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Kong W, Kong J, Feng S, Yang T, Xu L, Shen B, Bi Y, Lyu H. Cultivation of microalgae-bacteria consortium by waste gas-waste water to achieve CO 2 fixation, wastewater purification and bioproducts production. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2024; 17:26. [PMID: 38360745 PMCID: PMC10870688 DOI: 10.1186/s13068-023-02409-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Accepted: 10/10/2023] [Indexed: 02/17/2024]
Abstract
The cultivation of microalgae and microalgae-bacteria consortia provide a potential efficient strategy to fix CO2 from waste gas, treat wastewater and produce value-added products subsequently. This paper reviews recent developments in CO2 fixation and wastewater treatment by single microalgae, mixed microalgae and microalgae-bacteria consortia, as well as compares and summarizes the differences in utilizing different microorganisms from different aspects. Compared to monoculture of microalgae, a mixed microalgae and microalgae-bacteria consortium may mitigate environmental risk, obtain high biomass, and improve the efficiency of nutrient removal. The applied microalgae include Chlorella sp., Scenedesmus sp., Pediastrum sp., and Phormidium sp. among others, and most strains belong to Chlorophyta and Cyanophyta. The bacteria in microalgae-bacteria consortia are mainly from activated sludge and specific sewage sources. Bioengineer in CBB cycle in microalgae cells provide effective strategy to achieve improvement of CO2 fixation or a high yield of high-value products. The mechanisms of CO2 fixation and nutrient removal by different microbial systems are also explored and concluded, the importance of microalgae in the technology is proven. After cultivation, microalgae biomass can be harvested through physical, chemical, biological and magnetic separation methods and used to produce high-value by-products, such as biofuel, feed, food, biochar, fertilizer, and pharmaceutical bio-compounds. Although this technology has brought many benefits, some challenging obstacles and limitation remain for industrialization and commercializing.
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Affiliation(s)
- Wenwen Kong
- Tianjin Key Laboratory of Clean Energy and Pollution Control, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, People's Republic of China
- Hebei Engineering Research Center of Pollution Control in Power System, Hebei University of Technology, Tianjin, 300401, People's Republic of China
| | - Jia Kong
- Tianjin Key Laboratory of Clean Energy and Pollution Control, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, People's Republic of China
- Hebei Engineering Research Center of Pollution Control in Power System, Hebei University of Technology, Tianjin, 300401, People's Republic of China
| | - Shuo Feng
- Tianjin Key Laboratory of Clean Energy and Pollution Control, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, People's Republic of China
- Hebei Engineering Research Center of Pollution Control in Power System, Hebei University of Technology, Tianjin, 300401, People's Republic of China
| | - TianTian Yang
- Tianjin Key Laboratory of Clean Energy and Pollution Control, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, People's Republic of China
- Hebei Engineering Research Center of Pollution Control in Power System, Hebei University of Technology, Tianjin, 300401, People's Republic of China
| | - Lianfei Xu
- Tianjin Key Laboratory of Clean Energy and Pollution Control, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, People's Republic of China
- Hebei Engineering Research Center of Pollution Control in Power System, Hebei University of Technology, Tianjin, 300401, People's Republic of China
| | - Boxiong Shen
- Tianjin Key Laboratory of Clean Energy and Pollution Control, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, People's Republic of China.
- Hebei Engineering Research Center of Pollution Control in Power System, Hebei University of Technology, Tianjin, 300401, People's Republic of China.
| | - Yonghong Bi
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, People's Republic of China.
| | - Honghong Lyu
- Tianjin Key Laboratory of Clean Energy and Pollution Control, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, People's Republic of China.
- Hebei Engineering Research Center of Pollution Control in Power System, Hebei University of Technology, Tianjin, 300401, People's Republic of China.
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Dubey KK, Kumar A, Baldia A, Rajput D, Kateriya S, Singh R, Nikita, Tandon R, Mishra YK. Biomanufacturing of glycosylated antibodies: Challenges, solutions, and future prospects. Biotechnol Adv 2023; 69:108267. [PMID: 37813174 DOI: 10.1016/j.biotechadv.2023.108267] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 09/03/2023] [Accepted: 09/28/2023] [Indexed: 10/11/2023]
Abstract
Traditionally, recombinant protein production has been done in several expression hosts of bacteria, fungi, and majorly CHO (Chinese Hamster Ovary) cells; few have high production costs and are susceptible to harmful toxin contamination. Green algae have the potential to produce recombinant proteins in a more sustainable manner. Microalgal diversity leads to offer excellent opportunities to produce glycosylated antibodies. An antibody with humanized glycans plays a crucial role in cellular communication that works to regulate cells and molecules, to control disease, and to stimulate immunity. Therefore, it becomes necessary to understand the role of abiotic factors (light, temperature, pH, etc.) in the production of bioactive molecules and molecular mechanisms of product synthesis from microalgae which would lead to harnessing the potential of algal bio-refinery. However, the potential of microalgae as the source of bio-refinery has been less explored. In the present review, omics approaches for microalgal engineering, methods of humanized glycoproteins production focusing majorly on N-glycosylation pathways, light-based regulation of glycosylation machinery, and production of antibodies with humanized glycans in microalgae with a major emphasis on modulation of post-translation machinery of microalgae which might play a role in better understanding of microalgal potential as a source for antibody production along with future perspectives.
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Affiliation(s)
- Kashyap Kumar Dubey
- Biomanufacturing and Process Development Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India.
| | - Akshay Kumar
- Biomanufacturing and Process Development Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Anshu Baldia
- Biomanufacturing and Process Development Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Deepanshi Rajput
- Biomanufacturing and Process Development Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Suneel Kateriya
- Laboratory of Optobiotechnology, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Rajani Singh
- Laboratory of Optobiotechnology, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Nikita
- Laboratory of AIDS Research and Immunology, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Ravi Tandon
- Laboratory of AIDS Research and Immunology, School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India
| | - Yogendra Kumar Mishra
- Mads Clausen Institute, NanoSYD, University of Southern Denmark, Alison 2, 6400 Sønderborg, Denmark.
