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Indira Cervantes-Díaz C, Patiño-Conde V, González-Rodríguez A, Quesada M, Cuevas E. Molecular and morphological evidence of hybridization between two dimorphic sympatric species of Fuchsia (Onagraceae). AOB PLANTS 2024; 16:plad089. [PMID: 38213511 PMCID: PMC10783250 DOI: 10.1093/aobpla/plad089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 12/16/2023] [Indexed: 01/13/2024]
Abstract
Hybridization is commonly reported in angiosperms, generally based on morphology, and in few cases confirmed by molecular markers. Fuchsia has a long tradition of ornamental cultivars with different hybrids produced by artificial crosses, so natural hybridization between sympatric Fuchsia species could be common. Natural hybridization between F. microphylla and F. thymifolia was tested using six newly developed microsatellites for F. microphylla in addition to other molecular markers with codominant and maternal inheritance. Geometric morphometrics of leaves and floral structures were also used to identify putative hybrids. Hybrids showed a different degree of genetic admixture between both parental species. Chloroplast DNA (cpDNA) sequences indicated that hybridization occurs in both directions, in fact, some of the hybrids showed new haplotypes for cpDNA and ITS (internal transcriber spacer of nuclear ribosomal RNA genes) sequences. The morphology of hybrid individuals varied between the two parental species, but they could be better identified by their leaves and floral tubes. Our study is the first to confirm the hybridization in natural populations of Fuchsia species and suggests that hybridization has probably occurred repeatedly throughout the entire distribution of the species. Phylogeographic analysis of both species will be essential to understanding the impact of hybridization throughout their complete distribution.
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Affiliation(s)
- Cinthya Indira Cervantes-Díaz
- Laboratorio Nacional de Análisis y Síntesis Ecológica (LANASE), Escuela Nacional de Estudios Superiores, Unidad Morelia, Universidad Nacional Autónoma de México, Morelia 58190, Michoacán, México
- Facultad de Biología, Universidad Michoacana de San Nicolás de Hidalgo 58000, Morelia, Michoacán, México
| | - Violeta Patiño-Conde
- Laboratorio Nacional de Análisis y Síntesis Ecológica (LANASE), Escuela Nacional de Estudios Superiores, Unidad Morelia, Universidad Nacional Autónoma de México, Morelia 58190, Michoacán, México
| | - Antonio González-Rodríguez
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Morelia 58190, Michoacán, México
| | - Mauricio Quesada
- Laboratorio Nacional de Análisis y Síntesis Ecológica (LANASE), Escuela Nacional de Estudios Superiores, Unidad Morelia, Universidad Nacional Autónoma de México, Morelia 58190, Michoacán, México
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Morelia 58190, Michoacán, México
| | - Eduardo Cuevas
- Laboratorio Nacional de Análisis y Síntesis Ecológica (LANASE), Escuela Nacional de Estudios Superiores, Unidad Morelia, Universidad Nacional Autónoma de México, Morelia 58190, Michoacán, México
- Facultad de Biología, Universidad Michoacana de San Nicolás de Hidalgo 58000, Morelia, Michoacán, México
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Zhang SY, Hu YF, Wang HT, Zhang PC, Shao JW. Over 30 Years of Misidentification: A New Nothospecies Lycoris × jinzheniae (Amaryllidaceae) in Eastern China, Based on Molecular, Morphological, and Karyotypic Evidence. PLANTS (BASEL, SWITZERLAND) 2022; 11:1730. [PMID: 35807681 PMCID: PMC9269102 DOI: 10.3390/plants11131730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 06/26/2022] [Accepted: 06/26/2022] [Indexed: 06/15/2023]
Abstract
Based on the complete chloroplast genome, morphology, and karyotype evidence, we identified a new nothospecies, Lycoris × jinzheniae S.Y. Zhang, P.C. Zhang & J.W. Shao, in eastern China. This new nothospecies has been inappropriately named Lycoris × albiflora in the previous literature for more than 30 years. However, the new nothospecies resulted from the hybridization of L. sprengeri and L. chinensis and had the following characteristics: the karyotype was 2n = 19 = 3V + 16I, the leaves emerged in the spring, the ratio of filament to corolla length was approximately 1.2, tepals were slightly undulated and curved, and it was distributed throughout eastern China. These characteristics are quite different from those of L. × albiflora; thus, in this study, we named it and provided a detailed morphological description and diagnosis.
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Affiliation(s)
- Si-Yu Zhang
- College of Life Sciences, Anhui Normal University, Wuhu 241000, China; (S.-Y.Z.); (Y.-F.H.); (H.-T.W.)
| | - Ying-Feng Hu
- College of Life Sciences, Anhui Normal University, Wuhu 241000, China; (S.-Y.Z.); (Y.-F.H.); (H.-T.W.)
| | - Hao-Tian Wang
- College of Life Sciences, Anhui Normal University, Wuhu 241000, China; (S.-Y.Z.); (Y.-F.H.); (H.-T.W.)
| | | | - Jian-Wen Shao
- College of Life Sciences, Anhui Normal University, Wuhu 241000, China; (S.-Y.Z.); (Y.-F.H.); (H.-T.W.)
- The Key Laboratory of Conservation and Employment of Biological Resources of Anhui, Anhui Normal University, Wuhu 241000, China
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Zhang WP, Cao L, Lin XR, Ding YM, Liang Y, Zhang DY, Pang EL, Renner SS, Bai WN. Dead-End Hybridization in Walnut Trees Revealed by Large-Scale Genomic Sequence Data. Mol Biol Evol 2022; 39:msab308. [PMID: 34687315 PMCID: PMC8760940 DOI: 10.1093/molbev/msab308] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
Although hybridization plays a large role in speciation, some unknown fraction of hybrid individuals never reproduces, instead remaining as genetic dead-ends. We investigated a morphologically distinct and culturally important Chinese walnut, Juglans hopeiensis, suspected to have arisen from hybridization of Persian walnut (J. regia) with Asian butternuts (J. cathayensis, J. mandshurica, and hybrids between J. cathayensis and J. mandshurica). Based on 151 whole-genome sequences of the relevant taxa, we discovered that all J. hopeiensis individuals are first-generation hybrids, with the time for the onset of gene flow estimated as 370,000 years, implying both strong postzygotic barriers and the presence of J. regia in China by that time. Six inversion regions enriched for genes associated with pollen germination and pollen tube growth may be involved in the postzygotic barriers that prevent sexual reproduction in the hybrids. Despite its long-recurrent origination and distinct traits, J. hopeiensis does not appear on the way to speciation.
