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Yang Z, He Y, Li S, Meng J, Li N, Wang J. Isolation and Genomic Characterization of Kadipiro Virus from Mosquitoes in Yunnan, China. Vector Borne Zoonotic Dis 2024. [PMID: 38683642 DOI: 10.1089/vbz.2023.0157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/01/2024] Open
Abstract
Background: Kadipiro virus (KDV) is a species of the new 12 segmented RNA virus grouped under the genus Seadornavirus within the Reoviridae family. It has previously been isolated or detected from mosquito, Odonata, and bat feces in Indonesia, China, and Denmark, respectively. Here, we describe the isolation and characterization of a viral strain from mosquitoes in Yunnan Province, China. Methods: Mosquitoes were collected overnight using light traps in Shizong county, on July 17, 2023. Virus was isolated from the mosquito homogenate and grown using baby hamster kidney and Aedes albopictus (C6/36) cells. Preliminary identification of the virus was performed by agarose gel electrophoresis (AGE). The full-genome sequences of the strain were determined by full-length amplification of cDNAs and sequenced using next-generation sequencing. Results: We isolated a viral strain (SZ_M48) from mosquitoes (Culex tritaeniorhynchus Giles) that caused cytopathogenic effects in C6/36 cells. AGE analysis indicated a genome consisting of 12 segments of double-stranded RNA that demonstrated a "6-5-1" pattern, similar to the migrating bands of KDV. Phylogenetic analysis based on the full-genome sequence revealed that SZ_M48 is more clustered with KDV isolates from Hubei and Shangdong in China than with Indonesian and Danish strains. The identity between SZ_M48 and SDKL1625 (Shandong, China) is slightly lower than that of QTM27331 (Hubei, China), and the identity with JKT-7075 (Indonesia) and 21164-6/M.dau/DK (Denmark) is the lowest. Conclusion: The full-genome sequence of the new KDV strain described in this study may be useful for surveillance of the evolutionary characteristics of KDVs. Moreover, these findings extend the knowledge about the genomic diversity, potential vectors, and the distribution of KDVs in China.
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Affiliation(s)
- Zhenxing Yang
- Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Key Laboratory of Transboundary Animal Diseases Prevention and Control (Coconstruction by Ministry and Province), Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan, China
| | - Yuwen He
- Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Key Laboratory of Transboundary Animal Diseases Prevention and Control (Coconstruction by Ministry and Province), Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan, China
| | - Susheng Li
- Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Key Laboratory of Transboundary Animal Diseases Prevention and Control (Coconstruction by Ministry and Province), Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan, China
| | - Jinxin Meng
- Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Key Laboratory of Transboundary Animal Diseases Prevention and Control (Coconstruction by Ministry and Province), Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan, China
| | - Nan Li
- Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Key Laboratory of Transboundary Animal Diseases Prevention and Control (Coconstruction by Ministry and Province), Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan, China
| | - Jinglin Wang
- Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Key Laboratory of Transboundary Animal Diseases Prevention and Control (Coconstruction by Ministry and Province), Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan, China
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Zhang J, Liu H, Wang J, Wang J, Zhang J, Wang J, Zhang X, Ji H, Ding Z, Xia H, Zhang C, Zhao Q, Liang G. Origin and evolution of emerging Liao ning Virus (genus Seadornavirus, family Reoviridae). Virol J 2020; 17:105. [PMID: 32664965 PMCID: PMC7359424 DOI: 10.1186/s12985-020-01382-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Accepted: 07/03/2020] [Indexed: 11/24/2022] Open
Abstract
Background Liao ning virus (LNV) is a member of the genus Seadornavirus, family Reoviridae and has been isolated from kinds of vectors in Asia and Australia. However, there are no systematic studies describe the molecular genetic evolution and migration of LNVs. With the development of bioinformatics, viral genetic data combining the information of virus isolation time and locations could be integrated to infer the virus evolution and spread in nature. Methods Here, a phylogenetic and phylogeographic analysis using Bayesian Markov chain Monte Carlo simulations was conducted on the LNVs isolated from a variety of vectors during 1990–2014 to identify the evolution and migration patterns of LNVs. Results The results demonstrated that