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For: González-Ramos D, van den Broek M, van Maris AJA, Pronk JT, Daran JMG. Genome-scale analyses of butanol tolerance in Saccharomyces cerevisiae reveal an essential role of protein degradation. Biotechnol Biofuels 2013;6:48. [PMID: 23552365 PMCID: PMC3621596 DOI: 10.1186/1754-6834-6-48] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2013] [Accepted: 03/22/2013] [Indexed: 05/04/2023]
Number Cited by Other Article(s)
1
Azambuja SPH, de Mélo AHF, Bertozzi BG, Inoue HP, Egawa VY, Rosa CA, Rocha LO, Teixeira GS, Goldbeck R. Performance of Saccharomyces cerevisiae strains against the application of adaptive laboratory evolution strategies for butanol tolerance. Food Res Int 2024;190:114637. [PMID: 38945626 DOI: 10.1016/j.foodres.2024.114637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 06/08/2024] [Accepted: 06/09/2024] [Indexed: 07/02/2024]
2
Anand R, Kashif M, Pandit A, Babu R, Singh AP. Reprogramming in Candida albicans Gene Expression Network under Butanol Stress Abrogates Hyphal Development. Int J Mol Sci 2023;24:17227. [PMID: 38139056 PMCID: PMC10743114 DOI: 10.3390/ijms242417227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 11/02/2023] [Accepted: 11/03/2023] [Indexed: 12/24/2023]  Open
3
Lee YJ, Hoang Nguyen Tran P, Ko JK, Gong G, Um Y, Han SO, Lee SM. Glucose/Xylose Co-Fermenting Saccharomyces cerevisiae Increases the Production of Acetyl-CoA Derived n-Butanol From Lignocellulosic Biomass. Front Bioeng Biotechnol 2022;10:826787. [PMID: 35252135 PMCID: PMC8889018 DOI: 10.3389/fbioe.2022.826787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 01/27/2022] [Indexed: 11/13/2022]  Open
4
Liu HL, Wang CHT, Chiang EPI, Huang CC, Li WH. Tryptophan plays an important role in yeast's tolerance to isobutanol. BIOTECHNOLOGY FOR BIOFUELS 2021;14:200. [PMID: 34645498 PMCID: PMC8513309 DOI: 10.1186/s13068-021-02048-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Accepted: 09/27/2021] [Indexed: 05/11/2023]
5
Co-Production of Isobutanol and Ethanol from Prairie Grain Starch Using Engineered Saccharomyces cerevisiae. FERMENTATION 2021. [DOI: 10.3390/fermentation7030150] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
6
Mavrommati M, Daskalaki A, Papanikolaou S, Aggelis G. Adaptive laboratory evolution principles and applications in industrial biotechnology. Biotechnol Adv 2021;54:107795. [PMID: 34246744 DOI: 10.1016/j.biotechadv.2021.107795] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Revised: 06/11/2021] [Accepted: 07/05/2021] [Indexed: 12/20/2022]
7
Pandita M, Shoket H, Rakewal A, Wazir S, Kumar P, Kumar R, Bairwa NK. Genetic interaction between glyoxylate pathway regulator UCC1 and La-motif-encoding SRO9 regulates stress response and growth rate improvement in Saccharomyces cerevisiae. J Biochem Mol Toxicol 2021;35:e22781. [PMID: 33797855 DOI: 10.1002/jbt.22781] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Revised: 02/12/2021] [Accepted: 03/22/2021] [Indexed: 11/11/2022]
8
Schalck T, den Bergh BV, Michiels J. Increasing Solvent Tolerance to Improve Microbial Production of Alcohols, Terpenoids and Aromatics. Microorganisms 2021;9:249. [PMID: 33530454 PMCID: PMC7912173 DOI: 10.3390/microorganisms9020249] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Revised: 01/14/2021] [Accepted: 01/20/2021] [Indexed: 12/16/2022]  Open
9
Liang L, Liu R, Freed EF, Eckert CA, Gill RT. Transcriptional Regulatory Networks Involved in C3-C4 Alcohol Stress Response and Tolerance in Yeast. ACS Synth Biol 2021;10:19-28. [PMID: 33356165 DOI: 10.1021/acssynbio.0c00253] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
