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Dinius A, Müller H, Kellhammer D, Deffur C, Schmideder S, Hammel JU, Krull R, Briesen H. 3D imaging and analysis to unveil the impact of microparticles on the pellet morphology of filamentous fungi. Biotechnol Bioeng 2024. [PMID: 38943490 DOI: 10.1002/bit.28788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 05/17/2024] [Accepted: 06/15/2024] [Indexed: 07/01/2024]
Abstract
Controlling the morphology of filamentous fungi is crucial to improve the performance of fungal bioprocesses. Microparticle-enhanced cultivation (MPEC) increases productivity, most likely by changing the fungal morphology. However, due to a lack of appropriate methods, the exact impact of the added microparticles on the structural development of fungal pellets is mostly unexplored. In this study synchrotron radiation-based microcomputed tomography and three-dimensional (3D) image analysis were applied to unveil the detailed 3D incorporation of glass microparticles in nondestructed pellets of Aspergillus niger from MPEC. The developed method enabled the 3D analysis based on 375 pellets from various MPEC experiments. The total and locally resolved volume fractions of glass microparticles and hyphae were quantified for the first time. At increasing microparticle concentrations in the culture medium, pellets with lower hyphal fraction were obtained. However, the total volume of incorporated glass microparticles within the pellets did not necessarily increase. Furthermore, larger microparticles were less effective than smaller ones in reducing pellet density. However, the total volume of incorporated glass was larger for large microparticles. In addition, analysis of MPEC pellets from different times of cultivation indicated that spore agglomeration is decisive for the development of MPEC pellets. The developed 3D morphometric analysis method and the presented results will promote the general understanding and further development of MPEC for industrial application.
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Affiliation(s)
- Anna Dinius
- Institute of Biochemical Engineering, Technische Universität Braunschweig, Braunschweig, Germany
- Center of Pharmaceutical Engineering, Technische Universität Braunschweig, Braunschweig, Germany
| | - Henri Müller
- School of Life Sciences, Process Systems Engineering, Technical University of Munich, Freising, Germany
| | - Diana Kellhammer
- School of Life Sciences, Process Systems Engineering, Technical University of Munich, Freising, Germany
| | - Charlotte Deffur
- School of Life Sciences, Process Systems Engineering, Technical University of Munich, Freising, Germany
| | - Stefan Schmideder
- School of Life Sciences, Process Systems Engineering, Technical University of Munich, Freising, Germany
| | - Jörg U Hammel
- Helmholtz-Zentrum hereon, Institute of Materials Physics, Geesthacht, Germany
| | - Rainer Krull
- Institute of Biochemical Engineering, Technische Universität Braunschweig, Braunschweig, Germany
- Center of Pharmaceutical Engineering, Technische Universität Braunschweig, Braunschweig, Germany
| | - Heiko Briesen
- School of Life Sciences, Process Systems Engineering, Technical University of Munich, Freising, Germany
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2
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Müller H, Deffur C, Schmideder S, Barthel L, Friedrich T, Mirlach L, Hammel JU, Meyer V, Briesen H. Synchrotron radiation-based microcomputed tomography for three-dimensional growth analysis of Aspergillus niger pellets. Biotechnol Bioeng 2023; 120:3244-3260. [PMID: 37475650 DOI: 10.1002/bit.28506] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 05/05/2023] [Accepted: 07/11/2023] [Indexed: 07/22/2023]
Abstract
Filamentous fungi produce a wide range of relevant biotechnological compounds. The close relationship between fungal morphology and productivity has led to a variety of analytical methods to quantify their macromorphology. Nevertheless, only a µ-computed tomography (µ-CT) based method allows a detailed analysis of the 3D micromorphology of fungal pellets. However, the low sample throughput of a laboratory µ-CT limits the tracking of the micromorphological evolution of a statistically representative number of submerged cultivated fungal pellets over time. To meet this challenge, we applied synchrotron radiation-based X-ray microtomography at the Deutsches Elektronen-Synchrotron [German Electron Synchrotron Research Center], resulting in 19,940 3D analyzed individual fungal pellets that were obtained from 26 sampling points during a 48 h Aspergillus niger submerged batch cultivation. For each of the pellets, we were able to determine micromorphological properties such as number and density of spores, tips, branching points, and hyphae. The computed data allowed us to monitor the growth of submerged cultivated fungal pellets in highly resolved 3D for the first time. The generated morphological database from synchrotron measurements can be used to understand, describe, and model the growth of filamentous fungal cultivations.
