 06/29/2024]
Abstract
Understanding and optimising biological pre-treatment strategies for enhanced bio-methane production is a central aspect in second-generation biofuel research. In this regard, the application of fungi for pre-treatment seems highly promising; however, understanding the mode of action is crucial. Here, we show how aerobic pre-treatment of crystalline cellulose with the cellulolytic Trichoderma viride affects substrate degradability during mesophilic, anaerobic digestion. It could be demonstrated that fungal pre-treatment resulted in a slightly reduced substrate mass. Nevertheless, no significant impact on the overall methane yield was found during batch fermentation. Short chain organic acids accumulation, thus, overall degradation dynamics including methane production kinetics were affected by the pre-treatment as shown by Gompertz modelling. Finally, 16S rRNA amplicon sequencing followed by ANCOM-BC resulted in up to 53 operative taxonomic units including fermentative, syntrophic and methanogenic taxa, whereby their relative abundances were significantly affected by fungal pre-treatment depending on the duration of the pre-treatment. The results demonstrated the impact of soft rot fungal pre-treatment of cellulose on subsequent anaerobic cellulose hydrolysis as well as on methanogenic activity. To the best of our knowledge, this is the first study to investigate the direct causal effects of pre-treatment with T. viride on basic but crucial anaerobic digestion parameters in a highly standardised approach.
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Affiliation(s)
- Rudolf Markt
- Department of MicrobiologyUniversität InnsbruckInnsbruckAustria
| | - Eva Maria Prem
- Department of MicrobiologyUniversität InnsbruckInnsbruckAustria
| | - Nina Lackner
- Department of MicrobiologyUniversität InnsbruckInnsbruckAustria
| | | | - Paul Illmer
- Department of MicrobiologyUniversität InnsbruckInnsbruckAustria
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Robazza A, Baleeiro FCF, Kleinsteuber S, Neumann A. Two-stage conversion of syngas and pyrolysis aqueous condensate into L-malate. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2024; 17:85. [PMID: 38907325 PMCID: PMC11191387 DOI: 10.1186/s13068-024-02532-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Accepted: 06/13/2024] [Indexed: 06/23/2024]
Abstract
Hybrid thermochemical-biological processes have the potential to enhance the carbon and energy recovery from organic waste. This work aimed to assess the carbon and energy recovery potential of multifunctional processes to simultaneously sequestrate syngas and detoxify pyrolysis aqueous condensate (PAC) for short-chain carboxylates production. To evaluate relevant process parameters for mixed culture co-fermentation of syngas and PAC, two identical reactors were run under mesophilic (37 °C) and thermophilic (55 °C) conditions at increasing PAC loading rates. Both the mesophilic and the thermophilic process recovered at least 50% of the energy in syngas and PAC into short-chain carboxylates. During the mesophilic syngas and PAC co-fermentation, methanogenesis was completely inhibited while acetate, ethanol and butyrate were the primary metabolites. Over 90% of the amplicon sequencing variants based on 16S rRNA were assigned to Clostridium sensu stricto 12. During the thermophilic process, on the other hand, Symbiobacteriales, Syntrophaceticus, Thermoanaerobacterium, Methanothermobacter and Methanosarcina likely played crucial roles in aromatics degradation and methanogenesis, respectively, while Moorella thermoacetica and Methanothermobacter marburgensis were the predominant carboxydotrophs in the thermophilic process. High biomass concentrations were necessary to maintain stable process operations at high PAC loads. In a second-stage reactor, Aspergillus oryzae converted acetate, propionate and butyrate from the first stage into L-malate, confirming the successful detoxification of PAC below inhibitory levels. The highest L-malate yield was 0.26 ± 2.2 molL-malate/molcarboxylates recorded for effluent from the mesophilic process at a PAC load of 4% v/v. The results highlight the potential of multifunctional reactors where anaerobic mixed cultures perform simultaneously diverse process roles, such as carbon fixation, wastewater detoxification and carboxylates intermediate production. The recovered energy in the form of intermediate carboxylates allows for their use as substrates in subsequent fermentative stages.
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Affiliation(s)
- Alberto Robazza
- Institute of Process Engineering in Life Sciences 2: Electro Biotechnology, Karlsruhe Institute of Technology - KIT, 76131, Karlsruhe, Germany
| | - Flávio C F Baleeiro
- Department of Microbial Biotechnology, Helmholtz Centre for Environmental Research - UFZ, 04318, Leipzig, Germany
| | - Sabine Kleinsteuber
- Department of Microbial Biotechnology, Helmholtz Centre for Environmental Research - UFZ, 04318, Leipzig, Germany
| | - Anke Neumann
- Institute of Process Engineering in Life Sciences 2: Electro Biotechnology, Karlsruhe Institute of Technology - KIT, 76131, Karlsruhe, Germany.