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Affiliation(s)
- Wei-Ping Zhang
- State Key Laboratory of Earth Surface Processes and Resource Ecology and Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Lei Cao
- State Key Laboratory of Earth Surface Processes and Resource Ecology and Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Xin-Rui Lin
- State Key Laboratory of Earth Surface Processes and Resource Ecology and Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Ya-Mei Ding
- State Key Laboratory of Earth Surface Processes and Resource Ecology and Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Yu Liang
- State Key Laboratory of Earth Surface Processes and Resource Ecology and Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Da-Yong Zhang
- State Key Laboratory of Earth Surface Processes and Resource Ecology and Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Er-Li Pang
- State Key Laboratory of Earth Surface Processes and Resource Ecology and Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, China
| | - Susanne S Renner
- Department of Biology, Washington University, Saint Louis, MO, USA
| | - Wei-Ning Bai
- State Key Laboratory of Earth Surface Processes and Resource Ecology and Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences, Beijing Normal University, Beijing, China
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Liao R, Sun W, Ma Y. Natural hybridization between two butterfly bushes in Tibet: dominance of F 1 hybrids promotes strong reproductive isolation. BMC PLANT BIOLOGY 2021; 21:133. [PMID: 33691631 PMCID: PMC7945306 DOI: 10.1186/s12870-021-02909-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Accepted: 02/28/2021] [Indexed: 05/30/2023]
Abstract
BACKGROUND It has been recognized that a certain amount of habitat disturbance is a facilitating factor for the occurrence of natural hybridization, yet to date we are unaware of any studies exploring hybridization and reproductive barriers in those plants preferentially occupying disturbed habitats. Buddleja plants (also called butterfly bush) generally do grow in disturbed habitats, and several species with hybrid origin have been proposed, based solely on morphological evidence. RESULTS In the present study, we test the hypothesis that B. × wardii is of natural hybridization origin in two sympatric populations of three taxa including B. × wardii and its parents (B. alternifolia and B. crispa) plus 4 referenced parental populations, using four nuclear genes and three chloroplast intergenic spacers, as well as with 10 morphological characters. Our results suggest that at both sites B. × wardii is likely to be a hybrid between B. alternifolia and B. crispa, and moreover, we confirm that most of the hybrids examined are F1s. That these plants are F1s is further supported by morphology, as no transgressive characters were detected. B. crispa was found to be the maternal parent in the Bahe (BH) population, from cpDNA evidence. However, in the Taji (TJ) population, the direction of hybridization was difficult to establish due to the shared cpDNA haplotypes between B. alternifolia and B. crispa, however we still predicted a similar unidirectional hybridization pattern due to results from cross-specific pollination treatments which supported the "SI × SC rule". CONCLUSIONS The presence of mainly F1 hybrids can successfully impede gene flow and thus maintain species boundaries in parental species in a typical distribution of Buddleja, i.e. in disturbed habitats.
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Affiliation(s)
- Rongli Liao
- Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations/ Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Weibang Sun
- Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations/ Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, China.
| | - Yongpeng Ma
- Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations/ Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, China.
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Farhat P, Siljak-Yakovlev S, Valentin N, Fabregat C, Lopez-Udias S, Salazar-Mendias C, Altarejos J, Adams RP. Gene flow between diploid and tetraploid junipers - two contrasting evolutionary pathways in two Juniperus populations. BMC Evol Biol 2020; 20:148. [PMID: 33167862 PMCID: PMC7650182 DOI: 10.1186/s12862-020-01688-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Accepted: 09/09/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Gene flow and polyploidy have been found to be important in Juniperus evolution. However, little evidence has been published elucidating the association of both phenomena in juniper taxa in the wild. Two main areas were studied in Spain (Eastern Iberian Range and Sierra de Baza) with both diploid and tetraploid taxa present in sympatry. Gene flow and ploidy level were assessed for these taxa and the resulted offspring. RESULTS Twenty-two allo-triploid hybrids between J. sabina var. sabina and J. thurifera were found in the Eastern Iberian Range population. However, in the Sierra de Baza population no triploids were found. Instead, 18 allo-tetraploid hybrids between two tetraploid taxa: J. sabina var. balkanensis and J. thurifera were discovered. High genetic diversity was exhibited among the tetraploid hybrids at Sierra de Baza, in contrast to the genetically identical triploid hybrids at the Eastern Iberian Range; this suggests meiotic difficulties within the triploid hybrids. In addition, unidirectional gene flow was observed in both studied areas. CONCLUSION Polyploidy and hybridization can be complementary partners in the evolution of Juniperus taxa in sympatric occurrences. Juniperus was shown to be an ideal coniferous model to study these two phenomena, independently or in concert.
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Affiliation(s)
- Perla Farhat
- Biology Department, Baylor University, Waco, TX, 76798, USA.
- Present address: Key Laboratory of Bio-resources and Eco-environment, College of Life Sciences, Sichuan University, Chengdu, Sichuan, 610064, China.
| | - Sonja Siljak-Yakovlev
- Université Paris-Saclay, CNRS, AgroParisTech, Ecologie Systématique Evolution, 91405, Orsay, France
| | - Nicolas Valentin
- Institute of Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Saclay, 91198, Gif-sur-Yvette, France
| | - Carlos Fabregat
- Jardí Botànic de la Universitat de València, 46008, València, Spain
| | | | - Carlos Salazar-Mendias
- Departamento de Biología Animal, Biología Vegetal y Ecología. Universidad de Jaén, 23071, Jaén, Spain
| | - Joaquín Altarejos
- Departamento de Química Inorgánica y Orgánica, Universidad de Jaén, 23071, Jaén, Spain
| | - Robert P Adams
- Biology Department, Baylor University, Waco, TX, 76798, USA
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Zhong C, Li D, Zhang Y. Description of a new natural Sonneratia hybrid from Hainan Island, China. PHYTOKEYS 2020; 154:1-9. [PMID: 32843846 PMCID: PMC7417295 DOI: 10.3897/phytokeys.154.53223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Accepted: 07/07/2020] [Indexed: 06/11/2023]
Abstract
Here, we describe, illustrate and compare a new natural hybrid, Sonneratia × zhongcairongii Y. S. Wang & S. H. Shi (Sonneratiaceae), with its possible parent species. Based on its morphological characteristics and habitat conditions, this taxon is considered to represent a sterile hybrid between S. alba and S. apetala. In China, the new hybrid is only reported in the mangrove forest in Dongzhai Harbour, Hainan Island. It has intermediate characteristics with its parents by elliptical leaf blades, peltate stigma, terminal or axillary inflorescence with 1-3 flower dichasia, cup - shaped calyx (4-6 calyx lobes) and no petals. We also provide a key for the identification of Sonneratia species.