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Zhang N, Deng C, Hong T, Ren J, Zhang Y, Li F, Dong Z, Hu Z, Huang X, Li C. Transcriptome Analysis Revealed the Advantages of Room Temperature Preservation of Concentrated Oocystis borgei Cultures for Use in Aquaculture. Int J Mol Sci 2023; 24:16225. [PMID: 38003417 PMCID: PMC10671278 DOI: 10.3390/ijms242216225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 11/08/2023] [Accepted: 11/09/2023] [Indexed: 11/26/2023] Open
Abstract
Oocystis borgei, a microalgae species employed for regulating the quality of aquaculture water, demonstrates the capacity to adsorb noxious substances, curtail the growth of detrimental bacteria, and outcompete blooming cyanobacteria. It can be concentrated by natural sedimentation and stored at room temperature, making it costless and simple to transport and use. To study the mechanism of adaptation to room temperature preservation, O. borgei was concentrated (1.19 × 107-1.21 × 107 cell/mL) and stored for 50 days at low (5 °C, LT), normal (25 °C, NT), and high (35 °C, HT) temperatures, respectively. Polysaccharide content, lipid content, cell survival, and resuscitation were evaluated. RNA-Seq was also used to examine how concentrated O. borgei responded to temperature. During storage, there was an increase in polysaccharide content and a decrease in lipid content, with both being significantly upregulated in the LT and HT groups. Survival and cell density were highest in the NT group. The RNA-Seq analysis revealed extensive differences in transcript levels. ATP synthesis was inhibited in the LT group due to the reduced expression of PsaD, PsaE, PsaF, PsaK, and PsaL. Under HT, the formation of reactive oxygen species (ROS) was facilitated by low levels of redox-related genes (nirA) and high levels of oxidative genes (gdhA, glna, and glts). The findings suggest that storing concentrated O. borgei at room temperature is optimal for microalgae preservation, enhancing theoretical research in this field. Our study provides further theoretical and practical support for the development of O. borgei as a live ecological preparation for aquaculture microalgae ecology management.
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Affiliation(s)
- Ning Zhang
- Lab of Algae Resource Development and Aquaculture Environment Ecological Restoration, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China; (N.Z.); (C.D.); (T.H.); (J.R.); (Y.Z.); (F.L.); (Z.D.); (Z.H.); (X.H.)
| | - Chengcheng Deng
- Lab of Algae Resource Development and Aquaculture Environment Ecological Restoration, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China; (N.Z.); (C.D.); (T.H.); (J.R.); (Y.Z.); (F.L.); (Z.D.); (Z.H.); (X.H.)
| | - Ting Hong
- Lab of Algae Resource Development and Aquaculture Environment Ecological Restoration, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China; (N.Z.); (C.D.); (T.H.); (J.R.); (Y.Z.); (F.L.); (Z.D.); (Z.H.); (X.H.)
| | - Jiajia Ren
- Lab of Algae Resource Development and Aquaculture Environment Ecological Restoration, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China; (N.Z.); (C.D.); (T.H.); (J.R.); (Y.Z.); (F.L.); (Z.D.); (Z.H.); (X.H.)
| | - Yulei Zhang
- Lab of Algae Resource Development and Aquaculture Environment Ecological Restoration, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China; (N.Z.); (C.D.); (T.H.); (J.R.); (Y.Z.); (F.L.); (Z.D.); (Z.H.); (X.H.)
| | - Feng Li
- Lab of Algae Resource Development and Aquaculture Environment Ecological Restoration, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China; (N.Z.); (C.D.); (T.H.); (J.R.); (Y.Z.); (F.L.); (Z.D.); (Z.H.); (X.H.)
| | - Zhongdian Dong
- Lab of Algae Resource Development and Aquaculture Environment Ecological Restoration, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China; (N.Z.); (C.D.); (T.H.); (J.R.); (Y.Z.); (F.L.); (Z.D.); (Z.H.); (X.H.)
- Guangdong Provincial Key Laboratory of Aquatic Animal Disease Control and Healthy Culture, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China
| | - Zhangxi Hu
- Lab of Algae Resource Development and Aquaculture Environment Ecological Restoration, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China; (N.Z.); (C.D.); (T.H.); (J.R.); (Y.Z.); (F.L.); (Z.D.); (Z.H.); (X.H.)
| | - Xianghu Huang
- Lab of Algae Resource Development and Aquaculture Environment Ecological Restoration, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China; (N.Z.); (C.D.); (T.H.); (J.R.); (Y.Z.); (F.L.); (Z.D.); (Z.H.); (X.H.)
| | - Changling Li
- Lab of Algae Resource Development and Aquaculture Environment Ecological Restoration, Fisheries College, Guangdong Ocean University, Zhanjiang 524088, China; (N.Z.); (C.D.); (T.H.); (J.R.); (Y.Z.); (F.L.); (Z.D.); (Z.H.); (X.H.)
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Montoya-Rosales JDJ, Ontiveros-Valencia A, Esquivel-Hernández DA, Etchebehere C, Celis LB, Razo-Flores E. Metatranscriptomic Analysis Reveals the Coexpression of Hydrogen-Producing and Homoacetogenesis Genes in Dark Fermentative Reactors Operated at High Substrate Loads. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:11552-11560. [PMID: 37494704 DOI: 10.1021/acs.est.3c02066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/28/2023]
Abstract
Microbial communities in dark fermentation continuous systems are affected by substrate type, concentration, and product accumulation (e.g., H2 and CO2). Metatranscriptomics and quantitative PCR (qPCR) were used to assess how high organic loading rates (OLR) from 60 to 160 g total carbohydrates (TC)/L-d modify the microbial community diversity and expression of key dark fermentative genes. Overall, the microbial communities were composed of H2-producing bacteria (Clostridium butyricum), homoacetogens (Clostridium luticellarii), and lactic acid bacteria (Enteroccocus gallinarum and Leuconostoc mesenteroides). Quantification through qPCR showed that the abundance of genes encoding the formyltetrahydrofolate synthetase (fthfs, homoacetogens) and hydrogenase (hydA, H2-producing bacteria) was strongly associated with the OLR and H2 production performance. Similarly, increasing the OLR influenced the abundance of the gene transcripts responsible for H2 production and homoacetogenesis. To evaluate the effect of decreasing the H2 partial pressure, silicone oil was added to the reactor at an OLR of 138 and 160 g TC/L-d, increasing the production of H2, the copies of genes codifying for hydA and fthfs, and the genes transcripts related to H2 production and homoacetogenesis. Moreover, the metatranscriptomic analysis also showed that lactate-type fermentation and dark fermentation simultaneously occurred without compromising the reactor performance for H2 production.
