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MacLaren JA. Looking back over the shoulder: New insights on the unique scapular anatomy of the tapir (Perissodactyla: Tapiridae). Anat Rec (Hoboken) 2024; 307:2121-2138. [PMID: 37966173 DOI: 10.1002/ar.25352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 11/03/2023] [Accepted: 11/05/2023] [Indexed: 11/16/2023]
Abstract
The musculoskeletal anatomy of the shoulder of many ungulates has been inferred from veterinary model taxa, with uniformity in muscle arrangements and attachment sites often assumed. In this study, I investigated the muscular and osteological anatomy of tapirs and their relatives (Perissodactyla: Tapiroidea), using a combination of gross dissection and digital imaging (photography and laser surface scanning). Dissections of three modern tapir species revealed that the m. infraspinatus originates from both supraspinous and infraspinous fossae for all species, lying on both sides of the distal scapular spine. The epimysial border between the m. supraspinatus and m. infraspinatus origin sites are marked in all species by an ossified ridge, sometimes extending the length of the scapular spine. This "supraspinous ridge" is clearly visible on the scapular surface of both modern and extinct Tapirus scapulae; however, the ridge does not appear present in any non-Tapirus tapiroids examined (e.g., Helaletes, Nexuotapirus), nor in other perissodactyls or artiodactyls. Moreover, the ridge exhibits a clearly distinct morphology in Tapirus indicus compared to all other Tapirus species examined. Combined, these findings indicate that the presence and position of the "supraspinous ridge" may represent a robust phylogenetic character for reconstructing relationships within tapiroids. Unfortunately, any functional locomotor outcomes or benefits of the m. infraspinatus straddling the scapular spine remains elusive. This study represents a firm reminder for anatomists, veterinarians, and paleontologists to (where possible) look beyond veterinary model systems when inferring musculoskeletal form or function in non-model organisms.
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Affiliation(s)
- Jamie A MacLaren
- Department of Biology, Universiteit Antwerpen, Wilrijk, Antwerp, Belgium
- Evolution & Diversity Dynamics Lab, UR Geology, Université de Liège, Liège, Belgium
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2
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Unterauer EM, Shetab Boushehri S, Jevdokimenko K, Masullo LA, Ganji M, Sograte-Idrissi S, Kowalewski R, Strauss S, Reinhardt SCM, Perovic A, Marr C, Opazo F, Fornasiero EF, Jungmann R. Spatial proteomics in neurons at single-protein resolution. Cell 2024; 187:1785-1800.e16. [PMID: 38552614 DOI: 10.1016/j.cell.2024.02.045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 11/28/2023] [Accepted: 02/29/2024] [Indexed: 04/02/2024]
Abstract
To understand biological processes, it is necessary to reveal the molecular heterogeneity of cells by gaining access to the location and interaction of all biomolecules. Significant advances were achieved by super-resolution microscopy, but such methods are still far from reaching the multiplexing capacity of proteomics. Here, we introduce secondary label-based unlimited multiplexed DNA-PAINT (SUM-PAINT), a high-throughput imaging method that is capable of achieving virtually unlimited multiplexing at better than 15 nm resolution. Using SUM-PAINT, we generated 30-plex single-molecule resolved datasets in neurons and adapted omics-inspired analysis for data exploration. This allowed us to reveal the complexity of synaptic heterogeneity, leading to the discovery of a distinct synapse type. We not only provide a resource for researchers, but also an integrated acquisition and analysis workflow for comprehensive spatial proteomics at single-protein resolution.
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Affiliation(s)
- Eduard M Unterauer
- Max Planck Institute of Biochemistry, Planegg, Germany; Faculty of Physics and Center for NanoScience, Ludwig-Maximilians-Universität, Munich, Germany
| | - Sayedali Shetab Boushehri
- Institute of AI for Health, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany; Data & Analytics, Roche Pharma Research and Early Development, Roche Innovation Center Munich, Munich, Germany; Department of Mathematics, Technical University of Munich, Munich, Germany
| | - Kristina Jevdokimenko
- Institute of Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany
| | | | - Mahipal Ganji
- Max Planck Institute of Biochemistry, Planegg, Germany; Department of Biochemistry, Indian Institute of Science, Bangalore, India
| | - Shama Sograte-Idrissi
- Institute of Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, Göttingen, Germany
| | - Rafal Kowalewski
- Max Planck Institute of Biochemistry, Planegg, Germany; Faculty of Physics and Center for NanoScience, Ludwig-Maximilians-Universität, Munich, Germany
| | - Sebastian Strauss
- Max Planck Institute of Biochemistry, Planegg, Germany; Faculty of Physics and Center for NanoScience, Ludwig-Maximilians-Universität, Munich, Germany
| | - Susanne C M Reinhardt
- Max Planck Institute of Biochemistry, Planegg, Germany; Faculty of Physics and Center for NanoScience, Ludwig-Maximilians-Universität, Munich, Germany
| | - Ana Perovic
- Max Planck Institute of Biochemistry, Planegg, Germany
| | - Carsten Marr
- Institute of AI for Health, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany; Department of Mathematics, Technical University of Munich, Munich, Germany
| | - Felipe Opazo
- Institute of Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, Göttingen, Germany; NanoTag Biotechnologies GmbH, Göttingen, Germany
| | - Eugenio F Fornasiero
- Institute of Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany; Department of Life Sciences, University of Trieste, Trieste, Italy.
| | - Ralf Jungmann
- Max Planck Institute of Biochemistry, Planegg, Germany; Faculty of Physics and Center for NanoScience, Ludwig-Maximilians-Universität, Munich, Germany.
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3
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Muller A, Sharon G, Grosman L. Automatic analysis of the continuous edges of stone tools reveals fundamental handaxe variability. Sci Rep 2024; 14:7422. [PMID: 38548775 PMCID: PMC10978895 DOI: 10.1038/s41598-024-57450-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Accepted: 03/18/2024] [Indexed: 04/01/2024] Open
Abstract
The edges of stone tools have significant technological and functional implications. The nature of these edges-their sharpness, whether they are concave or convex, and their asymmetry-reflect how they were made and how they could be used. Similarly, blunt portions of a tool's perimeter hint at how they could have been grasped or hafted and in which directions force could be applied. However, due to the difficulty in accurately measuring the complex 3D geometry of tool edges with traditional methods, their attributes are often overlooked. When they are analyzed, they have traditionally been assessed with visual qualitative categories or unreliable physical measurements. We introduce new computational 3D methods for automatically and repeatably measuring key attributes of stone tool edges. These methods allow us to automatically identify the 3D perimeter of tools, segment this perimeter according to changes in edge angles, and measure these discrete edge segments with a range of metrics. We test this new computational toolkit on a large sample of 3D models of handaxes from the later Acheulean of the southern Levant. Despite these handaxes being otherwise technologically and morphologically similar, we find marked differences in the amount of knapped outline, edge angle, and the concavity of their edges. We find many handaxes possess blunt portions of perimeter, suitable for grasping, and some handaxes even possess more than one discrete sharp edge. Among our sample, sites with longer occupations and more diverse toolkits possessed handaxes with more diverse edges. Above all, this paper offers new methods for computing the complex 3D geometry of stone tool edges that could be applied to any number of artifact types. These methods are fully automated, allowing the analysis and visualization of entire assemblages.
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Affiliation(s)
- Antoine Muller
- Computational Archaeology Laboratory, Institute of Archaeology, Hebrew University of Jerusalem, Jerusalem, Israel.
| | - Gonen Sharon
- Multidisciplinary Studies, Tel-Hai College, East Campus, Upper Galilee, Israel
| | - Leore Grosman
- Computational Archaeology Laboratory, Institute of Archaeology, Hebrew University of Jerusalem, Jerusalem, Israel
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4
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Winn-Nuñez ET, Witt H, Bhaskar D, Huang RY, Reichner JS, Wong IY, Crawford L. Generative modeling of biological shapes and images using a probabilistic α-shape sampler. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.09.574919. [PMID: 38260340 PMCID: PMC10802457 DOI: 10.1101/2024.01.09.574919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
Abstract
Understanding morphological variation is an important task in many areas of computational biology. Recent studies have focused on developing computational tools for the task of sub-image selection which aims at identifying structural features that best describe the variation between classes of shapes. A major part in assessing the utility of these approaches is to demonstrate their performance on both simulated and real datasets. However, when creating a model for shape statistics, real data can be difficult to access and the sample sizes for these data are often small due to them being expensive to collect. Meanwhile, the current landscape of generative models for shapes has been mostly limited to approaches that use black-box inference-making it difficult to systematically assess the power and calibration of sub-image models. In this paper, we introduce the α -shape sampler: a probabilistic framework for generating realistic 2D and 3D shapes based on probability distributions which can be learned from real data. We demonstrate our framework using proof-of-concept examples and in two real applications in biology where we generate (i) 2D images of healthy and septic neutrophils and (ii) 3D computed tomography (CT) scans of primate mandibular molars. The α -shape sampler R package is open-source and can be downloaded at https://github.com/lcrawlab/ashapesampler.
