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For: Yellaboina S, Ranjan S, Chakhaiyar P, Hasnain SE, Ranjan A. Prediction of DtxR regulon: identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae. BMC Microbiol 2004;4:38. [PMID: 15447793 DOI: 10.1186/1471-2180-4-38] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2004] [Accepted: 09/24/2004] [Indexed: 11/10/2022]  Open
Number Cited by Other Article(s)
1
Polymorphisms of dtxR Gene of Corynebacterium diphtheriae Isolated from Diphtheria Outbreak in Indonesia. Jundishapur J Microbiol 2022. [DOI: 10.5812/jjm-121534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
2
Möller J, Nosratabadi F, Musella L, Hofmann J, Burkovski A. Corynebacterium diphtheriae Proteome Adaptation to Cell Culture Medium and Serum. Proteomes 2021;9:proteomes9010014. [PMID: 33805816 PMCID: PMC8005964 DOI: 10.3390/proteomes9010014] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 03/09/2021] [Accepted: 03/10/2021] [Indexed: 12/03/2022]  Open
3
Sharma NC, Efstratiou A, Mokrousov I, Mutreja A, Das B, Ramamurthy T. Diphtheria. Nat Rev Dis Primers 2019;5:81. [PMID: 31804499 DOI: 10.1038/s41572-019-0131-y] [Citation(s) in RCA: 87] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 10/25/2019] [Indexed: 01/09/2023]
4
Bethke J, Yáñez AJ, Avendaño-Herrera R. Comparative Genomic Analysis of Two Chilean Renibacterium salmoninarum Isolates and the Type Strain ATCC 33209T. Genome Biol Evol 2018;10:1816-1822. [PMID: 29982426 PMCID: PMC6057502 DOI: 10.1093/gbe/evy138] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/29/2018] [Indexed: 11/29/2022]  Open
5
Fang FC, Frawley ER, Tapscott T, Vázquez-Torres A. Bacterial Stress Responses during Host Infection. Cell Host Microbe 2016;20:133-43. [PMID: 27512901 PMCID: PMC4985009 DOI: 10.1016/j.chom.2016.07.009] [Citation(s) in RCA: 202] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
6
AlQuraishi M, Tang S, Xia X. An affinity-structure database of helix-turn-helix: DNA complexes with a universal coordinate system. BMC Bioinformatics 2015;16:390. [PMID: 26586237 PMCID: PMC4653904 DOI: 10.1186/s12859-015-0819-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Accepted: 11/11/2015] [Indexed: 11/28/2022]  Open
7
TiO2 photocatalysis damages lipids and proteins in Escherichia coli. Appl Environ Microbiol 2014;80:2573-81. [PMID: 24532071 DOI: 10.1128/aem.03995-13] [Citation(s) in RCA: 118] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
8
Cloning, expression, purification and characterization of an iron-dependent regulator protein from Thermobifida fusca. Protein Expr Purif 2013;92:190-4. [PMID: 24084005 DOI: 10.1016/j.pep.2013.09.010] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2013] [Revised: 09/15/2013] [Accepted: 09/17/2013] [Indexed: 11/22/2022]
9
Merchant AT, Spatafora GA. A role for the DtxR family of metalloregulators in gram-positive pathogenesis. Mol Oral Microbiol 2013;29:1-10. [PMID: 24034418 DOI: 10.1111/omi.12039] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/03/2013] [Indexed: 11/28/2022]
10
AlQuraishi M, McAdams HH. Three enhancements to the inference of statistical protein-DNA potentials. Proteins 2012;81:426-42. [PMID: 23042633 DOI: 10.1002/prot.24201] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2012] [Revised: 09/17/2012] [Accepted: 10/02/2012] [Indexed: 12/28/2022]
11
Leigh JW, Lapointe FJ, Lopez P, Bapteste E. Evaluating phylogenetic congruence in the post-genomic era. Genome Biol Evol 2011;3:571-87. [PMID: 21712432 PMCID: PMC3156567 DOI: 10.1093/gbe/evr050] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/27/2011] [Indexed: 12/04/2022]  Open
12
