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Wang S, Xu J, Zhao X, Feng Y, Xu W, Xue H, Wu M, Xu L. Small RNA-seq and hormones in the testes of dwarf hamsters ( Cricetulus barabensis) reveal the potential pathways in photoperiod regulated reproduction. Heliyon 2023; 9:e15687. [PMID: 37144180 PMCID: PMC10151367 DOI: 10.1016/j.heliyon.2023.e15687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 03/26/2023] [Accepted: 04/18/2023] [Indexed: 05/06/2023] Open
Abstract
Photoperiod regulates the functions and development of gonadal organs of seasonally breeding animals, resulting in breeding peaks in specific seasons. miRNA plays an important role in the regulation of testicular physiological functions. However, the relationship between photoperiods and miRNA levels in testes has yet to be conclusively determined. We investigated testicular miRNA of striped dwarf hamster (Cricetulus barabensis) responses to different photoperiods (long daylength [LD], moderate daylength [MD], and short daylength [SD]) and the potential pathways involved in photoperiod regulated reproduction. Testicular weights and reproductive hormone levels were measured in each of photoperiod treatments after 30 days. The concentrations of testosterone (T) and dihydrogen testosterone (DHT) in testes and Gonadotropin-releasing hormone (GnRH), follicle-stimulating hormone (FSH), and luteinizing hormone (LH) in serum were higher in MD than in the other two groups. Testicular weights were heaviest in MD. Small RNA-seq was performed for the testes of hamsters in three groups. A total of 769 miRNAs were identified, of which 83 were differentially expressed between LD, MD, and SD. GO and KEGG analysis of target genes revealed that some miRNAs influence testicular activities by regulating the pathways related to cell apoptosis and metabolism. Gene expression pattern analysis showed that the MAPK signaling pathway may be the core pathway for photoperiodic regulation of reproduction. These results suggest that moderate daylength is more suitable for hamster reproduction while long daylength and short daylength may regulate reproduction through different molecular pathways.
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2
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Joye DAM, Evans JA. Sex differences in daily timekeeping and circadian clock circuits. Semin Cell Dev Biol 2021; 126:45-55. [PMID: 33994299 DOI: 10.1016/j.semcdb.2021.04.026] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Revised: 04/24/2021] [Accepted: 04/29/2021] [Indexed: 11/19/2022]
Abstract
The circadian system regulates behavior and physiology in many ways important for health. Circadian rhythms are expressed by nearly every cell in the body, and this large system is coordinated by a central clock in the suprachiasmatic nucleus (SCN). Sex differences in daily rhythms are evident in humans and understanding how circadian function is modulated by biological sex is an important goal. This review highlights work examining effects of sex and gonadal hormones on daily rhythms, with a focus on behavior and SCN circuitry in animal models commonly used in pre-clinical studies. Many questions remain in this area of the field, which would benefit from further work investigating this topic.
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Affiliation(s)
- Deborah A M Joye
- Marquette University, Department of Biomedical Sciences, Milwaukee, WI, USA
| | - Jennifer A Evans
- Marquette University, Department of Biomedical Sciences, Milwaukee, WI, USA.
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3
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Walbeek TJ, Harrison EM, Gorman MR, Glickman GL. Naturalistic Intensities of Light at Night: A Review of the Potent Effects of Very Dim Light on Circadian Responses and Considerations for Translational Research. Front Neurol 2021; 12:625334. [PMID: 33597916 PMCID: PMC7882611 DOI: 10.3389/fneur.2021.625334] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Accepted: 01/06/2021] [Indexed: 12/16/2022] Open
Abstract
In this review, we discuss the remarkable potency and potential applications of a form of light that is often overlooked in a circadian context: naturalistic levels of dim light at night (nLAN), equivalent to intensities produced by the moon and stars. It is often assumed that such low levels of light do not produce circadian responses typically associated with brighter light levels. A solid understanding of the impacts of very low light levels is complicated further by the broad use of the somewhat ambiguous term “dim light,” which has been used to describe light levels ranging seven orders of magnitude. Here, we lay out the argument that nLAN exerts potent circadian effects on numerous mammalian species, and that given conservation of anatomy and function, the efficacy of light in this range in humans warrants further investigation. We also provide recommendations for the field of chronobiological research, including minimum requirements for the measurement and reporting of light, standardization of terminology (specifically as it pertains to “dim” light), and ideas for reconsidering old data and designing new studies.