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Zeng Y, Zheng D, Li LP, Wang M, Gou M, Kamagata Y, Chen YT, Nobu MK, Tang YQ. Metabolism of novel potential syntrophic acetate-oxidizing bacteria in thermophilic methanogenic chemostats. Appl Environ Microbiol 2024; 90:e0109023. [PMID: 38259075 PMCID: PMC10880629 DOI: 10.1128/aem.01090-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Accepted: 12/19/2023] [Indexed: 01/24/2024] Open
Abstract
Acetate is a major intermediate in the anaerobic digestion of organic waste to produce CH4. In methanogenic systems, acetate degradation is carried out by either acetoclastic methanogenesis or syntrophic degradation by acetate oxidizers and hydrogenotrophic methanogens. Due to challenges in the isolation of syntrophic acetate-oxidizing bacteria (SAOB), the diversity and metabolism of SAOB and the mechanisms of their interactions with methanogenic partners are not fully characterized. In this study, the in situ activity and metabolic characteristics of potential SAOB and their interactions with methanogens were elucidated through metagenomics and metatranscriptomics. In addition to the reported SAOB classified in the genera Tepidanaerobacter, Desulfotomaculum, and Thermodesulfovibrio, we identified a number of potential SAOB that are affiliated with Clostridia, Thermoanaerobacteraceae, Anaerolineae, and Gemmatimonadetes. The potential SAOB possessing the glycine-mediated acetate oxidation pathway dominates SAOB communities. Moreover, formate appeared to be the main product of the acetate degradation by the most active potential SAOB. We identified the methanogen partner of these potential SAOB in the acetate-fed chemostat as Methanosarcina thermophila. The dominated potential SAOB in each chemostat had similar metabolic characteristics, even though they were in different fatty-acid-fed chemostats. These novel syntrophic lineages are prevalent and may play critical roles in thermophilic methanogenic reactors. This study expands our understanding of the phylogenetic diversity and in situ biological functions of uncultured syntrophic acetate degraders and presents novel insights into how they interact with methanogens.IMPORTANCECombining reactor operation with omics provides insights into novel uncultured syntrophic acetate degraders and how they perform in thermophilic anaerobic digesters. This improves our understanding of syntrophic acetate degradation and contributes to the background knowledge necessary to better control and optimize anaerobic digestion processes.
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Affiliation(s)
- Yan Zeng
- Institute of New Energy and Low-carbon Technology, Sichuan University, Chengdu, Sichuan, China
| | - Dan Zheng
- College of Architecture and Environment, Sichuan University, Chengdu, Sichuan, China
| | - Lan-Peng Li
- Sinopec (Dalian) Research Institute of Petroleum and Petrochemicals Co. Ltd., Dalian, Liaoning, China
| | - Miaoxiao Wang
- College of Architecture and Environment, Sichuan University, Chengdu, Sichuan, China
| | - Min Gou
- College of Architecture and Environment, Sichuan University, Chengdu, Sichuan, China
| | - Yoichi Kamagata
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Ya-Ting Chen
- College of Architecture and Environment, Sichuan University, Chengdu, Sichuan, China
| | - Masaru Konishi Nobu
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa, Japan
| | - Yue-Qin Tang
- Institute of New Energy and Low-carbon Technology, Sichuan University, Chengdu, Sichuan, China
- College of Architecture and Environment, Sichuan University, Chengdu, Sichuan, China
- Engineering Research Centre of Alternative Energy Materials and Devices, Ministry of Education, Chengdu, Sichuan, China
- Sichuan Environmental Protection Key Laboratory of Organic Wastes Valorisation, Chengdu, Sichuan, China
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Struckmann Poulsen J, Trueba Santiso A, Lema JM, Gregersen Echers S, Wimmer R, Lund Nielsen J. Assessing labelled carbon assimilation from poly butylene adipate-co-terephthalate (PBAT) monomers during thermophilic anaerobic digestion. BIORESOURCE TECHNOLOGY 2023:129430. [PMID: 37399952 DOI: 10.1016/j.biortech.2023.129430] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2023] [Revised: 06/26/2023] [Accepted: 06/28/2023] [Indexed: 07/05/2023]
Abstract
PBAT (poly butylene adipate-co-terephthalate) is a widely used biodegradable plastic, but the knowledge about its metabolization in anaerobic environments is very limited. In this study, the anaerobic digester sludge from a municipal wastewater treatment plant was used as inoculum to investigate the biodegradability of PBAT monomers in thermophilic conditions. The research employs a combination of 13C-labelled monomers and proteogenomics to track the labelled carbon and identify the microorganisms involved. A total of 122 labelled peptides of interest were identified for adipic acid (AA) and 1,4-butanedio (BD). Through the time-dependent isotopic enrichment and isotopic profile distributions, Bacteroides, Ichthyobacterium, and Methanosarcina were proven to be directly involved in the metabolization of at least one monomer. This study provides a first insight into the identity and genomic potential of microorganisms responsible for biodegradability of PBAT monomers during anaerobic digestion under thermophilic conditions.
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Affiliation(s)
- Jan Struckmann Poulsen
- Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg E, Denmark
| | - Alba Trueba Santiso
- Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg E, Denmark; CRETUS, Department of Chemical Engineering, University of Santiago de Compostela, Campus Vida, 15782 Santiago de Compostela, Galicia, Spain
| | - Juan M Lema
- CRETUS, Department of Chemical Engineering, University of Santiago de Compostela, Campus Vida, 15782 Santiago de Compostela, Galicia, Spain
| | - Simon Gregersen Echers
- Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg E, Denmark
| | - Reinhard Wimmer
- Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg E, Denmark
| | - Jeppe Lund Nielsen
- Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg E, Denmark.
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de Carvalho JC, de Souza Vandenberghe LP, Sydney EB, Karp SG, Magalhães AI, Martinez-Burgos WJ, Medeiros ABP, Thomaz-Soccol V, Vieira S, Letti LAJ, Rodrigues C, Woiciechowski AL, Soccol CR. Biomethane Production from Sugarcane Vinasse in a Circular Economy: Developments and Innovations. FERMENTATION-BASEL 2023. [DOI: 10.3390/fermentation9040349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
Abstract
Sugarcane ethanol production generates about 360 billion liters of vinasse, a liquid effluent with an average chemical oxygen demand of 46,000 mg/L. Vinasse still contains about 11% of the original energy from sugarcane juice, but this chemical energy is diluted. This residue, usually discarded or applied in fertigation, is a suitable substrate for anaerobic digestion (AD). Although the technology is not yet widespread—only 3% of bioethanol plants used it in Brazil in the past, most discontinuing the process—the research continues. With a biomethane potential ranging from 215 to 324 L of methane produced by kilogram of organic matter in vinasse, AD could improve the energy output of sugarcane biorefineries. At the same time, the residual digestate could still be used as an agricultural amendment or for microalgal production for further stream valorization. This review presents the current technology for ethanol production from sugarcane and describes the state of the art in vinasse AD, including technological trends, through a recent patent evaluation. It also appraises the integration of vinasse AD in an ideal sugarcane biorefinery approach. It finally discusses bottlenecks and presents possible directions for technology development and widespread adoption of this simple yet powerful approach for bioresource recovery.
