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For: Freilich S, Massingham T, Blanc E, Goldovsky L, Thornton JM. Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteins. Genome Biol 2006;7:R89. [PMID: 17029626 PMCID: PMC1794571 DOI: 10.1186/gb-2006-7-10-r89] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2006] [Revised: 07/26/2006] [Accepted: 10/09/2006] [Indexed: 01/22/2023]  Open
Number Cited by Other Article(s)
1
Bourret J, Borvető F, Bravo IG. Subfunctionalisation of paralogous genes and evolution of differential codon usage preferences: The showcase of polypyrimidine tract binding proteins. J Evol Biol 2023;36:1375-1392. [PMID: 37667674 DOI: 10.1111/jeb.14212] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 07/11/2023] [Accepted: 07/12/2023] [Indexed: 09/06/2023]
2
Herrboldt MA, Steffen MA, McGouran CN, Bonett RM. Pheromone Gene Diversification and the Evolution of Courtship Glands in Plethodontid Salamanders. J Mol Evol 2021;89:576-587. [PMID: 34392385 DOI: 10.1007/s00239-021-10026-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Accepted: 07/28/2021] [Indexed: 11/30/2022]
3
Brohard-Julien S, Frouin V, Meyer V, Chalabi S, Deleuze JF, Le Floch E, Battail C. Region-specific expression of young small-scale duplications in the human central nervous system. BMC Ecol Evol 2021;21:59. [PMID: 33882820 PMCID: PMC8059171 DOI: 10.1186/s12862-021-01794-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Accepted: 04/11/2021] [Indexed: 11/10/2022]  Open
4
Chau LM, Goodisman MAD. Gene duplication and the evolution of phenotypic diversity in insect societies. Evolution 2017;71:2871-2884. [PMID: 28875541 DOI: 10.1111/evo.13356] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2017] [Revised: 08/29/2017] [Accepted: 08/31/2017] [Indexed: 12/16/2022]
5
Schmitz JF, Zimmer F, Bornberg-Bauer E. Mechanisms of transcription factor evolution in Metazoa. Nucleic Acids Res 2016;44:6287-97. [PMID: 27288445 PMCID: PMC5291267 DOI: 10.1093/nar/gkw492] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2016] [Revised: 05/18/2016] [Accepted: 05/22/2016] [Indexed: 11/12/2022]  Open
6
Xu A, Li G, Yang D, Wu S, Ouyang H, Xu P, He F. Evolutionary Characteristics of Missing Proteins: Insights into the Evolution of Human Chromosomes Related to Missing-Protein-Encoding Genes. J Proteome Res 2015;14:4985-94. [DOI: 10.1021/acs.jproteome.5b00450] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
7
Tanaka K, Diekmann Y, Hazbun A, Hijazi A, Vreede B, Roch F, Sucena É. Multispecies Analysis of Expression Pattern Diversification in the Recently Expanded Insect Ly6 Gene Family. Mol Biol Evol 2015;32:1730-47. [PMID: 25743545 PMCID: PMC4476152 DOI: 10.1093/molbev/msv052] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
8
Complexity of gene expression evolution after duplication: protein dosage rebalancing. GENETICS RESEARCH INTERNATIONAL 2014;2014:516508. [PMID: 25197576 PMCID: PMC4150538 DOI: 10.1155/2014/516508] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/26/2014] [Accepted: 08/03/2014] [Indexed: 11/17/2022]
9
Diekmann Y, Seixas E, Gouw M, Tavares-Cadete F, Seabra MC, Pereira-Leal JB. Thousands of rab GTPases for the cell biologist. PLoS Comput Biol 2011;7:e1002217. [PMID: 22022256 PMCID: PMC3192815 DOI: 10.1371/journal.pcbi.1002217] [Citation(s) in RCA: 146] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2011] [Accepted: 08/17/2011] [Indexed: 01/27/2023]  Open
10
Huerta-Cepas J, Dopazo J, Huynen MA, Gabaldón T. Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication. Brief Bioinform 2011;12:442-8. [PMID: 21515902 DOI: 10.1093/bib/bbr022] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
11
Hase T, Niimura Y, Tanaka H. Difference in gene duplicability may explain the difference in overall structure of protein-protein interaction networks among eukaryotes. BMC Evol Biol 2010;10:358. [PMID: 21087510 PMCID: PMC2994879 DOI: 10.1186/1471-2148-10-358] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2010] [Accepted: 11/18/2010] [Indexed: 11/19/2022]  Open
12
Tian X, Pascal G, Monget P. Evolution and functional divergence of NLRP genes in mammalian reproductive systems. BMC Evol Biol 2009;9:202. [PMID: 19682372 PMCID: PMC2735741 DOI: 10.1186/1471-2148-9-202] [Citation(s) in RCA: 125] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2009] [Accepted: 08/14/2009] [Indexed: 12/31/2022]  Open
13
Hoogewijs D, De Henau S, Dewilde S, Moens L, Couvreur M, Borgonie G, Vinogradov SN, Roy SW, Vanfleteren JR. The Caenorhabditis globin gene family reveals extensive nematode-specific radiation and diversification. BMC Evol Biol 2008;8:279. [PMID: 18844991 PMCID: PMC2576238 DOI: 10.1186/1471-2148-8-279] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2008] [Accepted: 10/09/2008] [Indexed: 01/27/2023]  Open
14
Woody OZ, Doxey AC, McConkey BJ. Assessing the evolution of gene expression using microarray data. Evol Bioinform Online 2008;4:139-52. [PMID: 19204814 PMCID: PMC2614203 DOI: 10.4137/ebo.s628] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]  Open
15
Construction, visualisation, and clustering of transcription networks from microarray expression data. PLoS Comput Biol 2007;3:2032-42. [PMID: 17967053 PMCID: PMC2041979 DOI: 10.1371/journal.pcbi.0030206] [Citation(s) in RCA: 198] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2007] [Accepted: 09/05/2007] [Indexed: 12/20/2022]  Open
16
Liu Z, Adams KL. Expression partitioning between genes duplicated by polyploidy under abiotic stress and during organ development. Curr Biol 2007;17:1669-74. [PMID: 17825563 DOI: 10.1016/j.cub.2007.08.030] [Citation(s) in RCA: 125] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2007] [Revised: 07/24/2007] [Accepted: 08/12/2007] [Indexed: 02/01/2023]
17
Liang H, Li WH. Gene essentiality, gene duplicability and protein connectivity in human and mouse. Trends Genet 2007;23:375-8. [PMID: 17512629 DOI: 10.1016/j.tig.2007.04.005] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2006] [Revised: 02/16/2007] [Accepted: 04/25/2007] [Indexed: 11/28/2022]
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