the LNV could be divided into 3 genotypes, of which genotype 1 mainly composed of LNVs isolated from Australia during 1990 to 2014 and the original LNV strain (LNV-NE97–31) isolated from Liaoning province in northern China in 1997, genotype 2 comprised of the isolates all from Xinjiang province in western China and genotype 3 consisted the isolates from Qinghai and Shanxi province of central China. LNVs emerged about 272 years ago and gradually evolved into three lineages in the order genotype 1, genotype 2 and genotype 3. Following phylogeographic analysis, it shows genotype 1 LNVs transmitted from Australia (113°E-153°E,10°S-42°S) to Liaoning province (118°E-125°E,38°N-43°N) in Northeast Asian continent then further spread across the central part of China to western China (75°E-95°E,35°N-50°N). Conclusion LNVs were initially isolated from Liaoning province of China in the Northeast Asia, however, the present study revealed that LNVs were first appeared in Australia in the South Pacific region and transmitted to mainland China then rapidly spread across China and evolved three different genotypes. The above results suggested that LNV had the characteristics of long-distance transmission and there were great genetic diversity existed in the LNV population. Notably, current information of 80 strains of LNVs are limited. It is of great importance to strengthen the surveillance of LNVs to explore its real origin in nature and monitoring of the LNVs’ population variation and maintain vigilance to avoid LNV breaking through the species barrier and further clarify its relationship to human and animal infection.
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Affiliation(s)
- Jun Zhang
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China
| | - Hong Liu
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China.
| | - Jiahui Wang
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China
| | - Jiheng Wang
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China
| | - Jianming Zhang
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China
| | - Jiayue Wang
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China
| | - Xin Zhang
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China
| | - Hongfang Ji
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China
| | - Zhongfeng Ding
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China
| | - Han Xia
- Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, Hubei, China
| | - Chunyang Zhang
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China
| | - Qian Zhao
- Shandong Provincial Research Center for Bioinformatic Engineering and Technique, School of Life Sciences, Shandong University of Technology, Zibo, 255049, People's Republic of China
| | - Guodong Liang
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, People's Republic of China.
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3
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Alonso P, Gladieux P, Moubset O, Shih PJ, Mournet P, Frouin J, Blondin L, Ferdinand R, Fernandez E, Julian C, Filloux D, Adreit H, Fournier E, Ducasse A, Grosbois V, Morel JB, Huang H, Jin B, He X, Martin DP, Vernière C, Roumagnac P. Emergence of Southern Rice Black-Streaked Dwarf Virus in the Centuries-Old Chinese Yuanyang Agrosystem of Rice Landraces. Viruses 2019; 11:v11110985. [PMID: 31731529 PMCID: PMC6893465 DOI: 10.3390/v11110985] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Revised: 10/10/2019] [Accepted: 10/15/2019] [Indexed: 01/17/2023] Open
Abstract
Southern rice black-streaked dwarf virus (SRBSDV), which causes severe disease symptoms in rice (Oriza sativa L.) has been emerging in the last decade throughout northern Vietnam, southern Japan and southern, central and eastern China. Here we attempt to quantify the prevalence of SRBSDV in the Honghe Hani rice terraces system (HHRTS)-a Chinese 1300-year-old traditional rice production system. We first confirm that genetically diverse rice varieties are still being cultivated in the HHRTS and categorize these varieties into three main genetic clusters, including the modern hybrid varieties group (MH), the Hongyang improved modern variety group (HY) and the traditional indica landraces group (TIL). We also show over a 2-year period that SRBSDV remains prevalent in the HHRTS (20.1% prevalence) and that both the TIL (17.9% prevalence) and the MH varieties (5.1% prevalence) were less affected by SRBSDV than were the HY varieties (30.2% prevalence). Collectively we suggest that SRBSDV isolates are freely moving within the HHRTS and that TIL, HY and MH rice genetic clusters are not being preferentially infected by particular SRBSDV lineages. Given that SRBSDV can cause 30-50% rice yield losses, our study emphasizes both the need to better monitor the disease in the HHRTS, and the need to start considering ways to reduce its burden on rice production.
