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Aly NA, Luo YS, Liu Y, Casillas G, McDonald TJ, Kaihatu JM, Jun M, Ellis N, Gossett S, Dodds JN, Baker ES, Bhandari S, Chiu WA, Rusyn I. Temporal and spatial analysis of per and polyfluoroalkyl substances in surface waters of Houston ship channel following a large-scale industrial fire incident. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 265:115009. [PMID: 32574947 PMCID: PMC7857671 DOI: 10.1016/j.envpol.2020.115009] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 06/06/2020] [Accepted: 06/08/2020] [Indexed: 05/07/2023]
Abstract
Firefighting foams contain per- and polyfluoroalkyl substances (PFAS) - a class of compounds widely used as surfactants. PFAS are persistent organic pollutants that have been reported in waterways and drinking water systems across the United States. These substances are of interest to both regulatory agencies and the general public because of their persistence in the environment and association with adverse health effects. PFAS can be released in large quantities during industrial incidents because they are present in most firefighting foams used to suppress chemical fires; however, little is known about persistence of PFAS in public waterways after such events. In response to large-scale fires at Intercontinental Terminal Company (ITC) in Houston, Texas in March 2019, almost 5 million liters of class B firefighting foams were used. Much of this material flowed into the Houston Ship Channel and Galveston Bay (HSC/GB) and concerns were raised about the levels of PFAS in these water bodies that have commercial and recreational uses. To evaluate the impact of the ITC incident response on PFAS levels in HSC/GB, we collected 52 surface water samples from 12 locations over a 6-month period after the incident. Samples were analyzed using liquid chromatography-mass spectrometry to evaluate 27 PFAS, including perfluorocarboxylic acids, perfluorosulfonates and fluorotelomers. Among PFAS that were evaluated, 6:2 FTS and PFOS were detected at highest concentrations. Temporal and spatial profiles of PFAS were established; we found a major peak in the level of many PFAS in the days and weeks after the incident and a gradual decline over several months with patterns consistent with the tide- and wave-associated water movements. This work documents the impact of a large-scale industrial fire, on the environmental levels of PFAS, establishes a baseline concentration of PFAS in HSC/GB, and highlights the critical need for development of PFAS water quality standards.
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Affiliation(s)
- Noor A Aly
- Interdisciplinary Faculty of Toxicology, Texas A&M University, College Station, TX, USA; Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX, USA
| | - Yu-Syuan Luo
- Interdisciplinary Faculty of Toxicology, Texas A&M University, College Station, TX, USA; Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX, USA
| | - Yina Liu
- Geochemical and Environmental Research Group, Texas A&M University, College Station, TX, USA; Department of Oceanography, Texas A&M University, College Station, TX, USA
| | - Gaston Casillas
- Interdisciplinary Faculty of Toxicology, Texas A&M University, College Station, TX, USA; Department of Environmental and Occupational Health, Texas A&M University, College Station, TX, USA
| | - Thomas J McDonald
- Department of Environmental and Occupational Health, Texas A&M University, College Station, TX, USA
| | - James M Kaihatu
- Zachry Department of Civil & Environmental Engineering, Texas A&M University, College Station, TX, USA
| | - Mikyoung Jun
- Department of Statistics, Texas A&M University, College Station, TX, USA
| | | | | | - James N Dodds
- Department of Chemistry, North Carolina State University, Raleigh, NC, USA
| | - Erin S Baker
- Department of Chemistry, North Carolina State University, Raleigh, NC, USA
| | - Sharmila Bhandari
- Interdisciplinary Faculty of Toxicology, Texas A&M University, College Station, TX, USA; Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX, USA
| | - Weihsueh A Chiu
- Interdisciplinary Faculty of Toxicology, Texas A&M University, College Station, TX, USA; Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX, USA
| | - Ivan Rusyn
- Interdisciplinary Faculty of Toxicology, Texas A&M University, College Station, TX, USA; Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX, USA.
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Saran S, Singh P, Kumar V, Chauhan P. Review of Geospatial Technology for Infectious Disease Surveillance: Use Case on COVID-19. JOURNAL OF THE INDIAN SOCIETY OF REMOTE SENSING 2020; 48. [PMCID: PMC7433774 DOI: 10.1007/s12524-020-01140-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
This paper discusses on the increasing relevancy of geospatial technologies such as geographic information system (GIS) in the public health domain, particularly for the infectious disease surveillance and modelling strategies. Traditionally, the disease mapping tasks have faced many challenges—(1) authors rarely documented the evidence that were used to create map, (2) before evolution of GIS, many errors aroused in mapping tasks which were expanded extremely at global scales, and (3) there were no fidelity assessment of maps which resulted in inaccurate precision. This study on infectious diseases geo-surveillance is divided into four broad sections with emphasis on handling geographical and temporal issues to help in public health decision-making and planning policies: (1) geospatial mapping of diseases using its spatial and temporal information to understand their behaviour across geography; (2) the citizen’s involvement as volunteers in giving health and disease data to assess the critical situation for disease’s spread and prevention in neighbourhood effect; (3) scientific analysis of health-related behaviour using mathematical epidemiological and geo-statistical approaches with (4) capacity building program. To illustrate each theme, recent case studies are cited and case studies are performed on COVID-19 to demonstrate selected models.