10
How to outwit nature: Omics insight into butanol tolerance. Biotechnol Adv 2020;46:107658. [PMID: 33220435 DOI: 10.1016/j.biotechadv.2020.107658] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 11/10/2020] [Accepted: 11/13/2020] [Indexed: 12/16/2022]
11
Siripong W, Angela C, Tanapongpipat S, Runguphan W. Metabolic engineering of Pichia pastoris for production of isopentanol (3-Methyl-1-butanol). Enzyme Microb Technol 2020;138:109557. [PMID: 32527534 DOI: 10.1016/j.enzmictec.2020.109557] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 03/24/2020] [Accepted: 03/26/2020] [Indexed: 12/21/2022]
12
Rpn4 and proteasome-mediated yeast resistance to ethanol includes regulation of autophagy. Appl Microbiol Biotechnol 2020;104:4027-4041. [PMID: 32157425 DOI: 10.1007/s00253-020-10518-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Revised: 02/15/2020] [Accepted: 03/01/2020] [Indexed: 12/18/2022]
13
Azambuja SPH, Goldbeck R. Butanol production by Saccharomyces cerevisiae: perspectives, strategies and challenges. World J Microbiol Biotechnol 2020;36:48. [PMID: 32152786 DOI: 10.1007/s11274-020-02828-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Accepted: 03/03/2020] [Indexed: 12/12/2022]
14
Critical Roles of the Pentose Phosphate Pathway and GLN3 in Isobutanol-Specific Tolerance in Yeast. Cell Syst 2019;9:534-547.e5. [DOI: 10.1016/j.cels.2019.10.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2018] [Revised: 08/23/2019] [Accepted: 10/18/2019] [Indexed: 02/01/2023]
15
Nakatsukasa K, Kawarasaki T, Moriyama A. Heterologous expression and functional analysis of the F-box protein Ucc1 from other yeast species in Saccharomyces cerevisiae. J Biosci Bioeng 2019;128:704-709. [DOI: 10.1016/j.jbiosc.2019.06.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2018] [Revised: 05/31/2019] [Accepted: 06/05/2019] [Indexed: 11/17/2022]
16
Bacteria for Butanol Production: Bottlenecks, Achievements and Prospects. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2019. [DOI: 10.22207/jpam.13.3.13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
17
Zhou J, Lu X, Tian B, Wang C, Shi H, Luo C, Zhu X, Yuan X, Li X. Knockout of acetoacetate degradation pathway gene atoDA enhances the toxicity tolerance of Escherichia coli to isopropanol and acetone. 3 Biotech 2019;9:343. [PMID: 31497461 DOI: 10.1007/s13205-019-1867-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Accepted: 08/12/2019] [Indexed: 01/13/2023]  Open
18
Gorter de Vries AR, Koster CC, Weening SM, Luttik MAH, Kuijpers NGA, Geertman JMA, Pronk JT, Daran JMG. Phenotype-Independent Isolation of Interspecies Saccharomyces Hybrids by Dual-Dye Fluorescent Staining and Fluorescence-Activated Cell Sorting. Front Microbiol 2019;10:871. [PMID: 31105669 PMCID: PMC6498416 DOI: 10.3389/fmicb.2019.00871] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Accepted: 04/04/2019] [Indexed: 11/13/2022]  Open
19
Genotype-by-Environment-by-Environment Interactions in the Saccharomyces cerevisiae Transcriptomic Response to Alcohols and Anaerobiosis. G3-GENES GENOMES GENETICS 2018;8:3881-3890. [PMID: 30301737 PMCID: PMC6288825 DOI: 10.1534/g3.118.200677] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
20
Diderich JA, Weening SM, van den Broek M, Pronk JT, Daran JMG. Selection of Pof-Saccharomyces eubayanus Variants for the Construction of S. cerevisiae × S. eubayanus Hybrids With Reduced 4-Vinyl Guaiacol Formation. Front Microbiol 2018;9:1640. [PMID: 30100898 PMCID: PMC6074607 DOI: 10.3389/fmicb.2018.01640] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Accepted: 07/02/2018] [Indexed: 01/27/2023]  Open
