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Feufack-Donfack LB, Sarah-Matio EM, Abate LM, Bouopda Tuedom AG, Ngano Bayibéki A, Maffo Ngou C, Toto JC, Sandeu MM, Eboumbou Moukoko CE, Ayong L, Awono-Ambene P, Morlais I, Nsango SE. Epidemiological and entomological studies of malaria transmission in Tibati, Adamawa region of Cameroon 6 years following the introduction of long-lasting insecticide nets. Parasit Vectors 2021; 14:247. [PMID: 33964974 PMCID: PMC8106832 DOI: 10.1186/s13071-021-04745-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Accepted: 04/23/2021] [Indexed: 12/03/2022] Open
Abstract
BACKGROUND Malaria remains a serious public health problem in Cameroon. Implementation of control interventions requires prior knowledge of the local epidemiological situation. Here we report the results of epidemiological and entomological surveys carried out in Tibati, Adamawa Region, Cameroon, an area where malaria transmission is seasonal, 6 years after the introduction of long-lasting insecticidal bed nets. METHODS Cross-sectional studies were carried out in July 2015 and 2017 in Tibati. Thick blood smears and dried blood spots were collected from asymptomatic and symptomatic individuals in the community and at health centers, respectively, and used for the molecular diagnosis of Plasmodium species. Adult mosquitoes were collected by indoor residual spraying and identified morphologically and molecularly. The infection status of Plasmodium spp. was determined by quantitative PCR, and positivity of PCR-positive samples was confirmed by Sanger sequencing. RESULTS Overall malaria prevalence in our study population was 55.0% (752/1367) and Plasmodium falciparum was the most prevalent parasite species (94.3%), followed by P. malariae (17.7%) and P. ovale (0.8%); 92 (12.7%) infections were mixed infections. Infection parameters varied according to clinical status (symptomatic/asymptomatic) and age of the sampled population and the collection sites. Infection prevalence was higher in asymptomatic carriers (60.8%), but asexual and sexual parasite densities were lower. Prevalence and intensity of infection decreased with age in both the symptomatic and asymptomatic groups. Heterogeneity in infections was observed at the neighborhood level, revealing hotspots of transmission. Among the 592 Anopheles mosquitoes collected, 212 (35.8%) were An. gambiae, 172 (29.1%) were An. coluzzii and 208 (35.1%) were An. funestus (s.s.). A total of 26 (4.39%) mosquito specimens were infected by Plasmodium sp. and the three Anopheles mosquitoes transmitted Plasmodium at equal efficiency. Surprisingly, we found an An. coluzzii specimen infected by Plasmodium vivax, which confirms circulation of this species in Cameroon. The positivity of all 26 PCR-positive Plasmodium-infected mosquitoes was successively confirmed by sequencing analysis. CONCLUSION Our study presents the baseline malaria parasite burden in Tibati, Adamawa Region, Cameroon. Our results highlight the high malaria endemicity in the area, and hotspots of disease transmission are identified. Parasitological indices suggest low bednet usage and that implementation of control interventions in the area is needed to reduce malaria burden. We also report for the first time a mosquito vector with naturally acquired P. vivax infection in Cameroon.
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Affiliation(s)
- Lionel Brice Feufack-Donfack
- Service de Paludisme du Centre Pasteur Cameroun, BP 1274, Yaounde, Cameroon
- CNRS UPR 9022, Inserm U 963, Université de Strasbourg, 2, allée Konrad Roentgen, 67084 Strasbourg Cedex, France
| | - Elangwe Milo Sarah-Matio
- Service de Paludisme du Centre Pasteur Cameroun, BP 1274, Yaounde, Cameroon
- UMR MIVEGEC, IRD, CNRS, Université de Montpellier, Institut de Recherche pour le Développement, 911 avenue Agropolis, 34394 Montpellier, France
| | - Luc Marcel Abate
- UMR MIVEGEC, IRD, CNRS, Université de Montpellier, Institut de Recherche pour le Développement, 911 avenue Agropolis, 34394 Montpellier, France
| | - Aline Gaelle Bouopda Tuedom
- Service de Paludisme du Centre Pasteur Cameroun, BP 1274, Yaounde, Cameroon
- Faculté de Médecine et des Sciences Pharmaceutiques de l’Université de Douala (FMSP–UD), BP 2701 Douala, Cameroon
| | - Albert Ngano Bayibéki
- Université Catholique d’Afrique Centrale, Yaoundé-Campus Messa, BP 1110, Yaounde, Cameroon
| | - Christelle Maffo Ngou
- Service de Paludisme du Centre Pasteur Cameroun, BP 1274, Yaounde, Cameroon
- UMR MIVEGEC, IRD, CNRS, Université de Montpellier, Institut de Recherche pour le Développement, 911 avenue Agropolis, 34394 Montpellier, France
| | - Jean-Claude Toto
- Laboratoire de Recherche sur le Paludisme, Organisation de Coordination pour la lutte contre les Endémies en Afrique Centrale, BP 288, Yaounde, Cameroon
| | - Maurice Marcel Sandeu
- Department of Medical Entomology, Centre for Research in Infectious Diseases, Yaounde, 13591 Cameroon
