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Mitchell PW, Carney LH. A computational model of auditory chirp-velocity sensitivity and amplitude-modulation tuning in inferior colliculus neurons. J Comput Neurosci 2024; 52:285-302. [PMID: 39259462 DOI: 10.1007/s10827-024-00880-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Revised: 08/14/2024] [Accepted: 08/17/2024] [Indexed: 09/13/2024]
Abstract
We demonstrate a model of chirp-velocity sensitivity in the inferior colliculus (IC) that retains the tuning to amplitude modulation (AM) that was established in earlier models. The mechanism of velocity sensitivity is sequence detection by octopus cells of the posteroventral cochlear nucleus, which have been proposed in physiological studies to respond preferentially to the order of arrival of cross-frequency inputs of different amplitudes. Model architecture is based on coincidence detection of a combination of excitatory and inhibitory inputs. Chirp-sensitivity of the IC output is largely controlled by the strength and timing of the chirp-sensitive octopus-cell inhibitory input. AM tuning is controlled by inhibition and excitation that are tuned to the same frequency. We present several example neurons that demonstrate the feasibility of the model in simulating realistic chirp-sensitivity and AM tuning for a wide range of characteristic frequencies. Additionally, we explore the systematic impact of varying parameters on model responses. The proposed model can be used to assess the contribution of IC chirp-velocity sensitivity to responses to complex sounds, such as speech.
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Affiliation(s)
- Paul W Mitchell
- Department of Biomedical Engineering and Neuroscience, University of Rochester, Rochester, NY, USA
| | - Laurel H Carney
- Department of Biomedical Engineering and Neuroscience, University of Rochester, Rochester, NY, USA.
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Mitchell PW, Carney LH. A Computational Model of Auditory Chirp-Velocity Sensitivity and Amplitude-Modulation Tuning in Inferior Colliculus Neurons. RESEARCH SQUARE 2024:rs.3.rs-4450943. [PMID: 38883707 PMCID: PMC11177976 DOI: 10.21203/rs.3.rs-4450943/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2024]
Abstract
We demonstrate a model of chirp-velocity sensitivity in the inferior colliculus (IC) that retains the tuning to amplitude modulation (AM) that was established in earlier models. The mechanism of velocity sensitivity is sequence detection by octopus cells of the posteroventral cochlear nucleus, which have been proposed in physiological studies to respond preferentially to the order of arrival of cross-frequency inputs of different amplitudes. Model architecture is based on coincidence detection of a combination of excitatory and inhibitory inputs. Chirp-sensitivity of the IC output is largely controlled by the strength and timing of the chirp-sensitive octopus-cell inhibitory input. AM tuning is controlled by inhibition and excitation that are tuned to the same frequency. We present several example neurons that demonstrate the feasibility of the model in simulating realistic chirp-sensitivity and AM tuning for a wide range of characteristic frequencies. Additionally, we explore the systematic impact of varying parameters on model responses. The proposed model can be used to assess the contribution of IC chirp-velocity sensitivity to responses to complex sounds, such as speech.
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Affiliation(s)
- Paul W. Mitchell
- Department of Biomedical Engineering, University of Rochester, 601 Elmwood Ave, Rochester, NY, 14642, USA
| | - Laurel H. Carney
- Department of Biomedical Engineering, University of Rochester, 601 Elmwood Ave, Rochester, NY, 14642, USA
- Department of Neuroscience, University of Rochester, 601 Elmwood Ave, Rochester, NY, 14642, USA
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Su Y, Delgutte B. Pitch of harmonic complex tones: rate and temporal coding of envelope repetition rate in inferior colliculus of unanesthetized rabbits. J Neurophysiol 2019; 122:2468-2485. [PMID: 31664871 DOI: 10.1152/jn.00512.2019] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Harmonic complex tones (HCTs) found in speech, music, and animal vocalizations evoke strong pitch percepts at their fundamental frequencies. The strongest pitches are produced by HCTs that contain harmonics resolved by cochlear frequency analysis, but HCTs containing solely unresolved harmonics also evoke a weaker pitch at their envelope repetition rate (ERR). In the auditory periphery, neurons phase lock to the stimulus envelope, but this temporal representation of ERR degrades and gives way to rate codes along the ascending auditory pathway. To assess the role of the inferior colliculus (IC) in such transformations, we recorded IC neuron responses to HCT and sinusoidally modulated broadband noise (SAMN) with varying ERR from unanesthetized rabbits. Different interharmonic phase relationships of HCT were used to manipulate the temporal envelope without changing the power spectrum. Many IC neurons demonstrated band-pass rate tuning to ERR between 60 and 1,600 Hz for HCT and between 40 and 500 Hz for SAMN. The tuning was not related to the pure-tone best frequency of neurons but was dependent on the shape of the stimulus envelope, indicating a temporal rather than spectral origin. A phenomenological model suggests that the tuning may arise from peripheral temporal response patterns via synaptic inhibition. We also characterized temporal coding to ERR. Some IC neurons could phase lock to the stimulus envelope up to 900 Hz for either HCT or SAMN, but phase locking was weaker with SAMN. Together, the rate code and the temporal code represent a wide range of ERR, providing strong cues for the pitch of unresolved harmonics.NEW & NOTEWORTHY Envelope repetition rate (ERR) provides crucial cues for pitch perception of frequency components that are not individually resolved by the cochlea, but the neural representation of ERR for stimuli containing many harmonics is poorly characterized. Here we show that the pitch of stimuli with unresolved harmonics is represented by both a rate code and a temporal code for ERR in auditory midbrain neurons and propose possible underlying neural mechanisms with a computational model.