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Affiliation(s)
| | - Donglin Li
- College of Ying-Tong Agricultural Science and Engineering, Shaoguan University, Shaoguan, Guangdong 512005, ChinaLingnan Normal UniversityZhanjiangChina
| | - Ying Zhang
- Life Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong 524048, ChinaHainan Academy of Forestry, Hainan Mangrove Research InstituteHaikouChina
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Zhong C, Li D, Zhang Y. Description of a new natural Sonneratia hybrid from Hainan Island, China. PHYTOKEYS 2020. [PMID: 32843846 DOI: 10.3897/phytokeys.154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Here, we describe, illustrate and compare a new natural hybrid, Sonneratia × zhongcairongii Y. S. Wang & S. H. Shi (Sonneratiaceae), with its possible parent species. Based on its morphological characteristics and habitat conditions, this taxon is considered to represent a sterile hybrid between S. alba and S. apetala. In China, the new hybrid is only reported in the mangrove forest in Dongzhai Harbour, Hainan Island. It has intermediate characteristics with its parents by elliptical leaf blades, peltate stigma, terminal or axillary inflorescence with 1-3 flower dichasia, cup - shaped calyx (4-6 calyx lobes) and no petals. We also provide a key for the identification of Sonneratia species.
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Affiliation(s)
- Cairong Zhong
- Life Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong 524048, China Hainan Academy of Forestry, Hainan Mangrove Research Institute Haikou China
- Hainan Academy of Forestry, Hainan Mangrove Research Institute. Haikou, Hainan, 571100, China Shaoguan University Shaoguan China
- College of Ying-Tong Agricultural Science and Engineering, Shaoguan University, Shaoguan, Guangdong 512005, China Lingnan Normal University Zhanjiang China
| | - Donglin Li
- College of Ying-Tong Agricultural Science and Engineering, Shaoguan University, Shaoguan, Guangdong 512005, China Lingnan Normal University Zhanjiang China
| | - Ying Zhang
- Life Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong 524048, China Hainan Academy of Forestry, Hainan Mangrove Research Institute Haikou China
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Okamoto Y, Fukui A, Hashida T, Shiojiri K, Kuroda C, Tori M, Gong X, Hanai R. Chemical Composition of Intergeneric Hybrids Between Ligularia and Cremanthodium Collected in Sichuan Province of China. Nat Prod Commun 2019. [DOI: 10.1177/1934578x19878931] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Two intergeneric hybrids between Ligularia nelumbifolia and Cremanthodium stenoglossum were examined with respect to the chemical composition of root extracts and the sequences of neutral DNA regions. The DNA data showed that the direction of hybridization was different between the individuals. Eremophilane sesquiterpenes were found in both hybrids and deduced to have come from their Cremanthodium parents, because sesquiterpenes were detected in C. stenoglossum but not in L. nelumbifolia.
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Affiliation(s)
- Yasuko Okamoto
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Japan
| | - Arisa Fukui
- Department of Chemistry, Rikkyo University, Tokyo, Japan
| | - Takuya Hashida
- Department of Chemistry, Rikkyo University, Tokyo, Japan
| | | | - Chiaki Kuroda
- Department of Chemistry, Rikkyo University, Tokyo, Japan
| | - Motoo Tori
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Japan
| | - Xun Gong
- Kunming Institute of Botany, Chinese Academy of Science, China
| | - Ryo Hanai
- Department of Life Science and Research Center of Life Science, Rikkyo University, Tokyo, Japan
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Hornych O, Ekrt L, Riedel F, Koutecký P, Košnar J. Asymmetric hybridization in Central European populations of the Dryopteris carthusiana group. AMERICAN JOURNAL OF BOTANY 2019; 106:1477-1486. [PMID: 31634425 DOI: 10.1002/ajb2.1369] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2019] [Accepted: 08/30/2019] [Indexed: 06/10/2023]
Abstract
PREMISE Hybridization is a key process in plant speciation. Despite its importance, there is no detailed study of hybridization rates in fern populations. A proper estimate of hybridization rates is needed to understand factors regulating hybridization. METHODS We studied hybridization in the European Dryopteris carthusiana group, represented by one diploid and two tetraploid species and their hybrids. We sampled ~100 individuals per population in 40 mixed populations of the D. carthusiana group across Europe. All plants were identified by measuring genome size (DAPI staining) using flow cytometry. To determine the maternal parentage of hybrids, we sequenced the chloroplast region trnL-trnF of all taxa involved. RESULTS We found hybrids in 85% of populations. Triploid D. ×ambroseae occurred in every population that included both parent species and is most abundant when the parent species are equally abundant. By contrast, tetraploid D. ×deweveri was rare (15 individuals total) and triploid D. ×sarvelae was absent. The parentage of hybrid taxa is asymmetric. Despite expectations from previous studies, tetraploid D. dilatata is the predominant male parent of its triploid hybrid. CONCLUSIONS This is a thorough investigation of hybridization rates in natural populations of ferns. Hybridization rates differ greatly even among closely related fern taxa. In contrast to angiosperms, our data suggest that hybridization rates are highest in balanced parent populations and support the notion that some ferns possess very weak barriers to hybridization. Our results from sequencing cpDNA challenge established notions about the correlation of ploidy level and mating tendencies.