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Affiliation(s)
- José de Jesús Montoya-Rosales
- División de Ciencias Ambientales, Instituto Potosino de Investigación Científica y Tecnológica A.C., Camino a la Presa San José 2055, Lomas 4a Sección, C.P. 78216 San Luis Potosí, SLP, Mexico
| | - Aura Ontiveros-Valencia
- División de Ciencias Ambientales, Instituto Potosino de Investigación Científica y Tecnológica A.C., Camino a la Presa San José 2055, Lomas 4a Sección, C.P. 78216 San Luis Potosí, SLP, Mexico
| | - Diego A Esquivel-Hernández
- Departamento de Procesos y Tecnología, Universidad Autónoma Metropolitana Cuajimalpa, Avenida Vasco de Quiroga 4871, Colonia Santa Fe Cuajimalpa, C.P. 05300 Ciudad de México, Mexico
| | - Claudia Etchebehere
- Laboratorio de Ecología Microbiana, Departamento de Bioquímica y Genómica Microbiana, Instituto de Investigaciones Biológicas Clemente Estable, Avenida Italia 3318, C.P. 11600 Montevideo, Uruguay
| | - Lourdes B Celis
- División de Ciencias Ambientales, Instituto Potosino de Investigación Científica y Tecnológica A.C., Camino a la Presa San José 2055, Lomas 4a Sección, C.P. 78216 San Luis Potosí, SLP, Mexico
| | - Elías Razo-Flores
- División de Ciencias Ambientales, Instituto Potosino de Investigación Científica y Tecnológica A.C., Camino a la Presa San José 2055, Lomas 4a Sección, C.P. 78216 San Luis Potosí, SLP, Mexico
- Departamento de Procesos y Tecnología, Universidad Autónoma Metropolitana Cuajimalpa, Avenida Vasco de Quiroga 4871, Colonia Santa Fe Cuajimalpa, C.P. 05300 Ciudad de México, Mexico
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Grama SB, Liu Z, Li J. Emerging Trends in Genetic Engineering of Microalgae for Commercial Applications. Mar Drugs 2022; 20:285. [PMID: 35621936 PMCID: PMC9143385 DOI: 10.3390/md20050285] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 04/15/2022] [Accepted: 04/19/2022] [Indexed: 02/04/2023] Open
Abstract
Recently, microalgal biotechnology has received increasing interests in producing valuable, sustainable and environmentally friendly bioproducts. The development of economically viable production processes entails resolving certain limitations of microalgal biotechnology, and fast evolving genetic engineering technologies have emerged as new tools to overcome these limitations. This review provides a synopsis of recent progress, current trends and emerging approaches of genetic engineering of microalgae for commercial applications, including production of pharmaceutical protein, lipid, carotenoids and biohydrogen, etc. Photochemistry improvement in microalgae and CO2 sequestration by microalgae via genetic engineering were also discussed since these subjects are closely entangled with commercial production of the above mentioned products. Although genetic engineering of microalgae is proved to be very effective in boosting performance of production in laboratory conditions, only limited success was achieved to be applicable to industry so far. With genetic engineering technologies advancing rapidly and intensive investigations going on, more bioproducts are expected to be produced by genetically modified microalgae and even much more to be prospected.
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Affiliation(s)
- Samir B. Grama
- Laboratory of Natural Substances, Biomolecules and Biotechnological Applications, University of Oum El Bouaghi, Oum El Bouaghi 04000, Algeria;
| | - Zhiyuan Liu
- College of Marine Sciences, Hainan University, Haikou 570228, China;
| | - Jian Li
- College of Agricultural Sciences, Panzhihua University, Panzhihua 617000, China
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Sirohi R, Joun J, Choi HI, Gaur VK, Sim SJ. Algal glycobiotechnology: omics approaches for strain improvement. Microb Cell Fact 2021; 20:163. [PMID: 34419059 PMCID: PMC8379821 DOI: 10.1186/s12934-021-01656-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 08/12/2021] [Indexed: 12/18/2022] Open
Abstract
Microalgae has the capability to replace petroleum-based fuels and is a promising option as an energy feedstock because of its fast growth, high photosynthetic capacity and remarkable ability to store energy reserve molecules in the form of lipids and starch. But the commercialization of microalgae based product is difficult due to its high processing cost and low productivity. Higher accumulation of these molecules may help to cut the processing cost. There are several reports on the use of various omics techniques to improve the strains of microalgae for increasing the productivity of desired products. To effectively use these techniques, it is important that the glycobiology of microalgae is associated to omics approaches to essentially give rise to the field of algal glycobiotechnology. In the past few decades, lot of work has been done to improve the strain of various microalgae such as Chlorella, Chlamydomonas reinhardtii, Botryococcus braunii etc., through genome sequencing and metabolic engineering with major focus on significantly increasing the productivity of biofuels, biopolymers, pigments and other products. The advancements in algae glycobiotechnology have highly significant role to play in innovation and new developments for the production algae-derived products as above. It would be highly desirable to understand the basic biology of the products derived using -omics technology together with biochemistry and biotechnology. This review discusses the potential of different omic techniques (genomics, transcriptomics, proteomics, metabolomics) to improve the yield of desired products through algal strain manipulation.
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Affiliation(s)
- Ranjna Sirohi
- Department of Chemical & Biological Engineering, Korea University, Seoul, 136713, Republic of Korea
| | - Jaemin Joun
- Department of Chemical & Biological Engineering, Korea University, Seoul, 136713, Republic of Korea
| | - Hong Ii Choi
- Department of Chemical & Biological Engineering, Korea University, Seoul, 136713, Republic of Korea
| | - Vivek Kumar Gaur
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Lucknow, 226 001, India
| | - Sang Jun Sim
- Department of Chemical & Biological Engineering, Korea University, Seoul, 136713, Republic of Korea.
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El-Dalatony MM, Zheng Y, Ji MK, Li X, Salama ES. Metabolic pathways for microalgal biohydrogen production: Current progress and future prospectives. BIORESOURCE TECHNOLOGY 2020; 318:124253. [PMID: 33129070 DOI: 10.1016/j.biortech.2020.124253] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2020] [Revised: 10/06/2020] [Accepted: 10/09/2020] [Indexed: 06/11/2023]
Abstract
Microalgal biohydrogen (bioH2) has attracted global interest owing to its potential carbon-free source of sustainable renewable energy. Most of previous reviews which focused on microalgal bioH2, have shown unclear differentiation among the metabolic pathways. In this review, investigation of all different metabolic pathways for microalgal bioH2 production along with discussion on the recent research work of last 5-years have been considered. The major factors (such as light, vital nutrients, microalgal cell density, and substrate bioavailability) are highlighted. Moreover, effect of various pretreatment approaches on the constituent's bioaccessibility is reported. Microbial electrolysis cells as a new strategy for bioH2 production is stated. Comparison between the operation conditions of various bioreactors and economic feasibility is also emphasized. Genetic, metabolic engineering, and synthetic biology as recent technologies improved the microalgal bioH2 production through inactivation of uptake hydrogenase (H2ase), inhibition of the competing pathways in polysaccharide synthesis, and improving the O2 tolerant H2ase.
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Affiliation(s)
- Marwa M El-Dalatony
- Department of Occupational and Environmental Health, School of Public Health, Lanzhou University, Lanzhou 730000, Gansu Province, PR China; School of Life Sciences, Lanzhou University, Lanzhou 730000, Gansu Province, PR China
| | - Yuanzhang Zheng
- Department of Molecular Biology, School of Medicine Biochemistry, Indiana University, Indianapolis 46202, USA
| | - Min-Kyu Ji
- Environmental Assessment Group, Korea Environment Institute, Yeongi-gun 30147, South Korea
| | - Xiangkai Li
- Department of Occupational and Environmental Health, School of Public Health, Lanzhou University, Lanzhou 730000, Gansu Province, PR China
| | - El-Sayed Salama
- Department of Occupational and Environmental Health, School of Public Health, Lanzhou University, Lanzhou 730000, Gansu Province, PR China.
