Chemobrionics: From Self-Assembled Material Architectures to the Origin of Life

Design of chemobrionic and biochemobrionic scaffolds for bone tissue engineering

Chemobrionic systems have attracted great attention in material science for development of novel biomimetic materials. This study aims to design a new bioactive material by integrating biosilica into chemobrionic structure, which will be called biochemobrionic, and to comparatively investigate the use of both chemobrionic and biochemobrionic materials as bone scaffolds. Biosilica, isolated from Amphora sp. diatom, was integrated into chemobrionic structure, and a comprehensive set of analysis was conducted to evaluate their morphological, chemical, mechanical, thermal, and biodegradation properties. Then, the effects of both scaffolds on cell biocompatibility and osteogenic differentiation capacity were assessed. Cells attached to the scaffolds, spread out, and covered the entire surface, indicating the absence of cytotoxicity. Biochemobrionic scaffold exhibited a higher level of mineralization and bone formation than the chemobrionic structure due to the osteogenic activity of biosilica. These results present a comprehensive and pioneering understanding of the potential of (bio)chemobrionics for bone regeneration.

Interface Engineering Enables Multilevel Resistive Switching in Ultra-Low-Power Chemobrionic Copper Silicate

Memristor is assuming prominence due to its exceptionally low power consumption, adaptable, and parallel signal processing capabilities that address the limitations of the von Neumann architecture to meet the growing demand for advanced technologies such as artificial intelligence, Internet of Things (IoTs), and neuromorphic computation. In this work, we demonstrate resistive switching in copper silicate-based hollow tube-forming self-organized membrane structures belonging to the category of chemobrionics or chemical gardens to demonstrate cost-effective and highly efficient memristor devices. The device architecture is configured as ITO/PEDOT:PSS/active layer (copper silicate)/PMMA/Ag, an arrangement that serves to stabilize current-voltage hysteresis and exhibit a low SET voltage ∼0.2 V with a 0.8 nJ power consumption while manifesting robust data endurance and multilevel resistive switching. The inherent self-rectifying behavior, characterized by a high rectification ratio of 60, underscores the potential utility of these devices across a spectrum of electronic applications. To emulate the functionality of biological synapses, fundamental synaptic characteristics are assessed, including paired-pulse facilitation (PPF) and potentiation and depression (P&D). We validate the potential of copper silicate chemical garden-based memristor devices for applications that require real-time synaptic processing. Importantly, the fabrication of these devices was accomplished through a comprehensive solution-based, low-temperature process conducted under ambient environmental conditions, obviating the need for specialized glovebox facilities.

Light-modulated colour transformation in highly intertwined vertically growing silver tungstate tubes

Achieving control over growth kinetics in chemical garden architectures is challenging due to the nonequilibrium conditions. In this study, we demonstrate the vertical growth of silver tungstate chemical garden tubes under both illuminated and dark conditions, a phenomenon not observed in a comparable silver-based system, specifically silver silicate, under light exposure. Physicochemical factors, viz. thermo chemical radius of the tungstate anion, its density-buoyancy relation, the osmotic pressure gradient, and the hydration enthalpy, contributed to the tube appearance in silver tungstate even in light. Tubes grown in light illumination were greyish black, while dark-grown tubes were creamy white, and both tubes appeared twisted and highly intertwined. The colour of the as obtained silver tungstate tubes could be transformed via exposure to light. In the presence of a strong oxidizing agent, the growing tubes retain the original creamy white colour even under illumination. Colour transformation in chemical garden tubes has not yet been observed, and this report could lead the way.