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Affiliation(s)
- Sameer Saran
- Indian Institute of Remote Sensing, Indian Space Research Organisation, #4, Kalidas Road, Dehradun, 248001 India
| | - Priyanka Singh
- Indian Institute of Remote Sensing, Indian Space Research Organisation, #4, Kalidas Road, Dehradun, 248001 India
| | - Vishal Kumar
- Indian Institute of Remote Sensing, Indian Space Research Organisation, #4, Kalidas Road, Dehradun, 248001 India
| | - Prakash Chauhan
- Indian Institute of Remote Sensing, Indian Space Research Organisation, #4, Kalidas Road, Dehradun, 248001 India
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Beard R, Wentz E, Scotch M. A systematic review of spatial decision support systems in public health informatics supporting the identification of high risk areas for zoonotic disease outbreaks. Int J Health Geogr 2018; 17:38. [PMID: 30376842 PMCID: PMC6208014 DOI: 10.1186/s12942-018-0157-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 10/19/2018] [Indexed: 12/13/2022] Open
Abstract
BACKGROUND Zoonotic diseases account for a substantial portion of infectious disease outbreaks and burden on public health programs to maintain surveillance and preventative measures. Taking advantage of new modeling approaches and data sources have become necessary in an interconnected global community. To facilitate data collection, analysis, and decision-making, the number of spatial decision support systems reported in the last 10 years has increased. This systematic review aims to describe characteristics of spatial decision support systems developed to assist public health officials in the management of zoonotic disease outbreaks. METHODS A systematic search of the Google Scholar database was undertaken for published articles written between 2008 and 2018, with no language restriction. A manual search of titles and abstracts using Boolean logic and keyword search terms was undertaken using predefined inclusion and exclusion criteria. Data extraction included items such as spatial database management, visualizations, and report generation. RESULTS For this review we screened 34 full text articles. Design and reporting quality were assessed, resulting in a final set of 12 articles which were evaluated on proposed interventions and identifying characteristics were described. Multisource data integration, and user centered design were inconsistently applied, though indicated diverse utilization of modeling techniques. CONCLUSIONS The characteristics, data sources, development and modeling techniques implemented in the design of recent SDSS that target zoonotic disease outbreak were described. There are still many challenges to address during the design process to effectively utilize the value of emerging data sources and modeling methods. In the future, development should adhere to comparable standards for functionality and system development such as user input for system requirements, and flexible interfaces to visualize data that exist on different scales. PROSPERO registration number: CRD42018110466.
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Affiliation(s)
- Rachel Beard
- College of Health Solutions, Arizona State University, Phoenix, AZ USA
- Center for Environmental Health Engineering, Biodesign Institute, Arizona State University, Tempe, AZ USA
| | - Elizabeth Wentz
- School of Geographical Sciences and Urban Planning, Arizona State University, Tempe, AZ USA
| | - Matthew Scotch
- College of Health Solutions, Arizona State University, Phoenix, AZ USA
- Center for Environmental Health Engineering, Biodesign Institute, Arizona State University, Tempe, AZ USA
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Ben Ramadan AA, Jackson-Thompson J, Schmaltz CL. Improving Visualization of Female Breast Cancer Survival Estimates: Analysis Using Interactive Mapping Reports. JMIR Public Health Surveill 2018; 4:e42. [PMID: 29724710 PMCID: PMC5958288 DOI: 10.2196/publichealth.8163] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Revised: 08/22/2017] [Accepted: 01/17/2018] [Indexed: 11/13/2022] Open
Abstract
Background The Missouri Cancer Registry collects population-based cancer incidence data on Missouri residents diagnosed with reportable malignant neoplasms. The Missouri Cancer Registry wanted to produce data that would be of interest to lawmakers as well as public health officials at the legislative district level on breast cancer, the most common non-skin cancer among females. Objective The aim was to measure and interactively visualize survival data of female breast cancer cases in the Missouri Cancer Registry. Methods Female breast cancer data were linked to Missouri death records and the Social Security Death Index. Unlinked female breast cancer cases were crossmatched to the National Death Index. Female breast cancer cases in subcounty senate districts were geocoded using TIGER/Line shapefiles to identify their district. A database was created and analyzed in SEER*Stat. Senatorial district maps were created using US Census Bureau’s cartographic boundary files. The results were loaded with the cartographic data into InstantAtlas software to produce interactive mapping reports. Results Female breast cancer survival profiles of 5-year cause-specific survival percentages and 95% confidence intervals, displayed in tables and interactive maps, were created for all 34 senatorial districts. The maps visualized survival data by age, race, stage, and grade at diagnosis for the period from 2004 through 2010. Conclusions Linking cancer registry data to the National Death Index database improved accuracy of female breast cancer survival data in Missouri and this could positively impact cancer research and policy. The created survival mapping report could be very informative and usable by public health professionals, policy makers, at-risk women, and the public.