21
Davis López SA, Griffith DA, Choi B, Cate JHD, Tullman-Ercek D. Evolutionary engineering improves tolerance for medium-chain alcohols in Saccharomyces cerevisiae. BIOTECHNOLOGY FOR BIOFUELS 2018;11:90. [PMID: 29619086 PMCID: PMC5880003 DOI: 10.1186/s13068-018-1089-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Accepted: 03/21/2018] [Indexed: 06/08/2023]
22
Under pressure: evolutionary engineering of yeast strains for improved performance in fuels and chemicals production. Curr Opin Biotechnol 2018;50:47-56. [DOI: 10.1016/j.copbio.2017.10.011] [Citation(s) in RCA: 109] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2017] [Revised: 10/31/2017] [Accepted: 10/31/2017] [Indexed: 02/01/2023]
23
Shi S, Choi YW, Zhao H, Tan MH, Ang EL. Discovery and engineering of a 1-butanol biosensor in Saccharomyces cerevisiae. BIORESOURCE TECHNOLOGY 2017;245:1343-1351. [PMID: 28712783 DOI: 10.1016/j.biortech.2017.06.114] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Revised: 06/20/2017] [Accepted: 06/21/2017] [Indexed: 06/07/2023]
24
Brickwedde A, van den Broek M, Geertman JMA, Magalhães F, Kuijpers NGA, Gibson B, Pronk JT, Daran JMG. Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Saccharomyces pastorianus Lager Brewing Yeast. Front Microbiol 2017;8:1690. [PMID: 28943864 PMCID: PMC5596070 DOI: 10.3389/fmicb.2017.01690] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 08/21/2017] [Indexed: 01/01/2023]  Open
25
Horinouchi T, Sakai A, Kotani H, Tanabe K, Furusawa C. Improvement of isopropanol tolerance of Escherichia coli using adaptive laboratory evolution and omics technologies. J Biotechnol 2017. [PMID: 28645581 DOI: 10.1016/j.jbiotec.2017.06.408] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
26
Ho PW, Swinnen S, Duitama J, Nevoigt E. The sole introduction of two single-point mutations establishes glycerol utilization in Saccharomyces cerevisiae CEN.PK derivatives. BIOTECHNOLOGY FOR BIOFUELS 2017;10:10. [PMID: 28053667 PMCID: PMC5209837 DOI: 10.1186/s13068-016-0696-6] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/08/2016] [Accepted: 12/23/2016] [Indexed: 06/06/2023]
27
Pereira JPC, Verheijen PJT, Straathof AJJ. Growth inhibition of S. cerevisiae, B. subtilis, and E. coli by lignocellulosic and fermentation products. Appl Microbiol Biotechnol 2016;100:9069-9080. [PMID: 27262569 PMCID: PMC5056951 DOI: 10.1007/s00253-016-7642-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Revised: 05/08/2016] [Accepted: 05/18/2016] [Indexed: 12/27/2022]
28
Identification of gene knockdown targets conferring enhanced isobutanol and 1-butanol tolerance to Saccharomyces cerevisiae using a tunable RNAi screening approach. Appl Microbiol Biotechnol 2016;100:10005-10018. [DOI: 10.1007/s00253-016-7791-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Revised: 07/25/2016] [Accepted: 08/03/2016] [Indexed: 10/21/2022]
29
Fletcher E, Pilizota T, Davies PR, McVey A, French CE. Characterization of the effects of n-butanol on the cell envelope of E. coli. Appl Microbiol Biotechnol 2016;100:9653-9659. [DOI: 10.1007/s00253-016-7771-6] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2016] [Accepted: 08/01/2016] [Indexed: 01/08/2023]
30
Genetic determinants for enhanced glycerol growth of Saccharomyces cerevisiae. Metab Eng 2016;36:68-79. [DOI: 10.1016/j.ymben.2016.03.003] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Revised: 02/12/2016] [Accepted: 03/10/2016] [Indexed: 11/21/2022]
31