Comparative Evaluation of Chemical Garden Growth Techniques

Chemical gardens are an exciting area of self-organized precipitation structures that form nano- and micro-sized structures in different shapes. This field has attracted great interest from researchers due to the specific characteristics and potential applications of these structures. Today, research on chemical gardens has provided deeper information regarding the formation mechanisms of these structures, and several techniques have been developed for chemical garden growth. However, they all show different growth patterns and lead to the formation of structures with a variety of morphological, chemical, or physical properties. This study aimed to evaluate the effects of different production techniques on chemical garden growth, taking into consideration the growth patterns, morphology, microstructure, and chemical composition. The chemical garden structures obtained in seed and injection experiments, two common methods, showed highly similar surface structures, void formation, and chemical composition. The membrane growth method has a small number of applications; thus, it was comprehensively evaluated to add new insights to the existing limited data. It produced the most stable and standard structures in a flat sheet-like shape and showed different morphologies than those observed in other two methods. Overall, this study presented significant results about the effect of growth techniques on chemical garden structures and similar systems.

Pattern selection by material aging: Modeling chemical gardens in two and three dimensions

Chemical gardens are complex, often macroscopic, structures formed by precipitation reactions. Their thin walls compartmentalize the system and adjust in size and shape if the volume of the interior reactant solution is increased by osmosis or active injection. Spatial confinement to a thin layer is known to result in various patterns including self-extending filaments and flower-like patterns organized around a continuous, expanding front. Here, we describe a cellular automaton model for this type of self-organization, in which each lattice site is occupied by one of the two reactants or the precipitate. Reactant injection causes the random replacement of precipitate and generates an expanding near-circular precipitate front. If this process includes an age bias favoring the replacement of fresh precipitate, thin-walled filaments arise and grow-like in the experiments-at the leading tip. In addition, the inclusion of a buoyancy effect allows the model to capture various branched and unbranched chemical garden shapes in two and three dimensions. Our results provide a model of chemical garden structures and highlight the importance of temporal changes in the self-healing membrane material.

From Balloon to Crystalline Structure in the Calcium Phosphate Flow-Driven Chemical Garden

We have studied the calcium phosphate precipitation reaction by producing chemical gardens in a controlled manner using a three-dimensional flow-driven technique. The injection of the phosphate containing solution into the calcium ion reservoir has resulted in structures varying from membranes to crystals. Dynamical phase diagrams are constructed by varying chemical composition and flow rates from which three different growth mechanisms have been revealed. The microstructural analysis by scanning electron microscopy and powder X-ray diffraction confirmed the morphological transition from membrane tubes to crystalline branches upon decreasing pH.

Flow-driven synthesis of calcium phosphate-calcium alginate hybrid chemical gardens

Systems far-from-equilibrium self-assemble into spatiotemporal structures. Here, we report on the formation of calcium alginate gardens along with their inorganic hybrids when a sodium alginate solution containing sodium phosphate in various compositions is injected into a calcium chloride reservoir. The viscoelastic properties of the membranes developed are controlled by the injection rate, while their thickness by the amount of sodium phosphate besides diffusion. Inorganic hybrid membranes with constant thickness are synthesized in the presence of a sufficient amount of sodium phosphate. The electrochemical characterization of the membranes suggests that the driving force is the pH-gradient developing along the two sides; hence, the cell potential can be controlled by the addition of alkaline sodium phosphate into the sodium alginate solution.

Fabrication, modification and application of lipid nanotubes

The potential application of high aspect-ratio nanomaterials motivates the development of the fabrication and modification of lipid nanotubes(LNTs). To date, diverse fabricate processes and elaborate template procedures have produced suitable tubular architectures with definite dimensions and complex structures for expected functions and applications. Herein, we comprehensively summarize the fabrication of LNTs in vitro and discuss the progress made on the micro/nanomaterials fabrication using LNTs as a template, as well as the functions and possible application of a wide range of LNTs as fundamental or derivative material. In addition, the characteristics, advantages, and disadvantages of different fabrication, modification methods, and development prospects of LNTs were briefly summarized.