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Affiliation(s)
- Yaqing Su
- Eaton-Peabody Labs, Massachusetts Eye and Ear, Boston, Massachusetts.,Department of Biomedical Engineering, Boston University, Boston, Massachusetts
| | - Bertrand Delgutte
- Eaton-Peabody Labs, Massachusetts Eye and Ear, Boston, Massachusetts.,Department of Otolaryngology, Harvard Medical School, Boston, Massachusetts
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Fan L, Henry KS, Carney LH. Challenging One Model With Many Stimuli: Simulating Responses in the Inferior Colliculus. ACTA ACUST UNITED AC 2018; 104:895-899. [PMID: 33273896 PMCID: PMC7709792 DOI: 10.3813/aaa.919249] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Existing models to explain human psychophysics or neural responses are typically designed for a specific stimulus type and often fail for other stimuli. The ultimate goal for a neural model is to simulate responses to many stimuli, which may provide better insights into neural mechanisms. We tested the ability of modified same-frequency inhibition-excitation models for inferior colliculus neurons to simulate individual neuron responses to both amplitude-modulated sounds and tone-in-noise stimuli. Modifications to the model were guided by receptive fields computed with 2nd-order Wiener kernel analysis. This approach successfully simulated many individual neurons’ responses to different types of stimuli. Other neurons suggest limitations and future directions for modeling efforts.
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Affiliation(s)
- Langchen Fan
- Department of Biomedical Engineering, University of Rochester, New York, USA
| | - Kenneth S Henry
- Department of Otolaryngology, University of Rochester, New York, USA
- Department of Neuroscience, University of Rochester, New York, USA
| | - Laurel H Carney
- Department of Biomedical Engineering, University of Rochester, New York, USA
- Department of Neuroscience, University of Rochester, New York, USA
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Prediction of human's ability in sound localization based on the statistical properties of spike trains along the brainstem auditory pathway. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2014; 2014:575716. [PMID: 24799888 PMCID: PMC3988722 DOI: 10.1155/2014/575716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2013] [Revised: 02/06/2014] [Accepted: 03/02/2014] [Indexed: 11/17/2022]
Abstract
The minimum audible angle test which is commonly used for evaluating human localization ability depends on interaural time delay, interaural level differences, and spectral information about the acoustic stimulus. These physical properties are estimated at different stages along the brainstem auditory pathway. The interaural time delay is ambiguous at certain frequencies, thus confusion arises as to the source of these frequencies. It is assumed that in a typical minimum audible angle experiment, the brain acts as an unbiased optimal estimator and thus the human performance can be obtained by deriving optimal lower bounds. Two types of lower bounds are tested: the Cramer-Rao and the Barankin. The Cramer-Rao bound only takes into account the approximation of the true direction of the stimulus; the Barankin bound considers other possible directions that arise from the ambiguous phase information. These lower bounds are derived at the output of the auditory nerve and of the superior olivary complex where binaural cues are estimated. An agreement between human experimental data was obtained only when the superior olivary complex was considered and the Barankin lower bound was used. This result suggests that sound localization is estimated by the auditory nuclei using ambiguous binaural information.