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Affiliation(s)
- Pascal Alonso
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
| | - Pierre Gladieux
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
- INRA, BGPI, 34398 Montpellier, France
| | - Oumaima Moubset
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
| | - Pei-Jung Shih
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
- Department of Plant Pathology, National Chung Hsing University, Taichung 402, Taiwan
| | - Pierre Mournet
- CIRAD, UMR AGAP, 34398 Montpellier, France; (P.M.); (J.F.)
- AGAP, Univ Montpellier, CIRAD, INRA, Montpellier SupAgro, 34398 Montpellier, France
| | - Julien Frouin
- CIRAD, UMR AGAP, 34398 Montpellier, France; (P.M.); (J.F.)
- AGAP, Univ Montpellier, CIRAD, INRA, Montpellier SupAgro, 34398 Montpellier, France
| | - Laurence Blondin
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
| | - Romain Ferdinand
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
| | - Emmanuel Fernandez
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
| | - Charlotte Julian
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
| | - Denis Filloux
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
| | - Henry Adreit
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
| | - Elisabeth Fournier
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
- INRA, BGPI, 34398 Montpellier, France
| | - Aurélie Ducasse
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
- INRA, BGPI, 34398 Montpellier, France
| | | | - Jean-Benoit Morel
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
- INRA, BGPI, 34398 Montpellier, France
| | - Huichuan Huang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming 650201, China; (H.H.); (X.H.)
| | - Baihui Jin
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming 650201, China; (H.H.); (X.H.)
| | - Xiahong He
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming 650201, China; (H.H.); (X.H.)
- Southwest Forestry University, Kunming 650224, China
| | - Darren P. Martin
- Computational Biology Group, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town 4579, South Africa;
| | - Christian Vernière
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
| | - Philippe Roumagnac
- CIRAD, BGPI, 34398 Montpellier, France; (P.A.); (O.M.); (P.-J.S.); (L.B.); (R.F.); (E.F.); (C.J.); (D.F.); (H.A.); (C.V.)
- BGPI, INRA, CIRAD, SupAgro, Univ Montpellier, 34398 Montpellier, France; (P.G.); (E.F.); (A.D.); (J.-B.M.)
- Correspondence: ; Tel.: +33(0)-4-99-62-48-53; Fax: +33(0)-4-99-62-48-48
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4
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Zhang W, Li F, Liu A, Lin X, Fu S, Song J, Liu G, Shao N, Tao Z, Wang Q, He Y, Lei W, Liang G, Xu A, Zhao L, Wang H. Identification and genetic analysis of Kadipiro virus isolated in Shandong province, China. Virol J 2018; 15:64. [PMID: 29625620 PMCID: PMC5889548 DOI: 10.1186/s12985-018-0966-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2017] [Accepted: 03/16/2018] [Indexed: 12/16/2022] Open
Abstract
Background Kadipiro virus (KDV) belongs to the Reoviridae family, which consists of segmented, non-enveloped, double-stranded RNA viruses. It has previously been isolated from Culex, Anopheles, Armigeres and Aedes mosquitoes in Indonesia and China. Here, we describe the isolation and characterization of SDKL1625 from Anopheles sinensis mosquitoes in Shandong province, China. Methods In this study, we isolated Kadipiro virus in Aedes albopictus C6/36 cell culture and the complete genome sequencing was made by next generation sequencing. Results We isolated and characterized a Kadipiro virus from Anopheles sinensis mosquitoes in 2016 in Shandong province, China. Nucleotide and amino acid homology analysis of SDKL1625 showed higher levels of sequence identity with QTM27331 (Odonata, China, 2016) than with JKT-7075 (Culex fuscocephalus, Indonesia, 1981). The SDKL1625 has 86–97% amino acid identity with the JKT-7075, 88–99% amino acid identity with the QTM27331. Among the 12 fragments, VP1, VP2, VP4, VP6, VP7, VP9 and VP12 showed high amino acid identity (> 90%) and VP5 showed the lowest identity (86% and 88%). Conclusions This is the first identification of KDV from mosquito in China. Virus morphology and genome organization were also determined, which will further enrich our understanding of the molecular biological characteristics of KDV and seadornaviruses.
