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Shimizu K, Xian S, Guo J. Reconstructing a Deblurred 3D Structure in a Turbid Medium from a Single Blurred 2D Image—For Near-Infrared Transillumination Imaging of a Human Body. SENSORS 2022; 22:s22155747. [PMID: 35957303 PMCID: PMC9370914 DOI: 10.3390/s22155747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Revised: 07/07/2022] [Accepted: 07/19/2022] [Indexed: 11/16/2022]
Abstract
To provide another modality for three-dimensional (3D) medical imaging, new techniques were developed to reconstruct a 3D structure in a turbid medium from a single blurred 2D image obtained using near-infrared transillumination imaging. One technique uses 1D information of a curvilinear absorber, or the intensity profile across the absorber image. Profiles in different conditions are calculated by convolution with the depth-dependent point spread function (PSF) of the transillumination image. In databanks, profiles are stored as lookup tables to connect the contrast and spread of the profile to the absorber depth. One-to-one correspondence from the contrast and spread to the absorber depth and thickness were newly found. Another technique uses 2D information of the transillumination image of a volumetric absorber. A blurred 2D image is deconvolved with the depth-dependent PSF, thereby producing many images with points of focus on different parts. The depth of the image part can be estimated by searching the deconvolved images for the image part in the best focus. To suppress difficulties of high-spatial-frequency noise, we applied a noise-robust focus stacking method. Experimentation verified the feasibility of the proposed techniques, and suggested their applicability to curvilinear and volumetric absorbers such as blood vessel networks and cancerous lesions in tissues.
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Affiliation(s)
- Koichi Shimizu
- Graduate School of Information, Production and Systems, Waseda University, Kitakyushu 808-0135, Japan
- School of Optoelectronic Engineering, Xidian University, Xi’an 710071, China
- Correspondence:
| | - Sihan Xian
- Graduate School of Information, Production and Systems, Waseda University, Kitakyushu 808-0135, Japan
| | - Jiekai Guo
- Graduate School of Information, Production and Systems, Waseda University, Kitakyushu 808-0135, Japan
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2
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Larusson F, Fantini S, Miller EL. Parametric level set reconstruction methods for hyperspectral diffuse optical tomography. BIOMEDICAL OPTICS EXPRESS 2012; 3:1006-24. [PMID: 22567593 PMCID: PMC3342179 DOI: 10.1364/boe.3.001006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2012] [Accepted: 03/15/2012] [Indexed: 05/20/2023]
Abstract
A parametric level set method (PaLS) is implemented for image reconstruction for hyperspectral diffuse optical tomography (DOT). Chromophore concentrations and diffusion amplitude are recovered using a linearized Born approximation model and employing data from over 100 wavelengths. The images to be recovered are taken to be piecewise constant and a newly introduced, shape-based model is used as the foundation for reconstruction. The PaLS method significantly reduces the number of unknowns relative to more traditional level-set reconstruction methods and has been show to be particularly well suited for ill-posed inverse problems such as the one of interest here. We report on reconstructions for multiple chromophores from simulated and experimental data where the PaLS method provides a more accurate estimation of chromophore concentrations compared to a pixel-based method.
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Affiliation(s)
- Fridrik Larusson
- Department of Electrical and Computer Engineering, Tufts University, Medford, MA 02155
USA
| | - Sergio Fantini
- Department of Biomedical Engineering, Tufts University, Medford, MA 02155
USA
| | - Eric L. Miller
- Department of Electrical and Computer Engineering, Tufts University, Medford, MA 02155
USA
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3
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Kulkarni P, Lozano D, Zouridakis G, Twa M. A statistical model of retinal optical coherence tomography image data. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2012; 2011:6127-30. [PMID: 22255737 DOI: 10.1109/iembs.2011.6091513] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Optical coherence tomography (OCT) is an important mode of biomedical imaging for the diagnosis and management of ocular disease. Here we report on the construction of a synthetic retinal OCT image data set that may be used for quantitative analysis of image processing methods. Synthetic image data were generated from statistical characteristics of real images (n = 14). Features include: multiple stratified layers with representative thickness, boundary gradients, contour, and intensity distributions derived from real data. The synthetic data also include retinal vasculature with typical signal obscuration beneath vessels. This synthetic retinal image can provide a realistic simulated data set to help quantify the performance of image processing algorithms.
