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Hamanaka Y, Hasebe M, Shiga S. Neural mechanism of circadian clock-based photoperiodism in insects and snails. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2024; 210:601-625. [PMID: 37596422 PMCID: PMC11226556 DOI: 10.1007/s00359-023-01662-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2023] [Revised: 07/16/2023] [Accepted: 07/19/2023] [Indexed: 08/20/2023]
Abstract
The photoperiodic mechanism distinguishes between long and short days, and the circadian clock system is involved in this process. Although the necessity of circadian clock genes for photoperiodic responses has been demonstrated in many species, how the clock system contributes to photoperiodic mechanisms remains unclear. A comprehensive study, including the functional analysis of relevant genes and physiology of their expressing cells, is necessary to understand the molecular and cellular mechanisms. Since Drosophila melanogaster exhibits a shallow photoperiodism, photoperiodic mechanisms have been studied in non-model species, starting with brain microsurgery and neuroanatomy, followed by genetic manipulation in some insects. Here, we review and discuss the involvement of the circadian clock in photoperiodic mechanisms in terms of neural networks in insects. We also review recent advances in the neural mechanisms underlying photoperiodic responses in insects and snails, and additionally circadian clock systems in snails, whose involvement in photoperiodism has hardly been addressed yet. Brain neurosecretory cells, insulin-like peptide/diuretic hormone44-expressing pars intercerebralis neurones in the bean bug Riptortus pedestris and caudo-dorsal cell hormone-expressing caudo-dorsal cells in the snail Lymnaea stagnalis, both promote egg laying under long days, and their electrical excitability is attenuated under short and medium days, which reduces oviposition. The photoperiodic responses of the pars intercerebralis neurones are mediated by glutamate under the control of the clock gene period. Thus, we are now able to assess the photoperiodic response by neurosecretory cell activity to investigate the upstream mechanisms, that is, the photoperiodic clock and counter.
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Affiliation(s)
- Yoshitaka Hamanaka
- Department of Biological Sciences, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka, 560-0043, Japan
| | - Masaharu Hasebe
- Department of Biological Sciences, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka, 560-0043, Japan
| | - Sakiko Shiga
- Department of Biological Sciences, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka, 560-0043, Japan.
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2
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Chapman EC, Bonsor BJ, Parsons DR, Rotchell JM. Influence of light and temperature cycles on the expression of circadian clock genes in the mussel Mytilus edulis. MARINE ENVIRONMENTAL RESEARCH 2020; 159:104960. [PMID: 32250881 DOI: 10.1016/j.marenvres.2020.104960] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Revised: 03/16/2020] [Accepted: 03/19/2020] [Indexed: 06/11/2023]
Abstract
Clock genes and environmental cues regulate essential biological rhythms. The blue mussel, Mytilus edulis, is an ecologically and economically important intertidal bivalve undergoing seasonal reproductive rhythms. We previously identified seasonal expression differences in M. edulis clock genes. Herein, the effects of light/dark cycles, constant darkness, and daily temperature cycles on the circadian expression patterns of such genes are characterised. Clock genes Clk, Cry1, ROR/HR3, Per and Rev-erb/NR1D1, and Timeout-like, show significant mRNA expression variation, persisting in darkness indicating endogenous control. Rhythmic expression was apparent under diurnal temperature cycles in darkness for all except Rev-erb. Temperature cycles induced a significant expression difference in the non-circadian clock-associated gene aaNAT. Furthermore, Suppression Subtractive Hybridisation (SSH) was used to identify seasonal genes with potential links to molecular clock function and revealed numerous genes meriting further investigation. Understanding the relationship between environmental cues and molecular clocks is crucial in predicting the outcomes of environmental change on fundamental rhythmic processes.
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Affiliation(s)
- Emma C Chapman
- Department of Biological and Marine Sciences, University of Hull, Cottingham Road, Hull, HU6 7RX, United Kingdom
| | - Brodie J Bonsor
- Department of Chemistry and Biochemistry, University of Hull, Cottingham Road, Hull, HU6 7RX, United Kingdom
| | - Daniel R Parsons
- Department of Geography, Geology and Environment, University of Hull, Cottingham Road, Hull, HU6 7RX, United Kingdom
| | - Jeanette M Rotchell
- Department of Biological and Marine Sciences, University of Hull, Cottingham Road, Hull, HU6 7RX, United Kingdom.