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Influence of nutrient status on the biohydrogen and lipid productivity in Parachlorella kessleri: a biorefinery approach. Appl Microbiol Biotechnol 2020; 104:10293-10305. [PMID: 33025127 DOI: 10.1007/s00253-020-10930-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Revised: 09/13/2020] [Accepted: 09/23/2020] [Indexed: 10/23/2022]
Abstract
The commercial reality of microalgal biotechnology for the production of individual bioactives is constrained by the high cost of production and requires a biorefinery approach. In this investigation, we examined the influence of different nutrient deprivation (nitrogen (N), phosphorus (P), sulphur (S) and manganese (Mn)) on growth, chlorophyll a (Chl a), biohydrogen (H2) and fatty acid profiles in Parachlorella kessleri EMCCN 3073 under both aerobic and anaerobic conditions. Anaerobic conditions combined with the nutrient deprivation resulted in cell division blockage, reduction in Chl a and remarkable changes in pH, whereas a significant increase in the H2 production was observed after 24 h. The highest cumulative H2 productivity was observed in N-deficient medium (300 μL/L, day 9) followed by Mn-deficient medium (250 μL/L, day 7). The highest H2 production rate (3.37 μL/L/h) was achieved by Mn-deficient medium after 24 h. In terms of fatty acid composition, P. kessleri exhibited a differential response to different nutrient stresses. Under aerobic conditions, N-deficient media resulted in the highest lipid content (119% compared to control, day 7), whereas earlier lipid induction at (1-3 days) was observed with Mn- and S-deficient media with 18-91% and 25-34% increase, respectively, compared with the replete control. Meanwhile, higher lipid content was observed under anaerobic conditions combined with Mn-, N-, P- and S-deprived media (day 1) with 20%, 13%, 8% and 7% increases respectively compared with the control. This investigation, for the first time clearly, highlights the potential of P. kessleri as a sustainable biorefinery platform, for H2 and fatty acid bio-production under anaerobic conditions. KEY POINTS: • Parachlorella kessleri could provide a future sustainable biorefinery platform. • Nutrient-deprived anaerobic conditions blocked cell growth but differentially induced H2 production. • Nutrient status, under both aerobic/anaerobic conditions, alters lipids and fatty acids profile of P. kessleri. • Nutrient-deprived (N- and Mn-) anaerobic conditions: future biorefinery platform.
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Stimulation of Hydrogen Photoproduction in Chlorella sorokiniana Subjected to Simultaneous Nitrogen Limitation and Sulfur- and/or Phosphorus-Deprivation. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2018. [DOI: 10.22207/jpam.12.4.04] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Vargas SR, Santos PVD, Giraldi LA, Zaiat M, Calijuri MDC. Anaerobic phototrophic processes of hydrogen production by different strains of microalgae Chlamydomonas sp. FEMS Microbiol Lett 2018; 365:4953416. [DOI: 10.1093/femsle/fny073] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Accepted: 03/23/2018] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sarah Regina Vargas
- Department of Hydraulic and Sanitation, Universidade de São Paulo Escola de Engenharia de São Carlos, Av. Trabalhador São-carlense, 400, Arnold Schimidt, São Carlos 13566-590, Brazil
| | - Paulo Vagner dos Santos
- Department of Hydraulic and Sanitation, Universidade de São Paulo Escola de Engenharia de São Carlos, Av. Trabalhador São-carlense, 400, Arnold Schimidt, São Carlos 13566-590, Brazil
| | - Laís Albuquerque Giraldi
- Department of Hydraulic and Sanitation, Universidade de São Paulo Escola de Engenharia de São Carlos, Av. Trabalhador São-carlense, 400, Arnold Schimidt, São Carlos 13566-590, Brazil
| | - Marcelo Zaiat
- Department of Hydraulic and Sanitation, Universidade de São Paulo Escola de Engenharia de São Carlos, Av. João Dagnone, 1100, Santa Angelina, São Carlos-SP, 13563-120, Brazil
| | - Maria do Carmo Calijuri
- Department of Hydraulic and Sanitation, Universidade de São Paulo Escola de Engenharia de São Carlos, Av. Trabalhador São-carlense, 400, Arnold Schimidt, São Carlos 13566-590, Brazil
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Sekoai PT, Daramola MO. Effect of metal ions on dark fermentative biohydrogen production using suspended and immobilized cells of mixed bacteria. CHEM ENG COMMUN 2018. [DOI: 10.1080/00986445.2018.1428958] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Patrick T. Sekoai
- Sustainable Energy and Environment Research Unit, Faculty of Engineering and the Built Environment, School of Chemical and Metallurgical Engineering, University of the Witwatersrand, Johannesburg, South Africa
| | - Michael O. Daramola
- Sustainable Energy and Environment Research Unit, Faculty of Engineering and the Built Environment, School of Chemical and Metallurgical Engineering, University of the Witwatersrand, Johannesburg, South Africa
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Li H, Liu Y, Wang Y, Chen M, Zhuang X, Wang C, Wang J, Hu Z. Improved photobio-H 2 production regulated by artificial miRNA targeting psbA in green microalga Chlamydomonas reinhardtii. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:36. [PMID: 29449884 PMCID: PMC5808451 DOI: 10.1186/s13068-018-1030-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Accepted: 01/23/2018] [Indexed: 06/01/2023]
Abstract
BACKGROUND Sulfur-deprived cultivation of Chlamydomonas reinhardtii, referred as "two-stage culture" transferring the cells from regular algal medium to sulfur-deplete one, has been extensively studied to improve photobio-H2 production in this green microalga. During sulfur-deprivation treatment, the synthesis of a key component of photosystem II complex, D1 protein, was inhibited and improved photobio-H2 production could be established in C. reinhardtii. However, separation of algal cells from a regular liquid culture medium to a sulfur-deprived one is not only a discontinuous process, but also a cost- and time-consuming operation. More applicable and economic alternatives for sustained H2 production by C. reinhardtii are still highly required. RESULTS In the present study, a significant improvement in photobio-H2 production was observed in the transgenic green microalga C. reinhardtii, which employed a newly designed strategy based on a heat-inducible artificial miRNA (amiRNA) expression system targeting D1-encoded gene, psbA. A transgenic algal strain referred as "amiRNA-D1" has been successfully obtained by transforming the expression vector containing a heat-inducible promoter. After heat shock conducted in the same algal cultures, the expression of amiRNA-D1 was detected increased 15-fold accompanied with a 73% decrease of target gene psbA. More interestingly, this transgenic alga accumulated about 60% more H2 content than the wild-type strain CC-849 at the end of 7-day cultivation. CONCLUSIONS The photobio-H2 production in the engineered transgenic alga was significantly improved. Without imposing any nutrient-deprived stress, this novel strategy provided a convenient and efficient way for regulation of photobio-H2 production in green microalga by simply "turn on" the expression of a designed amiRNA.