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Larusson F, Fantini S, Miller EL. Hyperspectral image reconstruction for diffuse optical tomography. BIOMEDICAL OPTICS EXPRESS 2011; 2:946-65. [PMID: 21483616 PMCID: PMC3072133 DOI: 10.1364/boe.2.000946] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2011] [Revised: 03/10/2011] [Accepted: 03/10/2011] [Indexed: 05/25/2023]
Abstract
We explore the development and performance of algorithms for hyperspectral diffuse optical tomography (DOT) for which data from hundreds of wavelengths are collected and used to determine the concentration distribution of chromophores in the medium under investigation. An efficient method is detailed for forming the images using iterative algorithms applied to a linearized Born approximation model assuming the scattering coefficient is spatially constant and known. The L-surface framework is employed to select optimal regularization parameters for the inverse problem. We report image reconstructions using 126 wavelengths with estimation error in simulations as low as 0.05 and mean square error of experimental data of 0.18 and 0.29 for ink and dye concentrations, respectively, an improvement over reconstructions using fewer specifically chosen wavelengths.
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Affiliation(s)
- Fridrik Larusson
- Department of Electrical and Computer Engineering, Tufts University, Medford, Massachusetts 02155,
USA
| | - Sergio Fantini
- Department of Biomedical Engineering, Tufts University, Medford, Massachusetts 02155,
USA
| | - Eric L. Miller
- Department of Electrical and Computer Engineering, Tufts University, Medford, Massachusetts 02155,
USA
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5
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Abstract
In this article, we discuss the optical immersion method based on refractive index matching of scatterers (e.g., collagen, elastin fibers, cells and cell compartments) and the ground material (interstitial fluid and/or cytoplasm) of tissue and blood under the action of exogenous optical clearing agents. We analyze the optical clearing of fibrous and cell-structured tissues and blood from the point of view of receiving more valuable, normally hidden, information from spectroscopic and polarization measurements, confocal microscopy, optical coherence and optical projection tomography, as well as from nonlinear spectroscopies, such as two-photon fluorescence and second-harmonic generation techniques. Some important applications of the immersion technique to glucose sensing, drug delivery monitoring, improvements of image contrast and imaging depth, nondistortive delivery of laser radiation and precision tissue laser photodisruption, among others, are also described.
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Affiliation(s)
- Elina A Genina
- Research-Educational Institute of Optics and Biophotonics, Saratov State University, 410012 Saratov, Russia
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Boone JM, Yang K, Burkett GW, Packard NJ, Huang SY, Bowen S, Badawi RD, Lindfors KK. An X-Ray computed tomography/positron emission tomography system designed specifically for breast imaging. Technol Cancer Res Treat 2010; 9:29-44. [PMID: 20082528 DOI: 10.1177/153303461000900104] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Mammography has served the population of women who are at-risk for breast cancer well over the past 30 years. While mammography has undergone a number of changes as digital detector technology has advanced, other modalities such as computed tomography have experienced technological sophistication over this same time frame as well. The advent of large field of view flat panel detector systems enable the development of breast CT and several other niche CT applications, which rely on cone beam geometry. The breast, it turns out, is well suited to cone beam CT imaging because the lack of bones reduces artifacts, and the natural tapering of the breast anteriorly reduces the x-ray path lengths through the breast at large cone angle, reducing cone beam artifacts as well. We are in the process of designing a third prototype system which will enable the use of breast CT for image guided interventional procedures. This system will have several copies fabricated so that several breast CT scanners can be used in a multi-institutional clinical trial to better understand the role that this technology can bring to breast imaging.
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Affiliation(s)
- John M Boone
- Department of Radiology Engineering University of California, Davis UC Davis Medical Center 4860 Y Street, ACC Suite 3100 Sacramento, CA 95817, USA.
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Sassaroli A, Martelli F, Fantini S. Higher-order perturbation theory for the diffusion equation in heterogeneous media: application to layered and slab geometries. APPLIED OPTICS 2009; 48:D62-73. [PMID: 19340125 DOI: 10.1364/ao.48.000d62] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
We apply a previously proposed perturbation theory of the diffusion equation for studying light propagation through heterogeneous media in the presence of absorbing defects. The theory is based on the knowledge of (a) the geometric characteristics of a focal inclusion, (b) the mean optical path length inside the inclusion, and (c) the optical properties of the inclusion. The potential of this method is shown in the layered and slab geometries, where calculations are carried out up to the fourth order. The relative changes of intensity with respect to the unperturbed (heterogeneous) medium are predicted by the theory to within 10% for a wide range of contrasts dDeltamu(a) (up to dDeltamu(a) approximately 0.4-0.8), where d is the effective diameter of the defect and Deltamu(a) the absorption contrast between defect and local background. We also show how the method of Padé approximants can be used to extend the validity of the theory for a larger range of absorption contrasts. Finally, we study the possibility of using the proposed method for calculating the effect of a colocalized scattering and absorbing perturbation.