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Affiliation(s)
- Júlio Cesar de Carvalho
- Department of Bioprocess Engineering and Biotechnology, Centro Politécnico, Federal University of Paraná, Curitiba 81531-990, PR, Brazil
| | | | - Eduardo Bittencourt Sydney
- Department of Bioprocess Engineering and Biotechnology, Federal University of Technology—Paraná, Ponta Grossa 84016-210, PR, Brazil
| | - Susan Grace Karp
- Department of Bioprocess Engineering and Biotechnology, Centro Politécnico, Federal University of Paraná, Curitiba 81531-990, PR, Brazil
| | - Antonio Irineudo Magalhães
- Department of Bioprocess Engineering and Biotechnology, Centro Politécnico, Federal University of Paraná, Curitiba 81531-990, PR, Brazil
| | - Walter José Martinez-Burgos
- Department of Bioprocess Engineering and Biotechnology, Centro Politécnico, Federal University of Paraná, Curitiba 81531-990, PR, Brazil
| | - Adriane Bianchi Pedroni Medeiros
- Department of Bioprocess Engineering and Biotechnology, Centro Politécnico, Federal University of Paraná, Curitiba 81531-990, PR, Brazil
| | - Vanete Thomaz-Soccol
- Department of Bioprocess Engineering and Biotechnology, Centro Politécnico, Federal University of Paraná, Curitiba 81531-990, PR, Brazil
| | - Sabrina Vieira
- Department of Bioprocess Engineering and Biotechnology, Federal University of Technology—Paraná, Ponta Grossa 84016-210, PR, Brazil
| | - Luiz Alberto Junior Letti
- Department of Bioprocess Engineering and Biotechnology, Centro Politécnico, Federal University of Paraná, Curitiba 81531-990, PR, Brazil
| | - Cristine Rodrigues
- Department of Bioprocess Engineering and Biotechnology, Centro Politécnico, Federal University of Paraná, Curitiba 81531-990, PR, Brazil
| | - Adenise Lorenci Woiciechowski
- Department of Bioprocess Engineering and Biotechnology, Centro Politécnico, Federal University of Paraná, Curitiba 81531-990, PR, Brazil
| | - Carlos Ricardo Soccol
- Department of Bioprocess Engineering and Biotechnology, Centro Politécnico, Federal University of Paraná, Curitiba 81531-990, PR, Brazil
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Dzofou Ngoumelah D, Harnisch F, Sulheim S, Heggeset TMB, Aune IH, Wentzel A, Kretzschmar J. A unified and simple medium for growing model methanogens. Front Microbiol 2023; 13:1046260. [PMID: 36704566 PMCID: PMC9871610 DOI: 10.3389/fmicb.2022.1046260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Accepted: 12/12/2022] [Indexed: 01/11/2023] Open
Abstract
Apart from their archetypic use in anaerobic digestion (AD) methanogenic archaea are targeted for a wide range of applications. Using different methanogenic archaea for one specific application requires the optimization of culture media to enable the growth of different strains under identical environmental conditions, e.g., in microbial electrochemical technologies (MET) for (bio)electromethanation. Here we present a new culture medium (BFS01) adapted from the DSM-120 medium by omitting resazurin, yeast extract, casitone, and using a low salt concentration, that was optimized for Methanosarcina barkeri, Methanobacterium formicicum, and Methanothrix soehngenii. The aim was to provide a medium for follow-up co-culture studies using specific methanogens and Geobacter spp. dominated biofilm anodes. All three methanogens showed growth and activity in the BFS01 medium. This was demonstrated by estimating the specific growth rates ( μ ) and doubling times (t d ) of each methanogen. The μ andt d based on methane accumulation in the headspace showed values consistent with literature values for M. barkeri and M. soehngenii. However, μ andt d based on methane accumulation in the headspace differed from literature data for M. formicicum but still allowed sufficient growth. The lowered salt concentration and the omission of chemically complex organic components in the medium may have led to the observed deviation from μ andt d for M. formicicum as well as the changed morphology. 16S rRNA gene-based amplicon sequencing and whole genome nanopore sequencing further confirmed purity and species identity.
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Affiliation(s)
- Daniel Dzofou Ngoumelah
- Biochemical Conversion Department, DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH, Leipzig, Germany
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Falk Harnisch
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Snorre Sulheim
- Department of Biotechnology and Nanomedicine, SINTEF Industry, Trondheim, Norway
| | | | - Ingvild Haugnes Aune
- Department of Biotechnology and Nanomedicine, SINTEF Industry, Trondheim, Norway
| | - Alexander Wentzel
- Department of Biotechnology and Nanomedicine, SINTEF Industry, Trondheim, Norway
| | - Jörg Kretzschmar
- Biochemical Conversion Department, DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH, Leipzig, Germany
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Blasco L, Kahala M, Ervasti S, Tampio E. Dynamics of microbial community in response to co-feedstock composition in anaerobic digestion. BIORESOURCE TECHNOLOGY 2022; 364:128039. [PMID: 36182013 DOI: 10.1016/j.biortech.2022.128039] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 09/22/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
To enable the utilization of seasonal biomasses in e.g., farm-scale biogas plants, the process should be flexible and ensure stable gas production. However, information about microbial community dynamics in long-term co-digestion with versatile co-feedstocks is lacking. This study investigated the effects of co-feedstock changes on the performance and evolution of microbial consortia during 428-day anaerobic digestion of cow slurry. Co-feedstocks consisted of hydrocarbon-, protein- and lipid-rich materials. A high throughput 16S ribosomal RNA gene sequencing was used to analyze the taxonomic profile of microbial communities. Due to the low loading rate, the changes were subtle in bacteria, but a shift on archaeal genera in response to different and changing feedstock compositions was observed. Despite drastic changes in co-feedstock composition, stable and flexible anaerobic digestion with relatively constant core microbiome can be achieved with cautious operation of the process.