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Affiliation(s)
| | - Hadley Witt
- Graduate Program in Pathobiology, Brown University, Providence, RI, USA
- Division of Surgical Research, Department of Surgery, Rhode Island Hospital, Providence, RI, USA
| | | | - Ryan Y. Huang
- Department of Computer Science, Brown University, Providence, RI USA
| | - Jonathan S. Reichner
- Graduate Program in Pathobiology, Brown University, Providence, RI, USA
- Division of Surgical Research, Department of Surgery, Rhode Island Hospital, Providence, RI, USA
| | - Ian Y. Wong
- Graduate Program in Pathobiology, Brown University, Providence, RI, USA
- School of Engineering, Legoretta Cancer Center, Brown University, Providence, RI USA
| | - Lorin Crawford
- Microsoft Research, Cambridge, MA, USA
- Department of Biostatistics, Brown University, Providence, RI, USA
- Center for Computational Molecular Biology, Brown University, Providence, RI, USA
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Daniels J, Sainz G, Katija K. New Method for Rapid 3D Reconstruction of Semi-Transparent Underwater Animals and Structures. Integr Org Biol 2023; 5:obad023. [PMID: 37521145 PMCID: PMC10372866 DOI: 10.1093/iob/obad023] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 04/20/2023] [Indexed: 08/01/2023] Open
Abstract
Morphological features are the primary identifying properties of most animals and key to many comparative physiological studies, yet current techniques for preservation and documentation of soft-bodied marine animals are limited in terms of quality and accessibility. Digital records can complement physical specimens, with a wide array of applications ranging from species description to kinematics modeling, but options are lacking for creating models of soft-bodied semi-transparent underwater animals. We developed a lab-based technique that can live-scan semi-transparent, submerged animals, and objects within seconds. To demonstrate the method, we generated full three-dimensional reconstructions (3DRs) of an object of known dimensions for verification, as well as two live marine animals-a siphonophore and an amphipod-allowing detailed measurements on each. Techniques like these pave the way for faster data capture, integrative and comparative quantitative approaches, and more accessible collections of fragile and rare biological samples.
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Affiliation(s)
| | - Giovanna Sainz
- Monterey Bay Aquarium Research Institute, Moss Landing, CA, 95039, USA
| | - Kakani Katija
- Monterey Bay Aquarium Research Institute, Moss Landing, CA, 95039, USA
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Scholaert M, Houmadi R, Martin J, Serhan N, Tauber M, Braun E, Basso L, Merle E, Descargues P, Viguier M, Lesort C, Chaput B, Kanitakis J, Jullien D, Livideanu CB, Lamant L, Pagès E, Gaudenzio N. 3D deconvolution of human skin immune architecture with Multiplex Annotated Tissue Imaging System. SCIENCE ADVANCES 2023; 9:eadf9491. [PMID: 37285432 DOI: 10.1126/sciadv.adf9491] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Accepted: 05/02/2023] [Indexed: 06/09/2023]
Abstract
Routine clinical assays, such as conventional immunohistochemistry, often fail to resolve the regional heterogeneity of complex inflammatory skin conditions. We introduce MANTIS (Multiplex Annotated Tissue Imaging System), a flexible analytic pipeline compatible with routine practice, specifically designed for spatially resolved immune phenotyping of the skin in experimental or clinical samples. On the basis of phenotype attribution matrices coupled to α-shape algorithms, MANTIS projects a representative digital immune landscape while enabling automated detection of major inflammatory clusters and concomitant single-cell data quantification of biomarkers. We observed that severe pathological lesions from systemic lupus erythematosus, Kawasaki syndrome, or COVID-19-associated skin manifestations share common quantitative immune features while displaying a nonrandom distribution of cells with the formation of disease-specific dermal immune structures. Given its accuracy and flexibility, MANTIS is designed to solve the spatial organization of complex immune environments to better apprehend the pathophysiology of skin manifestations.
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Affiliation(s)
- Manon Scholaert
- Toulouse Institute for Infectious and Inflammatory Diseases (Infinity), INSERM UMR1291, CNRS UMR5051, and University Toulouse III, Toulouse, France
- Genoskin SAS, Toulouse, France
| | - Raissa Houmadi
- Toulouse Institute for Infectious and Inflammatory Diseases (Infinity), INSERM UMR1291, CNRS UMR5051, and University Toulouse III, Toulouse, France
| | - Jeremy Martin
- Toulouse Institute for Infectious and Inflammatory Diseases (Infinity), INSERM UMR1291, CNRS UMR5051, and University Toulouse III, Toulouse, France
| | - Nadine Serhan
- Toulouse Institute for Infectious and Inflammatory Diseases (Infinity), INSERM UMR1291, CNRS UMR5051, and University Toulouse III, Toulouse, France
| | - Marie Tauber
- Toulouse Institute for Infectious and Inflammatory Diseases (Infinity), INSERM UMR1291, CNRS UMR5051, and University Toulouse III, Toulouse, France
- Department of Allergology and Clinical Immunology, Hospices Civils de Lyon, Centre Hospitalier Lyon Sud, Pierre-Bénite, France
- Centre International de Recherche en Infectiologie (CIRI; Team Immunology of Skin Allergy and Vaccination), Inserm U1111, Université Claude Bernard Lyon 1, and CNRS, UMR5308, Lyon, France
- ENS de Lyon, F-69007 Lyon, France
| | | | - Lilian Basso
- Toulouse Institute for Infectious and Inflammatory Diseases (Infinity), INSERM UMR1291, CNRS UMR5051, and University Toulouse III, Toulouse, France
| | | | | | - Manuelle Viguier
- Dermatology Department, Hôpital Robert Debré, EA7509 IRMAIC, Université Reims Champagne Ardenne, Reims, France
| | - Cécile Lesort
- Centre International de Recherche en Infectiologie (CIRI; Team Immunology of Skin Allergy and Vaccination), Inserm U1111, Université Claude Bernard Lyon 1, and CNRS, UMR5308, Lyon, France
- Department of Dermatology Edouard Herriot Hospital, Hospices Civils de Lyon, Lyon, France
| | - Benoît Chaput
- Department of Plastic, Reconstructive and Aesthetic Surgery, Rangueil Hospital, CHU Toulouse, Toulouse, France
| | - Jean Kanitakis
- Centre International de Recherche en Infectiologie (CIRI; Team Immunology of Skin Allergy and Vaccination), Inserm U1111, Université Claude Bernard Lyon 1, and CNRS, UMR5308, Lyon, France
- Department of Dermatology Edouard Herriot Hospital, Hospices Civils de Lyon, Lyon, France
| | - Denis Jullien
- Centre International de Recherche en Infectiologie (CIRI; Team Immunology of Skin Allergy and Vaccination), Inserm U1111, Université Claude Bernard Lyon 1, and CNRS, UMR5308, Lyon, France
- Department of Dermatology Edouard Herriot Hospital, Hospices Civils de Lyon, Lyon, France
| | - Cristina Bulai Livideanu
- Toulouse Institute for Infectious and Inflammatory Diseases (Infinity), INSERM UMR1291, CNRS UMR5051, and University Toulouse III, Toulouse, France
- Department of Dermatology, Paul Sabatier University, Toulouse University Hospital, Toulouse, France
| | - Laurence Lamant
- Department of Pathology, Institut Universitaire du Cancer Toulouse Oncopole, avenue Joliot-Curie, 31049 Toulouse, France
| | | | - Nicolas Gaudenzio
- Toulouse Institute for Infectious and Inflammatory Diseases (Infinity), INSERM UMR1291, CNRS UMR5051, and University Toulouse III, Toulouse, France
- Genoskin SAS, Toulouse, France
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Clear E, Grant R, Gardiner J, Brassey C. Baculum shape complexity correlates to metrics of post-copulatory sexual selection in Musteloidea. J Morphol 2023; 284:e21572. [PMID: 36806148 PMCID: PMC10952176 DOI: 10.1002/jmor.21572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 02/14/2023] [Accepted: 02/18/2023] [Indexed: 02/22/2023]
Abstract
The penis bone, or baculum, is present in many orders of mammals, although its function is still relatively unknown, mainly due to the challenges with studying the baculum in vivo. Suggested functions include increasing vaginal friction, prolonging intromission and inducing ovulation. Since it is difficult to study baculum function directly, functional morphology can give important insights. Shape complexity techniques, in particular, are likely to offer a useful metric of baculum morphology, especially since finding homologous landmarks on such a structure is challenging. This study focuses on measuring baculum shape complexity in the Musteloidea-a large superfamily spanning a range of body sizes with well-developed, qualitatively diverse bacula. We compared two shape complexity metrics-alpha shapes and ariaDNE and conducted analyses over a range of six different coefficients, or bandwidths, in 32 species of Musteloidea. Overall, we found that shape complexity, especially at the baculum distal tip, is associated with intromission duration using both metrics. These complexities can include hooks, bifurcations and other additional projections. In addition, alpha shapes complexity was also associated with relative testes mass. These results suggest that post-copulatory mechanisms of sexual selection are probably driving the evolution of more complex-shaped bacula tips in Musteloidea and are likely to be especially involved in increasing intromission duration during copulation.