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Affiliation(s)
- Hui Li
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Yanmei Liu
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Yuting Wang
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Meirong Chen
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Xiaoshan Zhuang
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Chaogang Wang
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Jiangxin Wang
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Zhangli Hu
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
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Wang Y, Zhuang X, Chen M, Zeng Z, Cai X, Li H, Hu Z. An endogenous microRNA (miRNA1166.1) can regulate photobio-H 2 production in eukaryotic green alga Chlamydomonas reinhardtii. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:126. [PMID: 29743954 PMCID: PMC5930490 DOI: 10.1186/s13068-018-1126-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2018] [Accepted: 04/20/2018] [Indexed: 05/12/2023]
Abstract
BACKGROUND Hydrogen photoproduction from green microalgae is regarded as a promising alternative solution for energy problems. However, the simultaneous oxygen evolution from microalgae can prevent continuous hydrogen production due to the hypersensitivity of hydrogenases to oxygen. Sulfur deprivation can extend the duration of algal hydrogen production, but it is uneconomical to alternately culture algal cells in sulfur-sufficient and sulfur-deprived media. RESULTS In this study, we developed a novel way to simulate sulfur-deprivation treatment while constantly maintaining microalgal cells in sulfur-sufficient culture medium by overexpressing an endogenous microRNA (miR1166.1). Based on our previous RNA-seq analysis in the model green alga Chlamydomonas reinhardtii, three endogenous miRNAs responsive to sulfur deprivation (cre-miR1166.1, cre-miR1150.3, and cre-miR1158) were selected. Heat-inducible expression vectors containing the selected miRNAs were constructed and transformed into C. reinhardtii. Comparison of H2 production following heat induction in the three transgenic strains and untransformed control group identified miR1166.1 as the best candidate for H2 production regulation. Moreover, enhanced photobio-H2 production was observed with repeated induction of miR1166.1 expression. CONCLUSIONS This study is the first to identify a physiological function of endogenous miR1166.1 and to show that a natural miRNA can regulate hydrogen photoproduction in the unicellular model organism C. reinhardtii.
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Affiliation(s)
- Yuting Wang
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetic, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Xiaoshan Zhuang
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetic, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Meirong Chen
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetic, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Zhiyong Zeng
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetic, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Xiaoqi Cai
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetic, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Hui Li
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetic, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
| | - Zhangli Hu
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetic, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
- Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Science, Longhua Innovation Institute for Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060 People’s Republic of China
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Burns JA, Zhang H, Hill E, Kim E, Kerney R. Transcriptome analysis illuminates the nature of the intracellular interaction in a vertebrate-algal symbiosis. eLife 2017; 6:e22054. [PMID: 28462779 PMCID: PMC5413350 DOI: 10.7554/elife.22054] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2016] [Accepted: 03/15/2017] [Indexed: 12/19/2022] Open
Abstract
During embryonic development, cells of the green alga Oophila amblystomatis enter cells of the salamander Ambystoma maculatum forming an endosymbiosis. Here, using de novo dual-RNA seq, we compared the host salamander cells that harbored intracellular algae to those without algae and the algae inside the animal cells to those in the egg capsule. This two-by-two-way analysis revealed that intracellular algae exhibit hallmarks of cellular stress and undergo a striking metabolic shift from oxidative metabolism to fermentation. Culturing experiments with the alga showed that host glutamine may be utilized by the algal endosymbiont as a primary nitrogen source. Transcriptional changes in salamander cells suggest an innate immune response to the alga, with potential attenuation of NF-κB, and metabolic alterations indicative of modulation of insulin sensitivity. In stark contrast to its algal endosymbiont, the salamander cells did not exhibit major stress responses, suggesting that the host cell experience is neutral or beneficial.
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Affiliation(s)
- John A Burns
- Division of Invertebrate Zoology, American Museum of Natural History, New York, United States
- Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, United States
| | - Huanjia Zhang
- Department of Biology, Gettysburg College, Gettysburg, United States
| | - Elizabeth Hill
- Department of Biology, Gettysburg College, Gettysburg, United States
| | - Eunsoo Kim
- Division of Invertebrate Zoology, American Museum of Natural History, New York, United States
- Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, United States
| | - Ryan Kerney
- Department of Biology, Gettysburg College, Gettysburg, United States
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Sekoai PT, Awosusi AA, Yoro KO, Singo M, Oloye O, Ayeni AO, Bodunrin M, Daramola MO. Microbial cell immobilization in biohydrogen production: a short overview. Crit Rev Biotechnol 2017; 38:157-171. [PMID: 28391705 DOI: 10.1080/07388551.2017.1312274] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
The high dependence on fossil fuels has escalated the challenges of greenhouse gas emissions and energy security. Biohydrogen is projected as a future alternative energy as a result of its non-polluting characteristics, high energy content (122 kJ/g), and economic feasibility. However, its industrial production has been hampered by several constraints such as low process yields and the formation of biohydrogen-competing reactions. This necessitates the search for other novel strategies to overcome this problem. Cell immobilization technology has been in existence for many decades and is widely used in various processes such as wastewater treatment, food technology, and pharmaceutical industry. In recent years, this technology has caught the attention of many researchers within the biohydrogen production field owing to its merits such as enhanced process yields, reduced microbial contamination, and improved homogeneity. In addition, the use of immobilization in biohydrogen production prevents washout of microbes, stabilizes the pH of the medium, and extends microbial activity during continuous processes. In this short review, an insight into the potential of cell immobilization is presented. A few immobilization techniques such as entrapment, adsorption, encapsulation, and synthetic polymers are discussed. In addition, the effects of process conditions on the performance of immobilized microbial cells during biohydrogen production are discussed. Finally, the review concludes with suggestions on improvement of cell immobilization technologies in biohydrogen production.