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Affiliation(s)
- Awatef Ahmed Ben Ramadan
- Missouri Cancer Registry and Research Center, University of Missouri-Columbia, Columbia, MO, United States.,Department of Mathematics, Science and Informatics, Penfield College, Mercer University, Atlanta, GA, United States.,Department of Health Management and Informatics, School of Medicine, University of Missouri-Columbia, Columbia, MO, United States.,MU Informatics Institute, University of Missouri-Columbia, Columbia, MO, United States
| | - Jeannette Jackson-Thompson
- Missouri Cancer Registry and Research Center, University of Missouri-Columbia, Columbia, MO, United States.,Department of Health Management and Informatics, School of Medicine, University of Missouri-Columbia, Columbia, MO, United States.,MU Informatics Institute, University of Missouri-Columbia, Columbia, MO, United States
| | - Chester Lee Schmaltz
- Missouri Cancer Registry and Research Center, University of Missouri-Columbia, Columbia, MO, United States.,Department of Health Management and Informatics, School of Medicine, University of Missouri-Columbia, Columbia, MO, United States
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Ben Ramadan AA, Jackson-Thompson J, Schmaltz CL. Estimated and Interactively Visualized Female Breast Cancer Incidence Rates in Missouri Senate Districts: 2008-2012. Online J Public Health Inform 2017; 9:e197. [PMID: 29403576 PMCID: PMC5790430 DOI: 10.5210/ojphi.v9i3.8084] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
OBJECTIVES To measure and interactively visualize female breast cancer (FBC) incidence rates in Missouri by age, race, stage and grade, and senate district of residence at diagnosis from 2008 to 2012. METHODS An observational epidemiological study. The FBC cases in counties split by senate districts were geocoded. Population database was created. A database was created within SEER*Stat. The incidence rates and the 95% Confidence Interval (CI) were age standardized using US 2000 Standard Population. The Census Bureau's Cartographic Boundary Files were used to create maps showing Missouri senate districts. Incidence results were loaded along with the maps into InstantAtlas™ software to produce interactive reports. RESULTS Cancer profiles were created for all 34 Missouri senate districts. An area profile and a double map that included interactive maps, graphs, and tables for the 34 Missouri senate districts were built. CONCLUSION The results may provide an estimation of social inequality within the state and could provide clues about the impact of level of coverage and accessibility to screening and health care services on disease prevention and early diagnosis.
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Affiliation(s)
- Awatef Ahmed Ben Ramadan
- Missouri Cancer Registry and Research Center,
University of
Missouri-Columbia
- School of Medicine Department of Health Management
and Informatics, University of
Missouri-Columbia
- MU Informatics Institute, University of
Missouri-Columbia
| | - Jeannette Jackson-Thompson
- Missouri Cancer Registry and Research Center,
University of
Missouri-Columbia
- School of Medicine Department of Health Management
and Informatics, University of
Missouri-Columbia
- MU Informatics Institute, University of
Missouri-Columbia
| | - Chester Lee Schmaltz
- Missouri Cancer Registry and Research Center,
University of
Missouri-Columbia
- School of Medicine Department of Health Management
and Informatics, University of
Missouri-Columbia
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Identifying weaknesses in national health emergency response skills and techniques with emergency responders: A cross-sectional study from China. Am J Infect Control 2017; 45:e1-e6. [PMID: 27814923 PMCID: PMC7115265 DOI: 10.1016/j.ajic.2016.10.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2016] [Revised: 10/02/2016] [Accepted: 10/03/2016] [Indexed: 11/24/2022]
Abstract
BACKGROUND To identify the weakest skill areas perceived by participants among key skills highly demanded during emergencies and to explore factors influencing the self-rated overall skill proficiency of public health emergency responders. METHODS The participants were selected by a multistage, stratified cluster sampling method in Heilongjiang CDC to complete questionnaires that assessed their perceptions of health emergency response skills and techniques. A final sample of 1,740 staff members was obtained and analyzed. RESULTS The 5 top skill deficiency areas perceived by participants were field epidemiologic investigation, personal protection, effective nuclear and radioactive response as well as psychological interventio (for these two areas gain the equal score), and risk assessment. The logistic regression revealed personal protective skills as the most important factor contributing to the self-rated overall skill proficiency of public health emergency responders, followed by field epidemiologic investigation skills. CONCLUSIONS More attention should be given to emergency response skill training and education programs. Major obstacles hindering the promotion of key skills and techniques among front-line emergency responders should be addressed urgently. Continuous efforts should be made to remove the financial, technical, and resource obstacles to improve public health emergency response capacity.