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Affiliation(s)
- Lucia Blasco
- Natural Resources Institute Finland (Luke), Production Systems, Myllytie 1, FI-31600 Jokioinen, Finland.
| | - Minna Kahala
- Natural Resources Institute Finland (Luke), Production Systems, Myllytie 1, FI-31600 Jokioinen, Finland
| | - Satu Ervasti
- Natural Resources Institute Finland (Luke), Production Systems, Ounasjoentie 6, FI-96200 Rovaniemi, Finland
| | - Elina Tampio
- Natural Resources Institute Finland (Luke), Production Systems, Latokartanonkaari 9, FI-00790 Helsinki, Finland
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Long-Term, Simultaneous Impact of Antimicrobials on the Efficiency of Anaerobic Digestion of Sewage Sludge and Changes in the Microbial Community. ENERGIES 2022. [DOI: 10.3390/en15051826] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The aim of this study was to evaluate the influence of simultaneous, long-term exposure to increasing concentrations of three classes of antimicrobials (β-lactams, fluoroquinolones and nitroimidazoles) on: (1) the efficiency of anaerobic digestion of sewage sludge, (2) qualitative and quantitative changes in microbial consortia that participate in methane fermentation, and (3) fate of antibiotic resistance genes (ARGs). Long-term supplementation of sewage sludge with a combination of metronidazole, amoxicillin and ciprofloxacin applied at different doses did not induce significant changes in process parameters, including the concentrations of volatile fatty acids (VFAs), or the total abundance of ARGs. Exposure to antibiotics significantly decreased methane production and modified microbial composition. The sequencing analysis revealed that the abundance of OTUs characteristic of Archaea was not correlated with the biogas production efficiency. The study also demonstrated that the hydrogen-dependent pathway of methylotrophic methanogenesis could significantly contribute to the stability of anaerobic digestion in the presence of antimicrobials. The greatest changes in microbial biodiversity were noted in substrate samples exposed to the highest dose of the tested antibiotics, relative to control. The widespread use of antimicrobials increases antibiotic concentrations in sewage sludge, which may decrease the efficiency of anaerobic digestion, and contribute to the spread of antibiotic resistance (AR).
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Dynamics of Microbial Communities during the Removal of Copper and Zinc in a Sulfate-Reducing Bioreactor with a Limestone Pre-Column System. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:ijerph19031484. [PMID: 35162506 PMCID: PMC8835105 DOI: 10.3390/ijerph19031484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 01/15/2022] [Accepted: 01/25/2022] [Indexed: 11/30/2022]
Abstract
Biological treatment using sulfate-reducing bacteria (SRB) is a promising approach to remediate acid rock drainage (ARD). Our purpose was to assess the performance of a sequential system consisting of a limestone bed filter followed by a sulfate-reducing bioreactor treating synthetic ARD for 375 days and to evaluate changes in microbial composition. The treatment system was effective in increasing the pH of the ARD from 2.7 to 7.5 and removed total Cu(II) and Zn(II) concentrations by up to 99.8% and 99.9%, respectively. The presence of sulfate in ARD promoted sulfidogenesis and changed the diversity and structure of the microbial communities. Methansarcina spp. was the most abundant amplicon sequence variant (ASV); however, methane production was not detected. Biodiversity indexes decreased over time with the bioreactor operation, whereas SRB abundance remained stable. Desulfobacteraceae, Desulfocurvus, Desulfobulbaceae and Desulfovibrio became more abundant, while Desulfuromonadales, Desulfotomaculum and Desulfobacca decreased. Geobacter and Syntrophobacter were enriched with bioreactor operation time. At the beginning, ASVs with relative abundance <2% represented 65% of the microbial community and 21% at the end of the study period. Thus, the results show that the microbial community gradually lost diversity while the treatment system was highly efficient in remediating ARD.
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Li Y, Ni J, Cheng H, Zhu A, Guo G, Qin Y, Li YY. Methanogenic performance and microbial community during thermophilic digestion of food waste and sewage sludge in a high-solid anaerobic membrane bioreactor. BIORESOURCE TECHNOLOGY 2021; 342:125938. [PMID: 34547708 DOI: 10.1016/j.biortech.2021.125938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 09/04/2021] [Accepted: 09/08/2021] [Indexed: 06/13/2023]
Abstract
The methanogenic performance and microbial community of the thermophilic anaerobic mono-digestion and co-digestion of food waste and sewage sludge in a high-solid membrane bioreactor were investigated by a continuous experiment. The methane recovery rate of the system reached 98.0% and 89.0% when the substrate was pure food waste and 25% sewage sludge substitution, respectively. Kinetics characterization showed that hydrolysis was the rate-limiting step in both mono-digestion and co-digestion while methanogenic performance and microbial community were significantly affected by feed condition. The dominant archaea for methane generation shifted from Methanothermobacter thermophilus (72.82%) to Methanosarcina thermophila (96.25%) with sewage sludge gradually added from 0% to 100% in the substrate. The relationships between digestion performance, such as the accumulation of soluble proteins in the reactor, and functional microbial groups were also carefully analyzed. Finally, reasonable metabolic pathways for mono-digestion and co-digestion were summarized.