The Effect of the Presence of Amino Acids on the Precipitation of Inorganic Chemical-Garden Membranes: Biomineralization at the Origin of Life

If life developed in hydrothermal vents, it would have been within mineral membranes. The first proto-cells must have evolved to manipulate the mineral membranes that formed their compartments in order to control their metabolism. There must have occurred a biological takeover of the self-assembled mineral structures of the vents, with the incorporation of proto-biological molecules within the mineral membranes to alter their properties for life's purposes. Here, we study a laboratory analogue of this process: chemical-garden precipitation of the amino acids arginine and tryptophan with the metal salt iron chloride and sodium silicate. We produced these chemical gardens using different methodologies in order to determine the dependence of the morphology and chemistry on the growth conditions, as well as the effect of the amino acids on the formation of the iron-silicate chemical garden. We compared the effects of having amino acids initially within the forming chemical garden, corresponding to the internal zones of hydrothermal vents, or else outside, corresponding to the surrounding ocean. The characterization of the formed chemical gardens using X-ray diffraction, Fourier transform infrared spectroscopy, elemental analysis, and scanning electron microscopy demonstrates the presence of amino acids in these structures. The growth method in which the amino acid is initially in the tablet with the iron salt is that which generated chemical gardens with more amino acids in their structures.

Downward fingering accompanies upward tube growth in a chemical garden grown in a vertical confined geometry

Chemical gardens are self-assembled structures of mineral precipitates enabled by semi-permeable membranes. To explore the effects of gravity on the formation of chemical gardens, we have studied chemical gardens grown from cobalt chloride pellets and aqueous sodium silicate solution in a vertical Hele-Shaw cell. Through photography, we have observed and quantitatively analysed upward growing tubes and downward growing fingers. The latter were not seen in previous experimental studies involving similar physicochemical systems in 3-dimensional or horizontal confined geometry. To better understand the results, further studies of flow patterns, buoyancy forces, and growth dynamics under schlieren optics have been carried out, together with characterisation of the precipitates with scanning electron microscopy and X-ray diffractometry. In addition to an ascending flow and the resulting precipitation of tubular filaments, a previously not reported descending flow has been observed which, under some conditions, is accompanied by precipitation of solid fingering structures. We conclude that the physics of both the ascending and descending flows are shaped by buoyancy, together with osmosis and chemical reaction. The existence of the descending flow might highlight a limitation in current experimental methods for growing chemical gardens under gravity, where seeds are typically not suspended in the middle of the solution and are confined by the bottom of the vessel.

Development of a Controlled Injection Method Using Support Templates for the Production of Chemobrionic Materials

Chemobrionics is a research field about the well-known self-organized inorganic structures. Numerous research works have focused on controlling their growth pattern and characteristic features. In the present study, a controlled injection method is proposed to produce more regular self-assembled chemobrionics compared to the standard direct injection technique. This method involves the injection of a metal salt solution into an agarose support template filled with an anionic solution. The obtained structures were studied by scanning electron microscopy, X-ray microtomography, X-ray photoelectron spectroscopy, Raman spectroscopy, Fourier-transform IR spectroscopy, and thermogravimetric analysis. Despite the complex mechanism and chemistry underlying the self-organization phenomena, the controlled injection method enabled the generation of regular standard chemobrionic structures with high experimental reproducibility. It provided the extraction of tubular structures from the reaction vessel without breakage, thus allowing comprehensive characterization. Furthermore, the morphological, chemical, and thermal features of these structures were highly correlated with the standard chemobrionics obtained in the direct injection method. The proposed controlled injection method holds great promise for understanding and controlling the properties of chemobrionics and related structures.

Self-Assembled Structures Formed in CO2-Enriched Atmospheres: A Case-Study for Martian Biomimetic Forms

The aim of this study was to investigate the biomimetic precipitation processes that follow the chemical-garden reaction of brines of CaCl₂ and sulfate salts with silicate in alkaline conditions under a Mars-type CO₂-rich atmosphere. We characterize the precipitates with environmental scanning electron microscope micrography, micro-Raman spectroscopy, and X-ray diffractometry. Our analysis results indicate that self-assembled carbonate structures formed with calcium chloride can have vesicular and filamentary features. With magnesium sulfate as a reactant a tentative assignment with Raman spectroscopy indicates the presence of natroxalate in the precipitate. These morphologies and compounds appear through rapid sequestration of atmospheric CO₂ by alkaline solutions of silica and salts.

