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Blanca-Reyes I, Lechuga V, Llebrés MT, Carreira JA, Ávila C, Cánovas FM, Castro-Rodríguez V. Under Stress: Searching for Genes Involved in the Response of Abies pinsapo Boiss to Climate Change. Int J Mol Sci 2024; 25:4820. [PMID: 38732040 PMCID: PMC11084517 DOI: 10.3390/ijms25094820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 04/25/2024] [Accepted: 04/26/2024] [Indexed: 05/13/2024] Open
Abstract
Currently, Mediterranean forests are experiencing the deleterious effects of global warming, which mainly include increased temperatures and decreased precipitation in the region. Relict Abies pinsapo fir forests, endemic in the southern Iberian Peninsula, are especially sensitive to these recent environmental disturbances, and identifying the genes involved in the response of this endangered tree species to climate-driven stresses is of paramount importance for mitigating their effects. Genomic resources for A. pinsapo allow for the analysis of candidate genes reacting to warming and aridity in their natural habitats. Several members of the complex gene families encoding late embryogenesis abundant proteins (LEAs) and heat shock proteins (HSPs) have been found to exhibit differential expression patterns between wet and dry seasons when samples from distinct geographical locations and dissimilar exposures to the effects of climate change were analyzed. The observed changes were more perceptible in the roots of trees, particularly in declining forests distributed at lower altitudes in the more vulnerable mountains. These findings align with previous studies and lay the groundwork for further research on the molecular level. Molecular and genomic approaches offer valuable insights for mitigating climate stress and safeguarding this endangered conifer.
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Affiliation(s)
- Irene Blanca-Reyes
- Grupo de Biología Molecular y Biotecnología, Departamento de Biología Molecular y Bioquímica en Instituto Andaluz de Biotecnología, Universidad de Málaga, Campus Universitario de Teatinos, 29071 Malaga, Spain; (I.B.-R.); (M.T.L.); (C.Á.)
| | - Víctor Lechuga
- Department of Ecology, Universidad de Jaen, Campus Las Lagunillas s/n., 23009 Jaén, Spain; (V.L.); (J.A.C.)
| | - María Teresa Llebrés
- Grupo de Biología Molecular y Biotecnología, Departamento de Biología Molecular y Bioquímica en Instituto Andaluz de Biotecnología, Universidad de Málaga, Campus Universitario de Teatinos, 29071 Malaga, Spain; (I.B.-R.); (M.T.L.); (C.Á.)
| | - José A. Carreira
- Department of Ecology, Universidad de Jaen, Campus Las Lagunillas s/n., 23009 Jaén, Spain; (V.L.); (J.A.C.)
| | - Concepción Ávila
- Grupo de Biología Molecular y Biotecnología, Departamento de Biología Molecular y Bioquímica en Instituto Andaluz de Biotecnología, Universidad de Málaga, Campus Universitario de Teatinos, 29071 Malaga, Spain; (I.B.-R.); (M.T.L.); (C.Á.)
| | - Francisco M. Cánovas
- Grupo de Biología Molecular y Biotecnología, Departamento de Biología Molecular y Bioquímica en Instituto Andaluz de Biotecnología, Universidad de Málaga, Campus Universitario de Teatinos, 29071 Malaga, Spain; (I.B.-R.); (M.T.L.); (C.Á.)
| | - Vanessa Castro-Rodríguez
- Grupo de Biología Molecular y Biotecnología, Departamento de Biología Molecular y Bioquímica en Instituto Andaluz de Biotecnología, Universidad de Málaga, Campus Universitario de Teatinos, 29071 Malaga, Spain; (I.B.-R.); (M.T.L.); (C.Á.)