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Yu L, Liu L. Optimal size of stochastic Hodgkin-Huxley neuronal systems for maximal energy efficiency in coding pulse signals. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 89:032725. [PMID: 24730892 DOI: 10.1103/physreve.89.032725] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Indexed: 06/03/2023]
Abstract
The generation and conduction of action potentials (APs) represents a fundamental means of communication in the nervous system and is a metabolically expensive process. In this paper, we investigate the energy efficiency of neural systems in transferring pulse signals with APs. By analytically solving a bistable neuron model that mimics the AP generation with a particle crossing the barrier of a double well, we find the optimal number of ion channels that maximizes the energy efficiency of a neuron. We also investigate the energy efficiency of a neuron population in which the input pulse signals are represented with synchronized spikes and read out with a downstream coincidence detector neuron. We find an optimal number of neurons in neuron population, as well as the number of ion channels in each neuron that maximizes the energy efficiency. The energy efficiency also depends on the characters of the input signals, e.g., the pulse strength and the interpulse intervals. These results are confirmed by computer simulation of the stochastic Hodgkin-Huxley model with a detailed description of the ion channel random gating. We argue that the tradeoff between signal transmission reliability and energy cost may influence the size of the neural systems when energy use is constrained.
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Affiliation(s)
- Lianchun Yu
- Institute of Theoretical Physics, Lanzhou University, Lanzhou 730000, China and Key Laboratory for Magnetism and Magnetic Materials of the Ministry of Education, Lanzhou University, Lanzhou 730000, China
| | - Liwei Liu
- College of Electrical Engineering, Northwest University for Nationalities, Lanzhou 730070, China
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Chen Y, Zhang H, Wang H, Yu L, Chen Y. The role of coincidence-detector neurons in the reliability and precision of subthreshold signal detection in noise. PLoS One 2013; 8:e56822. [PMID: 23418604 PMCID: PMC3572097 DOI: 10.1371/journal.pone.0056822] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2012] [Accepted: 01/15/2013] [Indexed: 11/19/2022] Open
Abstract
Subthreshold signal detection is an important task for animal survival in complex environments, where noise increases both the external signal response and the spontaneous spiking of neurons. The mechanism by which neurons process the coding of signals is not well understood. Here, we propose that coincidence detection, one of the ways to describe the functionality of a single neural cell, can improve the reliability and the precision of signal detection through detection of presynaptic input synchrony. Using a simplified neuronal network model composed of dozens of integrate-and-fire neurons and a single coincidence-detector neuron, we show how the network reads out the subthreshold noisy signals reliably and precisely. We find suitable pairing parameters, the threshold and the detection time window of the coincidence-detector neuron, that optimize the precision and reliability of the neuron. Furthermore, it is observed that the refractory period induces an oscillation in the spontaneous firing, but the neuron can inhibit this activity and improve the reliability and precision further. In the case of intermediate intrinsic states of the input neuron, the network responds to the input more efficiently. These results present the critical link between spiking synchrony and noisy signal transfer, which is utilized in coincidence detection, resulting in enhancement of temporally sensitive coding scheme.
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Affiliation(s)
- Yueling Chen
- Institute of Theoretical Physics, Lanzhou University, Lanzhou, China
- Department of Physics, Gansu College of Traditional Chinese Medicine, Lanzhou, China
| | - Hui Zhang
- Institute of Theoretical Physics, Lanzhou University, Lanzhou, China
| | - Hengtong Wang
- Institute of Theoretical Physics, Lanzhou University, Lanzhou, China
| | - Lianchun Yu
- Institute of Theoretical Physics, Lanzhou University, Lanzhou, China
| | - Yong Chen
- Institute of Theoretical Physics, Lanzhou University, Lanzhou, China
- Department of Mathematics, King’s College London, London, United Kingdom
- * E-mail:
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Pokora O, Lansky P. Estimating individual firing frequencies in a multiple spike train record. J Neurosci Methods 2012; 211:191-202. [PMID: 23000722 DOI: 10.1016/j.jneumeth.2012.09.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2012] [Revised: 08/09/2012] [Accepted: 09/11/2012] [Indexed: 11/25/2022]
Abstract
Neuronal activity of several neurons is commonly recorded by a single electrode and then the individual spike trains are separated. If the separation is difficult or fails, then as a minimal result of the experiment, the individual firing rates are of interest. The proposed method solves the problem of their identification. This is possible under the condition that the recorded neurons are independent in their activities. The number of the neurons in the multi-unit record needs to be given (known or assumed) prior the calculation. The proposed method is based on the presence of the refractory period in neuronal firing, however, its precise value is not required. In addition to the determination of the individual firing rates the method can be used for an inference about the refractory period itself.