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Affiliation(s)
- Angelo Sassaroli
- Department of Biomedical Engineering, Tufts University, 4 Colby Street, Medford, Massachusetts, USA.
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Yu Y, Liu N, Sassaroli A, Fantini S. Near-infrared spectral imaging of the female breast for quantitative oximetry in optical mammography. APPLIED OPTICS 2009; 48:D225-D235. [PMID: 19340113 DOI: 10.1364/ao.48.00d225] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
We present a hybrid continuous-wave, frequency-domain instrument for near-infrared spectral imaging of the female breast based on a tandem, planar scanning of one illumination optical fiber and one collection optical fiber configured in a transmission geometry. The spatial sampling rate of 25 points/cm(2) is increased to 400 points/cm(2) by postprocessing the data with a 2D cubic spline interpolation. We then apply a previously developed spatial second-derivative algorithm to an edge-corrected intensity image (N-image) to enhance the visibility and resolution of optical inhomogeneities in breast tissue such as blood vessels and tumors. The spectral data at each image pixel consist of 515-point spectra over the 650-900 nm wavelength range, thus featuring a spectral density of two data points per nanometer. We process the measured spectra with a paired-wavelength spectral analysis method to quantify the oxygen saturation of detected optical inhomogeneities, under the assumption that they feature a locally higher hemoglobin concentration. Our initial measurements on two healthy human subjects have generated high-resolution optical mammograms displaying a network of blood vessels with values of hemoglobin saturation typically falling within the 60%-95% range, which is physiologically reasonable. This approach to spectral imaging and oximetry of the breast has the potential to efficiently exploit the high intrinsic contrast provided by hemoglobin in breast tissue and to contribute a useful tool in the detection, diagnosis, and monitoring of breast pathologies.
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Affiliation(s)
- Yang Yu
- Department of Biomedical Engineering, Tufts University, 4 Colby Street, Medford, Massachusetts 02155, USA
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9
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Jiang S, Pogue BW, Laughney AM, Kogel CA, Paulsen KD. Measurement of pressure-displacement kinetics of hemoglobin in normal breast tissue with near-infrared spectral imaging. APPLIED OPTICS 2009; 48:D130-6. [PMID: 19340100 PMCID: PMC2804884 DOI: 10.1364/ao.48.00d130] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Applying localized external displacement to the breast surface can change the interstitial fluid pressure such that regional transient microvascular changes occur in oxygenation and vascular volume. Imaging these dynamic responses over time, while different pressures are applied, could provide selective temporal contrast for cancer relative to the surrounding normal breast. In order to investigate this possibility in normal breast tissue, a near-infrared spectral tomography system was developed that can simultaneously acquire data at three wavelengths with a 15 s time resolution per scan. The system was tested first with heterogeneous blood phantoms. Changes in regional blood concentrations were found to be linearly related to recovered mean hemoglobin concentration (Hb(T)) values (R(2)=0.9). In a series of volunteer breast imaging exams, data from 17 asymptomatic subjects were acquired under increasing and decreasing breast compression. Calculations show that a 10 mm displacement applied to the breast results in surface pressures in the range of 0-55 kPa depending on breast density. The recovered human data indicate that Hb(T) was reduced under compression and the normalized change was significantly correlated to the applied pressure with a p value of 0.005. The maximum Hb(T) decreases in breast tissue were associated with body mass index (BMI), which is a surrogate indicator of breast density. No statistically valid correlations were found between the applied pressure and the changes in tissue oxygen saturation (S(t)O(2)) or water percentage (H(2)O) across the range of BMI values studied.
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Affiliation(s)
- Shudong Jiang
- Thayer School of Engineering, Dartmouth College, Hanover, New Hampshire 03755, USA.
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Dixit SS, Kim H, Visser B, Faris GW. Development of a transillumination infrared modality for differential vasoactive optical imaging. APPLIED OPTICS 2009; 48:D178-86. [PMID: 19340107 DOI: 10.1364/ao.48.00d178] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
We present the development and implementation of a new near infrared transillumination imaging modality for tissue imaging. Exogenous inhaled hyperoxic and hypercarbic gases are used as "vasoactive contrast agents" via the production of changes in concentration of the endogenous HbO(2) and Hb in blood. This vasoactive differential imaging method is employed to acquire data and for subsequent image analysis. Spectroscopic changes obtained from transillumination measurements on the palms of healthy volunteers demonstrate the functionality of the imaging platform. This modality is being developed to monitor suspect breast lesions in a clinical setting based on the hypothesis that the atypical tumor vascular environment will yield sufficient contrast for differential optical imaging between diseased and healthy tissue.