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Affiliation(s)
- Patrick Thabang Sekoai
- a School of Chemical and Metallurgical Engineering, Faculty of Engineering and the Built Environment , University of the Witwatersrand , Johannesburg , South Africa
| | - Ayotunde A Awosusi
- a School of Chemical and Metallurgical Engineering, Faculty of Engineering and the Built Environment , University of the Witwatersrand , Johannesburg , South Africa
| | - Kelvin Odafe Yoro
- a School of Chemical and Metallurgical Engineering, Faculty of Engineering and the Built Environment , University of the Witwatersrand , Johannesburg , South Africa
| | - Muofhe Singo
- a School of Chemical and Metallurgical Engineering, Faculty of Engineering and the Built Environment , University of the Witwatersrand , Johannesburg , South Africa
| | - Olawale Oloye
- a School of Chemical and Metallurgical Engineering, Faculty of Engineering and the Built Environment , University of the Witwatersrand , Johannesburg , South Africa
| | - Augustine Omoniyi Ayeni
- a School of Chemical and Metallurgical Engineering, Faculty of Engineering and the Built Environment , University of the Witwatersrand , Johannesburg , South Africa.,b Department of Chemical Engineering, College of Engineering , Covenant University , Ota , Ogun State , Nigeria
| | - Michael Bodunrin
- a School of Chemical and Metallurgical Engineering, Faculty of Engineering and the Built Environment , University of the Witwatersrand , Johannesburg , South Africa.,c Department of Metallurgical and Materials Engineering , Federal university of Technology , Akure , Ondo State , Nigeria
| | - Michael Olawale Daramola
- a School of Chemical and Metallurgical Engineering, Faculty of Engineering and the Built Environment , University of the Witwatersrand , Johannesburg , South Africa
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Mark Ibekwe A, Murinda SE, Murry MA, Schwartz G, Lundquist T. Microbial community structures in high rate algae ponds for bioconversion of agricultural wastes from livestock industry for feed production. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 580:1185-1196. [PMID: 28003050 DOI: 10.1016/j.scitotenv.2016.12.076] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2016] [Revised: 12/12/2016] [Accepted: 12/12/2016] [Indexed: 05/16/2023]
Abstract
Dynamics of seasonal microbial community compositions in algae cultivation ponds are complex. However, there is very limited knowledge on bacterial communities that may play significant roles with algae in the bioconversion of manure nutrients to animal feed. In this study, water samples were collected during winter, spring, summer, and fall from the dairy lagoon effluent (DLE), high rate algae ponds (HRAP) that were fed with diluted DLE, and municipal waste water treatment plant (WWTP) effluent which was included as a comparison system for the analysis of total bacteria, Cyanobacteria, and microalgae communities using MiSeq Illumina sequencing targeting the 16S V4 rDNA region. The main objective was to examine dynamics in microbial community composition in the HRAP used for the production of algal biomass. DNA was extracted from the different sample types using three commercially available DNA extraction kits; MoBio Power water extraction kit, Zymo fungi/bacterial extraction kit, and MP Biomedicals FastDNA SPIN Kit. Permutational analysis of variance (PERMANOVA) using distance matrices on each variable showed significant differences (P=0.001) in beta-diversity based on sample source. Environmental variables such as hydraulic retention time (HRT; P<0.031), total N (P<0.002), total inorganic N (P<0.002), total P (P<0.002), alkalinity (P<0.002), pH (P<0.022), total suspended solid (TSS; P<0.003), and volatile suspended solids (VSS; P<0.002) significantly affected microbial communities in DLE, HRAP, and WWTP. Of the operational taxonomic units (OTUs) identified to phyla level, the dominant classes of bacteria identified were: Cyanobacteria, Alpha-, Beta-, Gamma-, Epsilon-, and Delta-proteobacteria, Bacteroidetes, Firmicutes, and Planctomycetes. Our data suggest that microbial communities were significantly affected in HRAP by different environmental variables, and care must be taken in extraction procedures when evaluating specific groups of microbial communities for specific functions.
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Affiliation(s)
- A Mark Ibekwe
- US Salinity Laboratory, USDA-ARS, 450 W. Big Springs Rd., Riverside, CA 92507, USA.
| | - Shelton E Murinda
- Animal and Veterinary Sciences Department, California State Polytechnic University, Pomona, CA 91768, USA
| | - Marcia A Murry
- Biological Sciences Department, California State Polytechnic University, Pomona, CA 91768, USA
| | - Gregory Schwartz
- BioResource and Agricultural Engineering Department, College of Agriculture, California Polytechnic State University, San Luis Obispo, CA, USA
| | - Trygve Lundquist
- Civil and Environmental Engineering Department, College of Engineering, California Polytechnic State University, San Luis Obispo, CA, USA
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Li L, Zhang G, Wang Q. De novo transcriptomic analysis of Chlorella sorokiniana reveals differential genes expression in photosynthetic carbon fixation and lipid production. BMC Microbiol 2016; 16:223. [PMID: 27669744 PMCID: PMC5037625 DOI: 10.1186/s12866-016-0839-8] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2015] [Accepted: 09/14/2016] [Indexed: 01/09/2023] Open
Abstract
BACKGROUND Microalgae, which can absorb carbon dioxide and then transform it into lipid, are promising candidates to produce renewable energy, especially biodiesel. The paucity of genomic information, however, limits the development of genome-based genetic modification to improve lipid production in many microalgae. Here, we describe the de novo sequencing, transcriptome assembly, annotation and differential expression analysis for Chlorella sorokiniana cultivated in different conditions to reveal the change of genes expression associated with lipid accumulation and photosynthetic carbon fixation. RESULTS Six cultivation conditions were selected to cultivate C. sorokiniana. Lipid content of C. sorokiniana under nitrogen-limited condition was 2.96 times than that under nitrogen-replete condition. When cultivated in light with nitrogen-limited supply, C. sorokiniana can use carbon dioxide to accumulate lipid. Then, transcriptome of C. sorokiniana was sequenced using Illumina paired-end sequencing technology, and 244,291,069 raw reads with length of 100 bp were produced. After preprocessed, these reads were de novo assembled into 63,811 contigs among which 23,528 contigs were found homologous sequences in public databases through Blastx. Gene expression abundance under six conditions were quantified by calculating FPKM value. Ultimately, we found 385 genes at least 2-fold up-regulated while 71 genes at least 2-fold down-regulated in nitrogen-limited condition. Also, 204 genes were at least 2-fold up-regulated in light while 638 genes at least 2-fold down-regulated. Finally, 16 genes were selected to conduct RT-qPCR and 15 genes showed the similar results as those identified by transcriptomic analysis in term of differential expression. CONCLUSIONS De novo transcriptomic analyses have generated enormous information over C. sorokiniana, revealing a broad overview of genomic information related to lipid accumulation and photosynthetic carbon fixation. The genes with expression change under different conditions are highly likely the potential targets for genetic modification to improve lipid production and CO2 fixation efficiency in oleaginous microalgae.
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Affiliation(s)
- Lin Li
- Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 XiQiDao, Tianjin Airport Economic Area, Tianjin, 300308 People’s Republic of China
| | - Guoqiang Zhang
- Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 XiQiDao, Tianjin Airport Economic Area, Tianjin, 300308 People’s Republic of China
| | - Qinhong Wang
- Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 XiQiDao, Tianjin Airport Economic Area, Tianjin, 300308 People’s Republic of China
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Lai YS, McCaw A, Ontiveros-Valencia A, Shi Y, Parameswaran P, Rittmann BE. Multiple synergistic benefits of selective fermentation of Scenedesmus biomass for fuel recovery via wet-biomass extraction. ALGAL RES 2016. [DOI: 10.1016/j.algal.2016.05.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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19
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Gao Z, Miao X, Zhang X, Wu G, Guo Y, Wang M, Li B, Li X, Gao Y, Hu S, Sun J, Cui J, Meng C, Li Y. Comparative fatty acid transcriptomic test and iTRAQ-based proteomic analysis in Haematococcus pluvialis upon salicylic acid (SA) and jasmonic acid (JA) inductions. ALGAL RES 2016. [DOI: 10.1016/j.algal.2016.05.012] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Mera R, Torres E, Abalde J. Effects of sodium sulfate on the freshwater microalga Chlamydomonas moewusii: implications for the optimization of algal culture media. JOURNAL OF PHYCOLOGY 2016; 52:75-88. [PMID: 26987090 DOI: 10.1111/jpy.12367] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2015] [Accepted: 10/20/2015] [Indexed: 05/20/2023]
Abstract
The study of the microalgal growth kinetics is an indispensable tool in all fields of phycology. Knowing the optimal nutrient concentration is an important issue that will help to develop efficient growth systems for these microorganisms. Although nitrogen and phosphorus are well studied for this purpose, sulfur seems to be less investigated. Sulfate is a primary sulfur source used by microalgae; moreover, the concentration of this compound is increasing in freshwater systems due to pollution. The aim of this study was to investigate the effects of different sodium sulfate concentrations in the culture medium on growth and growth kinetics of the freshwater microalga Chlamydomonas moewusii. Production of biomass, chl content, kinetic equations, and a mathematical model that describe the microalgal growth in relation with the concentration of sodium sulfate were obtained. The lowest concentration of sodium sulfate allowing optimal growth was 0.1 mM. Concentrations higher than 3 mM generated a toxic effect. This work demonstrates that this toxic effect was not directly due to the excess of sulfate ion but by the elevation of the ionic strength. An inhibition model was successfully used to simulate the relationship between specific growth rate and sodium sulfate in this microalga.