Trost E, Ott L, Schneider J, Schröder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Dorella FA, Rocha FS, Soares SDC, D'Afonseca V, Miyoshi A, Ruiz J, Silva A, Azevedo V, Burkovski A, Guiso N, Join-Lambert OF, Kayal S, Tauch A. The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics 2010;11:728. [PMID: 21192786 PMCID: PMC3022926 DOI: 10.1186/1471-2164-11-728] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2010] [Accepted: 12/30/2010] [Indexed: 11/10/2022]  Open
13
Schliep K, Lopez P, Lapointe FJ, Bapteste E. Harvesting evolutionary signals in a forest of prokaryotic gene trees. Mol Biol Evol 2010;28:1393-405. [PMID: 21172835 DOI: 10.1093/molbev/msq323] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
14
Torrents E, Sjöberg BM. Antibacterial activity of radical scavengers against class Ib ribonucleotide reductase from Bacillus anthracis. Biol Chem 2010;391:229-234. [PMID: 20030587 DOI: 10.1515/bc.2010.017] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
15
Spinler JK, Zajdowicz SLW, Haller JC, Oram DM, Gill RE, Holmes RK. Development and use of a selectable, broad-host-range reporter transposon for identifying environmentally regulated promoters in bacteria. FEMS Microbiol Lett 2009;291:143-50. [PMID: 19146571 DOI: 10.1111/j.1574-6968.2008.01430.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
16
Ranjan S, Yellaboina S, Ranjan A. IdeR in Mycobacteria: From Target Recognition to Physiological Function. Crit Rev Microbiol 2008;32:69-75. [PMID: 16809230 DOI: 10.1080/10408410600709768] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
17
O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo MJ, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'Guessan AL, Lovley DR. Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation. Environ Microbiol 2008;10:1218-30. [PMID: 18279349 DOI: 10.1111/j.1462-2920.2007.01537.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
18
Akhter Y, Yellaboina S, Farhana A, Ranjan A, Ahmed N, Hasnain SE. Genome scale portrait of cAMP-receptor protein (CRP) regulons in mycobacteria points to their role in pathogenesis. Gene 2007;407:148-58. [PMID: 18022770 DOI: 10.1016/j.gene.2007.10.017] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2007] [Revised: 10/02/2007] [Accepted: 10/05/2007] [Indexed: 10/22/2022]
19
Swaminathan A, Mandlik A, Swierczynski A, Gaspar A, Das A, Ton-That H. Housekeeping sortase facilitates the cell wall anchoring of pilus polymers in Corynebacterium diphtheriae. Mol Microbiol 2007;66:961-74. [PMID: 17919283 DOI: 10.1111/j.1365-2958.2007.05968.x] [Citation(s) in RCA: 99] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
20
Ranjan S, Gundu RK, Ranjan A. MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria. BMC Bioinformatics 2006;7 Suppl 5:S9. [PMID: 17254314 PMCID: PMC1764487 DOI: 10.1186/1471-2105-7-s5-s9] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
21
Ranjan S, Seshadri J, Vindal V, Yellaboina S, Ranjan A. iCR: a web tool to identify conserved targets of a regulatory protein across the multiple related prokaryotic species. Nucleic Acids Res 2006;34:W584-7. [PMID: 16845075 PMCID: PMC1538900 DOI: 10.1093/nar/gkl202] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
22
Yellaboina S, Ranjan S, Vindal V, Ranjan A. Comparative analysis of iron regulated genes in mycobacteria. FEBS Lett 2006;580:2567-76. [PMID: 16631750 DOI: 10.1016/j.febslet.2006.03.090] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2006] [Revised: 03/20/2006] [Accepted: 03/28/2006] [Indexed: 11/22/2022]
23
Prakash P, Yellaboina S, Ranjan A, Hasnain SE. Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames. Bioinformatics 2005;21:2161-6. [PMID: 15746274 DOI: 10.1093/bioinformatics/bti375] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
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