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Affiliation(s)
- Weijia Zhang
- School of Public Health, Shandong University, Jinan, 250012, People's Republic of China.,State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China
| | - Fan Li
- State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.,Department of Viral Encephalitis, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, People's Republic of China
| | - Aiguo Liu
- Institute for Immunization Program, Center for Disease Control and Prevention of Dongying City, Dongying, 257091, People's Republic of China
| | - Xiaojuan Lin
- Institute for Immunization Program, Shandong Center for Disease Control and Prevention, Jinan, 250014, People's Republic of China
| | - Shihong Fu
- State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.,Department of Viral Encephalitis, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, People's Republic of China
| | - Jingdong Song
- State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.,Department of Academician Hong Tao, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 100052, People's Republic of China
| | - Guifang Liu
- Institute for Immunization Program, Shandong Center for Disease Control and Prevention, Jinan, 250014, People's Republic of China
| | - Nan Shao
- State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.,Department of Viral Encephalitis, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, People's Republic of China
| | - Zexin Tao
- Institute for Immunization Program, Shandong Center for Disease Control and Prevention, Jinan, 250014, People's Republic of China
| | - Qianying Wang
- State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.,Department of Viral Encephalitis, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, People's Republic of China
| | - Ying He
- State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.,Department of Viral Encephalitis, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, People's Republic of China
| | - Wenwen Lei
- State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.,Department of Viral Encephalitis, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, People's Republic of China
| | - Guodong Liang
- State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.,Department of Viral Encephalitis, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, People's Republic of China
| | - Aiqiang Xu
- Institute for Immunization Program, Shandong Center for Disease Control and Prevention, Jinan, 250014, People's Republic of China
| | - Li Zhao
- School of Public Health, Shandong University, Jinan, 250012, People's Republic of China.
| | - Huanyu Wang
- State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China. .,Department of Viral Encephalitis, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, People's Republic of China.
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5
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Prow NA, Mah MG, Deerain JM, Warrilow D, Colmant AMG, O'Brien CA, Harrison JJ, McLean BJ, Hewlett EK, Piyasena TBH, Hall-Mendelin S, van den Hurk AF, Watterson D, Huang B, Schulz BL, Webb CE, Johansen CA, Chow WK, Hobson-Peters J, Cazier C, Coffey LL, Faddy HM, Suhrbier A, Bielefeldt-Ohmann H, Hall RA. New genotypes of Liao ning virus (LNV) in Australia exhibit an insect-specific phenotype. J Gen Virol 2018. [PMID: 29533743 DOI: 10.1099/jgv.0.001038] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Liao ning virus (LNV) was first isolated in 1996 from mosquitoes in China, and has been shown to replicate in selected mammalian cell lines and to cause lethal haemorrhagic disease in experimentally infected mice. The first detection of LNV in Australia was by deep sequencing of mosquito homogenates. We subsequently isolated LNV from mosquitoes of four genera (Culex, Anopheles, Mansonia and Aedes) in New South Wales, Northern Territory, Queensland and Western Australia; the earliest of these Australian isolates were obtained from mosquitoes collected in 1988, predating the first Chinese isolates. Genetic analysis revealed that the Australian LNV isolates formed two new genotypes: one including isolates from eastern and northern Australia, and the second comprising isolates from the south-western corner of the continent. In contrast to findings reported for the Chinese LNV isolates, the Australian LNV isolates did not replicate in vertebrate cells in vitro or in vivo, or produce signs of disease in wild-type or immunodeficient mice. A panel of human and animal sera collected from regions where the virus was found in high prevalence also showed no evidence of LNV-specific antibodies. Furthermore, high rates of virus detection in progeny reared from infected adult female mosquitoes, coupled with visualization of the virus within the ovarian follicles by immunohistochemistry, suggest that LNV is transmitted transovarially. Thus, despite relatively minor genomic differences between Chinese and Australian LNV strains, the latter display a characteristic insect-specific phenotype.