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Affiliation(s)
- Yemei Li
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, 6-6-06 Aoba, Aramaki-Aza, Sendai, Miyagi 980-8579, Japan
| | - Jialing Ni
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, 6-6-06 Aoba, Aramaki-Aza, Sendai, Miyagi 980-8579, Japan; Department of Chemical Engineering, Graduate School of Engineering, Tohoku University, 6-6-07 Aoba, Aramaki-Aza, Sendai, Miyagi 980-8579, Japan
| | - Hui Cheng
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, 6-6-06 Aoba, Aramaki-Aza, Sendai, Miyagi 980-8579, Japan
| | - Aijun Zhu
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, 6-6-06 Aoba, Aramaki-Aza, Sendai, Miyagi 980-8579, Japan
| | - Guangze Guo
- Department of Frontier Science for Advanced Environment, Graduate School of Environmental Sciences, Tohoku University, 6-6-20 Aoba, Aramaki-Aza, Sendai, Miyagi 980-8579, Japan
| | - Yu Qin
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, 6-6-06 Aoba, Aramaki-Aza, Sendai, Miyagi 980-8579, Japan
| | - Yu-You Li
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, 6-6-06 Aoba, Aramaki-Aza, Sendai, Miyagi 980-8579, Japan; Department of Frontier Science for Advanced Environment, Graduate School of Environmental Sciences, Tohoku University, 6-6-20 Aoba, Aramaki-Aza, Sendai, Miyagi 980-8579, Japan.
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12
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Yan M, Zhu X, Treu L, Ravenni G, Campanaro S, Goonesekera EM, Ferrigno R, Jacobsen CS, Zervas A, Angelidaki I, Fotidis IA. Comprehensive evaluation of different strategies to recover methanogenic performance in ammonia-stressed reactors. BIORESOURCE TECHNOLOGY 2021; 336:125329. [PMID: 34052546 DOI: 10.1016/j.biortech.2021.125329] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Revised: 05/20/2021] [Accepted: 05/21/2021] [Indexed: 06/12/2023]
Abstract
In this study, strategies for recovery of ammonia-stressed AD reactors were attempted, by addition of preserved bioaugmentation consortium in gel (BioG), fresh consortium in liquid medium (BioL), woodchip biochar (BW), and straw biochar (BS). In comparison to control group with ammonia, effective treatments, i.e., BioG, BioL, BW and BS raised the maximum methane production rate by 77%, 23%, 35%, and 24%, respectively. BW possibly acted as interspecies electrical conduits for Direct Electron Transfer based on conductivity and SEM analysis. BioG facilitated slow release of bioaugmentation inocula from gel into the AD system, which protected them from a direct environmental shock. According to microbial analysis, both BioG, BioL and BW resulted in increased relative abundance of Methanothermobacter thermautotrophicus; and BS induced selective raise of Methanosarcina thermophila. The increase of methanogens via these strategies led to the faster recovery of the AD process.
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Affiliation(s)
- Miao Yan
- Department of Environmental Engineering, Technical University of Denmark, Building 115, Kgs. Lyngby DK-2800, Denmark
| | - Xinyu Zhu
- Department of Chemical and Biochemical Engineering, Technical University of Denmark, Building 227, Kgs. Lyngby DK-2800, Denmark
| | - Laura Treu
- Department of Biology, University of Padova, Via U. Bassi 58/b, Padova 35121, Italy
| | - Giulia Ravenni
- Department of Chemical and Biochemical Engineering, Technical University of Denmark, Building 313, Roskilde 4000, Denmark
| | - Stefano Campanaro
- Department of Biology, University of Padova, Via U. Bassi 58/b, Padova 35121, Italy
| | - Estelle Maria Goonesekera
- Department of Environmental Engineering, Technical University of Denmark, Building 115, Kgs. Lyngby DK-2800, Denmark
| | - Rosa Ferrigno
- Department of Environmental Engineering, Technical University of Denmark, Building 115, Kgs. Lyngby DK-2800, Denmark
| | - Carsten S Jacobsen
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, Roskilde DK-4000, Denmark
| | - Athanasios Zervas
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, Roskilde DK-4000, Denmark
| | - Irini Angelidaki
- Department of Chemical and Biochemical Engineering, Technical University of Denmark, Building 227, Kgs. Lyngby DK-2800, Denmark
| | - Ioannis A Fotidis
- Department of Environmental Engineering, Technical University of Denmark, Building 115, Kgs. Lyngby DK-2800, Denmark; Faculty of Engineering and Natural Sciences, Tampere University, Tampere, Finland; School of Civil Engineering Southeast University Nanjing, 210096, China.
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13
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Chuphal N, Singha KP, Sardar P, Sahu NP, Shamna N, Kumar V. Scope of Archaea in Fish Feed: a New Chapter in Aquafeed Probiotics? Probiotics Antimicrob Proteins 2021; 13:1668-1695. [PMID: 33821466 DOI: 10.1007/s12602-021-09778-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/15/2021] [Indexed: 12/21/2022]
Abstract
The outbreak of diseases leading to substantial loss is a major bottleneck in aquaculture. Over the last decades, the concept of using feed probiotics was more in focus to address the growth and health of cultivable aquatic organisms. The objective of this review is to provide an overview of the distinct functionality of archaea from conventional probiotics in nutrient utilization, specific caloric contribution, evading immune response and processing thermal resistance. The prime limitation of conventional probiotics is the viability of desired microbes under harsh feed processing conditions. To overcome the constraints of commercial probiotics pertaining to incompatibility towards industrial processing procedure, a super microbe, archaea, appears to be a potential alternative approach in aquaculture. The peculiarity of the archaeal cell wall provides them with heat stability and rigidity under industrial processing conditions. Besides, archaea being one of the gut microbial communities participates in various health-oriented biological functions in animals. Thus, the current review devoted that administration of archaea in aquafeed could be a promising strategy in aquaculture. Archaea may be used as a potential probiotic with the possible modes of functions and advantages over conventional probiotics in aquafeed preparation. The present review also provides the challenges associated with the use of archaea for aquaculture and a brief outline of the patents on archaea to highlight the various use of archaea in different sectors.