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Affiliation(s)
- Ondřej Hornych
- Faculty of Science, University of South Bohemia, Branišovská 1760, České Budějovice, CZ-37005, Czech Republic
| | - Libor Ekrt
- Faculty of Science, University of South Bohemia, Branišovská 1760, České Budějovice, CZ-37005, Czech Republic
| | - Felix Riedel
- Botanischer Garten der Universität Potsdam, Maulbeerallee 3, Potsdam, D-14469, Germany
- Arboretum der Humboldt-Universität zu Berlin, Späthstrasse 80/81, Berlin, D-12437, Germany
| | - Petr Koutecký
- Faculty of Science, University of South Bohemia, Branišovská 1760, České Budějovice, CZ-37005, Czech Republic
| | - Jiří Košnar
- Faculty of Science, University of South Bohemia, Branišovská 1760, České Budějovice, CZ-37005, Czech Republic
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Yang R, Folk R, Zhang N, Gong X. Homoploid hybridization of plants in the Hengduan mountains region. Ecol Evol 2019; 9:8399-8410. [PMID: 31380098 PMCID: PMC6662326 DOI: 10.1002/ece3.5393] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2018] [Revised: 04/24/2019] [Accepted: 05/30/2019] [Indexed: 12/24/2022] Open
Abstract
The Hengduan Mountains Region (HMR) is a major global biodiversity hotspot. Complex tectonic and historical climatic conditions created opportunities for natural interspecific hybridization. Likewise, anthropogenic disturbance potentially raises the frequency of hybridization. Among species studies to date, the frequency of homoploid hybridization appears in the HMR. Of nine taxa in which natural hybridization has been detected, three groups are involved in homoploid hybrid speciation, and species pairs from the remaining six genera suggest that continuous gene flow occurs in hybrid zones. Reproductive isolation may greatly affect the dynamic and architecture of hybrid zones in the HMR. Asymmetrical hybridization and introgression can primarily be attributed to both prezygotic and postzygotic barriers. The frequent observation of such asymmetry may imply that reproductive barrier contributes to maintaining species boundaries in the alpine region. Ecological isolations with environmental disturbance may promote breeding barriers between parental species and hybrids. Hybrid zones may be an important phase for homoploid hybrid speciation. Hybrid zones potentially provided abundant genetic resources for the diversification of the HMR flora. The ecological and molecular mechanisms of control and mediation for natural hybridization will help biologists to understand the formation of biodiversity in the HMR. More researches from ecological and molecular aspects were required in future studies.
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Affiliation(s)
- Rui Yang
- Key Laboratory for Plant Diversity and Biogeography of East AsiaKunming Institute of Botany, Chinese Academy of SciencesKunmingChina
- Key Laboratory of Economic Plants and BiotechnologyKunming Institute of Botany, Chinese Academy of SciencesKunmingChina
- University of Chinese Academy of SciencesBeijingChina
| | - Ryan Folk
- Florida Museum of Natural HistoryUniversity of FloridaGainesvilleFloridaUSA
| | - Ningning Zhang
- Key Laboratory for Plant Diversity and Biogeography of East AsiaKunming Institute of Botany, Chinese Academy of SciencesKunmingChina
- Key Laboratory of Economic Plants and BiotechnologyKunming Institute of Botany, Chinese Academy of SciencesKunmingChina
- University of Chinese Academy of SciencesBeijingChina
| | - Xun Gong
- Key Laboratory for Plant Diversity and Biogeography of East AsiaKunming Institute of Botany, Chinese Academy of SciencesKunmingChina
- Key Laboratory of Economic Plants and BiotechnologyKunming Institute of Botany, Chinese Academy of SciencesKunmingChina
- Yunnan Key Laboratory for Wild Plant ResourcesKunmingChina
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11
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He Z, Li X, Yang M, Wang X, Zhong C, Duke NC, Wu CI, Shi S. Speciation with gene flow via cycles of isolation and migration: insights from multiple mangrove taxa. Natl Sci Rev 2018; 6:275-288. [PMID: 31258952 PMCID: PMC6599600 DOI: 10.1093/nsr/nwy078] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Allopatric speciation requiring an unbroken period of geographical isolation has been the standard model of neo-Darwinism. While doubts have been repeatedly raised, strict allopatry without any gene flow remains a plausible mechanism in most cases. To rigorously reject strict allopatry, genomic sequences superimposed on the geological records of a well-delineated geographical barrier are necessary. The Strait of Malacca, narrowly connecting the Pacific and Indian Ocean coasts, serves at different times either as a geographical barrier or a conduit of gene flow for coastal/marine species. We surveyed 1700 plants from 29 populations of 5 common mangrove species by large-scale DNA sequencing and added several whole-genome assemblies. Speciation between the two oceans is driven by cycles of isolation and gene flow due to the fluctuations in sea level leading to the opening/closing of the Strait to ocean currents. Because the time required for speciation in mangroves is longer than the isolation phases, speciation in these mangroves has proceeded through many cycles of mixing-isolation-mixing, or MIM, cycles. The MIM mechanism, by relaxing the condition of no gene flow, can promote speciation in many more geographical features than strict allopatry can. Finally, the MIM mechanism of speciation is also efficient, potentially yielding mn (m > 1) species after n cycles.
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Affiliation(s)
- Ziwen He
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China
| | - Xinnian Li
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China
| | - Ming Yang
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China
| | - Xinfeng Wang
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China
| | - Cairong Zhong
- Hainan Dongzhai Harbor National Nature Reserve Administration, Haikou 571129, China
| | - Norman C Duke
- Centre for Tropical Water and Aquatic Ecosystem Research, James Cook University, Townsville 4811, Australia
| | - Chung-I Wu
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China.,CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.,Department of Ecology and Evolution, University of Chicago, Chicago IL 60637, USA
| | - Suhua Shi
- State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China
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Saito Y, Ichihara M, Takashima Y, Okamoto Y, Gong X, Hanai R, Kuroda C, Tori M. Chemical constituents of hybrids of Ligularia cyathiceps and L. lamarum/L. subspicata collected in China: Structures of subspicatins M, N, O 1, and O 2, and related compounds. PHYTOCHEMISTRY 2017; 140:69-76. [PMID: 28460262 DOI: 10.1016/j.phytochem.2017.04.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Revised: 04/13/2017] [Accepted: 04/18/2017] [Indexed: 06/07/2023]
Abstract
Three natural hybrids and an introgressed individual of Ligularia were evaluated based on a combination of morphology, root chemicals, and nucleotide sequences of evolutionally neutral regions to understand the chemical outcomes of hybridization and introgression. Six previously undescribed eremophilane sesquiterpenes were isolated from hybrids between L. cyathiceps and L. lamarum/L. subspicata, and benzofurans were isolated from L. subspicata for the first time. Their structures were elucidated based on spectroscopic analyses. Some compounds produced by hybrids have not been detected in either parental species, indicating that the metabolic profile was altered by hybridization and introgression.