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Affiliation(s)
- Ondrej Pokora
- Institute of Physiology, Academy of Sciences of the Czech Republic, Videnska 1083, 14220 Prague, Czech Republic.
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Wang GI, Delgutte B. Sensitivity of cochlear nucleus neurons to spatio-temporal changes in auditory nerve activity. J Neurophysiol 2012; 108:3172-95. [PMID: 22972956 DOI: 10.1152/jn.00160.2012] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The spatio-temporal pattern of auditory nerve (AN) activity, representing the relative timing of spikes across the tonotopic axis, contains cues to perceptual features of sounds such as pitch, loudness, timbre, and spatial location. These spatio-temporal cues may be extracted by neurons in the cochlear nucleus (CN) that are sensitive to relative timing of inputs from AN fibers innervating different cochlear regions. One possible mechanism for this extraction is "cross-frequency" coincidence detection (CD), in which a central neuron converts the degree of coincidence across the tonotopic axis into a rate code by preferentially firing when its AN inputs discharge in synchrony. We used Huffman stimuli (Carney LH. J Neurophysiol 64: 437-456, 1990), which have a flat power spectrum but differ in their phase spectra, to systematically manipulate relative timing of spikes across tonotopically neighboring AN fibers without changing overall firing rates. We compared responses of CN units to Huffman stimuli with responses of model CD cells operating on spatio-temporal patterns of AN activity derived from measured responses of AN fibers with the principle of cochlear scaling invariance. We used the maximum likelihood method to determine the CD model cell parameters most likely to produce the measured CN unit responses, and thereby could distinguish units behaving like cross-frequency CD cells from those consistent with same-frequency CD (in which all inputs would originate from the same tonotopic location). We find that certain CN unit types, especially those associated with globular bushy cells, have responses consistent with cross-frequency CD cells. A possible functional role of a cross-frequency CD mechanism in these CN units is to increase the dynamic range of binaural neurons that process cues for sound localization.
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Affiliation(s)
- Grace I Wang
- Eaton-Peabody Laboratories, Massachusetts Eye and Ear Infirmary, Boston, MA, USA
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Hunt JJ, Mattingley JB, Goodhill GJ. Randomly oriented edge arrangements dominate naturalistic arrangements in binocular rivalry. Vision Res 2012; 64:49-55. [DOI: 10.1016/j.visres.2012.05.007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2012] [Revised: 05/04/2012] [Accepted: 05/09/2012] [Indexed: 11/15/2022]
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Bures Z. The stochastic properties of input spike trains control neuronal arithmetic. BIOLOGICAL CYBERNETICS 2012; 106:111-122. [PMID: 22460694 DOI: 10.1007/s00422-012-0483-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2011] [Accepted: 03/14/2012] [Indexed: 05/31/2023]
Abstract
In the nervous system, the representation of signals is based predominantly on the rate and timing of neuronal discharges. In most everyday tasks, the brain has to carry out a variety of mathematical operations on the discharge patterns. Recent findings show that even single neurons are capable of performing basic arithmetic on the sequences of spikes. However, the interaction of the two spike trains, and thus the resulting arithmetic operation may be influenced by the stochastic properties of the interacting spike trains. If we represent the individual discharges as events of a random point process, then an arithmetical operation is given by the interaction of two point processes. Employing a probabilistic model based on detection of coincidence of random events and complementary computer simulations, we show that the point process statistics control the arithmetical operation being performed and, particularly, that it is possible to switch from subtraction to division solely by changing the distribution of the inter-event intervals of the processes. Consequences of the model for evaluation of binaural information in the auditory brainstem are demonstrated. The results accentuate the importance of the stochastic properties of neuronal discharge patterns for information processing in the brain; further studies related to neuronal arithmetic should therefore consider the statistics of the interacting spike trains.
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Affiliation(s)
- Zbynek Bures
- College of Polytechnics, Tolsteho 16, 58601, Jihlava, Czech Republic.
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