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3
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Tran D, Perrigault M, Ciret P, Payton L. Bivalve mollusc circadian clock genes can run at tidal frequency. Proc Biol Sci 2020; 287:20192440. [PMID: 31910786 DOI: 10.1098/rspb.2019.2440] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Marine coastal habitats are complex cyclic environments as a result of sun and moon interactions. In contrast with the well-known circadian orchestration of the terrestrial animal rhythmicity (approx. 24 h), the mechanism responsible for the circatidal rhythm (approx. 12.4 h) remains largely elusive in marine organisms. We revealed in subtidal field conditions that the oyster Crassostrea gigas exhibits tidal rhythmicity of circadian clock genes and clock-associated genes. A free-running (FR) experiment showed an endogenous circatidal rhythm. In parallel, we showed in the field that oysters' valve behaviour exhibited a strong tidal rhythm combined with a daily rhythm. In the FR experiment, all behavioural rhythms were circatidal, and half of them were also circadian. Our results fuel the debate on endogenous circatidal mechanisms. In contrast with the current hypothesis on the existence of an independent tidal clock, we suggest that a single 'circadian/circatidal' clock in bivalves is sufficient to entrain behavioural patterns at tidal and daily frequencies.
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Affiliation(s)
- Damien Tran
- EPOC, University of Bordeaux, UMR 5805, 33120 Arcachon, France.,EPOC, CNRS, UMR 5805, 33120 Arcachon, France
| | - Mickael Perrigault
- EPOC, University of Bordeaux, UMR 5805, 33120 Arcachon, France.,EPOC, CNRS, UMR 5805, 33120 Arcachon, France
| | - Pierre Ciret
- EPOC, University of Bordeaux, UMR 5805, 33120 Arcachon, France.,EPOC, CNRS, UMR 5805, 33120 Arcachon, France
| | - Laura Payton
- EPOC, University of Bordeaux, UMR 5805, 33120 Arcachon, France.,EPOC, CNRS, UMR 5805, 33120 Arcachon, France
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4
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Duback VE, Sabrina Pankey M, Thomas RI, Huyck TL, Mbarani IM, Bernier KR, Cook GM, O'Dowd CA, Newcomb JM, Watson WH. Localization and expression of putative circadian clock transcripts in the brain of the nudibranch Melibe leonina. Comp Biochem Physiol A Mol Integr Physiol 2018; 223:52-59. [PMID: 29753034 PMCID: PMC5995673 DOI: 10.1016/j.cbpa.2018.05.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Revised: 04/30/2018] [Accepted: 05/02/2018] [Indexed: 10/16/2022]
Abstract
The nudibranch, Melibe leonina, expresses a circadian rhythm of locomotion, and we recently determined the sequences of multiple circadian clock transcripts that may play a role in controlling these daily patterns of behavior. In this study, we used these genomic data to help us: 1) identify putative clock neurons using fluorescent in situ hybridization (FISH); and 2) determine if there is a daily rhythm of expression of clock transcripts in the M. leonina brain, using quantitative PCR. FISH indicated the presence of the clock-related transcripts clock, period, and photoreceptive and non-photoreceptive cryptochrome (pcry and npcry, respectively) in two bilateral neurons in each cerebropleural ganglion and a group of <10 neurons in the anterolateral region of each pedal ganglion. Double-label experiments confirmed colocalization of all four clock transcripts with each other. Quantitative PCR demonstrated that the genes clock, period, pcry and npcry exhibited significant differences in expression levels over 24 h. These data suggest that the putative circadian clock network in M. leonina consists of a small number of identifiable neurons that express circadian genes with a daily rhythm.