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Affiliation(s)
- Yoshinori Saito
- Graduate School of Biomedical Sciences, Nagasaki University, Bunkyo-machi, Nagasaki 852-8521, Japan; Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Yamashiro-cho, Tokushima 770-8514 Japan.
| | - Mayu Ichihara
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Yamashiro-cho, Tokushima 770-8514 Japan
| | - Yuriko Takashima
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Yamashiro-cho, Tokushima 770-8514 Japan
| | - Yasuko Okamoto
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Yamashiro-cho, Tokushima 770-8514 Japan
| | - Xun Gong
- Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, China
| | - Ryo Hanai
- Department of Life Science, Rikkyo University, Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Chiaki Kuroda
- Department of Chemistry, Rikkyo University, Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Motoo Tori
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Yamashiro-cho, Tokushima 770-8514 Japan
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Hanai R, Tanabe S, Aoyama N, Okamoto Y, Tori M, Zhang N, Gong X, Kuroda C. Chemical and Genetic Study of two Ligularia Hybrids in Shangrila County, Yunnan Province, China. Nat Prod Commun 2016. [DOI: 10.1177/1934578x1601100804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The composition of root chemicals was examined for samples of L. cyathiceps × L. duciformis, L. duciformis × L. yunnanensis, and L. yunnanensis. Various furanoeremophilanes were isolated from a sample of L. cyathiceps × L. duciformis and found to be very similar to those isolated from L. cyathiceps. Lupeol and docosyl ferulate were isolated from L. yunnanensis, L. duciformis, and L. duciformis × L. yunnanensis.
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Affiliation(s)
- Ryo Hanai
- Department of Life Science, Rikkyo University, Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Sayako Tanabe
- Department of Chemistry, Rikkyo University, Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Nao Aoyama
- Department of Chemistry, Rikkyo University, Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Yasuko Okamoto
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Yamashiro-cho, Tokushima 770-8514, Japan
| | - Motoo Tori
- Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Yamashiro-cho, Tokushima 770-8514, Japan
| | - Ningning Zhang
- Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, China
| | - Xun Gong
- Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, China
| | - Chiaki Kuroda
- Department of Chemistry, Rikkyo University, Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
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Mori GM, Zucchi MI, Sampaio I, Souza AP. Species distribution and introgressive hybridization of two Avicennia species from the Western Hemisphere unveiled by phylogeographic patterns. BMC Evol Biol 2015; 15:61. [PMID: 25886804 PMCID: PMC4394560 DOI: 10.1186/s12862-015-0343-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Accepted: 03/30/2015] [Indexed: 11/18/2022] Open
Abstract
Background Mangrove plants grow in the intertidal zone in tropical and subtropical regions worldwide. The global latitudinal distribution of the mangrove is mainly influenced by climatic and oceanographic features. Because of current climate changes, poleward range expansions have been reported for the major biogeographic regions of mangrove forests in the Western and Eastern Hemispheres. There is evidence that mangrove forests also responded similarly after the last glaciation by expanding their ranges. In this context, the use of genetic tools is an informative approach for understanding how historical processes and factors impact the distribution of mangrove species. We investigated the phylogeographic patterns of two Avicennia species, A. germinans and A. schaueriana, from the Western Hemisphere using nuclear and chloroplast DNA markers. Results Our results indicate that, although Avicennia bicolor, A. germinans and A. schaueriana are independent lineages, hybridization between A. schaueriana and A. germinans is a relevant evolutionary process. Our findings also reinforce the role of long-distance dispersal in widespread mangrove species such as A. germinans, for which we observed signs of transatlantic dispersal, a process that has, most likely, contributed to the breadth of the distribution of A. germinans. However, along the southern coast of South America, A. schaueriana is the only representative of the genus. The distribution patterns of A. germinans and A. schaueriana are explained by their different responses to past climate changes and by the unequal historical effectiveness of relative gene flow by propagules and pollen. Conclusions We observed that A. bicolor, A. germinans and A. schaueriana are three evolutionary lineages that present historical and ongoing hybridization on the American continent. We also inferred a new evidence of transatlantic dispersal for A. germinans, which may have contributed to its widespread distribution. Despite the generally wider distribution of A. germinans, only A. schaueriana is found in southern South America, which may be explained by the different demographic histories of these two species and the larger proportion of gene flow produced by propagules rather than pollen in A. schaueriana. These results highlight that these species responded in different ways to past events, indicating that such differences may also occur in the currently changing world. Electronic supplementary material The online version of this article (doi:10.1186/s12862-015-0343-z) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Gustavo M Mori
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, CEP 13083-875, CP 6010, Campinas, São Paulo, Brazil.
| | - Maria I Zucchi
- Pólo Centro Sul, Agência Paulista de Tecnologia dos Agronegócios. Piracicaba, CEP 13400-970, São Paulo, Brazil.
| | - Iracilda Sampaio
- Universidade Federal do Pará, Campus de Bragança, Instituto de Estudos Costeiros, CEP 68600-000, Bragança, Pará, Brazil.
| | - Anete P Souza
- Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, CEP 13083-875, CP 6010, Campinas, São Paulo, Brazil. .,Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, CEP 13083-862, Campinas, São Paulo, Brazil.
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Multiple-geographic-scale genetic structure of two mangrove tree species: the roles of mating system, hybridization, limited dispersal and extrinsic factors. PLoS One 2015; 10:e0118710. [PMID: 25723532 PMCID: PMC4344226 DOI: 10.1371/journal.pone.0118710] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2014] [Accepted: 01/07/2015] [Indexed: 12/05/2022] Open
Abstract
Mangrove plants comprise a unique group of organisms that grow within the intertidal zones of tropical and subtropical regions and whose distributions are influenced by both biotic and abiotic factors. To understand how these extrinsic and intrinsic processes influence a more fundamental level of the biological hierarchy of mangroves, we studied the genetic diversity of two Neotropical mangrove trees, Avicenniagerminans and A. schaueriana, using microsatellites markers. As reported for other sea-dispersed species, there was a strong differentiation between A. germinans and A. schaueriana populations sampled north and south of the northeastern extremity of South America, likely due to the influence of marine superficial currents. Moreover, we observed fine-scale genetic structures even when no obvious physical barriers were present, indicating pollen and propagule dispersal limitation, which could be explained by isolation-by-distance coupled with mating system differences. We report the first evidence of ongoing hybridization between Avicennia species and that these hybrids are fertile, although this interspecific crossing has not contributed to an increase in the genetic diversity the populations where A. germinans and A. schaueriana hybridize. These findings highlight the complex interplay between intrinsic and extrinsic factors that shape the distribution of the genetic diversity in these sea-dispersed colonizer species.