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Affiliation(s)
- Henri Müller
- School of Life Sciences Weihenstephan, Chair of Process Systems Engineering, Technical University of Munich, Freising, Germany
| | - Charlotte Deffur
- School of Life Sciences Weihenstephan, Chair of Process Systems Engineering, Technical University of Munich, Freising, Germany
| | - Stefan Schmideder
- School of Life Sciences Weihenstephan, Chair of Process Systems Engineering, Technical University of Munich, Freising, Germany
| | - Lars Barthel
- Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany
| | - Tiaan Friedrich
- School of Life Sciences Weihenstephan, Chair of Process Systems Engineering, Technical University of Munich, Freising, Germany
| | - Lukas Mirlach
- School of Life Sciences Weihenstephan, Chair of Process Systems Engineering, Technical University of Munich, Freising, Germany
| | - Jörg U Hammel
- Helmholtz-Zentrum hereon, Institute of Materials Physics, Geesthacht, Germany
| | - Vera Meyer
- Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany
| | - Heiko Briesen
- School of Life Sciences Weihenstephan, Chair of Process Systems Engineering, Technical University of Munich, Freising, Germany
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3
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Wang D, Guan F, Feng C, Mathivanan K, Zhang R, Sand W. Review on Microbially Influenced Concrete Corrosion. Microorganisms 2023; 11:2076. [PMID: 37630635 PMCID: PMC10458460 DOI: 10.3390/microorganisms11082076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 08/07/2023] [Accepted: 08/10/2023] [Indexed: 08/27/2023] Open
Abstract
Microbially influenced concrete corrosion (MICC) causes substantial financial losses to modern societies. Concrete corrosion with various environmental factors has been studied extensively over several decades. With the enhancement of public awareness on the environmental and economic impacts of microbial corrosion, MICC draws increasingly public attention. In this review, the roles of various microbial communities on MICC and corresponding protective measures against MICC are described. Also, the current status and research methodology of MICC are discussed. Thus, this review aims at providing insight into MICC and its mechanisms as well as the development of protection possibilities.
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Affiliation(s)
- Dongsheng Wang
- Key Laboratory of Marine Environmental Corrosion and Bio-Fouling, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; (D.W.); (F.G.); (K.M.)
- School of Civil Engineering, Qingdao University of Technology, Qingdao 266033, China;
| | - Fang Guan
- Key Laboratory of Marine Environmental Corrosion and Bio-Fouling, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; (D.W.); (F.G.); (K.M.)
- Guangxi Key Laboratory of Marine Environmental Science, Institute of Marine Corrosion Protection, Guangxi Academy of Sciences, Nanning 530007, China
| | - Chao Feng
- School of Civil Engineering, Qingdao University of Technology, Qingdao 266033, China;
| | - Krishnamurthy Mathivanan
- Key Laboratory of Marine Environmental Corrosion and Bio-Fouling, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; (D.W.); (F.G.); (K.M.)
| | - Ruiyong Zhang
- Key Laboratory of Marine Environmental Corrosion and Bio-Fouling, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; (D.W.); (F.G.); (K.M.)
- Guangxi Key Laboratory of Marine Environmental Science, Institute of Marine Corrosion Protection, Guangxi Academy of Sciences, Nanning 530007, China
| | - Wolfgang Sand
- Key Laboratory of Marine Environmental Corrosion and Bio-Fouling, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; (D.W.); (F.G.); (K.M.)
- Aquatic Biotechnology, University of Duisburg-Essen, 45141 Essen, Germany
- Institute of Biosciences, Freiberg University of Mining and Technology, 09599 Freiberg, Germany
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4
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Buffo MM, Ferreira ALZ, Almeida RMRG, Farinas CS, Badino AC, Ximenes EA, Ladisch MR. Cellulolytic enzymes production guided by morphology engineering. Enzyme Microb Technol 2021; 149:109833. [PMID: 34311878 DOI: 10.1016/j.enzmictec.2021.109833] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 05/11/2021] [Accepted: 05/19/2021] [Indexed: 11/26/2022]
Abstract
Endoglucanase and xylanase are critical enzymes for liquefaction and enzyme hydrolysis of high solids lignocellulosic biomass to facilitate its transport and production of desired derived products. Here is reported how combinations of different spore concentrations and pH influence microbial morphology, and how this may be used to direct expression and secretion of enzymes by Aspergillus niger. While xylanase production is not affected by A. niger morphology changes, endoglucanase production is enhanced under conditions of lower stress and by morphology that results in pellets. β-glucosidase production is enhanced under dispersed morphology, which results in up to fourfold increase of this enzyme production under the tested experimental conditions. A morphologic scale (Y) is proposed based on a form factor that considers the size and frequency of each morphology class, and that points to conditions that result in high selectivity for either endoglucanase or β-glucosidase production. An equation proposed to relate enzyme activity to morphology provides a useful tool for tuning enzyme production of A. niger, where morphology is a first indication of relative enzyme activities in a fermentation broth.