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Affiliation(s)
- Natalie A Prow
- Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia.,QIMR Berghofer Medical Research Institute, Herston, Queensland, Australia.,School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia
| | - Marcus G Mah
- QIMR Berghofer Medical Research Institute, Herston, Queensland, Australia.,School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Present address: Duke-NUS Medical School, Programme in Emerging Infectious Diseases, 8 College Rd, 169857, Singapore
| | - Joshua M Deerain
- Present address: Department of Microbiology and Immunology, University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth Street, Melbourne, VIC 3000, Australia.,School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia
| | - David Warrilow
- Public Health Virology, Queensland Health Forensic and Scientific Services (QHFSS), Queensland, Australia
| | - Agathe M G Colmant
- School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia
| | - Caitlin A O'Brien
- School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia
| | - Jessica J Harrison
- School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia
| | - Breeanna J McLean
- School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia.,Present address: Monash University, Institute of Vector-Borne Disease, 12 Innovation Walk, Clayton, VIC 3800, Australia
| | - Elise K Hewlett
- School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Research and Development, Australian Red Cross Blood Service, Brisbane, Queensland, Australia
| | - Thisun B H Piyasena
- School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia
| | - Sonja Hall-Mendelin
- Public Health Virology, Queensland Health Forensic and Scientific Services (QHFSS), Queensland, Australia
| | - Andrew F van den Hurk
- Public Health Virology, Queensland Health Forensic and Scientific Services (QHFSS), Queensland, Australia
| | - Daniel Watterson
- School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia
| | - Bixing Huang
- Public Health Virology, Queensland Health Forensic and Scientific Services (QHFSS), Queensland, Australia
| | - Benjamin L Schulz
- School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia
| | - Cameron E Webb
- Medical Entomology Marie Bashir Institute of Infectious Diseases and Biosecurity, The University of Sydney, Sydney, NSW, Australia
| | - Cheryl A Johansen
- PathWest Laboratory Medicine WA, Nedlands, Western Australia, Australia.,School of Biomedical Sciences, The University of Western Australia, Nedlands, Western Australia, Australia
| | - Weng K Chow
- Australian Defence Force Malaria Infectious and Disease Institute, Gallipoli Barracks, Enoggera Queensland 4051, Australia
| | - Jody Hobson-Peters
- School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia
| | - Chris Cazier
- Queensland University of Technology, Brisbane, Queensland, Australia
| | - Lark L Coffey
- Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, USA
| | - Helen M Faddy
- Research and Development, Australian Red Cross Blood Service, Brisbane, Queensland, Australia
| | - Andreas Suhrbier
- QIMR Berghofer Medical Research Institute, Herston, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia
| | - Helle Bielefeldt-Ohmann
- School of Veterinary Science, The University of Queensland, Gatton, Queensland, Australia.,Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia
| | - Roy A Hall
- Australian Infectious Diseases Research Centre, The University of Queensland, Queensland, Australia.,School of Chemistry and Molecular Biosciences, The University of Queensland, Queensland, Australia
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6
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Xia H, Wang Y, Atoni E, Zhang B, Yuan Z. Mosquito-Associated Viruses in China. Virol Sin 2018; 33:5-20. [PMID: 29532388 PMCID: PMC5866263 DOI: 10.1007/s12250-018-0002-9] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Accepted: 12/05/2017] [Indexed: 10/30/2022] Open
Abstract
Mosquitoes are classified into approximately 3500 species and further grouped into 41 genera. Epidemiologically, they are considered to be among the most important disease vectors in the world and they can harbor a wide variety of viruses. Several mosquito viruses are considered to be of significant medical importance and can cause serious public health issues throughout the world. Such viruses are Japanese encephalitis virus (JEV), dengue virus (DENV), chikungunya virus (CHIKV), and Zika virus (ZIKV). Others are the newly recognized mosquito viruses such as Banna virus (BAV) and Yunnan orbivirus (YNOV) with unclear medical significance. The remaining mosquito viruses are those that naturally infect mosquitoes but do not appear to infect humans or other vertebrates. With the continuous development and improvement of mosquito and mosquito-associated virus surveillance systems in China, many novel mosquito-associated viruses have been discovered in recent years. This review aims to systematically outline the history, characteristics, distribution, and/or current epidemic status of mosquito-associated viruses in China.
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Affiliation(s)
- Han Xia
- Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, China
| | - Yujuan Wang
- Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Evans Atoni
- Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Bo Zhang
- Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, China
| | - Zhiming Yuan
- Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, China.