- Department of Microbiology and Infectious Diseases, School of Veterinary Medicine and Sciences, University of Ngaoundere, PO Box 454, Ngaoundere, Cameroon
| | - Carole Else Eboumbou Moukoko
- Service de Paludisme du Centre Pasteur Cameroun, BP 1274, Yaounde, Cameroon
- Faculté de Médecine et des Sciences Pharmaceutiques de l’Université de Douala (FMSP–UD), BP 2701 Douala, Cameroon
| | - Lawrence Ayong
- Service de Paludisme du Centre Pasteur Cameroun, BP 1274, Yaounde, Cameroon
| | - Parfait Awono-Ambene
- Laboratoire de Recherche sur le Paludisme, Organisation de Coordination pour la lutte contre les Endémies en Afrique Centrale, BP 288, Yaounde, Cameroon
| | - Isabelle Morlais
- Service de Paludisme du Centre Pasteur Cameroun, BP 1274, Yaounde, Cameroon
- UMR MIVEGEC, IRD, CNRS, Université de Montpellier, Institut de Recherche pour le Développement, 911 avenue Agropolis, 34394 Montpellier, France
| | - Sandrine Eveline Nsango
- Service de Paludisme du Centre Pasteur Cameroun, BP 1274, Yaounde, Cameroon
- Faculté de Médecine et des Sciences Pharmaceutiques de l’Université de Douala (FMSP–UD), BP 2701 Douala, Cameroon
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Nouemssi SB, Ghribi M, Beauchemin R, Meddeb-Mouelhi F, Germain H, Desgagné-Penix I. Rapid and Efficient Colony-PCR for High Throughput Screening of Genetically Transformed Chlamydomonas reinhardtii. Life (Basel) 2020; 10:E186. [PMID: 32927613 PMCID: PMC7554959 DOI: 10.3390/life10090186] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 08/29/2020] [Accepted: 09/08/2020] [Indexed: 01/07/2023] Open
Abstract
Microalgae biotechnologies are rapidly developing into new commercial settings. Several high value products already exist on the market, and biotechnological development is focused on genetic engineering of microalgae to open up future economic opportunities for food, fuel and pharmacological production. Colony-polymerase chain reaction (colony-PCR or cPCR) is a critical method for screening genetically transformed microalgae cells. However, the ability to rapidly screen thousands of transformants using the current colony-PCR method, becomes a very laborious and time-consuming process. Herein, the non-homologous transformation of Chlamydomonas reinhardtii using the electroporation and glass beads methods generated more than seven thousand transformants. In order to manage this impressive number of clones efficiently, we developed a high-throughput screening (HTS) cPCR method to rapidly maximize the detection and selection of positively transformed clones. For this, we optimized the Chlamydomonas transformed cell layout on the culture media to improve genomic DNA extraction and cPCR in 96-well plate. The application of this optimized HTS cPCR method offers a rapid, less expensive and reliable method for the detection and selection of microalgae transformants. Our method, which saves up to 80% of the experimental time, holds promise for evaluating genetically transformed cells and selection for microalgae-based biotechnological applications such as synthetic biology and metabolic engineering.
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Affiliation(s)
- Serge Basile Nouemssi
- Department of Chemistry, Biochemistry and Physics, Université du Québec à Trois-Rivières, 3351, boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7, Canada; (S.B.N.); (M.G.); (R.B.); (F.M.-M.); (H.G.)
| | - Manel Ghribi
- Department of Chemistry, Biochemistry and Physics, Université du Québec à Trois-Rivières, 3351, boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7, Canada; (S.B.N.); (M.G.); (R.B.); (F.M.-M.); (H.G.)
| | - Rémy Beauchemin
- Department of Chemistry, Biochemistry and Physics, Université du Québec à Trois-Rivières, 3351, boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7, Canada; (S.B.N.); (M.G.); (R.B.); (F.M.-M.); (H.G.)
| | - Fatma Meddeb-Mouelhi
- Department of Chemistry, Biochemistry and Physics, Université du Québec à Trois-Rivières, 3351, boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7, Canada; (S.B.N.); (M.G.); (R.B.); (F.M.-M.); (H.G.)
- Groupe de Recherche en Biologie Végétale, Université du Québec à Trois-Rivières, 3351, boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7, Canada
| | - Hugo Germain
- Department of Chemistry, Biochemistry and Physics, Université du Québec à Trois-Rivières, 3351, boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7, Canada; (S.B.N.); (M.G.); (R.B.); (F.M.-M.); (H.G.)
- Groupe de Recherche en Biologie Végétale, Université du Québec à Trois-Rivières, 3351, boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7, Canada
| | - Isabel Desgagné-Penix
- Department of Chemistry, Biochemistry and Physics, Université du Québec à Trois-Rivières, 3351, boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7, Canada; (S.B.N.); (M.G.); (R.B.); (F.M.-M.); (H.G.)