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Pérez-Oliver MA, González-Mas MDC, Renau-Morata B, Arrillaga I, Sales E. Heat-Priming during Somatic Embryogenesis Increased Resilience to Drought Stress in the Generated Maritime Pine ( Pinus pinaster) Plants. Int J Mol Sci 2023; 24:ijms24119299. [PMID: 37298255 DOI: 10.3390/ijms24119299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Revised: 05/21/2023] [Accepted: 05/23/2023] [Indexed: 06/12/2023] Open
Abstract
Drought stress is becoming the most important factor of global warming in forests, hampering the production of reproductive material with improved resilience. Previously, we reported that heat-priming maritime pine (Pinus pinaster) megagametophytes during SE produced epigenetic changes that generated plants better adapted to subsequent heat stress. In this work, we tested, in an experiment performed under greenhouse conditions, whether heat-priming will produce cross-tolerance to mild drought stress (30 days) in 3-year-old priming-derived plants. We found that they maintain constitutive physiological differences as compared to controls, such as higher proline, abscisic acid, starch, and reduced glutathione and total protein contents, as well as higher ΦPSII yield. Primed plants also displayed a constitutive upregulation of the WRKY transcription factor and the Responsive to Dehydration 22 (RD22) genes, as well as of those coding for antioxidant enzymes (APX, SOD, and GST) and for proteins that avoid cell damage (HSP70 and DHNs). Furthermore, osmoprotectants as total soluble sugars and proteins were early accumulated in primed plants during the stress. Prolongated water withdrawal increased ABA accumulation and negatively affected photosynthesis in all plants but primed-derived plants recovered faster than controls. We concluded that high temperature pulses during somatic embryogenesis resulted in transcriptomic and physiological changes in maritime pine plants that can increase their resilience to drought stress, since heat-primed plants exhibit permanent activation of mechanisms for cell protection and overexpression of stress pathways that pre-adapt them to respond more efficiently to soil water deficit.
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Affiliation(s)
- María Amparo Pérez-Oliver
- Biotechnology and Biomedicine (BiotecMed) Institute and Plant Biology Department, Faculty of Pharmacy, Universitat de València, Vicent Andrés Estellés s/n, Burjassot, 46100 Valencia, Spain
| | - María Del Carmen González-Mas
- Biotechnology and Biomedicine (BiotecMed) Institute and Plant Biology Department, Faculty of Pharmacy, Universitat de València, Vicent Andrés Estellés s/n, Burjassot, 46100 Valencia, Spain
| | - Begoña Renau-Morata
- Biotechnology and Biomedicine (BiotecMed) Institute and Plant Biology Department, Faculty of Pharmacy, Universitat de València, Vicent Andrés Estellés s/n, Burjassot, 46100 Valencia, Spain
| | - Isabel Arrillaga
- Biotechnology and Biomedicine (BiotecMed) Institute and Plant Biology Department, Faculty of Pharmacy, Universitat de València, Vicent Andrés Estellés s/n, Burjassot, 46100 Valencia, Spain
| | - Ester Sales
- Agrarian and Environmental Sciences Department, Institute of Environmental Sciences (IUCA), University of Zaragoza, High Polytechnic School, Ctra. Cuarte s/n, 22197 Huesca, Spain
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CC-01 (chidamide plus celecoxib) modifies the tumor immune microenvironment and reduces tumor progression combined with immune checkpoint inhibitor. Sci Rep 2022; 12:1100. [PMID: 35058524 PMCID: PMC8776878 DOI: 10.1038/s41598-022-05055-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 01/05/2022] [Indexed: 12/14/2022] Open
Abstract
Immune checkpoint inhibitors (ICIs) have shown clinical benefit in solid tumors, with modest rates of clinical response. Hence, improved therapeutic approaches need to be investigated. Herein, we assessed a combination of chidamide plus celecoxib (called CC-01) combined with programmed cell death protein 1 (PD-1) blockade in a CT26 model as potent tumor microenvironment (TME) regulator. The antitumor activity was assessed by measuring tumor size, overall response rate, and survival rate. Immune profiling of tumor-infiltrating lymphocytes was performed by flow cytometry. Tumor tissues were assessed by chip assay to predict the possible pathway. Tumor size was significantly reduced in mice treated with CC-01 combined with or without anti-PD-1 antibody, however the triple combination therapy consistently demonstrated that it significantly increased both the ORR and survival rate in term of clinical applications. In the combination group, immune landscape profiling revealed decreased populations of immunosuppressive regulatory T cells, myeloid-derived suppressor cells, and tumor-associated macrophages. Analysis of the mouse tumor chip data using Gene Ontology enrichment analysis of biological processes revealed that the triple combination upregulated genes associated with responses to interferon-gamma. Our results demonstrated that CC-01 possessed potent TME regulatory properties, augmenting the antitumor effect when combined with ICIs. This antitumor effect was achieved by altering the immune landscape in TILs (tumor-infiltrating lymphocytes) and was associated with immune cell activation in the TME. Furthermore, CC-01 demonstrated potent anticancer immune response activity, mainly reducing the number and function of several immunosuppressive cells. The combination of CC-01 with an ICI will further enhance the anticancer effect and boost the immune response rate. Collectively, our results support the clinical evaluation of CC-01 in combination with ICIs in several advanced cancers.