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7
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Liang G, Li X, Gao X, Fu S, Wang H, Li M, Lu Z, Zhu W, Lu X, Wang L, Cao Y, He Y, Lei W. Arboviruses and their related infections in China: A comprehensive field and laboratory investigation over the last 3 decades. Rev Med Virol 2017; 28. [PMID: 29210509 DOI: 10.1002/rmv.1959] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Revised: 09/27/2017] [Accepted: 10/04/2017] [Indexed: 01/10/2023]
Abstract
Since the 1980s, a comprehensive field and laboratory investigation has been conducted throughout China, and a total of 29 virus species belonging to 7 families and 13 genera were identified through virological, morphological, and immunological methods, as well as whole-genome sequencing and molecular genetic analyses. Most of the virus isolates belong to 9 genera in the families Flaviviridae, Bunyaviridae, Togaviridae, and Reoviridae. Among them, 4 genera (Orthobunyavirus, Bunyavirus, Phlebovirus, and Nairovirus) belong to the family Bunyaviridae and 3 genera (Seadonavirus, Orbivirus, and Cypovirus) belong to the family Reoviridae. Analyses of the relationships between viruses and human/animal diseases indicated that Japanese encephalitis virus, dengue virus, severe fever with thrombocytopenia syndrome virus, tick-borne encephalitis virus, Crimean-Congo hemorrhagic fever virus, West Nile virus, and Tahyna virus can cause human and animal infections and disease epidemics in China. This review systematically introduces the current status of the diversity and geographical distribution of arboviruses and vectors in China. In addition, our results provide strong technical support for the prevention and control of arboviral diseases, the treatment of epidemics, and the early warning and prediction of diseases, and so they are significant for the control and prevention of arboviral diseases in Asia and around the world.
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Affiliation(s)
- Guodong Liang
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Xiaolong Li
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Xiaoyan Gao
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Shihong Fu
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Huanyu Wang
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Minghua Li
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Zhi Lu
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Wuyang Zhu
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Xinjun Lu
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Lihua Wang
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Yuxi Cao
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Ying He
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Wenwen Lei
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
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8
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Molecular evolution of emerging Banna virus. INFECTION GENETICS AND EVOLUTION 2016; 45:250-255. [PMID: 27590713 DOI: 10.1016/j.meegid.2016.08.034] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2016] [Revised: 08/24/2016] [Accepted: 08/29/2016] [Indexed: 11/22/2022]
Abstract
Banna virus (BAV) is an emerging pathogen that causes human viral encephalitis and has been isolated from types of blood-sucking insects and mammals in Asia. However, there are no reported systematic studies that describe the origin and evolution of BAV. Here, a phylogenetic analysis of BAVs isolated from a variety of potential vectors and vertebrate hosts worldwide revealed that BAVs emerged in the beginning of the 20th century and do not exhibit a species barrier. The mean substitution rate of BAVs was 2.467×10-2substitution/site/year (95% HPD, 1.093×10-3 to 5.628×10-2). The lineage is mainly composed of BAVs from high-latitude regions, which are the most recently emerged viruses with significantly higher substitution rates compared with the lineage comprised of the isolates from middle or low-latitude regions. The genetic differences between BAV strains are positively correlated with the geographic distribution. Strains from the same latitude regions are almost 100% identical, whereas the differences between strains from long distance regions with different latitudes could be >60%. Our results demonstrate that BAV is an emerging virus at a stage that involves rapid evolution and has great potential for introduction into non-endemic areas. Thus, enhanced surveillance of BAV is highly recommended worldwide.