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Yu J, Kuroda C, Gong X. Natural hybridization and introgression between Ligularia cymbulifera and L. tongolensis (Asteraceae, Senecioneae) in four different locations. PLoS One 2014; 9:e115167. [PMID: 25551379 PMCID: PMC4281107 DOI: 10.1371/journal.pone.0115167] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2014] [Accepted: 11/19/2014] [Indexed: 11/18/2022] Open
Abstract
Natural hybridization has been considered to represent an important factor influencing the high diversity of the genus Ligularia Cass. in the Hengduan Mountains, China. Natural hybridization has been confirmed to occur frequently in Ligularia. To date, however, it has been demonstrated only within a single population. In this paper, we present evidence of natural hybridization in Ligularia from four different locations. The internal transcribed spacer (ITS) region of the nuclear ribosomal DNA and three chloroplast intergenic spacers (trnK-rps16, trnL-rpl32 and trnQ-5'rps16) of 149 accessions of putative hybrids and their putative parents (L. cymbulifera and L. tongolensis) were analyzed for evidence of hybridization. The ITS data clearly distinguished two putative parental species and sympatric L. vellerea and supported the hypothesis that those morphological intermediates were products of natural hybridization between L. cymbulifera and L. tongolensis. Moreover, several identified morphological parents were actual introgressed products. Because of hybridization and introgression, chloroplast DNA sequences generated a poorly resolved network. The present results indicate that varying degrees of hybridization and introgression occur differently depending on the habitat context. We conclude that gene flow caused by natural hybridization in Ligularia indeed plays an important role in the species diversity.
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Affiliation(s)
- Jiaojun Yu
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, P. R. China
- University of Chinese Academy of Sciences, Beijing, P. R. China
| | - Chiaki Kuroda
- Department of Chemistry, Rikkyo University, Tokyo, Japan
| | - Xun Gong
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, P. R. China
- * E-mail:
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Shimizu A, Watanabe S, Hanai R, Okamoto Y, Tori M, Gong X, Kuroda C. Chemical and Genetic Studies on Hybrid ofLigularia subspicataandLigularia cyathicepsCollected in Yunnan Province of China. Chem Biodivers 2014; 11:1438-48. [DOI: 10.1002/cbdv.201400133] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2014] [Indexed: 11/09/2022]
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Ma Y, Xie W, Tian X, Sun W, Wu Z, Milne R. Unidirectional hybridization and reproductive barriers between two heterostylous primrose species in north-west Yunnan, China. ANNALS OF BOTANY 2014; 113:763-75. [PMID: 24492637 PMCID: PMC3962241 DOI: 10.1093/aob/mct312] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2013] [Accepted: 12/13/2013] [Indexed: 05/14/2023]
Abstract
BACKGROUND AND AIMS Heteromorphy in flowers has a profound effect on breeding patterns within a species, but little is known about how it affects reproductive barriers between species. The heterostylous genus Primula is very diverse in the Himalaya region, but hybrids there have been little researched. This study examines in detail a natural hybrid zone between P. beesiana and P. bulleyana. METHODS Chloroplast sequencing, AFLP (amplified fragment length polymorphism) markers and morphological comparisons were employed to characterize putative hybrids in the field, using synthetic F1s from hand pollination as controls. Pollinator visits to parent species and hybrids were observed in the field. Hand pollinations were conducted to compare pollen tube growth, seed production and seed viability for crosses involving different morphs, species and directions of crossing. KEY RESULTS Molecular data revealed all hybrid derivatives examined to be backcrosses of first or later generations towards P. bulleyana: all had the chloroplast DNA (cpDNA) of this species. Some individuals had morphological traits suggesting they were hybrids, but they were genetically similar to P. bulleyana; they might have been advanced generation backcrosses. Viable F1s could not be produced with P. bulleyana pollen on P. beesiana females, irrespective of the flower morphs used. Within-morph crosses for each species had very low (<10 %) seed viability, whereas crosses between pin P. bulleyana (female) and pin P. beesiana had a higher seed viability of 30 %. Thus genetic incompatibility mechanisms back up mechanical barriers to within-morph crosses in each species, but are not the same between the two species. The two species share their main pollinators, and pollinators were observed to fly between P. bulleyana and hybrids, suggesting that pollinator behaviour may not be an important isolating factor. CONCLUSIONS Hybridization is strongly asymmetric, with P. bulleyana the only possible mother and all detected hybrids being backcrosses in this direction. Partial ecological isolation and inhibition of heterospecific pollen, and possibly complete barriers to F1 formation on P. beesiana, may be enough to make F1 formation very rare in these species. Therefore, with no F1 detected, this hybrid zone may have a finite life span as successive generations become more similar to P. bulleyana.
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Affiliation(s)
- Yongpeng Ma
- Kunming Botanical Garden, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, PR China
| | - Weijia Xie
- Flower research institute, Yunnan Academy of Agriculture Sciences, Kunming 650201, PR China
| | - Xiaoling Tian
- Kunming Botanical Garden, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, PR China
| | - Weibang Sun
- Kunming Botanical Garden, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, PR China
| | - Zhikun Wu
- Kunming Botanical Garden, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, PR China
| | - Richard Milne
- Institute of Molecular Plant Sciences, University of Edinburgh, Edinburgh EH9 3JH, UK
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Wang Q, Abbott RJ, Yu QS, Lin K, Liu JQ. Pleistocene climate change and the origin of two desert plant species, Pugionium cornutum and Pugionium dolabratum (Brassicaceae), in northwest China. THE NEW PHYTOLOGIST 2013; 199:277-287. [PMID: 23550542 DOI: 10.1111/nph.12241] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2013] [Accepted: 02/22/2013] [Indexed: 05/14/2023]
Abstract
Pleistocene climate change has had an important effect in shaping intraspecific genetic variation in many species; however, its role in driving speciation is less clear. We examined the possibility of a Pleistocene origin of the only two representatives of the genus Pugionium (Brassicaceae), Pugionium cornutum and Pugionium dolabratum, which occupy different desert habitats in northwest China. We surveyed sequence variation for internal transcribed spacer (ITS), three chloroplast (cp) DNA fragments, and eight low-copy nuclear genes among individuals sampled from 11 populations of each species across their geographic ranges. One ITS mutation distinguished the two species, whereas mutations in cpDNA and the eight low-copy nuclear gene sequences were not species-specific. Although interspecific divergence varied greatly among nuclear gene sequences, in each case divergence was estimated to have occurred within the Pleistocene when deserts expanded in northwest China. Our findings point to the importance of Pleistocene climate change, in this case an increase in aridity, as a cause of speciation in Pugionium as a result of divergence in different habitats that formed in association with the expansion of deserts in China.