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Rodrigues AM, Miguel C, Chaves I, António C. Mass spectrometry-based forest tree metabolomics. MASS SPECTROMETRY REVIEWS 2021; 40:126-157. [PMID: 31498921 DOI: 10.1002/mas.21603] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Accepted: 08/05/2019] [Indexed: 05/24/2023]
Abstract
Research in forest tree species has advanced slowly when compared with other agricultural crops and model organisms, mainly due to the long-life cycles, large genome sizes, and lack of genomic tools. Additionally, trees are complex matrices, and the presence of interferents (e.g., oleoresins and cellulose) challenges the analysis of tree tissues with mass spectrometry (MS)-based analytical platforms. In this review, advances in MS-based forest tree metabolomics are discussed. Given their economic and ecological significance, particular focus is given to Pinus, Quercus, and Eucalyptus forest tree species to better understand their metabolite responses to abiotic and biotic stresses in the current climate change scenario. Furthermore, MS-based metabolomics technologies produce large and complex datasets that require expertize to adequately manage, process, analyze, and store the data in dedicated repositories. To ensure that the full potential of forest tree metabolomics data are translated into new knowledge, these data should comply with the FAIR principles (i.e., Findable, Accessible, Interoperable, and Re-usable). It is essential that adequate standards are implemented to annotate metadata from forest tree metabolomics studies as is already required by many science and governmental agencies and some major scientific publishers. © 2019 John Wiley & Sons Ltd. Mass Spec Rev 40:126-157, 2021.
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Affiliation(s)
- Ana Margarida Rodrigues
- Plant Metabolomics Laboratory, GreenIT-Bioresources for Sustainability, Instituto de Tecnologia Química e Biológica António Xavie, Universidade Nova de Lisboa (ITQB NOVA) Avenida da República, Oeiras, 2780-157, Portugal
| | - Célia Miguel
- Forest Genomics & Molecular Genetics Lab, BioISI-Biosystems & Integrative Sciences Institute, Faculty of Sciences, University of Lisboa, 1749-016, Lisboa, Portugal
- Instituto de Biologia Experimental e Tecnológica (iBET), 2780-157, Oeiras, Portugal
| | - Inês Chaves
- Forest Genomics & Molecular Genetics Lab, BioISI-Biosystems & Integrative Sciences Institute, Faculty of Sciences, University of Lisboa, 1749-016, Lisboa, Portugal
- Instituto de Biologia Experimental e Tecnológica (iBET), 2780-157, Oeiras, Portugal
| | - Carla António
- Plant Metabolomics Laboratory, GreenIT-Bioresources for Sustainability, Instituto de Tecnologia Química e Biológica António Xavie, Universidade Nova de Lisboa (ITQB NOVA) Avenida da República, Oeiras, 2780-157, Portugal
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Perez R, Aron S. Adaptations to thermal stress in social insects: recent advances and future directions. Biol Rev Camb Philos Soc 2020; 95:1535-1553. [PMID: 33021060 DOI: 10.1111/brv.12628] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Revised: 06/04/2020] [Accepted: 06/05/2020] [Indexed: 01/20/2023]
Abstract
Thermal stress is a major driver of population declines and extinctions. Shifts in thermal regimes create new environmental conditions, leading to trait adaptation, population migration, and/or species extinction. Extensive research has examined thermal adaptations in terrestrial arthropods. However, little is known about social insects, despite their major role in ecosystems. It is only within the last few years that the adaptations of social insects to thermal stress have received attention. Herein, we discuss what is currently known about thermal tolerance and thermal adaptation in social insects - namely ants, termites, social bees, and social wasps. We describe the behavioural, morphological, physiological, and molecular adaptations that social insects have evolved to cope with thermal stress. We examine individual and collective responses to both temporary and persistent changes in thermal conditions and explore the extent to which individuals can exploit genetic variability to acclimatise. Finally, we consider the costs and benefits of sociality in the face of thermal stress, and we propose some future research directions that should advance our knowledge of individual and collective thermal adaptations in social insects.