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Affiliation(s)
- Emma Clear
- Faculty of Science and EngineeringManchester Metropolitan UniversityManchesterUK
| | - Robyn Grant
- Faculty of Science and EngineeringManchester Metropolitan UniversityManchesterUK
| | - James Gardiner
- Institute of Life Course and Medical SciencesThe University of LiverpoolLiverpoolUK
| | - Charlotte Brassey
- Faculty of Science and EngineeringManchester Metropolitan UniversityManchesterUK
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8
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Zhu Y, Li D, Fan J, Zhang H, Eichhorn MP, Wang X, Yun T. A reinterpretation of the gap fraction of tree crowns from the perspectives of computer graphics and porous media theory. FRONTIERS IN PLANT SCIENCE 2023; 14:1109443. [PMID: 36814756 PMCID: PMC9939530 DOI: 10.3389/fpls.2023.1109443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Accepted: 01/09/2023] [Indexed: 06/18/2023]
Abstract
The gap fraction (GF) of vegetative canopies is an important property related to the contained bulk of reproductive elements and woody facets within the tree crown volume. This work was developed from the perspectives of porous media theory and computer graphics techniques, considering the vegetative elements in the canopy as a solid matrix and treating the gaps between them as pores to guide volume-based GFvol calculations. Woody components and individual leaves were extracted from terrestrial laser scanning data. The concept of equivalent leaf thickness describing the degrees of leaf curling and drooping was proposed to construct hexagonal prisms properly enclosing the scanned points of each leaf, and cylinder models were adopted to fit each branch segment, enabling the calculation of the equivalent leaf and branch volumes within the crown. Finally, the volume-based GFvol of the tree crown following the definition of the void fraction in porous media theory was calculated as one minus the ratio of the total plant leaf and branch volume to the canopy volume. This approach was tested on five tree species and a forest plot with variable canopy architecture, yielding an estimated maximum volume-based GFvol of 0.985 for a small crepe myrtle and a minimal volume-based GFvol of 0.953 for a sakura tree. The 3D morphology of each compositional element in the tree canopy was geometrically defined and the canopy was considered a porous structure to conduct GFvol calculations based on multidisciplinary theory.
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Affiliation(s)
- Yunfeng Zhu
- School of Information Science and Technology, Nanjing Forestry University, Nanjing, China
| | - Dongni Li
- School of Information Science and Technology, Nanjing Forestry University, Nanjing, China
| | - Jiangchuan Fan
- National Engineering Research Center for Information Technology in Agriculture, Beijing, China
| | - Huaiqing Zhang
- Research Institute of Forestry Resource Information Techniques, Chinese Academy of Forestry, Beijing, China
| | - Markus P. Eichhorn
- School of Biological, Earth and Environmental Sciences, University College Cork, Cork, Ireland
- Environmental Research Institute, University College Cork, Cork, Ireland
| | - Xiangjun Wang
- Rubber Research Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Ting Yun
- School of Information Science and Technology, Nanjing Forestry University, Nanjing, China
- Forestry College, Nanjing Forestry University, Nanjing, China
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Varajão de Latorre D. Fossil bacula of five species of Borophaginae (Family: Canidae): Implications for their reproductive biology. PLoS One 2023; 18:e0280327. [PMID: 36649261 PMCID: PMC9844895 DOI: 10.1371/journal.pone.0280327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Accepted: 12/27/2022] [Indexed: 01/18/2023] Open
Abstract
The baculum of mammals offers the opportunity to study the reproductive biology of extinct species given that it is a fossilizable part of the male genitalia and that its size and shape correlate with several aspects of the reproductive biology of extant mammals. Fossil bacula, however, are rare. Currently, bacula have been described from only two extinct species of canids, one from the subfamily Caninae and the other from the extinct subfamily Hesperocyoninae. Here, I describe the bacula of five extinct species of Borophaginae, each of which was found with other skeletal elements that have enabled identification to the species level. Two specimens (Aelurodon ferox and Aelurodon stirtoni) are largely complete, while the baculum from Carpocyon compressus is complete but still embedded in matrix that obscures some of its features. The bacula of Paratomarctus euthos and Desmocyon thomsoni are incomplete, but they provide useful information nonetheless. These borophagine bacula are similar to extant canines in being robust, having a urethral groove, and a simple distal end. These features suggest that the Borophaginae had long-lasting copulation and possibly spontaneous ovulation, similar to the extant canines. However, unlike the straight baculum of extant canines, borophagine bacula are ventrally curved (arched), which is also observed in the hesperocyonine baculum. The implication of this curvature for the reproductive biology of these animals remains unknown.
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Affiliation(s)
- Daniel Varajão de Latorre
- Department of Integrative Biology, University of California, Berkeley, Berkeley, California, United States of America
- University of California Museum of Paleontology, Berkeley, California, United States of America
- * E-mail:
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10
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Elliott TL, Zedek F, Barrett RL, Bruhl JJ, Escudero M, Hroudová Z, Joly S, Larridon I, Luceño M, Márquez-Corro JI, Martín-Bravo S, Muasya AM, Šmarda P, Thomas WW, Wilson KL, Bureš P. Chromosome size matters: genome evolution in the cyperid clade. ANNALS OF BOTANY 2022; 130:999-1014. [PMID: 36342743 PMCID: PMC9851305 DOI: 10.1093/aob/mcac136] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Accepted: 11/03/2022] [Indexed: 05/08/2023]
Abstract
BACKGROUND AND AIMS While variation in genome size and chromosome numbers and their consequences are often investigated in plants, the biological relevance of variation in chromosome size remains poorly known. Here, we examine genome and mean chromosome size in the cyperid clade (families Cyperaceae, Juncaceae and Thurniaceae), which is the largest vascular plant lineage with predominantly holocentric chromosomes. METHODS We measured genome size in 436 species of cyperids using flow cytometry, and augment these data with previously published datasets. We then separately compared genome and mean chromosome sizes (2C/2n) amongst the major lineages of cyperids and analysed how these two genomic traits are associated with various environmental factors using phylogenetically informed methods. KEY RESULTS We show that cyperids have the smallest mean chromosome sizes recorded in seed plants, with a large divergence between the smallest and largest values. We found that cyperid species with smaller chromosomes have larger geographical distributions and that there is a strong inverse association between mean chromosome size and number across this lineage. CONCLUSIONS The distinct patterns in genome size and mean chromosome size across the cyperids might be explained by holokinetic drive. The numerous small chromosomes might function to increase genetic diversity in this lineage where crossovers are limited during meiosis.