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Affiliation(s)
- Thijs J Walbeek
- Center for Circadian Biology, University of California, San Diego, La Jolla, CA, United States.,Oregon Institute of Occupational Health Sciences, Oregon Health and Science University, Portland, OR, United States
| | - Elizabeth M Harrison
- Center for Circadian Biology, University of California, San Diego, La Jolla, CA, United States
| | - Michael R Gorman
- Center for Circadian Biology, University of California, San Diego, La Jolla, CA, United States.,Department of Psychology, University of California, San Diego, San Diego, CA, United States
| | - Gena L Glickman
- Center for Circadian Biology, University of California, San Diego, La Jolla, CA, United States.,Departments of Psychiatry and Neuroscience, Uniformed Services University of the Health Sciences, Bethesda, MD, United States
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4
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Seasonality and light phase-resetting in the mammalian circadian rhythm. Sci Rep 2020; 10:19506. [PMID: 33177530 PMCID: PMC7658258 DOI: 10.1038/s41598-020-74002-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Accepted: 09/18/2020] [Indexed: 11/13/2022] Open
Abstract
We study the impact of light on the mammalian circadian system using the theory of phase response curves. Using a recently developed ansatz we derive a low-dimensional macroscopic model for the core circadian clock in mammals. Significantly, the variables and parameters in our model have physiological interpretations and may be compared with experimental results. We focus on the effect of four key factors which help shape the mammalian phase response to light: heterogeneity in the population of oscillators, the structure of the typical light phase response curve, the fraction of oscillators which receive direct light input and changes in the coupling strengths associated with seasonal day-lengths. We find these factors can explain several experimental results and provide insight into the processing of light information in the mammalian circadian system. In particular, we find that the sensitivity of the circadian system to light may be modulated by changes in the relative coupling forces between the light sensing and non-sensing populations. Finally, we show how seasonal day-length, after-effects to light entrainment and seasonal variations in light sensitivity in the mammalian circadian clock are interrelated.
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5
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Onishi KG, Maneval AC, Cable EC, Tuohy MC, Scasny AJ, Sterina E, Love JA, Riggle JP, Malamut LK, Mukerji A, Novo JS, Appah-Sampong A, Gary JB, Prendergast BJ. Circadian and circannual timescales interact to generate seasonal changes in immune function. Brain Behav Immun 2020; 83:33-43. [PMID: 31351184 DOI: 10.1016/j.bbi.2019.07.024] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/03/2019] [Revised: 07/14/2019] [Accepted: 07/23/2019] [Indexed: 12/22/2022] Open
Abstract
Annual changes in day length enhance or suppress diverse aspects of immune function, giving rise to seasonal cycles of illness and mortality. The daily light-dark cycle also entrains circadian rhythms in immunity. Most published reports on immunological seasonality rely on measurements or interventions performed only at one point in the day. Because there can be no perfect matching of circadian phase across photoperiods of different duration, the manner in which these timescales interact to affect immunity is not understood. We examined whether photoperiodic changes in immune function reflect phenotypic changes that persist throughout the daily cycle, or merely reflect photoperiodic shifts in the circadian phase alignment of immunological rhythms. Diurnal rhythms in blood leukocyte trafficking, infection induced sickness responses, and delayed-type hypersensitivity skin inflammatory responses were examined at high-frequency sampling intervals (every 3 h) in Siberian hamsters (Phodopus sungorus) following immunological adaptation to summer or winter photoperiods. Photoperiod profoundly enhanced or suppressed immune function, in a trait-specific manner, and we were unable to identify a phase alignment of diurnal waveforms which eliminated these enhancing and suppressing effects of photoperiod. These results support the hypothesis that seasonal timescales affect immunity via mechanisms independent of circadian entrainment of the immunological circadian waveform.
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Affiliation(s)
- Kenneth G Onishi
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States.
| | - Andrew C Maneval
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Erin C Cable
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Mary Claire Tuohy
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Andrew J Scasny
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Evelina Sterina
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Jharnae A Love
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Jonathan P Riggle
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Leah K Malamut
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Aashna Mukerji
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Jennifer S Novo
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Abena Appah-Sampong
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Joseph B Gary
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States
| | - Brian J Prendergast
- Department of Psychology and Institute for Mind and Biology, University of Chicago, Chicago, IL 60637, United States; Committee on Neurobiology, University of Chicago, Chicago, IL 60637, United States; Grossman Institute for Neuroscience, Quantitative Biology and Human Behavior, University of Chicago, Chicago, IL 60637, United States
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6
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Abstract
Mathematical models have a long and influential history in the study of human circadian rhythms. Accurate predictive models for the human circadian light response have been used to study the impact of a host of light exposures on the circadian system. However, generally, these models do not account for the physiological basis of these rhythms. We illustrate a new paradigm for deriving models of the human circadian light response. Beginning from a high-dimensional model of the circadian neural network, we systematically derive low-dimensional models using an approach motivated by experimental measurements of circadian neurons. This systematic reduction allows for the variables and parameters of the derived model to be interpreted in a physiological context. We fit and validate the resulting models to a library of experimental measurements. Finally, we compare model predictions for experimental measurements of light levels and discuss the differences between our model’s predictions and previous models. Our modeling paradigm allows for the integration of experimental measurements across the single-cell, tissue, and behavioral scales, thereby enabling the development of accurate low-dimensional models for human circadian rhythms.