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Affiliation(s)
- Nisha Chuphal
- Fish Nutrition, Biochemistry and Physiology Division, ICAR-Central Institute of Fisheries Education, Versova, Mumbai, 400 061, India
| | - Krishna Pada Singha
- Fish Nutrition, Biochemistry and Physiology Division, ICAR-Central Institute of Fisheries Education, Versova, Mumbai, 400 061, India.,Aquaculture Research Institute, Department of Animal Veterinary and Food Sciences, University of Idaho, Moscow, ID, 83844-3020, USA
| | - Parimal Sardar
- Fish Nutrition, Biochemistry and Physiology Division, ICAR-Central Institute of Fisheries Education, Versova, Mumbai, 400 061, India.
| | - Narottam Prasad Sahu
- Fish Nutrition, Biochemistry and Physiology Division, ICAR-Central Institute of Fisheries Education, Versova, Mumbai, 400 061, India
| | - Naseemashahul Shamna
- Fish Nutrition, Biochemistry and Physiology Division, ICAR-Central Institute of Fisheries Education, Versova, Mumbai, 400 061, India
| | - Vikas Kumar
- Aquaculture Research Institute, Department of Animal Veterinary and Food Sciences, University of Idaho, Moscow, ID, 83844-3020, USA.
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14
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Kroeger ME, Meredith LK, Meyer KM, Webster KD, de Camargo PB, de Souza LF, Tsai SM, van Haren J, Saleska S, Bohannan BJM, Rodrigues JLM, Berenguer E, Barlow J, Nüsslein K. Rainforest-to-pasture conversion stimulates soil methanogenesis across the Brazilian Amazon. THE ISME JOURNAL 2021; 15:658-672. [PMID: 33082572 PMCID: PMC8027882 DOI: 10.1038/s41396-020-00804-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 09/03/2020] [Accepted: 10/02/2020] [Indexed: 01/30/2023]
Abstract
The Amazon rainforest is a biodiversity hotspot and large terrestrial carbon sink threatened by agricultural conversion. Rainforest-to-pasture conversion stimulates the release of methane, a potent greenhouse gas. The biotic methane cycle is driven by microorganisms; therefore, this study focused on active methane-cycling microorganisms and their functions across land-use types. We collected intact soil cores from three land use types (primary rainforest, pasture, and secondary rainforest) of two geographically distinct areas of the Brazilian Amazon (Santarém, Pará and Ariquemes, Rondônia) and performed DNA stable-isotope probing coupled with metagenomics to identify the active methanotrophs and methanogens. At both locations, we observed a significant change in the composition of the isotope-labeled methane-cycling microbial community across land use types, specifically an increase in the abundance and diversity of active methanogens in pastures. We conclude that a significant increase in the abundance and activity of methanogens in pasture soils could drive increased soil methane emissions. Furthermore, we found that secondary rainforests had decreased methanogenic activity similar to primary rainforests, and thus a potential to recover as methane sinks, making it conceivable for forest restoration to offset greenhouse gas emissions in the tropics. These findings are critical for informing land management practices and global tropical rainforest conservation.
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Affiliation(s)
- Marie E. Kroeger
- grid.266683.f0000 0001 2184 9220Department of Microbiology, University of Massachusetts Amherst, Amherst, MA USA ,grid.148313.c0000 0004 0428 3079Present Address: Bioenergy and Biome Sciences, Los Alamos National Laboratory, Los Alamos, NM USA
| | - Laura K. Meredith
- grid.134563.60000 0001 2168 186XSchool of Natural Resources and the Environment, University of Arizona, Tucson, AZ USA ,grid.134563.60000 0001 2168 186XBiosphere 2, University of Arizona, Tucson, AZ USA
| | - Kyle M. Meyer
- grid.170202.60000 0004 1936 8008Institute of Ecology and Evolution, University of Oregon, Eugene, OR USA ,grid.47840.3f0000 0001 2181 7878Department of Integrative Biology, University of California–Berkeley, Berkeley, CA USA
| | - Kevin D. Webster
- grid.423138.f0000 0004 0637 3991Planetary Science Institute, Tucson, AZ USA
| | - Plinio Barbosa de Camargo
- grid.11899.380000 0004 1937 0722Center for Nuclear Energy in Agriculture, University of São Paulo, São Paulo, SP Brazil
| | - Leandro Fonseca de Souza
- grid.11899.380000 0004 1937 0722Center for Nuclear Energy in Agriculture, University of São Paulo, São Paulo, SP Brazil
| | - Siu Mui Tsai
- grid.11899.380000 0004 1937 0722Center for Nuclear Energy in Agriculture, University of São Paulo, São Paulo, SP Brazil
| | - Joost van Haren
- grid.134563.60000 0001 2168 186XBiosphere 2, University of Arizona, Tucson, AZ USA ,grid.134563.60000 0001 2168 186XHonors College, University of Arizona, Tucson, AZ USA
| | - Scott Saleska
- grid.134563.60000 0001 2168 186XDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ USA
| | - Brendan J. M. Bohannan
- grid.170202.60000 0004 1936 8008Institute of Ecology and Evolution, University of Oregon, Eugene, OR USA
| | - Jorge L. Mazza Rodrigues
- grid.27860.3b0000 0004 1936 9684Department of Land, Air and Water Resources, University of California, Davis, CA USA
| | - Erika Berenguer
- grid.9835.70000 0000 8190 6402Lancaster Environment Centre, Lancaster University, Lancaster, UK ,grid.4991.50000 0004 1936 8948Environmental Change Institute, University of Oxford, Oxford, UK
| | - Jos Barlow
- grid.9835.70000 0000 8190 6402Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | - Klaus Nüsslein
- grid.266683.f0000 0001 2184 9220Department of Microbiology, University of Massachusetts Amherst, Amherst, MA USA
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15