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Affiliation(s)
- Tammy L Elliott
- Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic
| | - František Zedek
- Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic
| | - Russell L Barrett
- National Herbarium of New South Wales, Australian Institute of Botanical Science, Australian Botanic Garden, Locked Bag 6002, Mount Annan, New South Wales 2567, Australia
| | - Jeremy J Bruhl
- Botany and N.C.W. Beadle Herbarium, School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia
| | - Marcial Escudero
- Department of Plant Biology and Ecology, University of Seville, Reina Mercedes 6, 41012 Seville, Spain
| | - Zdenka Hroudová
- Institute of Botany of the Czech Academy of Sciences, 252 43 Průhonice, Czech Republic
- National Museum, Department of Botany, Cirkusová 1740, 193 00 Prague 9, Czech Republic
| | - Simon Joly
- Montreal Botanical Garden, 4101, Sherbrooke East, Montreal, QC H1X 2B2, Canada
- Institut de recherche en biologie végétale, Département de sciences biologiques, Université de Montréal, 4101, Sherbrooke East, Montreal, QC H1X 2B2, Canada
| | - Isabel Larridon
- Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK
- Systematic and Evolutionary Botany Lab, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium
| | - Modesto Luceño
- Botany Area, Department of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, ctra. de Utrera km. 1, 41013, Seville, Spain
| | - José Ignacio Márquez-Corro
- Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK
- Botany Area, Department of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, ctra. de Utrera km. 1, 41013, Seville, Spain
| | - Santiago Martín-Bravo
- Botany Area, Department of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, ctra. de Utrera km. 1, 41013, Seville, Spain
| | - A Muthama Muasya
- Bolus Herbarium, Department of Biological Sciences, University of Cape Town, Private Bag X3, Rondebosch, Cape Town 7701, South Africaand
| | - Petr Šmarda
- Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic
| | | | - Karen L Wilson
- National Herbarium of New South Wales, Australian Institute of Botanical Science, Australian Botanic Garden, Locked Bag 6002, Mount Annan, New South Wales 2567, Australia
| | - Petr Bureš
- Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic
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11
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Hewes AE, Cuban D, Groom DJE, Sargent AJ, Beltrán DF, Rico-Guevara A. Variable evidence for convergence in morphology and function across avian nectarivores. J Morphol 2022; 283:1483-1504. [PMID: 36062802 DOI: 10.1002/jmor.21513] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 08/20/2022] [Accepted: 08/24/2022] [Indexed: 01/19/2023]
Abstract
Nectar-feeding birds provide an excellent system in which to examine form-function relationships over evolutionary time. There are many independent origins of nectarivory in birds, and nectar feeding is a lifestyle with many inherent biophysical constraints. We review the morphology and function of the feeding apparatus, the locomotor apparatus, and the digestive and renal systems across avian nectarivores with the goals of synthesizing available information and identifying the extent to which different aspects of anatomy have morphologically and functionally converged. In doing so, we have systematically tabulated the occurrence of putative adaptations to nectarivory across birds and created what is, to our knowledge, the first comprehensive summary of adaptations to nectarivory across body systems and taxa. We also provide the first phylogenetically informed estimate of the number of times nectarivory has evolved within Aves. Based on this synthesis of existing knowledge, we identify current knowledge gaps and provide suggestions for future research questions and methods of data collection that will increase our understanding of the distribution of adaptations across bodily systems and taxa, and the relationship between those adaptations and ecological and evolutionary factors. We hope that this synthesis will serve as a landmark for the current state of the field, prompting investigators to begin collecting new data and addressing questions that have heretofore been impossible to answer about the ecology, evolution, and functional morphology of avian nectarivory.
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Affiliation(s)
- Amanda E Hewes
- Department of Biology, University of Washington, Seattle, Washington, USA.,Burke Museum of Natural History and Culture, Seattle, Washington, USA
| | - David Cuban
- Department of Biology, University of Washington, Seattle, Washington, USA.,Burke Museum of Natural History and Culture, Seattle, Washington, USA
| | - Derrick J E Groom
- Department of Biology, San Francisco State University, San Francisco, California, USA
| | - Alyssa J Sargent
- Department of Biology, University of Washington, Seattle, Washington, USA.,Burke Museum of Natural History and Culture, Seattle, Washington, USA
| | - Diego F Beltrán
- Department of Biology, University of Washington, Seattle, Washington, USA
| | - Alejandro Rico-Guevara
- Department of Biology, University of Washington, Seattle, Washington, USA.,Burke Museum of Natural History and Culture, Seattle, Washington, USA
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12
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Pamfilie AM, Espinal MD, Vitek NS. Quantifying shell patterning helps identify species of Trionychidae. Anat Rec (Hoboken) 2022; 306:1452-1464. [PMID: 36094350 DOI: 10.1002/ar.25064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 08/18/2022] [Accepted: 08/24/2022] [Indexed: 11/12/2022]
Abstract
Softshell turtles (Trionychidae) display characteristic pits and ridges, or "sculpturing," on the bony carapace. Variation in sculpturing pattern may be useful in classifying fossilized shell fragments. Although past attempts could discern qualitative differences in certain best-case scenarios, many early taxonomic uses of sculpturing traits have been reevaluated as unreliable in the face of intraspecific variation. The potential of sculpturing to contain consistently reliable, quantitative, taxonomically informative traits remains underexplored. Here, we revisit this idea by quantifying trionychid shell patterning with topographic measurement techniques more commonly applied to nonhomologous quantification of mammalian teeth and geographic surface topography. We assess potential sources of variation and accuracy of these metrics for species identification. Carapaces of extant specimens used in this study included members of the species Apalone ferox, Apalone spinifera, and Amyda cartilaginea and were obtained from the herpetology collections of the Florida Museum of Natural History. 3D scans of shells were systematically sampled to create digital "fragments." These fragments were quantified using three topographic measurements: Dirichlet Normal Energy (DNE), Relief Index (RFI), and Orientation Patch Count Rotated (OPCR). A nested MANOVA suggests there is significant variation at the species, individual, and carapace location levels of analysis. Linear discriminant analysis correctly predicts a sample's species identity from DNE, RFI, and OPCR 75.2% of the time. These promising results indicate that topographic measures may provide a method for identifying shell fragments that are currently identifiable only as Trionychidae indet. Future work should explore this approach in additional species and account for ontogenetic changes.
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Affiliation(s)
- Alexandra M Pamfilie
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York, USA
| | - Milka D Espinal
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York, USA
| | - Natasha S Vitek
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York, USA.,Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
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13
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Crown Structure Metrics to Generalize Aboveground Biomass Estimation Model Using Airborne Laser Scanning Data in National Park of Hainan Tropical Rainforest, China. FORESTS 2022. [DOI: 10.3390/f13071142] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Forest aboveground biomass (AGB) is an important indicator for characterizing forest ecosystem structures and functions. Therefore, how to effectively investigate forest AGB is a vital mission. Airborne laser scanning (ALS) has been demonstrated as an effective way to support investigation and operational applications among a wide range of applications in the forest inventory. Moreover, three-dimensional structure information relating to AGB can be acquired by airborne laser scanning. Many studies estimated AGB from variables that were extracted from point cloud data, but few of them took full advantage of variables related to tree crowns to estimate the AGB. In this study, the main objective was to evaluate and compare the capabilities of different metrics derived from point clouds obtained from ALS. Particularly, individual tree-based alpha-shape, along with other traditional and commonly used plot-level height and intensity metrics, have been used from airborne laser scanning data. We took the random forest and multiple stepwise linear regression to estimate the AGB. By comparing AGB estimates with field measurements, our results showed that the best approach is mixed metrics, and the best estimation model is random forest (R2 = 0.713, RMSE = 21.064 t/ha, MAE = 15.445 t/ha), which indicates that alpha-shape may be a good alternative method to improve AGB estimation accuracy. This method provides an effective solution for estimating aboveground biomass from airborne laser scanning.