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Mwangungulu SP, Sumaye RD, Limwagu AJ, Siria DJ, Kaindoa EW, Okumu FO. Crowdsourcing Vector Surveillance: Using Community Knowledge and Experiences to Predict Densities and Distribution of Outdoor-Biting Mosquitoes in Rural Tanzania. PLoS One 2016; 11:e0156388. [PMID: 27253869 PMCID: PMC4890851 DOI: 10.1371/journal.pone.0156388] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2015] [Accepted: 05/15/2016] [Indexed: 01/12/2023] Open
Abstract
Lack of reliable techniques for large-scale monitoring of disease-transmitting mosquitoes is a major public health challenge, especially where advanced geo-information systems are not regularly applicable. We tested an innovative crowd-sourcing approach, which relies simply on knowledge and experiences of residents to rapidly predict areas where disease-transmitting mosquitoes are most abundant. Guided by community-based resource persons, we mapped boundaries and major physical features in three rural Tanzanian villages. We then selected 60 community members, taught them basic map-reading skills, and offered them gridded maps of their own villages (grid size: 200m×200m) so they could identify locations where they believed mosquitoes were most abundant, by ranking the grids from one (highest density) to five (lowest density). The ranks were interpolated in ArcGIS-10 (ESRI-USA) using inverse distance weighting (IDW) method, and re-classified to depict areas people believed had high, medium and low mosquito densities. Finally, we used odor-baited mosquito traps to compare and verify actual outdoor mosquito densities in the same areas. We repeated this process for 12 months, each time with a different group of 60 residents. All entomological surveys depicted similar geographical stratification of mosquito densities in areas classified by community members as having high, medium and low vector abundance. These similarities were observed when all mosquito species were combined, and also when only malaria vectors were considered. Of the 12,412 mosquitoes caught, 60.9% (7,555) were from areas considered by community members as having high mosquito densities, 28% (3,470) from medium density areas, and 11.2% (1,387) from low density areas. This study provides evidence that we can rely on community knowledge and experiences to identify areas where mosquitoes are most abundant or least abundant, even without entomological surveys. This crowd-sourcing method could be further refined and validated to improve community-based planning of mosquito control operations at low-cost.
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Affiliation(s)
- Stephen Peter Mwangungulu
- Environmental Health and Ecological Sciences Thematic Group, Ifakara Health Institute, Ifakara, Tanzania
- School of Geospatial Science and Technology, Ardhi University, Dar es Salaam, Tanzania
| | - Robert David Sumaye
- Environmental Health and Ecological Sciences Thematic Group, Ifakara Health Institute, Ifakara, Tanzania
- Institute of Tropical Medicine, Antwerp, Belgium
| | - Alex Julius Limwagu
- Environmental Health and Ecological Sciences Thematic Group, Ifakara Health Institute, Ifakara, Tanzania
| | - Doreen Josen Siria
- Environmental Health and Ecological Sciences Thematic Group, Ifakara Health Institute, Ifakara, Tanzania
| | - Emmanuel Wilson Kaindoa
- Environmental Health and Ecological Sciences Thematic Group, Ifakara Health Institute, Ifakara, Tanzania
- School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Parktown, South Africa
| | - Fredros Oketch Okumu
- Environmental Health and Ecological Sciences Thematic Group, Ifakara Health Institute, Ifakara, Tanzania
- School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Parktown, South Africa
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Jardine A, Mullan N, Gudes O, Cosford J, Moncrieff S, West G, Xiao J, Yun G, Someford P. Web-based geo-visualisation of spatial information to support evidence-based health policy: a case study of the development process of HealthTracks. Health Inf Manag 2015; 43:7-16. [PMID: 24948661 DOI: 10.1177/183335831404300202] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Place is of critical importance to health as it can reveal patterns of disease spread and clustering, associations with risk factors, and areas with greatest need for, or least access to healthcare services and promotion activities. Furthermore, in order to get a good understanding of the health status and needs of a particular area a broad range of data are required which can often be difficult and time consuming to obtain and collate. This process has been expedited by bringing together multiple data sources and making them available in an online geo-visualisation, HealthTracks, which consists of a mapping and reporting component. The overall aim of the HealthTracks project is to make spatial health information more accessible to policymakers, analysts, planners and program managers to inform decision-making across the Department of Health Western Australia. Preliminary mapping and reporting applications that have been utilised to inform service planning, increased awareness of the utility of spatial information and improved efficiency in data access were developed. The future for HealthTracks involves expanding the range of data available and developing new analytical capabilities in order to work towards providing external agencies, researchers and eventually the general public access to rich local area spatial data.