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Affiliation(s)
- Mariane M Buffo
- Federal University of São Carlos, São Carlos, SP, 13565-905, Brazil
| | | | | | - Cristiane S Farinas
- Federal University of São Carlos, São Carlos, SP, 13565-905, Brazil; Embrapa Instrumentation, Rua XV de Novembro 1452, São Carlos, SP, 13560-970, Brazil
| | - Alberto C Badino
- Federal University of São Carlos, São Carlos, SP, 13565-905, Brazil.
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Jalil MTM, Ibrahim D. Partial Purification and Characterisation of Pectinase Produced by Aspergillus niger LFP-1 Grown on Pomelo Peels as a Substrate. Trop Life Sci Res 2021; 32:1-22. [PMID: 33936548 PMCID: PMC8054668 DOI: 10.21315/tlsr2021.32.1.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
In the present study, pectinase was produced by local fungal isolate, Aspergillus niger LFP-1 grown on pomelo peels as a sole carbon source under solid-state fermentation (SSF). The purification process begins with the concentration of crude enzyme using ammonium sulfate precipitation and followed by purification using anion-exchange column chromatography (DEAE-Sephadex) and subsequently using gel filtration column chromatography (Sephadex G-100). On the other hand, the molecular weight of the purified enzyme was determined through SDS-PAGE. The findings revealed the crude enzyme was purified up to 75.89 folds with a specific activity of 61.54 U/mg and the final yield obtained was 0.01%. The molecular mass of the purified pectinase was 48 kDa. The optimum pH and temperature were 3.5 and 50°C, respectively. This enzyme was stable at a range of pH 3.5 to 4.5 and a relatively high temperature (40°C–50°C) for 100 min. The Km and Vmax were found to be 3.89 mg/mL and 1701 U/mg, respectively. Meanwhile, pectin from citrus fruit and the metal ion (Co2+) were the best substrate and inducer to enhance pectinase yield, respectively.
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Affiliation(s)
- Mohd Taufiq Mat Jalil
- School of Biology, Faculty of Applied Sciences, Universiti Teknologi MARA, 40450 Shah Alam, Selangor, Malaysia.,Industrial Biotechnology Research Laboratory (IBRL), School of Biological Sciences, Universiti Sains Malaysia, 11800 USM Pulau Pinang, Malaysia
| | - Darah Ibrahim
- Industrial Biotechnology Research Laboratory (IBRL), School of Biological Sciences, Universiti Sains Malaysia, 11800 USM Pulau Pinang, Malaysia
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Salvatierra HN, Regner EL, Baigorí MD, Pera LM. Orchestration an extracellular lipase production from Aspergillus niger MYA 135: biomass morphology and fungal physiology. AMB Express 2021; 11:42. [PMID: 33730322 PMCID: PMC7969684 DOI: 10.1186/s13568-021-01202-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 03/07/2021] [Indexed: 11/10/2022] Open
Abstract
The impact of biomass morphology and culture conditions on fungal fermentation was widely reviewed in the literature. In this work, we presented three independent experiments in order to evaluate the influence of some of those input factors on a lipase production separately by using the Aspergillus niger MYA 135 and the two-stage fermentation technique. Regarding the culture modality, the biomass was pre-grown in a first reactor. Then, the washed mycelium was transferred to a second reactor to continue the study. Firstly, linear effects of fungal morphology and several physiological parameters on a lipase production were explored using the Plackett-Burman design. The dispersed fungal morphology was confirmed as a proper quality characteristic for producing an extracellular lipase activity. Concerning the impact of the carbon source on the biomass pre-growth, the sucrose (E = 9.923, p < 0.001) and the L-arabinose (E = 4.198, p = 0.009) presented positive and significant effects on the enzyme production. On the contrary, the supplementation of 0.05 g/L CaCl2 displayed a highly negative and significant effect on this process (E = - 7.390, p < 0.001). Secondly, the relationship between the enzyme production and the input variables N:C ratio, FeCl3 and olive oil was explored applying the central composite design. Among the model terms, the N:C ratio of the production medium had the most negative and significant influence on the enzyme synthesis. Thus, it was concluded that a low N:C ratio was preferable to increase its production. In addition, the bifunctional role of FeCl3 on this fungus was presented. Thirdly, a prove of concept assay was also discussed.