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Affiliation(s)
- Kevin M. Hannay
- Department of Mathematics, Schreiner University, Kerrville, Texas
| | - Victoria Booth
- Department of Mathematics, University of Michigan, Ann Arbor, Michigan
- Department of Anesthesiology, University of Michigan, Ann Arbor, Michigan
| | - Daniel B. Forger
- Department of Mathematics, University of Michigan, Ann Arbor, Michigan
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan
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7
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Walbeek TJ, Harrison EM, Soler RR, Gorman MR. Enhanced Circadian Entrainment in Mice and Its Utility under Human Shiftwork Schedules. Clocks Sleep 2019; 1:394-413. [PMID: 33089177 PMCID: PMC7445835 DOI: 10.3390/clockssleep1030032] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2019] [Accepted: 08/20/2019] [Indexed: 12/21/2022] Open
Abstract
The circadian system is generally considered to be incapable of adjusting to rapid changes in sleep/work demands. In shiftworkers this leads to chronic circadian disruption and sleep loss, which together predict underperformance at work and negative health consequences. Two distinct experimental protocols have been proposed to increase circadian flexibility in rodents using dim light at night: rhythm bifurcation and T-cycle (i.e., day length) entrainment. Successful translation of such protocols to human shiftworkers could facilitate alignment of internal time with external demands. To assess entrainment flexibility following bifurcation and exposure to T-cycles, mice in Study 1 were repeatedly phase-shifted. Mice from experimental conditions rapidly phase-shifted their activity, while control mice showed expected transient misalignment. In Study 2 and 3, mice followed a several weeks-long intervention designed to model a modified DuPont or Continental shiftwork schedule, respectively. For both schedules, bifurcation and nocturnal dim lighting reduced circadian misalignment. Together, these studies demonstrate proof of concept that mammalian circadian systems can be rendered sufficiently flexible to adapt to multiple, rapidly changing shiftwork schedules. Flexible adaptation to exotic light-dark cycles likely relies on entrainment mechanisms that are distinct from traditional entrainment.
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Affiliation(s)
- Thijs J. Walbeek
- Department of Psychology, University of California San Diego, La Jolla, CA 92093, USA
- Center for Circadian Biology, University of California San Diego, La Jolla, CA 92093, USA
- Correspondence: (T.J.W.); (M.R.G.); Tel.: +1-858-822-2466 (M.R.G.)
| | - Elizabeth M. Harrison
- Department of Psychology, University of California San Diego, La Jolla, CA 92093, USA
- Center for Circadian Biology, University of California San Diego, La Jolla, CA 92093, USA
| | - Robert R. Soler
- Department of Psychology, University of California San Diego, La Jolla, CA 92093, USA
| | - Michael R. Gorman
- Department of Psychology, University of California San Diego, La Jolla, CA 92093, USA
- Center for Circadian Biology, University of California San Diego, La Jolla, CA 92093, USA
- Correspondence: (T.J.W.); (M.R.G.); Tel.: +1-858-822-2466 (M.R.G.)