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Affiliation(s)
| | | | - Ori Gudes
- Curtin University, Perth, WA, Australia
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Revere D, Dixon BE, Hills R, Williams JL, Grannis SJ. Leveraging health information exchange to improve population health reporting processes: lessons in using a collaborative-participatory design process. ACTA ACUST UNITED AC 2014; 2:1082. [PMID: 25848615 PMCID: PMC4371487 DOI: 10.13063/2327-9214.1082] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Introduction: Surveillance, or the systematic monitoring of disease within a population, is a cornerstone function of public health. Despite significant investment in information technologies (IT) to improve the public’s health, health care providers continue to rely on manual, spontaneous reporting processes that can result in incomplete and delayed surveillance activities. Background: Participatory design principles advocate including real users and stakeholders when designing an information system to ensure high ecological validity of the product, incorporate relevance and context into the design, reduce misconceptions designers can make due to insufficient domain expertise, and ultimately reduce barriers to adoption of the system. This paper focuses on the collaborative and informal participatory design process used to develop enhanced, IT-enabled reporting processes that leverage available electronic health records in a health information exchange to prepopulate notifiable-conditions report forms used by public health authorities. Methods: Over nine months, public health stakeholders, technical staff, and informatics researchers were engaged in a multiphase participatory design process that included public health stakeholder focus groups, investigator-engineering team meetings, public health survey and census regarding high-priority data elements, and codesign of exploratory prototypes and final form mock-ups. Findings: A number of state-mandated report fields that are not highly used or desirable for disease investigation were eliminated, which allowed engineers to repurpose form space for desired and high-priority data elements and improve the usability of the forms. Our participatory design process ensured that IT development was driven by end user expertise and needs, resulting in significant improvements to the layout and functionality of the reporting forms. Discussion: In addition to informing report form development, engaging with public health end users and stakeholders through the participatory design process provided new insights into public health workflow and allowed the team to quickly triage user requests while managing user expectations within the realm of engineering possibilities. Conclusion: Engaging public health, engineering staff, and investigators in a shared codesigning process ensured that the new forms will not only meet real-life needs but will also support development of a product that will be adopted and, ultimately, improve communicable and infectious disease reporting by clinicians to public health.
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Carroll LN, Au AP, Detwiler LT, Fu TC, Painter IS, Abernethy NF. Visualization and analytics tools for infectious disease epidemiology: a systematic review. J Biomed Inform 2014; 51:287-98. [PMID: 24747356 PMCID: PMC5734643 DOI: 10.1016/j.jbi.2014.04.006] [Citation(s) in RCA: 102] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2013] [Revised: 03/13/2014] [Accepted: 04/03/2014] [Indexed: 12/31/2022]
Abstract
BACKGROUND A myriad of new tools and algorithms have been developed to help public health professionals analyze and visualize the complex data used in infectious disease control. To better understand approaches to meet these users' information needs, we conducted a systematic literature review focused on the landscape of infectious disease visualization tools for public health professionals, with a special emphasis on geographic information systems (GIS), molecular epidemiology, and social network analysis. The objectives of this review are to: (1) identify public health user needs and preferences for infectious disease information visualization tools; (2) identify existing infectious disease information visualization tools and characterize their architecture and features; (3) identify commonalities among approaches applied to different data types; and (4) describe tool usability evaluation efforts and barriers to the adoption of such tools. METHODS We identified articles published in English from January 1, 1980 to June 30, 2013 from five bibliographic databases. Articles with a primary focus on infectious disease visualization tools, needs of public health users, or usability of information visualizations were included in the review. RESULTS A total of 88 articles met our inclusion criteria. Users were found to have diverse needs, preferences and uses for infectious disease visualization tools, and the existing tools are correspondingly diverse. The architecture of the tools was inconsistently described, and few tools in the review discussed the incorporation of usability studies or plans for dissemination. Many studies identified concerns regarding data sharing, confidentiality and quality. Existing tools offer a range of features and functions that allow users to explore, analyze, and visualize their data, but the tools are often for siloed applications. Commonly cited barriers to widespread adoption included lack of organizational support, access issues, and misconceptions about tool use. DISCUSSION AND CONCLUSION As the volume and complexity of infectious disease data increases, public health professionals must synthesize highly disparate data to facilitate communication with the public and inform decisions regarding measures to protect the public's health. Our review identified several themes: consideration of users' needs, preferences, and computer literacy; integration of tools into routine workflow; complications associated with understanding and use of visualizations; and the role of user trust and organizational support in the adoption of these tools. Interoperability also emerged as a prominent theme, highlighting challenges associated with the increasingly collaborative and interdisciplinary nature of infectious disease control and prevention. Future work should address methods for representing uncertainty and missing data to avoid misleading users as well as strategies to minimize cognitive overload.
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Affiliation(s)
- Lauren N Carroll
- Department of Biomedical Informatics and Medical Education, University of Washington, 850 Republican St., Box 358047, Seattle, WA 98109, United States.
| | - Alan P Au
- Department of Biomedical Informatics and Medical Education, University of Washington, 850 Republican St., Box 358047, Seattle, WA 98109, United States.
| | - Landon Todd Detwiler
- Department of Biological Structure, University of Washington, 1959 NE Pacific St., Box 357420, United States.
| | - Tsung-Chieh Fu
- Department of Epidemiology, University of Washington, 1959 NE Pacific St., Box 357236, Seattle, WA 98195, United States.
| | - Ian S Painter
- Department of Health Services, University of Washington, 1959 NE Pacific St., Box 359442, Seattle, WA 98195, United States.
| | - Neil F Abernethy
- Department of Biomedical Informatics and Medical Education, University of Washington, 850 Republican St., Box 358047, Seattle, WA 98109, United States; Department of Health Services, University of Washington, 1959 NE Pacific St., Box 359442, Seattle, WA 98195, United States.