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7
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Fang Q, Du M, Chen J, Liu T, Zheng Y, Liao Z, Zhong Q, Wang L, Fang X, Wang J. Degradation and Detoxification of Aflatoxin B1 by Tea-Derived Aspergillus niger RAF106. Toxins (Basel) 2020; 12:toxins12120777. [PMID: 33291337 PMCID: PMC7762301 DOI: 10.3390/toxins12120777] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 12/02/2020] [Indexed: 11/16/2022] Open
Abstract
Microbial degradation is an effective and attractive method for eliminating aflatoxin B1 (AFB1), which is severely toxic to humans and animals. In this study, Aspergillus niger RAF106 could effectively degrade AFB1 when cultivated in Sabouraud dextrose broth (SDB) with contents of AFB1 ranging from 0.1 to 4 μg/mL. Treatment with yeast extract as a nitrogen source stimulated the degradation, but treatment with NaNO3 and NaNO2 as nitrogen sources and lactose and sucrose as carbon sources suppressed the degradation. Moreover, A. niger RAF106 still degraded AFB1 at initial pH values that ranged from 4 to 10 and at cultivation temperatures that ranged from 25 to 45 °C. In addition, intracellular enzymes or proteins with excellent thermotolerance were verified as being able to degrade AFB1 into metabolites with low or no mutagenicity. Furthermore, genomic sequence analysis indicated that the fungus was considered to be safe owing to the absence of virulence genes and the gene clusters for the synthesis of mycotoxins. These results indicate that A. niger RAF106 and its intracellular enzymes or proteins have a promising potential to be applied commercially in the processing and industry of food and feed to detoxify AFB1.
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Affiliation(s)
- Qian’an Fang
- Guangdong Provincial Key Laboratory of Food Quality and Safety, College of Food Science, South China Agricultural University, Guangzhou 510642, China; (Q.F.); (M.D.); (J.C.); (T.L.); (Y.Z.); (Z.L.); (Q.Z.); (L.W.)
| | - Minru Du
- Guangdong Provincial Key Laboratory of Food Quality and Safety, College of Food Science, South China Agricultural University, Guangzhou 510642, China; (Q.F.); (M.D.); (J.C.); (T.L.); (Y.Z.); (Z.L.); (Q.Z.); (L.W.)
| | - Jianwen Chen
- Guangdong Provincial Key Laboratory of Food Quality and Safety, College of Food Science, South China Agricultural University, Guangzhou 510642, China; (Q.F.); (M.D.); (J.C.); (T.L.); (Y.Z.); (Z.L.); (Q.Z.); (L.W.)
| | - Tong Liu
- Guangdong Provincial Key Laboratory of Food Quality and Safety, College of Food Science, South China Agricultural University, Guangzhou 510642, China; (Q.F.); (M.D.); (J.C.); (T.L.); (Y.Z.); (Z.L.); (Q.Z.); (L.W.)
| | - Yong Zheng
- Guangdong Provincial Key Laboratory of Food Quality and Safety, College of Food Science, South China Agricultural University, Guangzhou 510642, China; (Q.F.); (M.D.); (J.C.); (T.L.); (Y.Z.); (Z.L.); (Q.Z.); (L.W.)
| | - Zhenlin Liao
- Guangdong Provincial Key Laboratory of Food Quality and Safety, College of Food Science, South China Agricultural University, Guangzhou 510642, China; (Q.F.); (M.D.); (J.C.); (T.L.); (Y.Z.); (Z.L.); (Q.Z.); (L.W.)
- Lingnan Guangdong Laboratory of Modern Agriculture, Guangzhou 510642, China
| | - Qingping Zhong
- Guangdong Provincial Key Laboratory of Food Quality and Safety, College of Food Science, South China Agricultural University, Guangzhou 510642, China; (Q.F.); (M.D.); (J.C.); (T.L.); (Y.Z.); (Z.L.); (Q.Z.); (L.W.)
- Lingnan Guangdong Laboratory of Modern Agriculture, Guangzhou 510642, China
| | - Li Wang
- Guangdong Provincial Key Laboratory of Food Quality and Safety, College of Food Science, South China Agricultural University, Guangzhou 510642, China; (Q.F.); (M.D.); (J.C.); (T.L.); (Y.Z.); (Z.L.); (Q.Z.); (L.W.)
- Lingnan Guangdong Laboratory of Modern Agriculture, Guangzhou 510642, China
| | - Xiang Fang
- Guangdong Provincial Key Laboratory of Food Quality and Safety, College of Food Science, South China Agricultural University, Guangzhou 510642, China; (Q.F.); (M.D.); (J.C.); (T.L.); (Y.Z.); (Z.L.); (Q.Z.); (L.W.)