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Sasaki K, Sasaki D, Tsuge Y, Morita M, Kondo A. Enhanced methane production from cellulose using a two-stage process involving a bioelectrochemical system and a fixed film reactor. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:7. [PMID: 33407783 PMCID: PMC7789537 DOI: 10.1186/s13068-020-01866-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Accepted: 12/21/2020] [Indexed: 06/12/2023]
Abstract
BACKGROUND It is desirable to improve the anaerobic digestion processes of recalcitrant materials, such as cellulose. Enhancement of methane (CH4) production from organic molecules was previously accomplished through coupling a bioelectrochemical system (BES); however, scaling-up BES-based production is difficult. Here, we developed a two-stage process consisting of a BES using low-cost and low-reactive carbon sheets as the cathode and anode, and a fixed film reactor (FFR) containing conductive material, i.e., carbon fiber textiles (CFTs) (:BES → FFR). By controlling the cathodic current at 2.7 μA/cm2 without abiotic H2 production, the three-electrode BES system was operated to mimic a microbial electrolysis cell. RESULTS The thermophilic BES (inlet pH: 6.1) and FFR (inlet pH: 7.5) were operated using hydraulic retention times (HRTs) of 2.5 and 4.2 days, respectively, corresponding to a cellulose load of 3555.6 mg-carbon (C)/(L day). The BES → FFR process achieved a higher CH4 yield (37.5%) with 52.8 vol% CH4 in the product gas compared to the non-bioelectrochemical system (NBES) → FFR process, which showed a CH4 yield of 22.1% with 46.8 vol% CH4. The CH4 production rate (67.5 mM/day) obtained with the BER → FFR process was much higher than that obtained using electrochemical methanogenesis (0.27 mM/day). Application of the electrochemical system or CFTs improved the yields of CH4 with the NBES → FFR or BES → non-fixed film reactor process, respectively. Meta 16S rRNA sequencing revealed that putative cellulolytic bacteria (identified as Clostridium species) were present in the BES and NBES, and followed (BES→ and NBES→) FFR. Notably, H2-consuming methanogens, Methanobacterium sp. and Methanosarcina sp., showed increased relative abundances in the suspended fraction and attached fraction of (BES→) FFR, respectively, compared to that of (NBES→) FFR, although these methanogens were observed at trace levels in the BES and NBES. CONCLUSIONS These results indicate that bioelectrochemical preprocessing at a low current effectively induces interspecies H2 transfer in the FFR with conductive material. Sufficient electrochemical preprocessing was observed using a relatively short HRT. This type of two-stage process, BES → FFR, is useful for stabilization and improvement of the biogas (CH4) production from cellulosic material, and our results imply that the two-stage system developed here may be useful with other recalcitrant materials.
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Affiliation(s)
- Kengo Sasaki
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo, 657-8501, Japan.
| | - Daisuke Sasaki
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo, 657-8501, Japan
| | - Yota Tsuge
- Institute for Frontier Science Initiative, Kanazawa University, Kakuma-machi, Kanazawa, Ishikawa, 920-1192, Japan
| | - Masahiko Morita
- Environment Chemistry Sector, Environmental Science Research Laboratory, Central Research Institute of Electric Power Industry, 1646 Abiko, Abiko-shi, Chiba-ken, 270-1194, Japan
| | - Akihiko Kondo
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo, 657-8501, Japan
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
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16
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Mutschlechner M, Praeg N, Illmer P. Soil-Derived Inocula Enhance Methane Production and Counteract Common Process Failures During Anaerobic Digestion. Front Microbiol 2020; 11:572759. [PMID: 33193175 PMCID: PMC7606279 DOI: 10.3389/fmicb.2020.572759] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 09/14/2020] [Indexed: 02/01/2023] Open
Abstract
Although soil-borne methanogens are known to be highly diverse and adapted to extreme environments, their application as potential (anaerobic) inocula to improve anaerobic digestion has not been investigated until now. The present study aimed at evaluating if soil-derived communities can be beneficial for biogas (methane, CH4) production and endure unfavorable conditions commonly associated with digestion failure. Nine study sites were chosen and tested for suitability as inoculation sources to improve biogas production via in situ measurements (CH4 fluxes, physical and chemical soil properties, and abundance of methanogens) and during a series of anaerobic digestions with (a) combinations of both sterile or unsterile soil and diluted fermenter sludge, and (b) pH-, acetate-, propionate-, and ammonium-induced disturbance. Amplicon sequencing was performed to assess key microbial communities pivotal for successful biogas production. Four out of nine tested soil inocula exerted sufficient methanogenic activity and repeatedly allowed satisfactory CH4/biogas production even under deteriorated conditions. Remarkably, the significantly highest CH4 production was observed using unsterile soil combined with sterile sludge, which coincided with both a higher relative abundance of methanogens and predicted genes involved in CH4 metabolism in these variants. Different bacterial and archaeal community patterns depending on the soil/sludge combinations and disturbance variations were established and these patterns significantly impacted CH4 production. Methanosarcina spp. seemed to play a key role in CH4 formation and prevailed even under stressed conditions. Overall, the results provided evidence that soil-borne methanogens can be effective in enhancing digestion performance and stability and, thus, harbor vast potential for further exploitation.