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8
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Walbeek TJ, Joye DAM, Mishra I, Gorman MR. Physiological, behavioral and environmental factors influence bifurcated circadian entrainment in mice. Physiol Behav 2019; 210:112625. [PMID: 31325510 DOI: 10.1016/j.physbeh.2019.112625] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 07/16/2019] [Accepted: 07/17/2019] [Indexed: 01/05/2023]
Abstract
Under permissive conditions, mice and hamsters exposed to a polyphasic light regime consisting of two light and two dark phases every 24 h (Light:Dark:Light:Dark; LDLD) can adopt a bifurcated entrainment pattern with roughly equal amounts of running wheel activity in each of the two nights. This rhythm "bifurcation" has significant after-effects on increased circadian adaptability: Mice that have been bifurcated show accelerated rates of re-entrainment after a sudden phase shift and have a markedly expanded range of entrainment. Identifying environmental and physiological factors that facilitate or prevent rhythm bifurcation in LDLD conditions will contribute to an understanding of mechanisms underlying enhanced circadian plasticity. Here we investigate the effects of sex, age, light intensity, access to a running wheel, melatonin, and diet composition on bifurcation behaviors of mice (C57Bl/6 J) exposed to LDLD. Female mice and young mice (<20 weeks) express more symmetrically bifurcated activity compared to male mice and older mice (>30 weeks). Additionally and independently, higher photophase intensities (~500 lx) predict more symmetric entrainment than low levels of light (~50 lx). Without access to a functional running-wheel, mice do not adopt bimodal activity patterns and only transiently maintain them, suggesting that high levels of aerobic activity are necessary for rhythm bifurcation. Neither a lifetime exposure to melatonin administered in the drinking water nor a high fat diet affected bifurcation. Collectively, these results demonstrate that circadian plasticity can be strongly modulated by intrinsic and extrinsic factors. With enhanced mechanistic understanding of this modulation, it may be possible to render human clocks more adaptable and thereby ameliorate negative consequences associated with repeated jet-lag or shift-work.
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Affiliation(s)
- Thijs J Walbeek
- Department of Psychology, University of California San Diego, La Jolla, CA 92093, United States of America; Center for Circadian Biology, University of California San Diego, La Jolla, CA 92093, United States of America.
| | - Deborah A M Joye
- Department of Psychology, University of California San Diego, La Jolla, CA 92093, United States of America; Center for Circadian Biology, University of California San Diego, La Jolla, CA 92093, United States of America
| | - Ila Mishra
- Center for Circadian Biology, University of California San Diego, La Jolla, CA 92093, United States of America; Department of Zoology, University of Delhi, Delhi 110007, India
| | - Michael R Gorman
- Department of Psychology, University of California San Diego, La Jolla, CA 92093, United States of America; Center for Circadian Biology, University of California San Diego, La Jolla, CA 92093, United States of America
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9
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Sun J, Joye DAM, Farkas AH, Gorman MR. Photoperiodic Requirements for Induction and Maintenance of Rhythm Bifurcation and Extraordinary Entrainment in Male Mice. Clocks Sleep 2019; 1:290-305. [PMID: 33089170 PMCID: PMC7445826 DOI: 10.3390/clockssleep1030025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Accepted: 06/27/2019] [Indexed: 11/18/2022] Open
Abstract
Exposure of mice to a 24 h light:dark:light:dark (LDLD) cycle with dimly illuminated nights induces the circadian timing system to program two intervals of activity and two intervals of rest per 24 h cycle and subsequently allows entrainment to a variety of extraordinary light regimens including 30 h LDLD cycles. Little is known about critical lighting requirements to induce and maintain this non-standard entrainment pattern, termed “bifurcation,” and to enhance the range of apparent entrainment. The current study determined the necessary duration of the photophase for animals to bifurcate and assessed whether requirements for maintenance differed from those for induction. An objective index of bifurcated entrainment varied with length of the photophase over 4–10 h durations, with highest values at 8 h. To assess photic requirements for the maintenance of bifurcation, mice from each group were subsequently exposed to the LDLD cycle with 4 h photophases. While insufficient to induce bifurcation, this photoperiod maintained bifurcation in mice transferred from inductive LDLD cycles. Entrainment to 30 h LDLD cycles also varied with photoperiod duration. These studies characterize non-invasive tools that reveal latent flexibility in the circadian control of rest/activity cycles with important translational potential for addressing needs of human shift-workers.
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10
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Evans JA, Gorman MR. In synch but not in step: Circadian clock circuits regulating plasticity in daily rhythms. Neuroscience 2016; 320:259-80. [PMID: 26861419 DOI: 10.1016/j.neuroscience.2016.01.072] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2015] [Revised: 01/26/2016] [Accepted: 01/27/2016] [Indexed: 11/16/2022]
Abstract
The suprachiasmatic nucleus (SCN) is a network of neural oscillators that program daily rhythms in mammalian behavior and physiology. Over the last decade much has been learned about how SCN clock neurons coordinate together in time and space to form a cohesive population. Despite this insight, much remains unknown about how SCN neurons communicate with one another to produce emergent properties of the network. Here we review the current understanding of communication among SCN clock cells and highlight a collection of formal assays where changes in SCN interactions provide for plasticity in the waveform of circadian rhythms in behavior. Future studies that pair analytical behavioral assays with modern neuroscience techniques have the potential to provide deeper insight into SCN circuit mechanisms.