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Affiliation(s)
- Qian Wang
- Key Laboratory for Bio-resources and Eco-environment, College of Life Science, Sichuan University, Chengdu, 6100065, China
| | - Richard J Abbott
- School of Biology, University of St Andrews, Mitchell Building, St Andrews, Fife, KY16 9TH, UK
| | - Qiu-Shi Yu
- State Key Laboratory Breeding Base of Desertification and Aeolian Sand Disaster Combating, Gansu Desert Control Research Institute, Lanzhou, 730000, Gansu, China
| | - Kao Lin
- Laboratory of Evolutionary Genomics, CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, Shanghai, China
| | - Jian-Quan Liu
- Key Laboratory for Bio-resources and Eco-environment, College of Life Science, Sichuan University, Chengdu, 6100065, China
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Urashi C, Teshima KM, Minobe S, Koizumi O, Inomata N. Inferences of evolutionary history of a widely distributed mangrove species, Bruguiera gymnorrhiza, in the Indo-West Pacific region. Ecol Evol 2013; 3:2251-61. [PMID: 23919167 PMCID: PMC3728962 DOI: 10.1002/ece3.624] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2013] [Revised: 05/01/2013] [Accepted: 05/06/2013] [Indexed: 11/17/2022] Open
Abstract
Inference of genetic structure and demographic history is fundamental issue in evolutionary biology. We examined the levels and patterns of genetic variation of a widespread mangrove species in the Indo-West Pacific region, Bruguiera gymnorrhiza, using ten nuclear gene regions. Genetic variation of individual populations covering its distribution range was low, but as the entire species it was comparable to other plant species. Genetic differentiation among the investigated populations was high. They could be divided into two genetic clusters: the West and East clusters of the Malay Peninsula. Our results indicated that these two genetic clusters derived from their ancestral population whose effective size of which was much larger compared to the two extant clusters. The point estimate of speciation time between B. gymnorrhiza and Bruguiera sexangula was two times older than that of divergence time between the two clusters. Migration from the West cluster to the East cluster was much higher than the opposite direction but both estimated migration rates were low. The past Sundaland and/or the present Malay Peninsula are likely to prevent gene flow between the West and East clusters and function as a geographical or land barrier.
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Affiliation(s)
- Chie Urashi
- Department of Environmental Science, International College of Arts and Sciences, Fukuoka Women's University 1-1-1 Kasumigaoka, Higashi-ku, Fukuoka, 813-8529, Japan
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Bossu CM, Near TJ. Characterization of a contemporaneous hybrid zone between two darter species (Etheostoma bison and E. caeruleum) in the Buffalo River System. Genetica 2013; 141:75-88. [DOI: 10.1007/s10709-013-9707-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2011] [Accepted: 02/14/2013] [Indexed: 12/01/2022]
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Hanai R, Yamada H, Suzuki Y, Nagano H, Kawahara T, Yu JJ, Gong X, Kuroda C. Chemical Constituents of Ligularia Nelumbifolia and L. Subspicata Hybrid Collected in Shangrila County, Yunnan Province of China. Nat Prod Commun 2012. [DOI: 10.1177/1934578x1200701204] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Four Ligularia individuals possessing morphological characters of both L. nelumbifolia and L. subspicata were discovered in Shangrila County, Yunnan Province, China. DNA sequencing showed that the specimens were hybrids of the two species and their maternal parent was L. subspicata. The chemical composition of the root extract was examined for three of them as well as L. nelumbifolia and L. subspicata collected sympatrically. Nelumol was isolated from L. nelumbifolia, and furanoeremophilanes from L. subspicata. While nelumol and furanoeremophilanes were detected in two of the hybrid samples, only furanoeremophilanes were detected in the others.
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Affiliation(s)
- Ryo Hanai
- Department of Life Science and Research Center for Life Science, Rikkyo University, Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Hiroka Yamada
- Department of Chemistry, Ochanomizu University, Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan
| | - Yurika Suzuki
- Department of Chemistry, and Research Center for Smart Molecules, Rikkyo University, Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Hajime Nagano
- Department of Chemistry, Ochanomizu University, Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan
| | - Takayuki Kawahara
- Shikoku Research Center, Forestry and Forest Products Research Institute, Asakuranishi-machi, Kochi, Kochi 780-8077, Japan
| | - Jiao-Jun Yu
- Kunming Institute of Botany, Chinese Academy of Science, Kunming 650204, China
| | - Xun Gong
- Kunming Institute of Botany, Chinese Academy of Science, Kunming 650204, China
| | - Chiaki Kuroda
- Department of Chemistry, and Research Center for Smart Molecules, Rikkyo University, Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
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Sun M, Lo EYY. Genomic markers reveal introgressive hybridization in the Indo-West Pacific mangroves: a case study. PLoS One 2011; 6:e19671. [PMID: 21589927 PMCID: PMC3092761 DOI: 10.1371/journal.pone.0019671] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2011] [Accepted: 04/03/2011] [Indexed: 11/18/2022] Open
Abstract
Biodiversity of mangrove ecosystems is difficult to assess, at least partly due to lack of genetic verification of morphology-based documentation of species. Natural hybridization, on the one hand, plays an important role in evolution as a source of novel gene combinations and a mechanism of speciation. However, on the other hand, recurrent introgression allows gene flow between species and could reverse the process of genetic differentiation among populations required for speciation. To understand the dynamic evolutionary consequences of hybridization, this study examines genomic structure of hybrids and parental species at the population level. In the Indo-West Pacific, Bruguiera is one of the dominant mangrove genera and species ranges overlap extensively with one another. Morphological intermediates between sympatric Bruguiera gymnorrhiza and Bruguiera sexangula have been reported as a variety of B. sexangula or a new hybrid species, B. × rhynchopetala. However, the direction of hybridization and extent of introgression are unclear. A large number of species-specific inter-simple sequence repeat (ISSR) markers were found in B. gymnorrhiza and B. sexangula, and the additive ISSR profiling of B. × rhynchopetala ascertained its hybrid status and identified its parental origin. The varying degree of scatterness among hybrid individuals in Principal Coordinate Analysis and results from NewHybrids analysis indicate that B. × rhynchopetala comprises different generations of introgressants in addition to F1s. High genetic relatedness between B. × rhynchopetala and B. gymnorrhiza based on nuclear and chloroplast sequences suggests preferential hybrid backcrosses to B. gymnorrhiza. We conclude that B. × rhynchopetala has not evolved into an incipient hybrid species, and its persistence can be explained by recurrent hybridization and introgression. Genomic data provide insights into the hybridization dynamics of mangrove plants. Such information can assist in biodiversity assessment by helping detect novel taxa and/or define species boundaries.