Pattern selection of directionally oriented chitosan tubes

The growth of viscoelastic curved materials, inspired by biological systems, may give rise to various complex structures. One of the simplest ways to control the pattern formation is to vary the orientation of the reaction vessel while keeping all other experimental conditions constant. Here, we report the self-organization of soft chitosan tubes by injecting acidic chitosan sol into a pool of sodium hydroxide solution, where the adhesive force between the gel and container keeps the tubules on the bottom of the reactor. The horizontal growth of the tubular structure undergoes spontaneous symmetry breaking, where instabilities develop on the surface of the chitosan tubules. Transformation of folds into wrinkles and finally to a smooth tube takes place by varying the orientation of the container. In addition to characterizing the evolving structures, we have also shown that the linear growth rate of the tube scales with the tilt angle of the container from the horizontal.

New Signatures of Bio-Molecular Complexity in the Hypervelocity Impact Ejecta of Icy Moon Analogues

Impact delivery of prebiotic compounds to the early Earth from an impacting comet is considered to be one of the possible ways by which prebiotic molecules arrived on the Earth. Given the ubiquity of impact features observed on all planetary bodies, bolide impacts may be a common source of organics on other planetary bodies both in our own and other solar systems. Biomolecules such as amino acids have been detected on comets and are known to be synthesized due to impact-induced shock processing. Here we report the results of a set of hypervelocity impact experiments where we shocked icy mixtures of amino acids mimicking the icy surface of planetary bodies with high-speed projectiles using a two-stage light gas gun and analyzed the ejecta material after impact. Electron microscopic observations of the ejecta have shown the presence of macroscale structures with long polypeptide chains revealed from LCMS analysis. These results suggest a pathway in which impact on cometary ices containing building blocks of life can lead to the synthesis of material architectures that could have played a role in the emergence of life on the Earth and which may be applied to other planetary bodies as well.

Formation and growth of lithium phosphate chemical gardens

We show that a chemical garden can be developed from an alkaline metal precipitate using a flow-driven setup. By injecting sodium phosphate solution into lithium chloride solution from below, a liquid jet appears, on which a precipitate grows forming a structure resembling a hydrothermal vent. The precipitate column continuously builds upward until a maximum height is reached. The vertical growth then significantly slows down while the tube diameter still increases. The analysis of the growth profiles has revealed a linear dependence of volume growth rate on the injection rate, hence yielding a universal growth profile. The expansion in diameter, localized at the tip of the structure, scales with a power law suggesting that the phenomenon is controlled by both diffusion and convection.

Dark–induced vertical growth of chemobrionic architectures in silver based precipitating chemical gardens

Light sensitivity of many silver compounds has restricted observation of silver based chemical gardens. Here we report for the first time, silver based chemical gardens grown in dark. An identical...

Hierarchical Self-Assembly of Metal-Ion-Modulated Chitosan Tubules

Soft materials such as gels or biological tissues can develop via self-assembly under chemo-mechanical forces. Here, we report the instantaneous formation of soft tubular structures with a two-level hierarchy by injecting a mixture of inorganic salt and chitosan (CS) solution from below into a reactor filled with alkaline solution. Folding and wrinkling instabilities occur on the originally smooth surface controlled by the salt composition and concentration. Liesegang-like precipitation patterns develop on the outer surface on a μm length scale in the presence of calcium chloride, while the precipitate particles are distributed evenly in the bulk as corroborated by X-ray μ-CT. On the other hand, barium hydroxide precipitates out only in the thin outer layer of the CS tubule when barium chloride is introduced into the CS solution. Independent of the concentration of the weakly interacting salt, an electric potential gradient across the CS membrane develops, which vanishes when the pH difference between the two sides of the membrane diminishes.