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Affiliation(s)
- J A Evans
- Department of Biomedical Sciences, Marquette University, Milwaukee, WI, USA.
| | - M R Gorman
- Department of Psychology, University of San Diego, La Jolla, CA, USA
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11
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Meliska CJ, Martínez LF, López AM, Sorenson DL, Nowakowski S, Kripke DF, Elliott J, Parry BL. Antepartum depression severity is increased during seasonally longer nights: relationship to melatonin and cortisol timing and quantity. Chronobiol Int 2013; 30:1160-73. [PMID: 23998286 DOI: 10.3109/07420528.2013.808652] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Current research suggests that mood varies from season to season in some individuals, in conjunction with light-modulated alterations in chronobiologic indices such as melatonin and cortisol. The primary aim of this study was to evaluate the effects of seasonal variations in darkness on mood in depressed antepartum women, and to determine the relationship of seasonal mood variations to contemporaneous blood melatonin and cortisol measures; a secondary aim was to evaluate the influence of seasonal factors on measures of melancholic versus atypical depressive symptoms. We obtained measures of mood and overnight concentrations of plasma melatonin and serum cortisol in 19 depressed patients (DP) and 12 healthy control (HC) antepartum women, during on-going seasonal variations in daylight/darkness, in a cross-sectional design. Analyses of variance showed that in DP, but not HC, Hamilton Depression Rating Scale (HRSD) scores were significantly higher in women tested during seasonally longer versus shorter nights. This exacerbation of depressive symptoms occurred when the dim light melatonin onset, the melatonin synthesis offset, and the time of maximum cortisol secretion (acrophase) were phase-advanced (temporally shifted earlier), and melatonin quantity was reduced, in DP but not HC. Serum cortisol increased across gestational weeks in both the HC and DP groups, which did not differ significantly in cortisol concentration. Nevertheless, serum cortisol concentration correlated positively with HRSD score in DP but not HC; notably, HC showed neither significant mood changes nor altered melatonin and cortisol timing or quantity in association with seasonal variations. These findings suggest that depression severity during pregnancy may become elevated in association with seasonally related phase advances in melatonin and cortisol timing and reduced melatonin quantity that occur in DP, but not HC. Thus, women who experience antepartum depression may be more susceptible than their nondepressed counterparts to phase alterations in melatonin and cortisol timing during seasonally longer nights. Interventions that phase delay melatonin and/or cortisol timing-for example, increased exposure to bright evening light-might serve as an effective intervention for antepartum depressions whose severity is increased during seasonally longer nights.
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Affiliation(s)
- Charles J Meliska
- Department of Psychiatry, University of California, San Diego , La Jolla, California , USA
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12
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Leise TL. Wavelet analysis of circadian and ultradian behavioral rhythms. J Circadian Rhythms 2013; 11:5. [PMID: 23816159 PMCID: PMC3717080 DOI: 10.1186/1740-3391-11-5] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2013] [Accepted: 06/08/2013] [Indexed: 11/21/2022] Open
Abstract
We review time-frequency methods that can be useful in quantifying circadian and ultradian patterns in behavioral records. These records typically exhibit details that may not be captured through commonly used measures such as activity onset and so may require alternative approaches. For instance, activity may involve multiple bouts that vary in duration and magnitude within a day, or may exhibit day-to-day changes in period and in ultradian activity patterns. The discrete Fourier transform and other types of periodograms can estimate the period of a circadian rhythm, but we show that they can fail to correctly assess ultradian periods. In addition, such methods cannot detect changes in the period over time. Time-frequency methods that can localize frequency estimates in time are more appropriate for analysis of ultradian periods and of fluctuations in the period. The continuous wavelet transform offers a method for determining instantaneous frequency with good resolution in both time and frequency, capable of detecting changes in circadian period over the course of several days and in ultradian period within a given day. The discrete wavelet transform decomposes a time series into components associated with distinct frequency bands, thereby facilitating the removal of noise and trend or the isolation of a particular frequency band of interest. To demonstrate the wavelet-based analysis, we apply the transforms to a numerically-generated example and also to a variety of hamster behavioral records. When used appropriately, wavelet transforms can reveal patterns that are not easily extracted using other methods of analysis in common use, but they must be applied and interpreted with care.
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Affiliation(s)
- Tanya L Leise
- Department of Mathematics, Amherst College, Amherst, MA 01002 USA.
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