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COOK GEOFFREYM, GRUEN ANNAE, MORRIS JOHN, PANKEY MSABRINA, SENATORE ADRIANO, KATZ PAULS, WATSON WINSORH, NEWCOMB JAMESM. Sequences of Circadian Clock Proteins in the Nudibranch Molluscs Hermissenda crassicornis, Melibe leonina, and Tritonia diomedea. THE BIOLOGICAL BULLETIN 2018; 234:207-218. [PMID: 29949437 PMCID: PMC6180908 DOI: 10.1086/698467] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
While much is known about the genes and proteins that make up the circadian clocks in vertebrates and several arthropod species, much less is known about the clock genes in many other invertebrates, including nudibranchs. The goal of this project was to identify the RNA and protein products of putative clock genes in the central nervous system of three nudibranchs, Hermissenda crassicornis, Melibe leonina, and Tritonia diomedea. Using previously published transcriptomes (Hermissenda and Tritonia) and a new transcriptome (Melibe), we identified nudibranch orthologs for the products of five canonical clock genes: brain and muscle aryl hydrocarbon receptor nuclear translocator like protein 1, circadian locomotor output cycles kaput, non-photoreceptive cryptochrome, period, and timeless. Additionally, orthologous sequences for the products of five related genes-aryl hydrocarbon receptor nuclear translocator like, photoreceptive cryptochrome, cryptochrome DASH, 6-4 photolyase, and timeout-were determined. Phylogenetic analyses confirmed that the nudibranch proteins were most closely related to known orthologs in related invertebrates, such as oysters and annelids. In general, the nudibranch clock proteins shared greater sequence similarity with Mus musculus orthologs than Drosophila melanogaster orthologs, which is consistent with the closer phylogenetic relationships recovered between lophotrochozoan and vertebrate orthologs. The suite of clock-related genes in nudibranchs includes both photoreceptive and non-photoreceptive cryptochromes, as well as timeout and possibly timeless. Therefore, the nudibranch clock may resemble the one exhibited in mammals, or possibly even in non-drosopholid insects and oysters. The latter would be evidence supporting this as the ancestral clock for bilaterians.
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Key Words
- ARNTL, aryl hydrocarbon receptor nuclear translocator like
- BMAL1, brain and muscle aryl hydrocarbon receptor nuclear translocator like protein 1
- CLOCK, circadian locomotor output cycles kaput
- CNS, central nervous system
- CRY DASH, cryptochrome DASH
- FAD, flavin adenine dinucleotide
- G+I, gamma-distributed and invariant
- ML, maximum likelihood
- MSA, multiple sequence alignments
- NCBI, National Center for Biotechnology Information
- NPCRY, non-photoreceptive cryptochrome
- PAC, Per-Arnt-Sim-associated C-terminal
- PAS, Per-Arnt-Sim
- PCRY, photoreceptive cryptochrome
- PHR, 6-4 photolyase
- TSA, transcriptome shotgun assembly
- bHLH, basic helix-loop-helix
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Affiliation(s)
- GEOFFREY M. COOK
- Department of Biology and Health Science, New England College, Henniker, New Hampshire 03242
| | - ANNA E. GRUEN
- Department of Biological Sciences, University of New Hampshire, Durham, New Hampshire 03824
| | - JOHN MORRIS
- Department of Biology and Health Science, New England College, Henniker, New Hampshire 03242
| | - M. SABRINA PANKEY
- Department of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, New Hampshire 03824
| | - ADRIANO SENATORE
- Department of Biology, University of Massachusetts, Amherst, Massachusetts 01003
- Present address: Department of Biology, University of Toronto, Mississauga, Ontario L5L 1C6, Canada
| | - PAUL S. KATZ
- Department of Biology, University of Massachusetts, Amherst, Massachusetts 01003
| | - WINSOR H. WATSON
- Department of Biological Sciences, University of New Hampshire, Durham, New Hampshire 03824
| | - JAMES M. NEWCOMB
- Department of Biology and Health Science, New England College, Henniker, New Hampshire 03242
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Chapman EC, O’Dell AR, Meligi NM, Parsons DR, Rotchell JM. Seasonal expression patterns of clock-associated genes in the blue mussel Mytilus edulis. Chronobiol Int 2017; 34:1300-1314. [DOI: 10.1080/07420528.2017.1363224] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Emma C. Chapman
- School of Environmental Sciences, University of Hull, Hull, UK
| | | | - Noha M. Meligi
- Zoology Department, Faculty of Science, Minia University, Minia, Egypt
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Perrigault M, Tran D. Identification of the Molecular Clockwork of the Oyster Crassostrea gigas. PLoS One 2017; 12:e0169790. [PMID: 28072861 PMCID: PMC5224872 DOI: 10.1371/journal.pone.0169790] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2016] [Accepted: 12/21/2016] [Indexed: 12/17/2022] Open
Abstract
Molecular clock system constitutes the origin of biological rhythms that allow organisms to anticipate cyclic environmental changes and adapt their behavior and physiology. Components of the molecular clock are largely conserved across a broad range of species but appreciable diversity in clock structure and function is also present especially in invertebrates. The present work aimed at identify and characterize molecular clockwork components in relationship with the monitoring of valve activity behavior in the oyster Crassostrea gigas. Results provided the characterization of most of canonical clock gene including clock, bmal/cycle, period, timeless, vertebrate-type cry, rev-erb, ror as well as other members of the cryptochrome/photolyase family (plant-like cry, 6-4 photolyase). Analyses of transcriptional variations of clock candidates in oysters exposed to light / dark regime and to constant darkness led to the generation of a putative and original clockwork model in C. gigas, intermediate of described systems in vertebrates and insects. This study is the first characterization of a mollusk clockwork. It constitutes essential bases to understand interactions of the different components of the molecular clock in C. gigas as well as the global mechanisms associated to the generation and the synchronization of biological rhythms in oysters.