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9
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A multiplex ELISA-based protein array for screening diagnostic antigens and diagnosis of Flaviviridae infection. Eur J Clin Microbiol Infect Dis 2015; 34:1327-36. [DOI: 10.1007/s10096-015-2353-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2014] [Accepted: 02/16/2015] [Indexed: 10/23/2022]
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10
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Coffey LL, Page BL, Greninger AL, Herring BL, Russell RC, Doggett SL, Haniotis J, Wang C, Deng X, Delwart EL. Enhanced arbovirus surveillance with deep sequencing: Identification of novel rhabdoviruses and bunyaviruses in Australian mosquitoes. Virology 2013; 448:146-58. [PMID: 24314645 DOI: 10.1016/j.virol.2013.09.026] [Citation(s) in RCA: 88] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2013] [Revised: 09/06/2013] [Accepted: 09/28/2013] [Indexed: 01/22/2023]
Abstract
Viral metagenomics characterizes known and identifies unknown viruses based on sequence similarities to any previously sequenced viral genomes. A metagenomics approach was used to identify virus sequences in Australian mosquitoes causing cytopathic effects in inoculated mammalian cell cultures. Sequence comparisons revealed strains of Liao Ning virus (Reovirus, Seadornavirus), previously detected only in China, livestock-infecting Stretch Lagoon virus (Reovirus, Orbivirus), two novel dimarhabdoviruses, named Beaumont and North Creek viruses, and two novel orthobunyaviruses, named Murrumbidgee and Salt Ash viruses. The novel virus proteomes diverged by ≥ 50% relative to their closest previously genetically characterized viral relatives. Deep sequencing also generated genomes of Warrego and Wallal viruses, orbiviruses linked to kangaroo blindness, whose genomes had not been fully characterized. This study highlights viral metagenomics in concert with traditional arbovirus surveillance to characterize known and new arboviruses in field-collected mosquitoes. Follow-up epidemiological studies are required to determine whether the novel viruses infect humans.
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Affiliation(s)
- Lark L Coffey
- Blood Systems Research Institute, University of California, San Francisco, USA; Department of Laboratory Medicine, University of California, 270 Masonic Avenue, San Francisco, CA 94118, USA
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11
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Li XL, Fu SH, Liu WB, Wang HY, Lu Z, Tong SX, Li ZX, Nasci RS, Kosoy O, Cui Y, Liang GD. West nile virus infection in Xinjiang, China. Vector Borne Zoonotic Dis 2013; 13:131-3. [PMID: 23289395 DOI: 10.1089/vbz.2012.0995] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
An outbreak of fever and meningitis/encephalitis occurred in Xinjiang, China, from August 5 to September 3, 2004. In preliminary diagnostic testing, several cerebrospinal fluid (CSF) and serum samples showed positive immunoglobulin M (IgM) antibody to Japanese encephalitis virus. Here, the CSF and serum samples of 6 cases collected at that time were tested by immunofluorescence assay (IFA), enzyme-linked immunosorbent assay (ELISA), and plaque reduction neutralization assay (PRNT) for the existence of IgM antibody or neutralization antibody against West Nile virus (WNV) or other arboviruses. The results demonstrate the evidence of West Nile infection in Xinjiang, China.
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Affiliation(s)
- Xin-Lan Li
- Xinjiang Center for Disease Control and Prevention, Xinjiang, China
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12
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Zheng Y, Li M, Wang H, Liang G. Japanese encephalitis and Japanese encephalitis virus in mainland China. Rev Med Virol 2012; 22:301-22. [PMID: 22407526 DOI: 10.1002/rmv.1710] [Citation(s) in RCA: 113] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2011] [Revised: 01/16/2012] [Accepted: 01/19/2012] [Indexed: 11/06/2022]
Abstract
Japanese encephalitis (JE), caused by Japanese encephalitis virus (JEV) infection, is the most important viral encephalitis in the world. Approximately 35,000-50,000 people suffer from JE every year, with a mortality rate of 10,000-15,000 people per year. Although the safety and efficacy of JE vaccines (inactivated and attenuated) have been demonstrated, China still accounts for 50% of the reported JE cases worldwide. In this review, we provide information about the burden of JE in mainland China and the corresponding epidemiology from 1949 to 2010, including the morbidity and mortality of JE; the age, gender, and vocational distribution of JE cases; its regional and seasonal distribution; and JE immunization. In addition, we discuss the relationships among vectors, hosts, and JEV isolates from mainland China; the dominant vector species for JEV transmission; the variety of JEV genotypes and the different biological characteristics of the different JEV genotypes; and the molecular evolution of JEV.
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Affiliation(s)
- Yayun Zheng
- School of Public Health, Shandong University, Jinan, Shandong Province, China
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