- Lingnan Guangdong Laboratory of Modern Agriculture, Guangzhou 510642, China
- Correspondence: (X.F.); (J.W.)
| | - Jie Wang
- Guangdong Provincial Key Laboratory of Food Quality and Safety, College of Food Science, South China Agricultural University, Guangzhou 510642, China; (Q.F.); (M.D.); (J.C.); (T.L.); (Y.Z.); (Z.L.); (Q.Z.); (L.W.)
- Lingnan Guangdong Laboratory of Modern Agriculture, Guangzhou 510642, China
- Guangdong Open Laboratory of Applied Microbiology, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Guangdong Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China
- Correspondence: (X.F.); (J.W.)
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Miyazawa K, Yoshimi A, Abe K. The mechanisms of hyphal pellet formation mediated by polysaccharides, α-1,3-glucan and galactosaminogalactan, in Aspergillus species. Fungal Biol Biotechnol 2020; 7:10. [PMID: 32626592 PMCID: PMC7329490 DOI: 10.1186/s40694-020-00101-4] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 06/12/2020] [Indexed: 01/01/2023] Open
Abstract
Filamentous fungi are widely used for production of enzymes and chemicals, and are industrially cultivated both in liquid and solid cultures. Submerged culture is often used as liquid culture for filamentous fungi. In submerged culture, filamentous fungi show diverse macromorphology such as hyphal pellets and dispersed hyphae depending on culture conditions and genetic backgrounds of fungal strains. Although the macromorphology greatly affects the productivity of submerged cultures, the specific cellular components needed for hyphal aggregation after conidial germination have not been characterized. Recently we reported that the primary cell wall polysaccharide α-1,3-glucan and the extracellular polysaccharide galactosaminogalactan (GAG) contribute to hyphal aggregation in Aspergillus oryzae, and that a strain deficient in both α-1,3-glucan and GAG shows dispersed hyphae in liquid culture. In this review, we summarize our current understanding of the contribution of chemical properties of α-1,3-glucan and GAG to hyphal aggregation. Various ascomycetes and basidiomycetes have α-1,3-glucan synthase gene(s). In addition, some Pezizomycotina fungi, including species used in the fermentation industry, also have GAG biosynthetic genes. We also review here the known mechanisms of biosynthesis of α-1,3-glucan and GAG. Regulation of the biosynthesis of the two polysaccharides could be a potential way of controlling formation of hyphal pellets.
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Affiliation(s)
- Ken Miyazawa
- Laboratory of Applied Microbiology, Department of Microbial Biotechnology, Graduate School of Agricultural Science, Tohoku University, 468-1 Aramaki-Aoba, Aoba-ku, Sendai, 980-8572 Japan
| | - Akira Yoshimi
- Laboratory of Environmental Interface Technology of Filamentous Fungi, Graduate School of Agriculture, Kyoto University, Oiwake-cho, Kitashirakawa, Sakyo-ku, Kyoto, 606-8502 Japan.,ABE-project, New Industry Creation Hatchery Center, Tohoku University, 6-6-10 Aramaki-Aoba, Aoba-ku, Sendai, 980-8579 Japan
| | - Keietsu Abe
- Laboratory of Applied Microbiology, Department of Microbial Biotechnology, Graduate School of Agricultural Science, Tohoku University, 468-1 Aramaki-Aoba, Aoba-ku, Sendai, 980-8572 Japan.,ABE-project, New Industry Creation Hatchery Center, Tohoku University, 6-6-10 Aramaki-Aoba, Aoba-ku, Sendai, 980-8579 Japan.,Laboratory of Microbial Resources, Department of Microbial Biotechnology, Graduate School of Agricultural Science, Tohoku University, 468-1 Aramaki-Aoba, Aoba-ku, Sendai, 980-8572 Japan
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9
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Salgado-Bautista D, Volke-Sepúlveda T, Figueroa-Martínez F, Carrasco-Navarro U, Chagolla-López A, Favela-Torres E. Solid-state fermentation increases secretome complexity in Aspergillus brasiliensis. Fungal Biol 2020; 124:723-734. [PMID: 32690254 DOI: 10.1016/j.funbio.2020.04.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 04/19/2020] [Accepted: 04/25/2020] [Indexed: 02/06/2023]
Abstract
Aspergillus is used for the industrial production of enzymes and organic acids, mainly by submerged fermentation (SmF). However, solid-state fermentation (SSF) offers several advantages over SmF. Although differences related to lower catabolite repression and substrate inhibition, as well as higher extracellular enzyme production in SSF compared to SmF have been shown, the mechanisms undelaying such differences are still unknown. To explain some differences among SSF and SmF, the secretome of Aspergillus brasiliensis obtained from cultures in a homogeneous physiological state with high glucose concentrations was analyzed. Of the regulated proteins produced by SmF, 74% were downregulated by increasing the glucose concentration, whereas all those produced by SSF were upregulated. The most abundant and upregulated protein found in SSF was the transaldolase, which could perform a moonlighting function in fungal adhesion to the solid support. This study evidenced that SSF: (i) improves the kinetic parameters in relation to SmF, (ii) prevents the catabolite repression, (iii) increases the branching level of hyphae and oxidative metabolism, as well as the concentration and diversity of secreted proteins, and (iv) favors the secretion of typically intracellular proteins that could be involved in fungal adhesion. All these differences can be related to the fact that molds are more specialized to growth in solid materials because they mimic their natural habitat.