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Affiliation(s)
- Mei Sun
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America.
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Ma Y, Milne RI, Zhang C, Yang J. Unusual patterns of hybridization involving a narrow endemic Rhododendron species (Ericaceae) in Yunnan, China. AMERICAN JOURNAL OF BOTANY 2010; 97:1749-1757. [PMID: 21616807 DOI: 10.3732/ajb.1000018] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
PREMISE OF THE STUDY One potential threat to rare species is genetic swamping caused by hybridization, but few studies have quantified this threat. Rhododendron cyanocarpum is a narrow endemic species that occurs sympatrically with potentially interfertile congeners throughout its range within Yunnan, China. We searched the entire distribution of R. cyanocarpum for hybrids and examined the patterns of hybridization to assess potential threat from hybridization. • METHODS In a comprehensive field survey, we detected only one instance of hybridization involving R. cyanocarpum, with R. delavayi, at Huadianba near Dali. Material of both species and putative hybrids was examined using morphology, chloroplast DNA, nuclear ribosomal DNA, and Bayesian analysis of AFLP profiles. • KEY RESULTS Of 10 putative hybrids, two were F(1)(')s and at least seven were F(2)(')s. Four backcrosses to R. delavayi were detected among material with R. delavayi-like morphology within the hybrid zone. Backcrosses to R. cyanocarpum were not detected. Therefore F(2)(')s outnumbered all other classes within the hybrid zone, a situation not previously confirmed for plants and extremely rare generally. Hybridization was asymmetrical, with R. delavayi as the maternal parent in all but one of the hybrids detected. • CONCLUSIONS Although natural hybridization is common in Rhododendron, it is rare in R. cyanocarpum and is apparently not accompanied by backcrossing toward R. cyanocarpum. Hence, there is no immediate risk of genetic swamping, unless habitat disturbance increases and changes the patterns of hybridization. Our study is the first to report a plant hybrid zone dominated by F(2) hybrids. This pattern might contribute to species barrier maintenance.
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Affiliation(s)
- Yongpeng Ma
- Kunming Botanic Garden, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
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Lo EYY. Testing hybridization hypotheses and evaluating the evolutionary potential of hybrids in mangrove plant species. J Evol Biol 2010; 23:2249-2261. [PMID: 20796134 DOI: 10.1111/j.1420-9101.2010.02087.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Natural hybridization is of marked importance from global to local biological diversity. In mangroves, species ranges overlap extensively with one another and species share a long overlap of flowering time. Although hybridization has been suggested, patterns of hybridization and the evolutionary potential of hybrids are not yet fully understood. This study provides molecular evidence for the parental origins and status of hybrids in the dominant mangrove genus Rhizophora based on comparisons of chloroplast and nuclear phylogenies and estimations of genetic relatedness and structure from inter-simple sequence repeat (ISSR) markers. Phylogenetic analyses indicate that almost all species can act as maternal parents to hybrids and that hybridization can be bidirectional. Bayesian analyses indicate that hybrids are simple F(1) s, and no trace of backcrossing was detected within populations. Hybridization, for the most part, occurs almost only locally and dispersal of hybrid individuals is limited beyond the hybrid sites.
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Affiliation(s)
- E Y Y Lo
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA.
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Zhou R, Qiu S, Zhang M, Guo M, Chen S, Shi S. Sonneratia ovata Backer–A genetically depauperate mangrove species. BIOCHEM SYST ECOL 2010. [DOI: 10.1016/j.bse.2010.04.012] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Lepais O, Petit RJ, Guichoux E, Lavabre JE, Alberto F, Kremer A, Gerber S. Species relative abundance and direction of introgression in oaks. Mol Ecol 2009; 18:2228-42. [PMID: 19302359 DOI: 10.1111/j.1365-294x.2009.04137.x] [Citation(s) in RCA: 252] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Successful hybridisation and subsequent introgression lead to the transfer of genetic material across species boundaries. In this process, species relative abundance can play a significant role. If one species is less abundant than the other, its females will receive many heterospecific gametes, increasing mate-recognition errors and thus hybridisation rate. Moreover, first-generation hybrids will also more likely mate with the more abundant species, leading to asymmetric introgression. These predictions have important fundamental consequences, especially during biological invasions or when a rare species threatened by extinction is surrounded by individuals from a related species. However, experimental tests in nature of the importance of the relative abundance of each species on hybridisation dynamics remain scarce. We assess here the impact of species relative abundance on hybridisation dynamics among four species from the European white oak species complex. A total of 2107 oak trees were genotyped at 10 microsatellite markers and Bayesian clustering methods were used to identify reference trees of each species. We then used these reference trees to simulate purebred and hybrid genotypes to determine optimal threshold for genetic assignment. With this approach, we found widespread evidence of hybridisation between all studied oak species, with high occurrence of hybrids, varying from 11% to 31% according to stand and sampling strategies. This finding suggests that hybridisation is a common phenomenon that plays a significant role in evolution of this oak species complex. In addition, we demonstrate a strong impact of species abundance on both hybridisation rate and introgression directionality.
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Affiliation(s)
- O Lepais
- INRA, UMR 1202 BIOGECO, Cestas, France
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