Freedman BG, Zu TNK, Wallace RS, Senger RS. Raman spectroscopy detects phenotypic differences among Escherichia coli enriched for 1‐butanol tolerance using a metagenomic DNA library. Biotechnol J 2016;11:877-89. [DOI: 10.1002/biot.201500144] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2015] [Revised: 10/22/2015] [Accepted: 01/26/2016] [Indexed: 11/11/2022]
32
van Rossum HM, Kozak BU, Niemeijer MS, Duine HJ, Luttik MAH, Boer VM, Kötter P, Daran JMG, van Maris AJA, Pronk JT. Alternative reactions at the interface of glycolysis and citric acid cycle in Saccharomyces cerevisiae. FEMS Yeast Res 2016;16:fow017. [PMID: 26895788 PMCID: PMC5815053 DOI: 10.1093/femsyr/fow017] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/16/2016] [Indexed: 11/14/2022]  Open
33
Kozak BU, van Rossum HM, Niemeijer MS, van Dijk M, Benjamin K, Wu L, Daran JMG, Pronk JT, van Maris AJA. Replacement of the initial steps of ethanol metabolism in Saccharomyces cerevisiae by ATP-independent acetylating acetaldehyde dehydrogenase. FEMS Yeast Res 2016;16:fow006. [PMID: 26818854 PMCID: PMC5815134 DOI: 10.1093/femsyr/fow006] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2015] [Accepted: 01/25/2016] [Indexed: 11/17/2022]  Open
34
González-Ramos D, Gorter de Vries AR, Grijseels SS, van Berkum MC, Swinnen S, van den Broek M, Nevoigt E, Daran JMG, Pronk JT, van Maris AJA. A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations. BIOTECHNOLOGY FOR BIOFUELS 2016;9:173. [PMID: 27525042 PMCID: PMC4983051 DOI: 10.1186/s13068-016-0583-1] [Citation(s) in RCA: 85] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Accepted: 07/27/2016] [Indexed: 05/22/2023]
35
Solis-Escalante D, van den Broek M, Kuijpers NGA, Pronk JT, Boles E, Daran JM, Daran-Lapujade P. The genome sequence of the popular hexose-transport-deficient Saccharomyces cerevisiae strain EBY.VW4000 reveals LoxP/Cre-induced translocations and gene loss. FEMS Yeast Res 2015;15:fou004. [PMID: 25673752 DOI: 10.1093/femsyr/fou004] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
36
Grineva EN, Leinsoo AT, Spasskaya DS, Karpov DS, Karpov VL. Functional analysis of Rpn4-like proteins from Komagataella (Pichia) pastoris and Yarrowia lipolytica on a genetic background of Saccharomyces cerevisiae. APPL BIOCHEM MICRO+ 2015. [DOI: 10.1134/s0003683815070029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
37
Metabolic engineering of Saccharomyces cerevisiae for production of butanol isomers. Curr Opin Biotechnol 2015;33:1-7. [DOI: 10.1016/j.copbio.2014.09.004] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2014] [Revised: 09/09/2014] [Accepted: 09/17/2014] [Indexed: 11/22/2022]
38
Yeast toxicogenomics: lessons from a eukaryotic cell model and cell factory. Curr Opin Biotechnol 2015;33:183-91. [DOI: 10.1016/j.copbio.2015.03.001] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2014] [Revised: 02/16/2015] [Accepted: 03/05/2015] [Indexed: 12/21/2022]
39
The Ubiquitin Ligase SCF(Ucc1) Acts as a Metabolic Switch for the Glyoxylate Cycle. Mol Cell 2015;59:22-34. [PMID: 25982115 DOI: 10.1016/j.molcel.2015.04.013] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Revised: 03/03/2015] [Accepted: 04/07/2015] [Indexed: 01/14/2023]
40
Zhang Y, Liu ZL, Song M. ChiNet uncovers rewired transcription subnetworks in tolerant yeast for advanced biofuels conversion. Nucleic Acids Res 2015;43:4393-407. [PMID: 25897127 PMCID: PMC4482087 DOI: 10.1093/nar/gkv358] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2014] [Accepted: 04/06/2015] [Indexed: 12/14/2022]  Open
41
Bachmann H, Pronk JT, Kleerebezem M, Teusink B. Evolutionary engineering to enhance starter culture performance in food fermentations. Curr Opin Biotechnol 2015;32:1-7. [DOI: 10.1016/j.copbio.2014.09.003] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2014] [Revised: 09/05/2014] [Accepted: 09/12/2014] [Indexed: 01/08/2023]