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Affiliation(s)
- Mickael Perrigault
- University of Bordeaux, EPOC, UMR 5805, Arcachon, France
- CNRS, EPOC, UMR 5805, Arcachon, France
- * E-mail:
| | - Damien Tran
- University of Bordeaux, EPOC, UMR 5805, Arcachon, France
- CNRS, EPOC, UMR 5805, Arcachon, France
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8
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Grabek KR, Chabot CC. Daily Rhythms of PERIOD protein in the eyestalk of the American lobster, Homarus americanus. MARINE AND FRESHWATER BEHAVIOUR AND PHYSIOLOGY 2012; 45:269-279. [PMID: 23487569 PMCID: PMC3593242 DOI: 10.1080/10236244.2012.730209] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The daily rhythm of PERIOD protein (PER) expression is an integral component of the circadian clock, which is found among a broad range of animal species including fruit flies, marine mollusks and even humans. The use of antibodies directed against PER has provided a helpful tool in the discovery of PER homologues and the labeling of putative pacemaker cells, especially in animals for which an annotated genome is not readily available. In this study, DrosophilaPER antibodies were used to probe for PER in the American lobster, Homarus americanus. This species exhibits robust endogenous circadian rhythms but the circadian clock has yet to be located or characterized. PER was detected in the eyestalks of the lobster but not in the brain. Furthermore, a significant effect of the LD cycle on daily PER abundance was identified, and PER was significantly more abundant at mid dark than in early light or mid light hours. Our results suggest that PER is a part of the molecular machinery of the circadian clock located in the eyestalk of the lobster.
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Affiliation(s)
- Katharine R Grabek
- Human Medical Genetics Program, Department of Cellular and Developmental Biology, University of Colorado School of Medicine, Aurora, CO 80045 USA
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9
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Lyons LC. Critical role of the circadian clock in memory formation: lessons from Aplysia. Front Mol Neurosci 2011; 4:52. [PMID: 22164133 PMCID: PMC3230803 DOI: 10.3389/fnmol.2011.00052] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2011] [Accepted: 11/24/2011] [Indexed: 11/13/2022] Open
Abstract
Unraveling the complexities of learning and the formation of memory requires identification of the cellular and molecular processes through which neural plasticity arises as well as recognition of the conditions or factors through which those processes are modulated. With its relatively simple nervous system, the marine mollusk Aplysia californica has proven an outstanding model system for studies of memory formation and identification of the molecular mechanisms underlying learned behaviors, including classical and operant associative learning paradigms and non-associative behaviors. In vivo behavioral studies in Aplysia have significantly furthered our understanding of how the endogenous circadian clock modulates memory formation. Sensitization of the tail-siphon withdrawal reflex represents a defensive non-associative learned behavior for which the circadian clock strongly modulates intermediate and long-term memory formation. Likewise, Aplysia exhibit circadian rhythms in long-term memory, but not short-term memory, for an operant associative learning paradigm. This review focuses on circadian modulation of intermediate and long-term memory and the putative mechanisms through which this modulation occurs. Additionally, potential functions and the adaptive advantages of time of day pressure on memory formation are considered. The influence of the circadian clock on learning and memory crosses distant phylogeny highlighting the evolutionary importance of the circadian clock on metabolic, physiological, and behavioral processes. Thus, studies in a simple invertebrate model system have and will continue to provide critical mechanistic insights to complementary processes in higher organisms.