Controlled self-assembly of chemical gardens enables fabrication of heterogeneous chemobrionic materials

Chemical gardens are an example of a chemobrionic system that typically result in abiotic macro-, micro- and nano- material architectures, with formation driven by complex out-of-equilibrium reaction mechanisms. From a technological perspective, controlling chemobrionic processes may hold great promise for the creation of novel, compositionally diverse and ultimately, useful materials and devices. In this work, we engineer an innovative custom-built liquid exchange unit that enables us to control the formation of tubular chemical garden structures grown from the interface between calcium loaded hydrogel and phosphate solution. We show that systematic displacement of phosphate solution with water (H₂O) can halt self-assembly, precisely control tube height and purify structures in situ. Furthermore, we demonstrate the fabrication of a heterogeneous chemobrionic composite material composed of aligned, high-aspect ratio calcium phosphate channels running through an otherwise dense matrix of poly(2-hydroxyethyl methacrylate) (pHEMA). Given that the principles we derive can be broadly applied to potentially control various chemobrionic systems, this work paves the way for fabricating multifunctional materials that may hold great potential in a variety of application areas, such as regenerative medicine, catalysis and microfluidics.

Metacode: One code to rule them all

The code of codes or metacode is a microcosm where biological layers, as well as their codes, interact together allowing the continuity of information flow in organisms by increasing biological entities' complexity. Through this novel organic code, biological systems scale towards niches with higher informatic freedom building structures that increase the entropy in the universe. Code biology has developed a novel informational framework where biological entities strive themselves through the information flow carried out through organic codes consisting of two molecular or functional landscapes intertwined through arbitrary linkages via an adaptor whose nature is autonomous from molecular determinism. Here we will integrate genomic and epigenomic codes according to the evidence released in ENCODE (phase 3), psychENCODE and GTEx project, outlining the principles of the metacode, to address the continuous nature of biological systems and their inter-layered information flow. This novel complex metacode maps from very constrained sets of elements (i.e., regulation sites modulating gene expression) to new ones with greater freedom of decoding (i.e., a continuous cell phenotypic space). This leads to a new domain in code biology where biological systems are informatic attractors that navigate an energy metaspace through a complexity-noise balance, stalling in emergent niches where organic codes take meaning.

Chemical Garden Membranes in Temperature-Controlled Microfluidic Devices

Thin-walled tubes that classically form when metal salts react with sodium silicate solution are known as chemical gardens. They share similarities with the porous, catalytic materials in hydrothermal vent chimneys, and both structures are exposed to steep pH gradients that, combined with thermal factors, might have provided the free energy for prebiotic chemistry on early Earth. We report temperature effects on the shape, composition, and opacity of chemical gardens. Tubes grown at high temperature are more opaque, indicating changes to the membrane structure or thickness. To study this dependence, we developed a temperature-controlled microfluidic device, which allows the formation of analogous membranes at the interface of two coflowing reactant solutions. For the case of Ni(OH)₂, membranes thicken according to a diffusion-controlled mechanism. In the studied range of 10-40 °C, the effective diffusion coefficient is independent of temperature. This suggests that counteracting processes are at play (including an increased solubility) and that the opacity of chemical garden tubes arises from changes in internal morphology. The latter could be linked to experimentally observed dendritic structures within the membranes.

Oscillatory budding dynamics of a chemical garden within a co-flow of reactants

The oscillatory growth of chemical gardens is studied experimentally in the budding regime using a co-flow of two reactant solutions within a microfluidic reactor. The confined environment of the reactor tames the erratic budding growth and the oscillations leave their imprint with the formation of orderly spaced membranes on the precipitate surface. The average wavelength of the spacing between membranes, the growth velocity of the chemical garden and the oscillations period are measured as a function of the velocity of each reactant. By means of materials characterization techniques, the micro-morphology and the chemical composition of the precipitate are explored. A mathematical model is developed to explain the periodic rupture of droplets delimitated by a shell of precipitate and growing when one reactant is injected into the other. The predictions of this model are in good agreement with the experimental data.

Bio-inspired flow-driven chitosan chemical gardens

Organic chemical gardens of chitosan hydrogel develop upon injecting an acidic chitosan solution into an alkaline solution. Besides complex and budding structures, tubular hydrogel formations develop that exhibit periodic surface patterns. The underlying wrinkling instability is identified by its characteristic wavelength dependence on the diameter of the elastic material formed. The flow-driven conditions allow precise control over the structure that can help the design of soft bio-inspired materials. Our findings can also suggest a new direction in the field of chemobrionics.