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Guidelines for the mapping of cancer registry data: results from a breast cancer expert panel study. JOURNAL OF PUBLIC HEALTH MANAGEMENT AND PRACTICE 2013; 19:E1-E10. [PMID: 23364274 DOI: 10.1097/phh.0b013e318268aef1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
CONTEXT Small area (eg, subcounty) cancer mapping is one of the analytic services most commonly requested of cancer registries and local public health agencies, and difficulties in providing it have been noted to undermine public confidence. Although a great many statistical protocols have been published to enable this practice, none of them are in common use to generate information for the general public. OBJECTIVES To evaluate the utility of subcounty breast cancer mapping and articulate guidelines and a possible protocol for its implementation by cancer registries and local public health agencies. METHODS We convened an Expert Advisory Group of breast cancer stakeholders from around California to elicit values, priorities, and preferred characteristics of protocols for proactive subcounty breast cancer mapping. Upon formulating a protocol, we applied it to 9 years of data (2000-2008) describing invasive breast cancer in California for evaluation by the Expert Advisory Group. RESULTS Maps with subcounty resolution were seen to provide important information with a wide range of applications. Priorities included the avoidance of false-positive findings, scientific credibility, and the provision of information elucidating social and environmental characteristics. A protocol using Kulldorff's Scan Statistic along with postanalytic steps for refining results was elaborated; when applied to the data, 4 discrete regions with elevated rates of invasive breast cancer were identified and described. CONCLUSIONS Expert Advisory Group priorities were readily translatable into a scientifically rigorous protocol that protected confidentiality and avoided statistically unstable rate estimates. The resulting maps enabled participants to visualize geographically defined populations falling within and crossing county boundaries. These findings support the enactment of policies for the routine and proactive analysis of breast cancer surveillance data to provide subcounty information.
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Connors JP, Lei S, Kelly M. Citizen Science in the Age of Neogeography: Utilizing Volunteered Geographic Information for Environmental Monitoring. ACTA ACUST UNITED AC 2012. [DOI: 10.1080/00045608.2011.627058] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Mitchell S, Cockcroft A, Andersson N. Population weighted raster maps can communicate findings of social audits: examples from three continents. BMC Health Serv Res 2011; 11 Suppl 2:S14. [PMID: 22376316 PMCID: PMC3332558 DOI: 10.1186/1472-6963-11-s2-s14] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
Abstract
Background Maps can portray trends, patterns, and spatial differences that might be overlooked in tabular data and are now widely used in health research. Little has been reported about the process of using maps to communicate epidemiological findings. Method Population weighted raster maps show colour changes over the study area. Similar to the rasters of barometric pressure in a weather map, data are the health occurrence – a peak on the map represents a higher value of the indicator in question. The population relevance of each sentinel site, as determined in the stratified last stage random sample, combines with geography (inverse-distance weighting) to provide a population-weighted extension of each colour. This transforms the map to show population space rather than simply geographic space. Results Maps allowed discussion of strategies to reduce violence against women in a context of political sensitivity about quoting summary indicator figures. Time-series maps showed planners how experiences of health services had deteriorated despite a reform programme; where in a country HIV risk behaviours were improving; and how knowledge of an economic development programme quickly fell off across a region. Change maps highlighted where indicators were improving and where they were deteriorating. Maps of potential impact of interventions, based on multivariate modelling, displayed how partial and full implementation of programmes could improve outcomes across a country. Scale depends on context. To support local planning, district maps or local government authority maps of health indicators were more useful than national maps; but multinational maps of outcomes were more useful for regional institutions. Mapping was useful to illustrate in which districts enrolment in religious schools – a rare occurrence - was more prevalent. Conclusions Population weighted raster maps can present social audit findings in an accessible and compelling way, increasing the use of evidence by planners with limited numeracy skills or little time to look at evidence. Maps complement epidemiological analysis, but they are not a substitute. Much less do they substitute for rigorous epidemiological designs, like randomised controlled trials.
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Campos JADB, Melanda EA, Antunes JDS, Foschini ALR. Dental caries and the nutritional status of preschool children: a spatial analysis. CIENCIA & SAUDE COLETIVA 2011; 16:4161-8. [DOI: 10.1590/s1413-81232011001100021] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2009] [Accepted: 10/30/2010] [Indexed: 11/22/2022] Open
Abstract
OBJECTIVE: This cross-sectional study sought to conduct a spatially analysis of the distribution of dental caries and the nutritional status (NS) of 5-year-old preschool children of public schools in the city of Araraquara, São Paulo, Brazil. METHODS: The sample was selected in a stratified probabilistic manner. A dental examination was conducted to investigate the dmft index. The anthropometric indicators of the weight/height (W/H), height/age (H/A), weight/age (W/A) and body mass index (BMI) were calculated to estimate the NS. A descriptive statistical analysis was conducted and a thematic map was created. At the end of the study 491 children had full address codification. A GPS device was used to ascertain the geographic reference points. A pluri-directional semi-variogram was elaborated. RESULTS: It was revealed that both variables presented a pure nugget effect showing the absence of a spatial correlation, in other words the dmft and nutritional status are not regionalized variables, and their values do not reveal direct spatial dependence. CONCLUSIONS: Dental caries and nutritional status are health conditions that do not reveal spatial dependence. Ultimately, the combination of these indicators with others can produce spatial dependence effects.