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Affiliation(s)
- Roi Mera
- Laboratorio de Microbiología, Facultad de Ciencias, Universidade da Coruña, Alejandro de La Sota, No. 1, La Coruña, 15008, Spain
| | - Enrique Torres
- Laboratorio de Microbiología, Facultad de Ciencias, Universidade da Coruña, Alejandro de La Sota, No. 1, La Coruña, 15008, Spain
| | - Julio Abalde
- Laboratorio de Microbiología, Facultad de Ciencias, Universidade da Coruña, Alejandro de La Sota, No. 1, La Coruña, 15008, Spain
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Yao L, Tan TW, Ng YK, Ban KHK, Shen H, Lin H, Lee YK. RNA-Seq transcriptomic analysis with Bag2D software identifies key pathways enhancing lipid yield in a high lipid-producing mutant of the non-model green alga Dunaliella tertiolecta. BIOTECHNOLOGY FOR BIOFUELS 2015; 8:191. [PMID: 26613001 PMCID: PMC4660794 DOI: 10.1186/s13068-015-0382-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Accepted: 11/13/2015] [Indexed: 05/09/2023]
Abstract
BACKGROUND For many years, increasing demands for fossil fuels have met with limited supply. As a potential substitute and renewable source of biofuel feedstock, microalgae have received significant attention. However, few of the current algal species produce high lipid yields to be commercially viable. To discover more high yielding strains, next-generation sequencing technology is used to elucidate lipid synthetic pathways and energy metabolism involved in lipid yield. When subjected to manipulation by genetic and metabolic engineering, enhancement of such pathways may further enhance lipid yield. RESULTS In this study, transcriptome profiling of a random insertional mutant with enhanced lipid production generated from a non-model marine microalga Dunaliella tertiolecta is presented. D9 mutant has a lipid yield that is 2- to 4-fold higher than that of wild type. Using novel Bag2D-workflow scripts developed and reported here, the non-redundant transcripts from de novo assembly were annotated based on the best hits in five model microalgae, namely Chlamydomonas reinhardtii, Coccomyxa subellipsoidea C-169, Ostreococcus lucimarinus, Volvox carteri, Chlorella variabilis NC64A and a high plant species Arabidopsis thaliana. The assembled contigs (~181 Mb) includes 481,381 contigs, covering 10,185 genes. Pathway analysis showed that a pathway from inositol phosphate metabolism to fatty acid biosynthesis is the most significantly correlated with higher lipid yield in this mutant. CONCLUSIONS Herein, we described a pipeline to analyze RNA-Seq data without pre-existing transcriptomic information. The draft transcriptome of D. tertiolecta was constructed and annotated, which offered useful information for characterizing high lipid-producing mutants. D. tertiolecta mutant was generated with an enhanced photosynthetic efficiency and lipid production. RNA-Seq data of the mutant and wild type were compared, providing biological insights into the expression patterns of contigs associated with energy metabolism and carbon flow pathways. Comparison of D. tertiolecta genes with homologs of five other green algae and a model high plant species can facilitate the annotation of D. tertiolecta and lead to a more complete annotation of its sequence database, thus laying the groundwork for optimization of lipid production pathways based on genetic manipulation.
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Affiliation(s)
- Lina Yao
- />Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
| | - Tin Wee Tan
- />Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
| | - Yi-Kai Ng
- />Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
| | - Kenneth Hon Kim Ban
- />Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
- />Institute of Molecular and Cell Biology, A*STAR, Singapore, Singapore
| | - Hui Shen
- />Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
| | - Huixin Lin
- />Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
| | - Yuan Kun Lee
- />Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
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Gao Z, Li Y, Wu G, Li G, Sun H, Deng S, Shen Y, Chen G, Zhang R, Meng C, Zhang X. Transcriptome Analysis in Haematococcus pluvialis: Astaxanthin Induction by Salicylic Acid (SA) and Jasmonic Acid (JA). PLoS One 2015; 10:e0140609. [PMID: 26484871 PMCID: PMC4979887 DOI: 10.1371/journal.pone.0140609] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2015] [Accepted: 09/27/2015] [Indexed: 11/30/2022] Open
Abstract
Haematococcus pluvialis is an astaxanthin-rich microalga that can increase its astaxanthin production by salicylic acid (SA) or jasmonic acid (JA) induction. The genetic transcriptome details of astaxanthin biosynthesis were analyzed by exposing the algal cells to 25 mg/L of SA and JA for 1, 6 and 24 hours, plus to the control (no stress). Based on the RNA-seq analysis, 56,077 unigenes (51.7%) were identified with functions in response to the hormone stress. The top five identified subcategories were cell, cellular process, intracellular, catalytic activity and cytoplasm, which possessed 5600 (~9.99%), 5302 (~9.45%), 5242 (~9.35%), 4407 (~7.86%) and 4195 (~7.48%) unigenes, respectively. Furthermore, 59 unigenes were identified and assigned to 26 putative transcription factors (TFs), including 12 plant-specific TFs. They were likely associated with astaxanthin biosynthesis in Haematococcus upon SA and JA stress. In comparison, the up-regulation of differential expressed genes occurred much earlier, with higher transcript levels in the JA treatment (about 6 h later) than in the SA treatment (beyond 24 h). These results provide valuable information for directing metabolic engineering efforts to improve astaxanthin biosynthesis in H. pluvialis.