42
Becerra M, Cerdán ME, González-Siso MI. Biobutanol from cheese whey. Microb Cell Fact 2015;14:27. [PMID: 25889728 PMCID: PMC4404668 DOI: 10.1186/s12934-015-0200-1] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Accepted: 01/26/2015] [Indexed: 11/17/2022]  Open
43
Hebly M, Brickwedde A, Bolat I, Driessen MRM, de Hulster EAF, van den Broek M, Pronk JT, Geertman JM, Daran JM, Daran-Lapujade P. S. cerevisiae × S. eubayanus interspecific hybrid, the best of both worlds and beyond. FEMS Yeast Res 2015;15:fov005. [PMID: 25743788 DOI: 10.1093/femsyr/fov005] [Citation(s) in RCA: 79] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/27/2015] [Indexed: 12/16/2022]  Open
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Mans R, van Rossum HM, Wijsman M, Backx A, Kuijpers NGA, van den Broek M, Daran-Lapujade P, Pronk JT, van Maris AJA, Daran JMG. CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae. FEMS Yeast Res 2015;15:fov004. [PMID: 25743786 PMCID: PMC4399441 DOI: 10.1093/femsyr/fov004] [Citation(s) in RCA: 299] [Impact Index Per Article: 33.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
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Shen H, McHale CM, Smith MT, Zhang L. Functional genomic screening approaches in mechanistic toxicology and potential future applications of CRISPR-Cas9. MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH 2015;764:31-42. [PMID: 26041264 DOI: 10.1016/j.mrrev.2015.01.002] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Revised: 01/14/2015] [Accepted: 01/16/2015] [Indexed: 01/25/2023]
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Tsai CS, Kwak S, Turner TL, Jin YS. Yeast synthetic biology toolbox and applications for biofuel production. FEMS Yeast Res 2015;15:1-15. [PMID: 25195615 DOI: 10.1111/1567-1364.12206] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Revised: 06/16/2014] [Accepted: 08/31/2014] [Indexed: 01/04/2023]  Open
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Jensen MK, Keasling JD. Recent applications of synthetic biology tools for yeast metabolic engineering. FEMS Yeast Res 2015;15:1-10. [PMID: 25041737 DOI: 10.1111/1567-1364.12185] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Revised: 06/04/2014] [Accepted: 07/10/2014] [Indexed: 11/29/2022]  Open
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Torto-Alalibo T, Purwantini E, Lomax J, Setubal JC, Mukhopadhyay B, Tyler BM. Genetic resources for advanced biofuel production described with the Gene Ontology. Front Microbiol 2014;5:528. [PMID: 25346727 PMCID: PMC4193338 DOI: 10.3389/fmicb.2014.00528] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2014] [Accepted: 09/22/2014] [Indexed: 12/12/2022]  Open
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Microbial tolerance engineering toward biochemical production: from lignocellulose to products. Curr Opin Biotechnol 2014;29:99-106. [DOI: 10.1016/j.copbio.2014.03.005] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2013] [Revised: 03/01/2014] [Accepted: 03/18/2014] [Indexed: 11/19/2022]
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Zaki AM, Wimalasena TT, Greetham D. Phenotypic characterisation of Saccharomyces spp. for tolerance to 1-butanol. J Ind Microbiol Biotechnol 2014;41:1627-36. [PMID: 25242291 DOI: 10.1007/s10295-014-1511-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Accepted: 09/12/2014] [Indexed: 11/29/2022]
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