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Interactive map communication: Pilot study of the visual perceptions and preferences of public health practitioners. Public Health 2011; 125:554-60. [DOI: 10.1016/j.puhe.2011.02.011] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2010] [Revised: 07/29/2010] [Accepted: 02/22/2011] [Indexed: 11/22/2022]
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The development of a graphical user interface, functional elements and classifiers for the non-invasive characterization of childhood brain tumours using magnetic resonance spectroscopy. KNOWL ENG REV 2011. [DOI: 10.1017/s0269888911000154] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
AbstractMagnetic resonance spectroscopy (MRS) is a non-invasive method, which can provide diagnostic information on children with brain tumours. The technique has not been widely used in clinical practice, partly because of the difficulty of developing robust classifiers from small patient numbers and the challenge of providing decision support systems (DSSs) acceptable to clinicians. This paper describes a participatory design approach in the development of an interactive clinical user interface, as part of a distributed DSS for the diagnosis and prognosis of brain tumours. In particular, we consider the clinical need and context of developing interactive elements for an interface that facilitates the classification of childhood brain tumours, for diagnostic purposes, as part of the HealthAgents European Union project. Previous MRS-based DSS tools have required little input from the clinician user and a raw spectrum is essentially processed to provide a diagnosis sometimes with an estimate of error. In childhood brain tumour diagnosis where there are small numbers of cases and a large number of potential diagnoses, this approach becomes intractable. The involvement of clinicians directly in the designing of the DSS for brain tumour diagnosis from MRS led to an alternative approach with the creation of a flexible DSS that, allows the clinician to input prior information to create the most relevant differential diagnosis for the DSS. This approach mirrors that which is currently taken by clinicians and removes many sources of potential error. The validity of this strategy was confirmed for a small cohort of children with cerebellar tumours by combining two diagnostic types, pilocytic astrocytomas (11 cases) and ependymomas (four cases) into a class of glial tumours which then had similar numbers to the other diagnostic type, medulloblastomas (18 cases). Principal component analysis followed by linear discriminant analysis on magnetic resonance spectral data gave a classification accuracy of 91% for a three-class classifier and 94% for a two-class classifier using a leave-one-out analysis. This DSS provides a flexible method for the clinician to use MRS for brain tumour diagnosis in children.
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Hasvold PE, Scholl J. Flexibility in interaction: sociotechnical design of an operating room scheduler. Int J Med Inform 2011; 80:631-45. [PMID: 21782503 DOI: 10.1016/j.ijmedinf.2011.06.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2010] [Revised: 06/20/2011] [Accepted: 06/22/2011] [Indexed: 11/28/2022]
Abstract
PURPOSE The purpose of this study was to learn about factors that influence the design and implementation of situated computing solutions that support hospital work. This includes social and technical aspects of the actual systems that will be implemented, as well as the appropriate design methodology for developing these systems. METHODS Staff at a surgical department at a University hospital were engaged in a participatory design (PD) process to help solve a problem that was presented by the staff: scheduling of patients and surgery rooms, and creating awareness of the status of ongoing surgeries. The PD process was conceptually aided by a model that describes Medical Informatics Systems as comprising of three components, a service component, a technical component and a social component. The process included the use of ethnographic field work and iterative redesign of both technical and social components of the system after it had been implemented into day-to-day work practice. RESULTS The PD process resulted in the creation of a system that was iteratively created over a period of about 2 years, and which then handed over to the IT department of the hospital and used by the surgical department for a period of about 1 additional year. The first version of the prototype that was implemented contained usability flaws that made the system difficult to use in time critical situations. As a result of observations and a redesign of the technical component and social component of the system a new version was possible to implement that managed to overcome this problem. A key feature of this second version of the system was that some responsibility for data entry validation was shifted from the technical component of the system to the social component of the system. This was done by allowing users to input poor data initially, while requiring them to fix this data later on. This solution breaks from "traditional" usability design but proved to be quite successful in this case. A challenge with the solution, however, was that the IT department could not understand the concept of systems being described as comprising of both social components and technical components, and thus they had difficulty in understanding the overall design of the system during the handover process. CONCLUSIONS Situated computing can present a number of design challenges that may not be easy for designers and hospital workers to understand before a system has been implemented. Situated computing development may thus need to be aided by PD that includes both ethnographic observations and iterative redesign of the system after it has been implemented. Traditional data validation mechanisms may create poor system performance in cases where users are rushed to input data into the computer due to pressures created by other more critical work activities. In this case it may be better to rely on social mechanisms for correcting errors later on, rather than error catching mechanisms that reject incorrect data. It can be challenging, however, to maintain such systems over time, as IT-departments may lack skills and interest in social components.