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Affiliation(s)
- Zhengquan Gao
- School of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China
| | - Yan Li
- College of Marine and Environmental Sciences, James Cook University, Douglas, 4811, Australia
- School of Food and Agriculture Sciences, University of Queensland, St. Lucia, 4072, Australia
| | - Guanxun Wu
- School of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China
| | - Guoqiang Li
- School of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China
| | - Haifeng Sun
- School of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China
| | - Suzhen Deng
- School of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China
| | - Yicheng Shen
- School of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China
| | - Guoqiang Chen
- School of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China
| | - Ruihao Zhang
- School of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China
| | - Chunxiao Meng
- School of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China
- * E-mail: (CXM); (XWZ)
| | - Xiaowen Zhang
- Yellow Sea Fishery Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, P.R. China
- * E-mail: (CXM); (XWZ)
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23
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Guarnieri MT, Pienkos PT. Algal omics: unlocking bioproduct diversity in algae cell factories. PHOTOSYNTHESIS RESEARCH 2015; 123:255-63. [PMID: 24627032 DOI: 10.1007/s11120-014-9989-4] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Accepted: 02/17/2014] [Indexed: 05/10/2023]
Abstract
Rapid advances in "omic" technologies are helping to unlock the full potential of microalgae as multi-use feedstocks, with utility in an array of industrial biotechnology, biofuel, and biomedical applications. In turn, algae are emerging as highly attractive candidates for development as microbial cell factories. In this review, we examine the wide array of potential algal bioproducts, with a focus upon the role of omic technologies in driving bioproduct discovery and optimization in microalgal systems.
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Affiliation(s)
- Michael T Guarnieri
- National Bioenergy Center, National Renewable Energy Laboratory, 15013 Denver West Parkway, MS 3323, Golden, CO, 80401, USA,
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24
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Li Q, Liu J, Zhang L, Liu Q. De novo transcriptome analysis of an aerial microalga Trentepohlia jolithus: pathway description and gene discovery for carbon fixation and carotenoid biosynthesis. PLoS One 2014; 9:e108488. [PMID: 25254555 PMCID: PMC4177907 DOI: 10.1371/journal.pone.0108488] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2014] [Accepted: 08/30/2014] [Indexed: 11/26/2022] Open
Abstract
Background Algae in the order Trentepohliales have a broad geographic distribution and are generally characterized by the presence of abundant β-carotene. The many monographs published to date have mainly focused on their morphology, taxonomy, phylogeny, distribution and reproduction; molecular studies of this order are still rare. High-throughput RNA sequencing (RNA-Seq) technology provides a powerful and efficient method for transcript analysis and gene discovery in Trentepohlia jolithus. Methods/Principal Findings Illumina HiSeq 2000 sequencing generated 55,007,830 Illumina PE raw reads, which were assembled into 41,328 assembled unigenes. Based on NR annotation, 53.28% of the unigenes (22,018) could be assigned to gene ontology classes with 54 subcategories and 161,451 functional terms. A total of 26,217 (63.44%) assembled unigenes were mapped to 128 KEGG pathways. Furthermore, a set of 5,798 SSRs in 5,206 unigenes and 131,478 putative SNPs were identified. Moreover, the fact that all of the C4 photosynthesis genes exist in T. jolithus suggests a complex carbon acquisition and fixation system. Similarities and differences between T. jolithus and other algae in carotenoid biosynthesis are also described in depth. Conclusions/Significance This is the first broad transcriptome survey for T. jolithus, increasing the amount of molecular data available for the class Ulvophyceae. As well as providing resources for functional genomics studies, the functional genes and putative pathways identified here will contribute to a better understanding of carbon fixation and fatty acid and carotenoid biosynthesis in T. jolithus.
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Affiliation(s)
- Qianqian Li
- Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of the Chinese Academy of Sciences, Beijing, China
| | - Jianguo Liu
- Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- * E-mail:
| | - Litao Zhang
- Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
| | - Qian Liu
- Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
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25
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Wei H, Fu Y, Magnusson L, Baker JO, Maness PC, Xu Q, Yang S, Bowersox A, Bogorad I, Wang W, Tucker MP, Himmel ME, Ding SY. Comparison of transcriptional profiles of Clostridium thermocellum grown on cellobiose and pretreated yellow poplar using RNA-Seq. Front Microbiol 2014; 5:142. [PMID: 24782837 PMCID: PMC3990059 DOI: 10.3389/fmicb.2014.00142] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2013] [Accepted: 03/19/2014] [Indexed: 01/01/2023] Open
Abstract
The anaerobic, thermophilic bacterium, Clostridium thermocellum, secretes multi-protein enzyme complexes, termed cellulosomes, which synergistically interact with the microbial cell surface and efficiently disassemble plant cell wall biomass. C. thermocellum has also been considered a potential consolidated bioprocessing (CBP) organism due to its ability to produce the biofuel products, hydrogen, and ethanol. We found that C. thermocellum fermentation of pretreated yellow poplar (PYP) produced 30 and 39% of ethanol and hydrogen product concentrations, respectively, compared to fermentation of cellobiose. RNA-seq was used to analyze the transcriptional profiles of these cells. The PYP-grown cells taken for analysis at the late stationary phase showed 1211 genes up-regulated and 314 down-regulated by more than two-fold compared to the cellobiose-grown cells. These affected genes cover a broad spectrum of specific functional categories. The transcriptional analysis was further validated by sub-proteomics data taken from the literature; as well as by quantitative reverse transcription-PCR (qRT-PCR) analyses of selected genes. Specifically, 47 cellulosomal protein-encoding genes, genes for 4 pairs of SigI-RsgI for polysaccharide sensing, 7 cellodextrin ABC transporter genes, and a set of NAD(P)H hydogenase and alcohol dehydrogenase genes were up-regulated for cells growing on PYP compared to cellobiose. These genes could be potential candidates for future studies aimed at gaining insight into the regulatory mechanism of this organism as well as for improvement of C. thermocellum in its role as a CBP organism.
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Affiliation(s)
- Hui Wei
- Biosciences Center, National Renewable Energy Laboratory Golden, CO, USA
| | - Yan Fu
- Center for Plant Genomics, Iowa State University Ames, IA, USA
| | - Lauren Magnusson
- Biosciences Center, National Renewable Energy Laboratory Golden, CO, USA
| | - John O Baker
- Biosciences Center, National Renewable Energy Laboratory Golden, CO, USA
| | - Pin-Ching Maness
- Biosciences Center, National Renewable Energy Laboratory Golden, CO, USA
| | - Qi Xu
- Biosciences Center, National Renewable Energy Laboratory Golden, CO, USA
| | - Shihui Yang
- National Bioenergy Center, National Renewable Energy Laboratory Golden, CO, USA
| | - Andrew Bowersox
- Biosciences Center, National Renewable Energy Laboratory Golden, CO, USA ; National Bioenergy Center, National Renewable Energy Laboratory Golden, CO, USA
| | - Igor Bogorad
- Biosciences Center, National Renewable Energy Laboratory Golden, CO, USA
| | - Wei Wang
- Biosciences Center, National Renewable Energy Laboratory Golden, CO, USA
| | - Melvin P Tucker
- National Bioenergy Center, National Renewable Energy Laboratory Golden, CO, USA
| | - Michael E Himmel
- Biosciences Center, National Renewable Energy Laboratory Golden, CO, USA
| | - Shi-You Ding
- Biosciences Center, National Renewable Energy Laboratory Golden, CO, USA
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