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14
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Geometric goodness of fit measure to detect patterns in data point clouds. Comput Stat 2022. [DOI: 10.1007/s00180-022-01244-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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15
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Rozario AM, Morey A, Elliott C, Russ B, Whelan DR, Turner SJ, Bell TDM. 3D Single Molecule Super-Resolution Microscopy of Whole Nuclear Lamina. Front Chem 2022; 10:863610. [PMID: 35572104 PMCID: PMC9096160 DOI: 10.3389/fchem.2022.863610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 03/28/2022] [Indexed: 12/02/2022] Open
Abstract
Single molecule (SM) super-resolution microscopies bypass the diffraction limit of conventional optical techniques and provide excellent spatial resolutions in the tens of nanometers without overly complex microscope hardware. SM imaging using optical astigmatism is an efficient strategy for visualizing subcellular features in 3D with a z-range of up to ∼1 µm per acquisition. This approach however, places high demands on fluorophore brightness and photoswitching resilience meaning that imaging entire cell volumes in 3D using SM super-resolution remains challenging. Here we employ SM astigmatism together with multiplane acquisition to visualize the whole nuclear lamina of COS-7 and T cells in 3D. Nuclear lamina provides structural support to the nuclear envelope and participates in vital nuclear functions including internuclear transport, chromatin organization and gene regulation. Its position at the periphery of the nucleus provides a visible reference of the nuclear boundary and can be used to quantify the spatial distribution of intranuclear components such as histone modifications and transcription factors. We found Alexa Fluor 647, a popular photoswitchable fluorophore, remained viable for over an hour of continuous high laser power exposure, and provided sufficient brightness detectable up to 8 µm deep into a cell, allowing us to capture the entire nuclear lamina in 3D. Our approach provides sufficient super-resolution detail of nuclear lamina morphology to enable quantification of overall nuclear dimensions and local membrane features.
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Affiliation(s)
- Ashley M. Rozario
- School of Chemistry, Monash University, Clayton, VIC, Australia
- Department of Microbiology, Monash Biomedicine Discovery Institute, Clayton, VIC, Australia
| | - Alison Morey
- Department of Microbiology, Monash Biomedicine Discovery Institute, Clayton, VIC, Australia
| | - Cade Elliott
- School of Chemistry, Monash University, Clayton, VIC, Australia
| | - Brendan Russ
- Department of Microbiology, Monash Biomedicine Discovery Institute, Clayton, VIC, Australia
| | - Donna R. Whelan
- La Trobe Institute for Molecular Science, Bendigo, VIC, Australia
| | - Stephen J. Turner
- Department of Microbiology, Monash Biomedicine Discovery Institute, Clayton, VIC, Australia
- *Correspondence: Stephen J. Turner, ; Toby D. M. Bell,
| | - Toby D. M. Bell
- School of Chemistry, Monash University, Clayton, VIC, Australia
- *Correspondence: Stephen J. Turner, ; Toby D. M. Bell,
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16
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Over and beyond the Primate baubellum Surface: A “Jewel Bone” Shielded in Museums. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12042096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Computed Tomography (CT), mostly used in the medical field, has also recently been involved in Cultural Heritage studies, thanks to its efficiency and total non-invasiveness. Due to the large variety of sizes and compositions typical of Cultural Heritage objects, different X-ray sources, detectors, and setups are necessary to meet the different needs of various case studies. Here, we focus on the use of micro-CT to explore the morphology and shape of a small, neglected bone found inside the clitoris of non-human primates (the baubellum), which we obtained by accessing two prestigious primatological collections of the American Museum of Natural History (New York, NY, USA) and the National Museum of Natural History (Washington, DC, USA). Overcoming methodological limits imposed by the absence of homologous landmarks, we combined the use of the non-invasive 3D micro-CT and a recently released landmark-free shape analysis (the alpha-shape technique) to objectively describe and quantify the shape complexity of scanned primate baubella. Micro-CT provided high-resolution results, overcoming constraints linked to museum policy about non-disruptive sampling and preserving samples for future research. Finally, it proved appropriate as post-mortem sampling had no impact on protected wild primate populations.
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17
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Demirci N, Holland MA. Cortical thickness systematically varies with curvature and depth in healthy human brains. Hum Brain Mapp 2022; 43:2064-2084. [PMID: 35098606 PMCID: PMC8933257 DOI: 10.1002/hbm.25776] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Revised: 11/30/2021] [Accepted: 01/05/2022] [Indexed: 12/30/2022] Open
Abstract
Cortical thickness varies throughout the cortex in a systematic way. However, it is challenging to investigate the patterns of cortical thickness due to the intricate geometry of the cortex. The cortex has a folded nature both in radial and tangential directions which forms not only gyri and sulci but also tangential folds and intersections. In this article, cortical curvature and depth are used to characterize the spatial distribution of the cortical thickness with much higher resolution than conventional regional atlases. To do this, a computational pipeline was developed that is capable of calculating a variety of quantitative measures such as surface area, cortical thickness, curvature (mean curvature, Gaussian curvature, shape index, intrinsic curvature index, and folding index), and sulcal depth. By analyzing 501 neurotypical adult human subjects from the ABIDE‐I dataset, we show that cortex has a very organized structure and cortical thickness is strongly correlated with local shape. Our results indicate that cortical thickness consistently increases along the gyral–sulcal spectrum from concave to convex shape, encompassing the saddle shape along the way. Additionally, tangential folds influence cortical thickness in a similar way as gyral and sulcal folds; outer folds are consistently thicker than inner.
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Affiliation(s)
- Nagehan Demirci
- Bioengineering Graduate Program University of Notre Dame Notre Dame Indiana USA
| | - Maria A. Holland
- Bioengineering Graduate Program University of Notre Dame Notre Dame Indiana USA
- Department of Aerospace and Mechanical Engineering University of Notre Dame Notre Dame Indiana USA
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18
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Jiang M, Olarte-Plata JD, Bresme F. Heterogeneous thermal conductance of nanoparticle–fluid interfaces: An atomistic nodal approach. J Chem Phys 2022; 156:044701. [DOI: 10.1063/5.0074912] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Affiliation(s)
- Mingxuan Jiang
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, London W12 0BZ, United Kingdom
| | - Juan D. Olarte-Plata
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, London W12 0BZ, United Kingdom
| | - Fernando Bresme
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, London W12 0BZ, United Kingdom
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19
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Reichert J, Arnold AL, Hammer N, Miller IB, Rades M, Schubert P, Ziegler M, Wilke T. Reef-building corals act as long-term sink for microplastic. GLOBAL CHANGE BIOLOGY 2022; 28:33-45. [PMID: 34710272 DOI: 10.1111/gcb.15920] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 09/23/2021] [Accepted: 09/26/2021] [Indexed: 06/13/2023]
Abstract
The pollution of the marine environment with microplastics is pervasive. However, microplastic concentrations in the seawater are lower than the number of particles entering the oceans, suggesting that plastic particles accumulate in environmental sinks. Yet, the exact long-term sinks related to the "missing plastic" phenomenon are barely explored. Sediments in nearshore biogenic habitats are known to trap large amounts of microplastics, but also the three-dimensional structures of coral reefs might serve as unique, living long-term sinks. The main framework builders, reef-building corals, have been shown to ingest and overgrow microplastics, potentially leading to a deposition of particles in reef structures. However, little is known about the number of deposited particles and the underlying processes determining the permanent deposition in the coral skeletons. To test whether corals may act as living long-term sink for microplastic, we exposed four reef-building coral species to polyethylene microplastics (200 particles L-1 ) in an 18-month laboratory experiment. We found microplastics in all treatment specimens, with low numbers of particles trapped in the coral tissue (up to 2 particles per cm2 ) and much higher numbers in the skeleton (up to 84 particles per cm3 ). The numbers of particles accumulated in the coral skeletons were mainly related to coral growth (i.e., skeletal growth in volume), suggesting that deposition is a regularly occurring stochastic process. We estimate that reef-building corals may remove 0.09%-2.82% of the bioavailable microplastics from tropical shallow-reef waters per year. Our study shows for the first time that microplastic particles accumulate permanently in a biological sink, helping to explain the "missing plastic" phenomenon. This highlights the importance of coral reefs for the ecological balance of the oceans and reinforces the need to protect them, not only to mitigate the effects of climate change but also to preserve their ecosystem services as long-term sink for microplastic.