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Affiliation(s)
- Daniel Salgado-Bautista
- Departamento de Biotecnología, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, 09340, Ciudad de México, Mexico.
| | - Tania Volke-Sepúlveda
- Departamento de Biotecnología, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, 09340, Ciudad de México, Mexico.
| | - Francisco Figueroa-Martínez
- CONACyT Research Fellow, Departamento de Biotecnología, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, 09340, Ciudad de México, Mexico.
| | - Ulises Carrasco-Navarro
- Departamento de Biotecnología, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, 09340, Ciudad de México, Mexico.
| | - Alicia Chagolla-López
- Laboratorio de Proteómica- Cinvestav Unidad Irapuato, Km 9.6 Libramiento Norte Carretera Irapuato-León, Irapuato, 36824, Guanajuato, Mexico.
| | - Ernesto Favela-Torres
- Departamento de Biotecnología, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, 09340, Ciudad de México, Mexico.
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10
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Du L, Gao B, Liang J, Wang Y, Xiao Y, Zhu D. Microparticle-enhanced Chaetomium globosum DX-THS3 β-d-glucuronidase production by controlled fungal morphology in submerged fermentation. 3 Biotech 2020; 10:100. [PMID: 32099741 DOI: 10.1007/s13205-020-2068-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 01/10/2020] [Indexed: 11/29/2022] Open
Abstract
Glycyrrhetinic acid monoglucuronide (GAMG) is a novel and low-calorie sweetener that is widely applied in the food industry. This study aimed to enhance the production of fungal β-d-glucuronidase (GUS) via a novel fermentation technique by evaluating the effects of the various microparticles on Chaetomium globosum DX-THS3 GUS production. Results showed that the silica microparticle greatly affected the morphology of DX-THS3 strain relative to the other microparticles. Microbial structure imaging results showed that the smallest average diameter of fungal pellets was achieved (0.7 ± 0.1 mm) by adding 10 g/L (600 mesh) of silica. The diameter of the control was 3.0 ± 0.5 mm in shake flask fermentation. The GUS activity and biomass of DX-THS3 reached 680 U/mL and 4.2 g/L, respectively, with the use of 10 g/L of silica microparticles, whereas those of the control were 210 U/mL and 2.8 g/L via shake flask fermentation. The findings in this study may provide a potential strategy for designing the morphology of filamentous fungi using microparticles in the industrial production of GAMG.
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Affiliation(s)
- Liangqing Du
- 1Key Lab of Bioprocess Engineering of Jiangxi Province, College of life Sciences, Jiangxi Science and Technology Normal University, Nanchang, 330013 China
| | - Boliang Gao
- 1Key Lab of Bioprocess Engineering of Jiangxi Province, College of life Sciences, Jiangxi Science and Technology Normal University, Nanchang, 330013 China
| | - JinFeng Liang
- 1Key Lab of Bioprocess Engineering of Jiangxi Province, College of life Sciences, Jiangxi Science and Technology Normal University, Nanchang, 330013 China
| | - Ya Wang
- 1Key Lab of Bioprocess Engineering of Jiangxi Province, College of life Sciences, Jiangxi Science and Technology Normal University, Nanchang, 330013 China
| | - Yiwen Xiao
- 1Key Lab of Bioprocess Engineering of Jiangxi Province, College of life Sciences, Jiangxi Science and Technology Normal University, Nanchang, 330013 China
| | - Du Zhu
- 1Key Lab of Bioprocess Engineering of Jiangxi Province, College of life Sciences, Jiangxi Science and Technology Normal University, Nanchang, 330013 China.,2Key Laboratory of Protection and Utilization of Subtropic Plant Resources of Jiangxi Province, Jiangxi Normal University, Nanchang, 330022 China
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Schmideder S, Barthel L, Müller H, Meyer V, Briesen H. From three‐dimensional morphology to effective diffusivity in filamentous fungal pellets. Biotechnol Bioeng 2019; 116:3360-3371. [DOI: 10.1002/bit.27166] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Revised: 08/30/2019] [Accepted: 09/02/2019] [Indexed: 12/14/2022]
