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Scott HL, Buckner N, Fernandez-Albert F, Pedone E, Postiglione L, Shi G, Allen N, Wong LF, Magini L, Marucci L, O'Sullivan GA, Cole S, Powell J, Maycox P, Uney JB. A dual druggable genome-wide siRNA and compound library screening approach identifies modulators of parkin recruitment to mitochondria. J Biol Chem 2020; 295:3285-3300. [PMID: 31911436 PMCID: PMC7062187 DOI: 10.1074/jbc.ra119.009699] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 12/20/2019] [Indexed: 01/07/2023] Open
Abstract
Genetic and biochemical evidence points to an association between mitochondrial dysfunction and Parkinson's disease (PD). PD-associated mutations in several genes have been identified and include those encoding PTEN-induced putative kinase 1 (PINK1) and parkin. To identify genes, pathways, and pharmacological targets that modulate the clearance of damaged or old mitochondria (mitophagy), here we developed a high-content imaging-based assay of parkin recruitment to mitochondria and screened both a druggable genome-wide siRNA library and a small neuroactive compound library. We used a multiparameter principal component analysis and an unbiased parameter-agnostic machine-learning approach to analyze the siRNA-based screening data. The hits identified in this analysis included specific genes of the ubiquitin proteasome system, and inhibition of ubiquitin-conjugating enzyme 2 N (UBE2N) with a specific antagonist, Bay 11-7082, indicated that UBE2N modulates parkin recruitment and downstream events in the mitophagy pathway. Screening of the compound library identified kenpaullone, an inhibitor of cyclin-dependent kinases and glycogen synthase kinase 3, as a modulator of parkin recruitment. Validation studies revealed that kenpaullone augments the mitochondrial network and protects against the complex I inhibitor MPP+. Finally, we used a microfluidics platform to assess the timing of parkin recruitment to depolarized mitochondria and its modulation by kenpaullone in real time and with single-cell resolution. We demonstrate that the high-content imaging-based assay presented here is suitable for both genetic and pharmacological screening approaches, and we also provide evidence that pharmacological compounds modulate PINK1-dependent parkin recruitment.
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Affiliation(s)
- Helen L Scott
- Bristol Medical School, University of Bristol, Bristol BS8 1TD, United Kingdom
| | - Nicola Buckner
- Bristol Medical School, University of Bristol, Bristol BS8 1TD, United Kingdom
| | | | - Elisa Pedone
- Department of Engineering and Mathematics, University of Bristol, Bristol BS8 1TD, United Kingdom; School of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, United Kingdom
| | - Lorena Postiglione
- Department of Engineering and Mathematics, University of Bristol, Bristol BS8 1TD, United Kingdom; School of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, United Kingdom
| | - Gongyu Shi
- Bristol Medical School, University of Bristol, Bristol BS8 1TD, United Kingdom
| | - Nicholas Allen
- School of Biosciences, Cardiff University, Cardiff CF10 3AX, United Kingdom
| | - Liang-Fong Wong
- Bristol Medical School, University of Bristol, Bristol BS8 1TD, United Kingdom
| | - Lorenzo Magini
- Bristol Medical School, University of Bristol, Bristol BS8 1TD, United Kingdom
| | - Lucia Marucci
- Department of Engineering and Mathematics, University of Bristol, Bristol BS8 1TD, United Kingdom; BrisSynBio, Bristol BS8 1QU, United Kingdom
| | - Gregory A O'Sullivan
- Takeda Cambridge Ltd., Cambridge Science Park, Cambridge CB4 0PZ, United Kingdom
| | - Sarah Cole
- Takeda Ventures, Inc., 61 Aldwych, London WC2B 4A, United Kingdom
| | - Justin Powell
- Takeda Cambridge Ltd., Cambridge Science Park, Cambridge CB4 0PZ, United Kingdom
| | - Peter Maycox
- Takeda Ventures, Inc., 61 Aldwych, London WC2B 4A, United Kingdom
| | - James B Uney
- Bristol Medical School, University of Bristol, Bristol BS8 1TD, United Kingdom.
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Affiliation(s)
- Patricia Villacé
- Innoprot (Innovative Technologies in Biological Systems), Derio, Spain
| | - Rosa M Mella
- Innoprot (Innovative Technologies in Biological Systems), Derio, Spain
| | - Danel Kortazar
- Innoprot (Innovative Technologies in Biological Systems), Derio, Spain
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