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Affiliation(s)
- Per Erlend Hasvold
- Norwegian Centre for Integrated Care and Telemedicine at the University Hospital of North Norway, Norway.
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Sutcliffe A, Thew S, De Bruijn O, Buchan I, Jarvis P, McNaught J, Procter R. User engagement by user-centred design in e-Health. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2010; 368:4209-4224. [PMID: 20679132 DOI: 10.1098/rsta.2010.0141] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
This paper describes the application of user-centred design (UCD) methods and a user engagement (UE) approach to a case study development of a visualization tool (ADVISES) to support epidemiological research. The combined UCD/UE approach consisted of scenario-based design, and analysis of the users' tasks and mental model of the domain. Prototyping and storyboarding techniques were used to explore design options with users as well as specifying functionality for two versions of the software to meet the needs of novice and expert users. An evaluation of the prototype was carried out to assess the extent to which the expert model would support public health professionals in their analysis activities. The results of the design exploration requirements analysis study are reported. The implications of scenario-based design exploration, participatory design and user engagement are discussed.
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Affiliation(s)
- Alistair Sutcliffe
- Manchester Business School, University of Manchester, Booth Street East, Manchester M15 6PB, UK.
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Jiang Z, Wang D, Yang S, Duan M, Bu P, Green A, Zhang X. Integrated response toward HIV: a health promotion case study from China. Health Promot Int 2010; 26:196-211. [DOI: 10.1093/heapro/daq044] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Hudson DL, Cohen ME. Temporal trend analysis in personal health records. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2009; 2008:3811-4. [PMID: 19163542 DOI: 10.1109/iembs.2008.4650039] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The creation of a universal standard for electronic medical records (EMR) remains a work in progress. The existence of a standard EMR that can be accessed by medical professionals anywhere in the world as well as by the patient will have a significant impact on the way that medicine is practiced. In addition to having information readily available, it would present the possibility to do individual trend analysis on each patient based on information accumulated over a lifetime. This information would permit diagnosis based on the individual rather than solely on population statistics. A comprehensive system for performing trend analysis on the multitude of data types relevant to medical decision making requires the creation and integration of a number of methods. A general approach based on a hybrid combination of automated decision support methods is described and illustrated for using trend data applied to cardiac diagnosis. The methods are general and can be applied to any application area.
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Affiliation(s)
- Donna L Hudson
- Family and Community Medicine, University of California-San Francisco, CA, USA
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An Assessment of the Walkability of Two School Neighborhoods in Greenville, North Carolina. JOURNAL OF PUBLIC HEALTH MANAGEMENT AND PRACTICE 2008; 14:e1-8. [DOI: 10.1097/01.phh.0000316494.93529.e0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Kothari A, Driedger SM, Bickford J, Morrison J, Sawada M, Graham ID, Crighton E. Mapping as a knowledge translation tool for Ontario Early Years Centres: views from data analysts and managers. Implement Sci 2008; 3:4. [PMID: 18205913 PMCID: PMC2265301 DOI: 10.1186/1748-5908-3-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2007] [Accepted: 01/18/2008] [Indexed: 11/23/2022] Open
Abstract
Background Local Ontario Early Years Centres (OEYCs) collect timely and relevant local data, but knowledge translation is needed for the data to be useful. Maps represent an ideal tool to interpret local data. While geographic information system (GIS) technology is available, it is less clear what users require from this technology for evidence-informed program planning. We highlight initial challenges and opportunities encountered in implementing a mapping innovation (software and managerial decision-support) as a knowledge translation strategy. Methods Using focus groups, individual interviews and interactive software development events, we taped and transcribed verbatim our interactions with nine OEYCs in Ontario, Canada. Research participants were composed of data analysts and their managers. Deductive analysis of the data was based on the Ottawa Model of Research Use, focusing on the innovation (the mapping tool and maps), the potential adopters, and the environment. Results Challenges associated with the innovation included preconceived perceptions of a steep learning curve with GIS software. Challenges related to the potential adopters included conflicting ideas about tool integration into the organization and difficulty with map interpretation. Lack of funds, lack of availability of accurate data, and unrealistic reporting requirements represent environmental challenges. Conclusion Despite the clear need for mapping software and maps, there remain several challenges to their effective implementation. Some can be modified, while other challenges might require attention at the systemic level. Future research is needed to identify barriers and facilitators related to using mapping software and maps for decision-making by other users, and to subsequently develop mapping best practices guidelines to assist community-based agencies in circumventing some challenges, and support information equity across a region.
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Affiliation(s)
- Anita Kothari
- Faculty of Health Sciences, University of Western Ontario, Arthur & Sonia Labatt Health Sciences Building, Room 222, N6A 5B9, London, Ontario, Canada.
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