Affiliation(s)
- Stefan Schmideder
- Chair of Process Systems EngineeringTechnical University of MunichFreising Germany
| | - Lars Barthel
- Department of Applied and Molecular Microbiology, Institute of BiotechnologyTechnische Universität BerlinBerlin Germany
| | - Henri Müller
- Chair of Process Systems EngineeringTechnical University of MunichFreising Germany
| | - Vera Meyer
- Department of Applied and Molecular Microbiology, Institute of BiotechnologyTechnische Universität BerlinBerlin Germany
| | - Heiko Briesen
- Chair of Process Systems EngineeringTechnical University of MunichFreising Germany
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Schmideder S, Barthel L, Friedrich T, Thalhammer M, Kovačević T, Niessen L, Meyer V, Briesen H. An X‐ray microtomography‐based method for detailed analysis of the three‐dimensional morphology of fungal pellets. Biotechnol Bioeng 2019; 116:1355-1365. [DOI: 10.1002/bit.26956] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Revised: 12/21/2018] [Accepted: 01/09/2019] [Indexed: 12/13/2022]
Affiliation(s)
- Stefan Schmideder
- Technical University of Munich, School of Life Sciences Weihenstephan, Chair of Process Systems EngineeringFreising Germany
| | - Lars Barthel
- Department of Applied and Molecular MicrobiologyInstitute of Biotechnology, Technische Universität BerlinBerlin Germany
| | - Tiaan Friedrich
- Technical University of Munich, School of Life Sciences Weihenstephan, Chair of Process Systems EngineeringFreising Germany
| | - Michaela Thalhammer
- Technical University of Munich, School of Life Sciences Weihenstephan, Chair of Process Systems EngineeringFreising Germany
| | - Tijana Kovačević
- Technical University of Munich, School of Life Sciences Weihenstephan, Chair of Process Systems EngineeringFreising Germany
| | - Ludwig Niessen
- Lehrstuhl für Technische MikrobiologieTechnical University of MunichFreising Germany
| | - Vera Meyer
- Department of Applied and Molecular MicrobiologyInstitute of Biotechnology, Technische Universität BerlinBerlin Germany
| | - Heiko Briesen
- Technical University of Munich, School of Life Sciences Weihenstephan, Chair of Process Systems EngineeringFreising Germany
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Identification of markers at various stages of batch fermentation and improved production of xylanase using Aspergillus niger (KP874102.1). 3 Biotech 2018; 8:337. [PMID: 30073122 DOI: 10.1007/s13205-018-1363-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Accepted: 07/18/2018] [Indexed: 10/28/2022] Open
Abstract
Improved xylanase production was carried out through optimization of environmental stresses during spore preservation, seed cultivation and batch fermentation and identifies the markers at various stages. The maximum spore size (radius 6.5 µm) of Aspergillus niger was noticed after 28 days of spore preservation. During seed cultivation, the hypha formed alongside of germination tube (length 196.8 µm) was noticed only at pH-7 after 18 h of incubation at 28 °C. Therefore, pH-7 and 28 °C were considered as optimum during seed cultivation. In this stage, the final pH of the medium was found to be 6.2 which can be used as marker for completion of seed culture. The production media was optimized through Taguchi methodology. The maximum xylanase production was found to be 1575.93 U. The optimum concentration for media components was found to be xylan from beechwood of 3 g/l, potassium nitrate of 10 g/l, magnesium sulphate of 5 g/l, di-potassium hydrogen phosphate of 50 mM, calcium carbonate of 2 g/l, 1000× of trace element (1 ml) and sodium chloride of 5 g/l. It is evident that improved production of xylanase can be possible through optimization of environmental stresses during spore preservation, seed cultivation and batch fermentation and can be intensified through identification of markers at various stages of fermentation process.