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Affiliation(s)
- Jessica Reichert
- Department of Animal Ecology & Systematics, Justus Liebig University, Giessen, Germany
| | - Angelina L Arnold
- Department of Animal Ecology & Systematics, Justus Liebig University, Giessen, Germany
| | - Nils Hammer
- Department of Animal Ecology & Systematics, Justus Liebig University, Giessen, Germany
| | - Ingo B Miller
- Department of Animal Ecology & Systematics, Justus Liebig University, Giessen, Germany
| | - Marvin Rades
- Department of Animal Ecology & Systematics, Justus Liebig University, Giessen, Germany
| | - Patrick Schubert
- Department of Animal Ecology & Systematics, Justus Liebig University, Giessen, Germany
| | - Maren Ziegler
- Department of Animal Ecology & Systematics, Justus Liebig University, Giessen, Germany
| | - Thomas Wilke
- Department of Animal Ecology & Systematics, Justus Liebig University, Giessen, Germany
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20
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Aju D., Joseph SS. 3D Reconstruction Methods Purporting 3D Visualization and Volume Estimation of Brain Tumors. INTERNATIONAL JOURNAL OF E-COLLABORATION 2022. [DOI: 10.4018/ijec.290296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
This work proposes the Crust algorithm for 3D reconstruction of brain tumor, an effective mechanism in the visualization of tumors for presurgical planning, radiation dose calculation. Despite the promising performance of Crust algorithm in reconstruction of Stanford models, it has not yet been considered in 3D reconstruction of brain tumor. Validation of the results is done using the comparison of the 3D models from two cutting edge techniques namely the Marching Cube and the Alpha shape algorithm. The obtained result shows that Crust algorithm provides the brain tumor model with an average quality of triangle meshes ranging from 0.85 to 0.95. Concerning the visual realism, the quality of Crust algorithm models is higher on comparison to the other models. Precision of tumor volume measurement by convex hull method is analysed by repeatability and reproducibility. The standard deviations of repeatability were between 2.03 % and 3.97 %. The experimental results show that Linear Crust algorithm produces high quality meshes with average quality of equilateral triangles close to 1.
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Affiliation(s)
- Aju D.
- Vellore Institute of Technology, India
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21
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Zhang W, Song B, Bai X, Jia L, Song L, Guo J, Feng L. Versatile acoustic manipulation of micro-objects using mode-switchable oscillating bubbles: transportation, trapping, rotation, and revolution. LAB ON A CHIP 2021; 21:4760-4771. [PMID: 34632476 DOI: 10.1039/d1lc00628b] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Controllable on-chip multimodal manipulation of micro-objects in microfluidic devices is urgently required for enhancing the efficiency of potential biomedical applications. However, fixed design and driving models make it difficult to achieve switchable multifunction efficiently in a single device. In this study, a versatile bubble-based acoustofluidic device is proposed for multimodal manipulation of micro-objects in a biocompatible manner. Identical bubbles trapped over the bottom microcavities are made to flexibly switch between four different oscillatory motions by varying the applied frequency to generate corresponding modes of streaming patterns in the microchannel. Such regular modes enable stable transportation, trapping, 3D rotation, and circular revolution of the micro-objects, which were experimentally and numerically verified. The mode-switchable manipulations can be noninvasively applied to particles, cells, and organisms with different sizes, shapes, and quantities and can be controlled by key driving parameters. Moreover, 3D cell reconstruction is developed by applying the out-of-plane rotational mode and analyzed for illustration of cell surface morphology while quantifying reliably basic cell properties. Finally, a simple platform is established to integrate user-friendly function control and reconstruction analysis. The mode-switchable acoustofluidic device features a versatile, controllable, and contactless micro-object manipulation method, which provides an efficient solution for biomedical applications.
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Affiliation(s)
- Wei Zhang
- School of Mechanical Engineering & Automation, Beihang University, Beijing 100191, China.
| | - Bin Song
- School of Mechanical Engineering & Automation, Beihang University, Beijing 100191, China.
| | - Xue Bai
- School of Mechanical Engineering & Automation, Beihang University, Beijing 100191, China.
| | - Lina Jia
- School of Mechanical Engineering & Automation, Beihang University, Beijing 100191, China.
| | - Li Song
- School of Mechanical Engineering & Automation, Beihang University, Beijing 100191, China.
| | - Jingli Guo
- School of Mechanical Engineering & Automation, Beihang University, Beijing 100191, China.
| | - Lin Feng
- School of Mechanical Engineering & Automation, Beihang University, Beijing 100191, China.
- Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing 100083, China
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22
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Topologically Consistent Reconstruction for Complex Indoor Structures from Point Clouds. REMOTE SENSING 2021. [DOI: 10.3390/rs13193844] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Indoor structures are composed of ceilings, walls and floors that need to be modeled for a variety of applications. This paper proposes an approach to reconstructing models of indoor structures in complex environments. First, semantic pre-processing, including segmentation and occlusion construction, is applied to segment the input point clouds to generate semantic patches of structural primitives with uniform density. Then, a primitives extraction method with detected boundary is introduced to approximate both the mathematical surface and the boundary of the patches. Finally, a constraint-based model reconstruction is applied to achieve the final topologically consistent structural model. Under this framework, both the geometric and structural constraints are considered in a holistic manner to assure topologic regularity. Experiments were carried out with both synthetic and real-world datasets. The accuracy of the proposed method achieved an overall reconstruction quality of approximately 4.60 cm of root mean square error (RMSE) and 94.10% Intersection over Union (IoU) of the input point cloud. The development can be applied for structural reconstruction of various complex indoor environments.
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23
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McLean C, Garwood R, Brassey C. Assessing the patterns and drivers of shape complexity in the amblypygid pedipalp. Ecol Evol 2021; 11:10709-10719. [PMID: 34367607 PMCID: PMC8328453 DOI: 10.1002/ece3.7882] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Revised: 05/25/2021] [Accepted: 06/03/2021] [Indexed: 11/09/2022] Open
Abstract
Amblypygi is an arachnid order possessing a unique pair of spined pedipalps: appendages that perform in prey capture, courtship, and contest. Pedipalp length, hypothesized to be under sexual selection, varies markedly across amblypygid species, and pedipalp spination, thought to reflect selection for function in prey capture, also differs interspecifically. Differences in pedipalp shape between species may indicate that the relative strength of selection for prey capture and sexual selection vary across the group. However, interspecific differences in pedipalp shape have not been quantified, due to difficulties in identifying homologous features. For the first time, we quantify trends in amblypygid pedipalp shape complexity. We use elliptical Fourier analysis to quantify 2D complexity in pedipalp outlines across eleven species and six genera. We find that complexity significantly decreases as pedipalp length increases. This appears to be driven by relative spine length, suggesting that a trade-off exists between pedipalp length and spination. Furthermore, significant female-biased sexual dimorphism in shape complexity is present in the tibial segment of the amblypygid pedipalp. Our results provide novel insights into the drivers of amblypygid pedipalp evolution and suggest that a functional trade-off between performance in prey capture and other functions under sexual selection exist in this enigmatic structure.
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Affiliation(s)
- Callum McLean
- Department of Natural SciencesManchester Metropolitan UniversityManchesterUK
| | - Russell Garwood
- School of Earth and Environmental SciencesUniversity of ManchesterManchesterUK
- Earth Sciences DepartmentNatural History MuseumLondonUK
| | - Charlotte Brassey
- Department of Natural SciencesManchester Metropolitan UniversityManchesterUK
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24
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Orbach DN, Brassey CA, Gardiner JD, Brennan PLR. 3D genital shape complexity in female marine mammals. Ecol Evol 2021; 11:3210-3218. [PMID: 33841778 PMCID: PMC8019040 DOI: 10.1002/ece3.7269] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Revised: 12/17/2020] [Accepted: 01/12/2021] [Indexed: 11/06/2022] Open
Abstract
Comparisons of 3D shapes have recently been applied to diverse anatomical structures using landmarking techniques. However, discerning evolutionary patterns can be challenging for structures lacking homologous landmarks. We used alpha shape analyses to quantify vaginal shape complexity in 40 marine mammal specimens including cetaceans, pinnipeds, and sirenians. We explored phylogenetic signal and the potential roles of natural and sexual selection on vaginal shape evolution. Complexity scores were consistent with qualitative observations. Cetaceans had a broad range of alpha complexities, while pinnipeds were comparatively simple and sirenians were complex. Intraspecific variation was found. Three-dimensional surface heat maps revealed that shape complexity was driven by invaginations and protrusions of the vaginal wall. Phylogenetic signal was weak and metrics of natural selection (relative neonate size) and sexual selection (relative testes size, sexual size dimorphism, and penis morphology) did not explain vaginal complexity patterns. Additional metrics, such as penile shape complexity, may yield interesting insights into marine mammal genital coevolution. We advocate for the use of alpha shapes to discern patterns of evolution that would otherwise not be possible in 3D anatomical structures lacking homologous landmarks.