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Affiliation(s)
- Rémy Perez
- Evolutionary Biology and Ecology, Université Libre de Bruxelles, Brussels, Belgium
| | - Serge Aron
- Evolutionary Biology and Ecology, Université Libre de Bruxelles, Brussels, Belgium
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Vyhnánek T, Nevrtalová E, Bjelková M, Balgová B. SSR loci survey of technical hemp cultivars: The optimization of a cost-effective analyses to study genetic variability. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 298:110551. [PMID: 32771162 DOI: 10.1016/j.plantsci.2020.110551] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Accepted: 06/05/2020] [Indexed: 06/11/2023]
Abstract
Our study aimed to optimize a selection of a suitable combination of SSRs (Simple Sequence Repeats) for determination of technical Cannabis cultivars and genetic variability level. We used sequences of 23 published SSR families (107 alleles) and amplified them in 28 cultivars. One of the alleles possesses no selective information (SSR family CAN1660) due to its presence in every single tested cultivar. We excluded it, together with another 11 least informative alleles. After data filtration, we used 96 alleles to do recursive sub-sampling of random alleles' sets. We found a minimal set of 8 alleles (in three different combinations) to distinguish 28 analyzed cultivars from each other. Our results contribute to saving resources and to reduce the performance time of the molecular analysis.
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Affiliation(s)
- Tomáš Vyhnánek
- Department of Plant Biology, Faculty of AgriSciences, Mendel University in Brno, Zemědělská 1, 613 00 Brno, Czech Republic
| | - Eva Nevrtalová
- Department of Plant Biology, Faculty of AgriSciences, Mendel University in Brno, Zemědělská 1, 613 00 Brno, Czech Republic.
| | - Marie Bjelková
- Agritec Plant Research, Ltd. Šumperk, Zemědělská 6, 787 01 Šumperk, Czech Republic
| | - Barbora Balgová
- Department of Plant Biology, Faculty of AgriSciences, Mendel University in Brno, Zemědělská 1, 613 00 Brno, Czech Republic
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El-Azaz J, de la Torre F, Pascual MB, Debille S, Canlet F, Harvengt L, Trontin JF, Ávila C, Cánovas FM. Transcriptional analysis of arogenate dehydratase genes identifies a link between phenylalanine biosynthesis and lignin biosynthesis. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:3080-3093. [PMID: 32090267 PMCID: PMC7260716 DOI: 10.1093/jxb/eraa099] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 02/17/2020] [Indexed: 05/29/2023]
Abstract
Biogenesis of the secondary cell wall in trees involves the massive biosynthesis of the phenylalanine-derived polymer lignin. Arogenate dehydratase (ADT) catalyzes the last, and rate-limiting, step of the main pathway for phenylalanine biosynthesis. In this study, we found that transcript levels for several members of the large ADT gene family, including ADT-A and ADT-D, were enhanced in compression wood of maritime pine, a xylem tissue enriched in lignin. Transcriptomic analysis of maritime pine silenced for PpMYB8 revealed that this gene plays a critical role in coordinating the deposition of lignin with the biosynthesis of phenylalanine. Specifically, it was found that ADT-A and ADT-D were strongly down-regulated in PpMYB8-silenced plants and that they were transcriptionally regulated through direct interaction of this transcription factor with regulatory elements present in their promoters. Another transcription factor, PpHY5, exhibited an expression profile opposite to that of PpMYB8 and also interacted with specific regulatory elements of ADT-A and ADT-D genes, suggesting that it is involved in transcriptional regulation of phenylalanine biosynthesis. Taken together, our results reveal that PpMYB8 and PpHY5 are involved in the control of phenylalanine formation and its metabolic channeling for lignin biosynthesis and deposition during wood formation in maritime pine.