- Groupe de Recherche en Biologie Végétale, Université du Québec à Trois-Rivières, 3351, boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7, Canada
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Advances in Directly Amplifying Nucleic Acids from Complex Samples. BIOSENSORS-BASEL 2019; 9:bios9040117. [PMID: 31574959 PMCID: PMC6955841 DOI: 10.3390/bios9040117] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Revised: 09/23/2019] [Accepted: 09/26/2019] [Indexed: 12/15/2022]
Abstract
Advances in nucleic acid amplification technologies have revolutionized diagnostics for systemic, inherited, and infectious diseases. Current assays and platforms, however, often require lengthy experimental procedures and multiple instruments to remove contaminants and inhibitors from clinically-relevant, complex samples. This requirement of sample preparation has been a bottleneck for using nucleic acid amplification tests (NAATs) at the point of care (POC), though advances in “lab-on-chip” platforms that integrate sample preparation and NAATs have made great strides in this space. Alternatively, direct NAATs—techniques that minimize or even bypass sample preparation—present promising strategies for developing POC diagnostic tools for analyzing real-world samples. In this review, we discuss the current status of direct NAATs. Specifically, we surveyed potential testing systems published from 1989 to 2017, and analyzed their performances in terms of robustness, sensitivity, clinical relevance, and suitability for POC diagnostics. We introduce bubble plots to facilitate our analysis, as bubble plots enable effective visualization of the performances of these direct NAATs. Through our review, we hope to initiate an in-depth examination of direct NAATs and their potential for realizing POC diagnostics, and ultimately transformative technologies that can further enhance healthcare.
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Zhou G, Li Q, Huang L, Wu Y, Wu M, Wang WC. Quality Analysis of DNA from Cord Blood Buffy Coat: The Best Neonatal DNA Source for Epidemiological Studies? Biopreserv Biobank 2016; 14:165-71. [PMID: 26885947 DOI: 10.1089/bio.2015.0075] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Affiliation(s)
- Guangdi Zhou
- MOE-Shanghai Key Laboratory of Children's Environmental Health, Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | - Qin Li
- Department of Obstetrics and Gynecology, Changhai Hospital Affiliated to the Second Military Medical University, Shanghai, China
| | - Lisu Huang
- Department of Pediatrics, Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | - Yuhang Wu
- MOE-Shanghai Key Laboratory of Children's Environmental Health, Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | - Meiqin Wu
- MOE-Shanghai Key Laboratory of Children's Environmental Health, Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | - Weiye C. Wang
- MOE-Shanghai Key Laboratory of Children's Environmental Health, Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
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Chen J, Wilson ES, Dahmer MK, Quasney MW, Waterer GW, Feldman C, Wunderink RG. Lack of association of the caspase-12 long allele with community-acquired pneumonia in people of African descent. PLoS One 2014; 9:e89194. [PMID: 24586588 PMCID: PMC3935862 DOI: 10.1371/journal.pone.0089194] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2013] [Accepted: 01/15/2014] [Indexed: 11/19/2022] Open
Abstract
Community-acquired pneumonia (CAP) is a common cause of sepsis. Active full-length caspase-12 (CASP12L), confined to the people of African descent, has been associated with increased susceptibility to and mortality from severe sepsis. The objective of this study was to determine whether CASP12L was a marker for susceptibility and/or severity of CAP. We examined three CAP cohorts and two control populations: 241 adult Memphis African American CAP patients, 443 pediatric African American CAP patients, 90 adult South African CAP patients, 120 Memphis healthy adult African American controls and 405 adult Chicago African American controls. Clinical outcomes including mortality, acute respiratory distress syndrome (ARDS), septic shock or severe sepsis, need for mechanical ventilation, and S. pneumoniae bacteremia. Neither in the three individual CAP cohorts nor in the combined CAP cohorts, was mortality in CASP12L carriers significantly different from that in non-CASP12L carriers. No statistically significant association between genotype and any measures of CAP severity was found in any cohort. We conclude that the functional CASP12L allele is not a marker for susceptibility and/or severity of CAP.
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Affiliation(s)
- Jiwang Chen
- Department of Medicine, Northwestern University, Chicago, Illinois, United States of America
- Section of Pulmonary, Critical Care, Sleep and Allergy, University of Illinois at Chicago, Chicago, Illinois, United States of America
| | - Esther S. Wilson
- Oakbrook Pediatrics, Summerville, South Carolina, United States of America
| | - Mary K. Dahmer
- Department of Pediatrics and Communicable Diseases, University of Michigan, Ann Arbor, Michigan, United States of America
| | - Michael W. Quasney
- Department of Pediatrics and Communicable Diseases, University of Michigan, Ann Arbor, Michigan, United States of America
| | - Grant W. Waterer
- Department of Medicine, Northwestern University, Chicago, Illinois, United States of America
- School of Medicine and Pharmacology, University of Western Australia, Perth, Western Australia, Australia
| | - Charles Feldman
- Division of Pulmonology, Department of Internal Medicine, Charlotte Maxeke Johannesburg Academic Hospital, and Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Richard G. Wunderink
- Department of Medicine, Northwestern University, Chicago, Illinois, United States of America
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