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Affiliation(s)
- Dara N. Orbach
- Department of Life SciencesTexas A&M University‐ Corpus ChristiCorpus ChristiTXUSA
- Department of Biological SciencesMount Holyoke CollegeSouth HadleyMAUSA
| | - Charlotte A. Brassey
- School of Science and the EnvironmentManchester Metropolitan UniversityManchesterUK
| | - James D. Gardiner
- Department of Musculoskeletal and Ageing ScienceInstitute of Lifecourse and Medical SciencesUniversity of LiverpoolLiverpoolUK
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25
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Still EK, Schreiber DK, Wang J, Hosemann P. Alpha Shape Analysis (ASA) Framework for Post- Clustering Property Determination in Atom Probe Tomographic Data. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2021; 27:297-317. [PMID: 33407960 DOI: 10.1017/s1431927620024939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
While application of clustering algorithms to atom probe tomography data have enabled quantification of solute clusters in terms of number density, size, and subcomposition there exist other properties (e.g., volume, surface area, and composition) that are better determined by defining an interface between the cluster and the surrounding matrix. The limitation in composition results from an ion selection step where the expected matrix ion types are omitted from the cluster search algorithm to enhance the contrast between the matrix and cluster and to reduce the complexity of the search. Previously, composition determination within solute clusters has utilized a secondary envelopment and erosion step on top of conventional methods such as maximum separation. In this work, we present a novel stochastic method that combines the particle identification fidelity of a conventional clustering algorithm with the analytical flexibility of mesh-based approaches through the generation of alpha shapes for each identified cluster. The corresponding mesh accounts for concave components of the clusters and determines the volume and surface area of the clusters; additionally, the mesh boundary is utilized to update the total composition according to the internal ions.
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Affiliation(s)
- Evan K Still
- Department of Nuclear Engineering, University of California, Berkeley, CA94720, USA
| | - Daniel K Schreiber
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA99354, USA
| | - Jing Wang
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA99354, USA
| | - Peter Hosemann
- Department of Nuclear Engineering, University of California, Berkeley, CA94720, USA
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26
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Marek RD, Falkingham PL, Benson RBJ, Gardiner JD, Maddox TW, Bates KT. Evolutionary versatility of the avian neck. Proc Biol Sci 2021; 288:20203150. [PMID: 33653136 PMCID: PMC7934994 DOI: 10.1098/rspb.2020.3150] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Bird necks display unparalleled levels of morphological diversity compared to other vertebrates, yet it is unclear what factors have structured this variation. Using three-dimensional geometric morphometrics and multivariate statistics, we show that the avian cervical column is a hierarchical morpho-functional appendage, with varying magnitudes of ecologically driven osteological variation at different scales of organization. Contrary to expectations given the widely varying ecological functions of necks in different species, we find that regional modularity of the avian neck is highly conserved, with an overall structural blueprint that is significantly altered only by the most mechanically demanding ecological functions. Nevertheless, the morphologies of vertebrae within subregions of the neck show more prominent signals of adaptation to ecological pressures. We also find that both neck length allometry and the nature of neck elongation in birds are different from other vertebrates. In contrast with mammals, neck length scales isometrically with head mass and, contrary to previous work, we show that neck elongation in birds is achieved predominantly by increasing vertebral lengths rather than counts. Birds therefore possess a cervical spine that may be unique in its versatility among extant vertebrates, one that, since the origin of flight, has adapted to function as a surrogate forelimb in varied ecological niches.
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Affiliation(s)
- Ryan D Marek
- Department of Musculoskeletal & Ageing Science, University of Liverpool, William Henry Duncan Building, 6 West Derby Street, Liverpool, L7 8TX, UK
| | - Peter L Falkingham
- Biological and Environmental Sciences, James Parsons Building, Byrom Street, Liverpool L3 3AF, UK
| | - Roger B J Benson
- Department of Earth Sciences, University of Oxford, South Parks Road, Oxford OX1 3AN, UK
| | - James D Gardiner
- Department of Musculoskeletal & Ageing Science, University of Liverpool, William Henry Duncan Building, 6 West Derby Street, Liverpool, L7 8TX, UK
| | - Thomas W Maddox
- Department of Musculoskeletal & Ageing Science, University of Liverpool, William Henry Duncan Building, 6 West Derby Street, Liverpool, L7 8TX, UK
| | - Karl T Bates
- Department of Musculoskeletal & Ageing Science, University of Liverpool, William Henry Duncan Building, 6 West Derby Street, Liverpool, L7 8TX, UK
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Brassey CA, Behnsen J, Gardiner JD. Postcopulatory sexual selection and the evolution of shape complexity in the carnivoran baculum. Proc Biol Sci 2020; 287:20201883. [PMID: 33049172 PMCID: PMC7657853 DOI: 10.1098/rspb.2020.1883] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
The baculum is an enigmatic bone within the mammalian glans penis, and the driving forces behind its often bizarre shape have captivated evolutionary biologists for over a century. Hypotheses for the function of the baculum include aiding in intromission, stimulating females and assisting with prolonged mating. Previous attempts to test these hypotheses have focused on the gross size of the baculum and have failed to reach a consensus. We conducted three-dimensional imaging and apply a new method to quantify three-dimensional shape complexity in the carnivoran baculum. We show that socially monogamous species are evolving towards complex-shaped bacula, whereas group-living species are evolving towards simple bacula. Overall three-dimensional baculum shape complexity is not related to relative testes mass, but tip complexity is higher in induced ovulators and species engaging in prolonged copulation. Our study provides evidence of postcopulatory sexual selection pressures driving three-dimensional shape complexity in the carnivore baculum.
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Affiliation(s)
- Charlotte A Brassey
- Department of Natural Sciences, Manchester Metropolitan University, M1 5GD, UK
| | - Julia Behnsen
- Manchester X-ray Imaging Facility, University of Manchester, M13 9PL, UK
| | - James D Gardiner
- Institute of Ageing and Chronic Disease, University of Liverpool, L7 8TX, UK
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Klinkenbuß D, Metz O, Reichert J, Hauffe T, Neubauer TA, Wesselingh FP, Wilke T. Performance of 3D Morphological Methods in the Machine Learning Assisted Classification of Closely Related Fossil Bivalve Species of the Genus Dreissena. MALACOLOGIA 2020. [DOI: 10.4002/040.063.0109] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
- Denise Klinkenbuß
- Department of Animal Ecology & Systematics, Justus Liebig University Giessen, Heinrich-Buff-Ring 26, 35392 Giessen, Germany
| | - Olivia Metz
- Department of Animal Ecology & Systematics, Justus Liebig University Giessen, Heinrich-Buff-Ring 26, 35392 Giessen, Germany
| | - Jessica Reichert
- Department of Animal Ecology & Systematics, Justus Liebig University Giessen, Heinrich-Buff-Ring 26, 35392 Giessen, Germany
| | - Torsten Hauffe
- Department of Animal Ecology & Systematics, Justus Liebig University Giessen, Heinrich-Buff-Ring 26, 35392 Giessen, Germany
| | - Thomas A. Neubauer
- Department of Animal Ecology & Systematics, Justus Liebig University Giessen, Heinrich-Buff-Ring 26, 35392 Giessen, Germany
| | - Frank P. Wesselingh
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands
| | - Thomas Wilke
- Department of Animal Ecology & Systematics, Justus Liebig University Giessen, Heinrich-Buff-Ring 26, 35392 Giessen, Germany
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Stanchak KE, French C, Perkel DJ, Brunton BW. The Balance Hypothesis for the Avian Lumbosacral Organ and an Exploration of Its Morphological Variation. Integr Org Biol 2020; 2:obaa024. [PMID: 33791565 PMCID: PMC7751001 DOI: 10.1093/iob/obaa024] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
Abstract
Birds (Aves) exhibit exceptional and diverse locomotor behaviors, including the exquisite ability to balance on two feet. How birds so precisely control their movements may be partly explained by a set of intriguing modifications in their lower spine. These modifications are collectively known as the lumbosacral organ (LSO) and are found in the fused lumbosacral vertebrae called the synsacrum. They include a set of transverse canal-like recesses in the synsacrum that align with lateral lobes of the spinal cord, as well as a dorsal groove in the spinal cord that houses an egg-shaped glycogen body. Based on compelling but primarily observational data, the most recent functional hypotheses for the LSO consider it to be a secondary balance organ, in which the transverse canals are analogous to the semicircular canals of the inner ear. If correct, this hypothesis would reshape our understanding of avian locomotion, yet the LSO has been largely overlooked in the recent literature. Here, we review the current evidence for this hypothesis and then explore a possible relationship between the LSO and balance-intensive locomotor ecologies. Our comparative morphological dataset consists of micro-computed tomography (μ-CT) scans of synsacra from ecologically diverse species. We find that birds that perch tend to have more prominent transverse canals, suggesting that the LSO is useful for balance-intensive behaviors. We then identify the crucial outstanding questions about LSO structure and function. The LSO may be a key innovation that allows independent but coordinated motion of the head and the body, and a full understanding of its function and evolution will require multiple interdisciplinary research efforts.