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Affiliation(s)
- Sanhita S Dixit
- Molecular Physics Laboratory, SRI International, Menlo Park, California 94025, USA.
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11
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Fantini S, Taroni P. Optical Mammography. Cancer Imaging 2008. [DOI: 10.1016/b978-012374212-4.50049-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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12
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Lasker JM, Masciotti JM, Schoenecker M, Schmitz CH, Hielscher AH. Digital-signal-processor-based dynamic imaging system for optical tomography. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2007; 78:083706. [PMID: 17764328 DOI: 10.1063/1.2769577] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
In this article, we introduce a dynamic optical tomography system that is, unlike currently available analog instrumentation, based on digital data acquisition and filtering techniques. At the core of this continuous wave instrument is a digital signal processor (DSP) that collects, collates, processes, and filters the digitized data set. The processor is also responsible for managing system timing and the imaging routines which can acquire real-time data at rates as high as 150 Hz. Many of the synchronously timed processes are controlled by a complex programmable logic device that is also used in conjunction with the DSP to orchestrate data flow. The operation of the system is implemented through a comprehensive graphical user interface designed with LABVIEW software which integrates automated calibration, data acquisition, data organization, and signal postprocessing. Performance analysis demonstrates very low system noise (approximately 1 pW rms noise equivalent power), excellent signal precision (<0.04%-0.2%) and long term system stability (<1% over 40 min). A large dynamic range (approximately 190 dB) accommodates a wide scope of measurement geometries and tissue types. First experiments on tissue phantoms show that dynamic behavior is accurately captured and spatial location can be correctly tracked using this system.
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Affiliation(s)
- Joseph M Lasker
- Department of Biomedical Engineering, Columbia University, 351 Engineering Terrace MC8904, New York, NY 10027, USA
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Kelloff GJ, Sigman CC. Assessing intraepithelial neoplasia and drug safety in cancer-preventive drug development. Nat Rev Cancer 2007; 7:508-18. [PMID: 17568791 DOI: 10.1038/nrc2154] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Despite significant interest from the research community and the population in general, drug approvals for cancer prevention and/or cancer risk reduction are few. This is due, in part, to the requirement that new cancer-preventive drugs must first be shown to be efficacious in reducing cancer incidence or mortality. Moreover, such drugs need to have proven safety for long-term administration. This process can be improved by focusing on precancer (intraepithelial neoplasia) to identify subjects at risk and prove efficacy in shorter, smaller trials as well as on detecting early markers of potential toxicities of chronic exposure to cancer-preventive drug regimens.
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Affiliation(s)
- Gary J Kelloff
- National Institutes of Health, National Cancer Institute, Division of Cancer Treatment and Diagnosis, Executive Plaza North Room 6058, 6130 Executive Boulevard, Rockville, Maryland 20852, USA.
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14
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Boone JM, Kwan ALC, Yang K, Burkett GW, Lindfors KK, Nelson TR. Computed tomography for imaging the breast. J Mammary Gland Biol Neoplasia 2006; 11:103-11. [PMID: 17053979 DOI: 10.1007/s10911-006-9017-1] [Citation(s) in RCA: 92] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Abstract
Despite the success of screening mammography contributing to the reduction of cancer mortality, a number of other imaging techniques are being studied for breast cancer screening. In our laboratory, a dedicated breast computed tomography (CT) system has been developed and is currently undergoing patient testing. The breast CT system is capable of scanning the breast with the woman lying prone on a tabletop, with the breast in the pendant position. A 360 degrees scan currently requires 16.6 s, and a second scanner with a 9-second scan time is nearly operational. Extensive effort was placed on computing the radiation dose to the breast under CT geometry, and the scan parameters are selected to utilize the same radiation dose levels as two-view mammography. A total of 55 women have been scanned, ten healthy volunteers in a Phase I trial, and 45 women with a high likelihood of having breast cancer in a Phase II trial. The breast CT process leads to the production of approximately three hundred 512 x 512 images for each breast. Subjective evaluation of the breast CT images reveals excellent anatomical detail, good depiction of microcalcifications, and exquisite visualization of the soft tissue components of the tumor when contrasted against adipose tissues. The use of iodine contrast injection dramatically enhances the visualization of tumors. While a thorough scientific investigation based upon observer performance studies is in progress, initial breast CT images do appear promising and it is likely that breast CT will play some role in breast cancer imaging.
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Affiliation(s)
- John M Boone
- Department of Radiology, UC Davis Medical Center, University of California, Davis, 4860 Y Street, Suite 3100, Sacramento, CA 95817, USA.
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