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Liu Y, Hu T, Zhao J, Lv Y, Ren R. Simultaneous removal of carbon and nitrogen by mycelial pellets of a heterotrophic nitrifying fungus-Penicillium sp. L1. J Biosci Bioeng 2017; 123:223-229. [DOI: 10.1016/j.jbiosc.2016.08.009] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Revised: 07/21/2016] [Accepted: 08/25/2016] [Indexed: 10/20/2022]
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Prasad Uday US, Bandyopadhyay TK, Goswami S, Bhunia B. Optimization of physical and morphological regime for improved cellulase free xylanase production by fed batch fermentation using Aspergillus niger (KP874102.1) and its application in bio-bleaching. Bioengineered 2016; 8:137-146. [PMID: 27780405 DOI: 10.1080/21655979.2016.1218580] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Abstract
The physiological and morphological changes were extensively studied during fed batch fermentation using newly isolated Aspergillus niger (KP874102.1). Significantly higher xylanase production was possible through optimization of environmental stresses by fed batch process. The fed batch fermentation was carried out for improved xylanase production (2524 U) where initial xylan was kept 1.5 g/L in the production medium. However, 3 g/L of xylan with 50 mM K2HPO4 having pH-7 was consecutively fed at 72 and 120 h of fermentation. K2HPO4 showed significant role both the morphology of the microorganism and produces enzymes in fed batch fermentation. During feeding phase, the pH was found in the range of 6.5 to 7 which was used as marker for the fed batch process. The crude enzyme was used for the bio-bleaching of banana pulp.
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Affiliation(s)
| | | | - Saswata Goswami
- b Department of Biotechnology , Birla Institute of Technology, Mesra , Ranchi , India
| | - Biswanath Bhunia
- c Department of Bioengineering , National Institute of Technology , Agartala , India
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Walisko R, Moench-Tegeder J, Blotenberg J, Wucherpfennig T, Krull R. The Taming of the Shrew--Controlling the Morphology of Filamentous Eukaryotic and Prokaryotic Microorganisms. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2015; 149:1-27. [PMID: 25796624 DOI: 10.1007/10_2015_322] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
One of the most sensitive process characteristics in the cultivation of filamentous biological systems is their complex morphology. In submerged cultures, the observed macroscopic morphology of filamentous microorganisms varies from freely dispersed mycelium to dense spherical pellets consisting of a more or less dense, branched and partially intertwined network of hyphae. Recently, the freely dispersed mycelium form has been in high demand for submerged cultivation because this morphology enhances the growth and production of several valuable products. A distinct filamentous morphology and productivity are influenced by the environment and can be controlled by inoculum concentration, spore viability, pH value, cultivation temperature, dissolved oxygen concentration, medium composition, mechanical stress or process mode as well as through the addition of inorganic salts or microparticles, which provides the opportunity to tailor a filamentous morphology. The suitable morphology for a given bioprocess varies depending on the desired product. Therefore, the advantages and disadvantages of each morphological type should be carefully evaluated for every biological system. Because of the high industrial relevance of filamentous microorganisms, research in previous years has aimed at the development of tools and techniques to characterise their growth and obtain quantitative estimates of their morphological properties. The focus of this review is on current advances in the characterisation and control of filamentous morphology with a separation of eukaryotic and prokaryotic systems. Furthermore, recent strategies to tailor the morphology through classical biochemical process parameters, morphology and genetic engineering to optimise the productivity of these filamentous systems are discussed.
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Affiliation(s)
- Robert Walisko
- Institute of Biochemical Engineering, Technische Universität Braunschweig, Gaußstraße 17, 38106, Braunschweig, Germany,
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Meyer V, Fiedler M, Nitsche B, King R. The Cell Factory Aspergillus Enters the Big Data Era: Opportunities and Challenges for Optimising Product Formation. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2015; 149:91-132. [PMID: 25616499 DOI: 10.1007/10_2014_297] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Living with limits. Getting more from less. Producing commodities and high-value products from renewable resources including waste. What is the driving force and quintessence of bioeconomy outlines the lifestyle and product portfolio of Aspergillus, a saprophytic genus, to which some of the top-performing microbial cell factories belong: Aspergillus niger, Aspergillus oryzae and Aspergillus terreus. What makes them so interesting for exploitation in biotechnology and how can they help us to address key challenges of the twenty-first century? How can these strains become trimmed for better growth on second-generation feedstocks and how can we enlarge their product portfolio by genetic and metabolic engineering to get more from less? On the other hand, what makes it so challenging to deduce biological meaning from the wealth of Aspergillus -omics data? And which hurdles hinder us to model and engineer industrial strains for higher productivity and better rheological performance under industrial cultivation conditions? In this review, we will address these issues by highlighting most recent findings from the Aspergillus research with a focus on fungal growth, physiology, morphology and product formation. Indeed, the last years brought us many surprising insights into model and industrial strains. They clearly told us that similar is not the same: there are different ways to make a hypha, there are more protein secretion routes than anticipated and there are different molecular and physical mechanisms which control polar growth and the development of hyphal networks. We will discuss new conceptual frameworks derived from these insights and the future scientific advances necessary to create value from Aspergillus Big Data.
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Affiliation(s)
- Vera Meyer
- Department Applied and Molecular Microbiology, Institute of Biotechnology, Berlin University of Technology, Gustav-Meyer-Allee 25, 13355, Berlin, Germany,
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