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Affiliation(s)
- K E Stanchak
- Department of Biology, University of Washington, Seattle, WA 98195, USA
| | - C French
- Department of Biology, University of Washington, Seattle, WA 98195, USA
| | - D J Perkel
- Department of Biology, University of Washington, Seattle, WA 98195, USA
- Department of Otolaryngology, University of Washington, Seattle, WA 98195, USA
| | - B W Brunton
- Department of Biology, University of Washington, Seattle, WA 98195, USA
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3D Building Façade Reconstruction Using Deep Learning. ISPRS INTERNATIONAL JOURNAL OF GEO-INFORMATION 2020. [DOI: 10.3390/ijgi9050322] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
In recent years, advances in computer hardware, graphics rendering algorithms and computer vision have enabled the utilization of 3D building reconstructions in the fields of archeological structure restoration and urban planning. This paper deals with the reconstruction of realistic 3D models of buildings façades, in the urban environment for cultural heritage. The proposed approach is an extension of our previous work in this research topic, which introduced a methodology for accurate 3D realistic façade reconstruction by defining and exploiting a relation between stereoscopic image and tacheometry data. In this work, we re-purpose well known deep neural network architectures in the fields of image segmentation and single image depth prediction, for the tasks of façade structural element detection, depth point-cloud generation and protrusion estimation, with the goal of alleviating drawbacks in our previous design, resulting in a more light-weight, robust, flexible and cost-effective design.
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Thomas NDA, Gardiner JD, Crompton RH, Lawson R. Physical and perceptual measures of walking surface complexity strongly predict gait and gaze behaviour. Hum Mov Sci 2020; 71:102615. [PMID: 32452433 DOI: 10.1016/j.humov.2020.102615] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2019] [Revised: 03/13/2020] [Accepted: 03/19/2020] [Indexed: 11/24/2022]
Abstract
BACKGROUND Walking surfaces vary in complexity and are known to affect stability and fall risk whilst walking. However, existing studies define surfaces through descriptions only. OBJECTIVE This study used a multimethod approach to measure surface complexity in order to try to characterise surfaces with respect to locomotor stability. METHODS We assessed how physical measurements of walking surface complexity compared to participant's perceptual ratings of the effect of complexity on stability. Physical measurements included local slope measures from the surfaces themselves and shape complexity measured using generated surface models. Perceptual measurements assessed participants' perceived stability and surface roughness using Likert scales. We then determined whether these measurements were indicative of changes to stability as assessed by behavioural changes including eye angle, head pitch angle, muscle coactivation, walking speed and walking smoothness. RESULTS Physical and perceptual measures were highly correlated, with more complex surfaces being perceived as more challenging to stability. Furthermore, complex surfaces, as defined from both these measurements, were associated with lowered head pitch, increased muscle coactivation and reduced walking smoothness. SIGNIFICANCE Our findings show that walking surfaces defined as complex, based on physical measurements, are perceived as more challenging to our stability. Furthermore, certain behavioural measures relate better to these perceptual and physical measures than others. Crucially, for the first time this study defined walking surfaces objectively rather than just based on subjective descriptions. This approach could enable future researchers to compare results across walking surface studies. Moreover, perceptual measurements, which can be collected easily and efficiently, could be used as a proxy for estimating behavioural responses to different surfaces. This could be particularly valuable when determining risk of instability when walking for individuals with compromised stability.
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Affiliation(s)
- Nicholas D A Thomas
- Institute of Population Health Sciences, University of Liverpool, Liverpool L69 7ZA, United Kingdom; Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool L7 8TX, United Kingdom.
| | - James D Gardiner
- Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool L7 8TX, United Kingdom
| | - Robin H Crompton
- Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool L7 8TX, United Kingdom
| | - Rebecca Lawson
- Institute of Population Health Sciences, University of Liverpool, Liverpool L69 7ZA, United Kingdom
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A 3D journey on virtual surfaces and inner structure of ossa genitalia in Primates by means of a non-invasive imaging tool. PLoS One 2020; 15:e0228131. [PMID: 31999734 PMCID: PMC6992188 DOI: 10.1371/journal.pone.0228131] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Accepted: 01/08/2020] [Indexed: 02/08/2023] Open
Abstract
Novel bio-imaging techniques such as micro-Computed Tomography provide an opportunity to investigate animal anatomy and morphology by overcoming limitations imposed by traditional anatomical drawings. The primate genital bones are complex anatomical structures whose occurrence in both male penis (baculum) and female clitoris (baubellum) may be difficult to assess in individual cadavers. We tested a 3-step methodological protocol, including different techniques ranging from inexpensive/simple to more expensive/sophisticated ones, by applying it to a sample of primate species, and resulting in different levels of data complexity: (1) presence/absence manual palpation method; (2) 2D X-ray plates; 3) 3D micro-CT scans. Manual palpation failed on 2 out of 23 specimens by detecting 1 false negative and 1 false positive; radiography failed once confirming the false positive, however firmly disproved by micro-CT; micro-CT analysis reported the presence of 9 bacula out of 11 male specimens and 1 baubellum out of 12 female specimens. A different baculum position was identified between strepsirrhine and haplorrhine species. We also aim to assess micro-CT as a non-invasive technique providing updated anatomical descriptions of primate ossa genitalia. Micro-CT 3D volumes showed the surface of some bones as rough, with a jagged appearance, whereas in others the surface appeared very smooth and coherent. In addition, four main types of bone internal structure were identified: 1) totally hollow; 2) hollow epiphyses and solid diaphysis with few or several channels inside; 3) totally solid with intricate Haversian channels; 4) totally solid with some channels (structure of single baubellum scanned). Ossa genitalia appeared as a living tissue having its own Haversian-like channels. The high resolution of micro-CT 3D-images of primate genital bones disclosed additional form variability to that available from genital bone 2D images of previous studies, and showed for the first time new internal and external morphological characters. Moreover, micro-CT non-invasive approach proved appropriate to recover much of scientific knowledge still hidden and often neglected in both museum specimens and primate cadavers only destined to necropsy.
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Shan S, Kovalsky SZ, Winchester JM, Boyer DM, Daubechies I. ariaDNE: A robustly implemented algorithm for Dirichlet energy of the normal. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13148] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Shan Shan
- Department of Mathematics Duke University Durham North Carolina
| | | | - Julie M. Winchester
- Department of Evolutionary Anthropology Duke University Durham North Carolina
| | - Doug M. Boyer
- Department of Evolutionary Anthropology Duke University Durham North Carolina
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