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Affiliation(s)
| | - Nadine Praeg
- Department of Microbiology, Universität Innsbruck, Innsbruck, Austria
| | - Paul Illmer
- Department of Microbiology, Universität Innsbruck, Innsbruck, Austria
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17
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Influence of Liquid-to-Gas Ratio on the Syngas Fermentation Efficiency: An Experimental Approach. Bioengineering (Basel) 2020; 7:bioengineering7040138. [PMID: 33142703 PMCID: PMC7712742 DOI: 10.3390/bioengineering7040138] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2020] [Revised: 10/16/2020] [Accepted: 10/27/2020] [Indexed: 11/17/2022] Open
Abstract
Syngas fermentation by methanogens is a novel process to purify biogas. Methanogens are able to ferment non-desirable CO2, H2, and CO to methane. However, to use methanogens on an industrial scale, more research has to be done. There are studies that discuss the growth of methanogens on syngas in combination with acetate. In this research, growth of methanogens on syngas as sole carbon source is discussed. Effluent of an anaerobic fed-batch was selectively cultivated with syngas in 400 mL Eppendorf© bioreactors. After a period of 7 days, fifteen 120 mL flasks were filled with three different liquid-to-gas ratios (1:1, 1:3, 1:5). Results showed that different liquid-to-gas ratios change the metabolic preference of the anaerobic microbial community. Moreover, complete conversion in a four-to-eight-day period, via the carboxidotrophic pathway, was observed in all three liquid-to-gas ratios.
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18
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Popall RM, Bolhuis H, Muyzer G, Sánchez-Román M. Stromatolites as Biosignatures of Atmospheric Oxygenation: Carbonate Biomineralization and UV-C Resilience in a Geitlerinema sp. - Dominated Culture. Front Microbiol 2020; 11:948. [PMID: 32508777 PMCID: PMC7248245 DOI: 10.3389/fmicb.2020.00948] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Accepted: 04/21/2020] [Indexed: 11/13/2022] Open
Abstract
Modern stromatolites are key to the record of past microbial activity preserved in fossil carbonate deposits. Mono-phototrophic cultures dominated by the cyanobacterium Geitlerinema sp. were obtained from a laboratory-maintained, low magnesium-calcite stromatolite originating from Lagoa Vermelha, Brazil. This lagoonal system has been described as a Precambrian analog, illustrating a period of photosynthetically induced atmospheric oxygenation, which created a global sanctuary from shortwave solar radiation and enabled the evolution of modern life on Earth. The enrichment cultures precipitate carbonates in minimal media, suggesting that cyanobacterial photosynthesis and extracellular polymeric substance production may be crucial in the mineralization of the studied stromatolite. We further show that Geitlerinema sp. can build and maintain filamentous mats under long-term UV-C exposure. Our results suggest that present day stromatolites dominated by cyanobacteria may be interpreted as biosignatures of atmospheric oxygenation and have implications for the search for putative biological traces on Mars.
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Affiliation(s)
- Rabja M. Popall
- Earth Sciences Department, Faculty of Science, Vrije Universiteit, Amsterdam, Netherlands
| | - Henk Bolhuis
- Marine Microbiology & Biogeochemistry Department, Royal Netherlands Institute for Sea Research, Utrecht University, Den Hoorn, Netherlands
| | - Gerard Muyzer
- Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands
| | - Mónica Sánchez-Román
- Earth Sciences Department, Faculty of Science, Vrije Universiteit, Amsterdam, Netherlands
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19
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Identification of novel potential acetate-oxidizing bacteria in thermophilic methanogenic chemostats by DNA stable isotope probing. Appl Microbiol Biotechnol 2019; 103:8631-8645. [DOI: 10.1007/s00253-019-10078-9] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Revised: 06/30/2019] [Accepted: 07/31/2019] [Indexed: 01/04/2023]
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20
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Wagner AO, Markt R, Mutschlechner M, Lackner N, Prem EM, Praeg N, Illmer P. Medium Preparation for the Cultivation of Microorganisms under Strictly Anaerobic/Anoxic Conditions. J Vis Exp 2019:10.3791/60155. [PMID: 31475968 PMCID: PMC6796894 DOI: 10.3791/60155] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
In contrast to aerobic organisms, strictly anaerobic microorganisms require the absence of oxygen and usually a low redox potential to initiate growth. As oxygen is ubiquitous in air, retaining O2-free conditions during all steps of cultivation is challenging but a prerequisite for anaerobic culturing. The protocol presented here demonstrates the successful cultivation of an anaerobic mixed culture derived from a biogas plant using a simple and inexpensive method. A precise description of the entire anoxic culturing process is given including media preparation, filling of cultivation flasks, supplementation with redox indicator and reducing agents to provide low redox potentials as well as exchanging the headspace to keep media free from oxygen. Furthermore, a detailed overview of aseptically inoculating gas tight serum flasks (by using sterile syringes and needles) and suitable incubation conditions is provided. The present protocol further deals with gas and liquid sampling for subsequent analyses regarding gas composition and volatile fatty acid concentrations using gas chromatography (GC) and high performance liquid chromatography (HPLC), respectively, and the calculation of biogas and methane yield considering the ideal gas law.
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Affiliation(s)
| | - Rudolf Markt
- Department of Microbiology, Universität Innsbruck
| | | | - Nina Lackner
- Department of Microbiology, Universität Innsbruck
| | - Eva M Prem
- Department of Microbiology, Universität Innsbruck
| | - Nadine Praeg
- Department of Microbiology, Universität Innsbruck
| | - Paul Illmer
- Department of Microbiology, Universität Innsbruck
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21
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Abstract
Microbial electrosynthesis (MES) biogas upgrading is done via reduction of carbon dioxide to methane through electroactive microbial catalysis. The baseline MES mode of operation showed about a 39% increase in the methane production rate compared to the open circuit mode of operation. MES is capable of producing acetic acid at relatively more negative potential (−0.80 to –0.90 V vs. Standard Hydrogen Electrode (SHE)) than the potential at which it produces methane (−0.65 V vs. SHE). The optimum pH for enhancing the electroactive acetogens is found to be around 6.8–7.0 while a pH of around 7.0–7.5 enhances the electroactive methanogens performance. The biocathode adaptation test reveals that 45% of the methane was produced through the electrochemical pathway with a coulombic efficiency of 100% while maintaining heterotrophic efficiency above 99%.
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