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Affiliation(s)
- Lisa C Lyons
- Department of Biological Science, Program in Neuroscience, Florida State University , Tallahassee, FL, USA
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10
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von Schantz M. Phenotypic effects of genetic variability in human clock genes on circadian and sleep parameters. J Genet 2009; 87:513-9. [PMID: 19147940 DOI: 10.1007/s12041-008-0074-7] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Circadian rhythms and sleep are two separate but intimately related processes. Circadian rhythms are generated through the precisely controlled, cyclic expression of a number of genes designated clock genes. Genetic variability in these genes has been associated with a number of phenotypic differences in circadian as well as sleep parameters, both in mouse models and in humans. Diurnal preferences as determined by the selfreported Horne-Ostberg (HO) questionnaire, has been associated with polymorphisms in the human genes CLOCK, PER1, PER2 and PER3. Circadian rhythm-related sleep disorders have also been associated with mutations and polymorphisms in clock genes, with the advanced type cosegrating in an autosomal dominant inheritance pattern with mutations in the genes PER2 and CSNK1D, and the delayed type associating without discernible Mendelian inheritance with polymorphisms in CLOCK and PER3. Several mouse models of clock gene null alleles have been demonstrated to have affected sleep homeostasis. Recent findings have shown that the variable number tandem polymorphism in PER3, previously linked to diurnal preference, has profound effects on sleep homeostasis and cognitive performance following sleep loss, confirming the close association between the processes of circadian rhythms and sleep at the genetic level.
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Schomerus C, Korf HW, Laedtke E, Moret F, Zhang Q, Wicht H. Nocturnal Behavior and RhythmicPeriodGene Expression in a Lancelet,Branchiostoma lanceolatum. J Biol Rhythms 2008; 23:170-81. [DOI: 10.1177/0748730407313363] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The authors here present the first anatomical, molecular biological, and ethological data on the organization of the circadian system of a lancelet, Branchiostoma lanceolatum, a close invertebrate relative of vertebrates. B. lanceolatum was found to be a nocturnal animal and, since its rhythmic activity persisted under constant darkness, it also appears to possess an endogenous, circadian oscillator. The authors cloned a homolog of the clock gene Period ( Per), which plays a central (inhibitory) role in the biochemical machinery of the circadian oscillators of both vertebrates and protostomians. This gene from B. lanceolatum was designated as amphiPer. Both the sequence of its cDNA and that of the predicted protein are more similar to those of the Per paralogs of vertebrates than to those of the single protostomian Per gene. A strong expression of amphiPer was found in a small cell group in the anterior neural tube. The amphiPer mRNA levels fluctuated in a rhythmic manner, being high early in the day and low late at night. The authors' data suggest a homology of the amphiPer expessing cells to the suprachiasmatic nucleus of vertebrates.
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Affiliation(s)
- Christof Schomerus
- Fachbereich Medizin der Johann Wolfgang Goethe-Universität, Dr. Senckenbergische Anatomie, Institut für Anatomie II, Frankfurt, Germany,
| | - Horst-Werner Korf
- Fachbereich Medizin der Johann Wolfgang Goethe-Universität, Dr. Senckenbergische Anatomie, Institut für Anatomie II, Frankfurt, Germany
| | - Elke Laedtke
- Fachbereich Medizin der Johann Wolfgang Goethe-Universität, Dr. Senckenbergische Anatomie, Institut für Anatomie II, Frankfurt, Germany
| | | | - Qian Zhang
- Fachbereich Medizin der Johann Wolfgang Goethe-Universität, Dr. Senckenbergische Anatomie, Institut für Anatomie II, Frankfurt, Germany
| | - Helmut Wicht
- Fachbereich Medizin der Johann Wolfgang Goethe-Universität, Dr. Senckenbergische Anatomie, Institut für Anatomie II, Frankfurt, Germany
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Abstract
Biological pacemakers dictate our daily schedules in physiology and behaviour. The molecules, cells and networks that underlie these circadian rhythms can now be monitored using long-term cellular imaging and electrophysiological tools, and initial studies have already suggested a theme--circadian clocks may be crucial for widespread changes in brain activity and plasticity. These daily changes can modify the amount or activity of available genes, transcripts, proteins, ions and other biologically active molecules, ultimately determining cellular properties such as excitability and connectivity. Recently discovered circadian molecules and cells provide preliminary insights into a network that adapts to predictable daily and seasonal changes while remaining robust in the face of other perturbations.
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Affiliation(s)
- Erik D Herzog
- Biology Department, Washington University, St. Louis, Missouri 63130, USA.
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13
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Affiliation(s)
- Malcolm von Schantz
- Centre for Chronobiology, School of Biomedical and Molecular Sciences, University of Surrey, Guildford GU2 7XH, UK.
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14
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Affiliation(s)
- Malcolm von Schantz
- Centre for Chronobiology, School of Biomedical and Molecular Sciences, University of Surrey, Guildford GU2 7XH, UK.
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