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Affiliation(s)
- Jorge El-Azaz
- Grupo de Biología Molecular y Biotecnología de Plantas (BIO-114), Universidad de Málaga, Málaga, Spain
| | - Fernando de la Torre
- Grupo de Biología Molecular y Biotecnología de Plantas (BIO-114), Universidad de Málaga, Málaga, Spain
| | - María Belén Pascual
- Grupo de Biología Molecular y Biotecnología de Plantas (BIO-114), Universidad de Málaga, Málaga, Spain
| | - Sandrine Debille
- Institut Technologique FCBA, Pôle Biotechnologies et Sylviculture Avancée (BSA), Pierroton, Cestas, France
| | - Francis Canlet
- Institut Technologique FCBA, Pôle Biotechnologies et Sylviculture Avancée (BSA), Pierroton, Cestas, France
| | - Luc Harvengt
- Institut Technologique FCBA, Pôle Biotechnologies et Sylviculture Avancée (BSA), Pierroton, Cestas, France
| | - Jean-François Trontin
- Institut Technologique FCBA, Pôle Biotechnologies et Sylviculture Avancée (BSA), Pierroton, Cestas, France
| | - Concepción Ávila
- Grupo de Biología Molecular y Biotecnología de Plantas (BIO-114), Universidad de Málaga, Málaga, Spain
| | - Francisco M Cánovas
- Grupo de Biología Molecular y Biotecnología de Plantas (BIO-114), Universidad de Málaga, Málaga, Spain
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Pinus massoniana Introgression Hybrids Display Differential Expression of Reproductive Genes. FORESTS 2019. [DOI: 10.3390/f10030230] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Pinus massoniana and P. hwangshanensis are two conifer species located in southern China, which are of both economic and ornamental value. Around the middle and lower reaches of the Yangtze River, P. massoniana occurs mainly at altitudes below 700 m, while P. hwangshanensis can be found above 900 m. At altitudes where the distribution of both pines overlaps, a natural introgression hybrid exists, which we will further refer to as the Z pine. This pine has a morphological character that shares attributes of both P. massoniana and P. hwangshanensis. However, compared to the other two pines, its reproductive structure, the pinecone, has an ultra-low ripening rate with seeds that germinate poorly. In this study, we aimed to find the reason for the impaired cone maturation by comparing transcriptome libraries of P. massoniana and Z pine cones at seven successive growth stages. After sequencing and assembly, we obtained unigenes and then annotated them against NCBI’s non-redundant nucleotide and protein sequences, Swiss-Prot, Clusters of Orthologous Groups, Gene Ontology and KEGG Orthology databases. Gene expression levels were estimated and differentially expressed genes (DEGs) of the two pines were mined and analyzed. We found that several of them indeed relate to reproductive process. At every growth stage, these genes are expressed at a higher level in P. massoniana than in the Z pine. These data provide insight into understanding which molecular mechanisms are altered between P. massoniana and the Z pine that might cause changes in the reproductive process.
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10
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Pascual MB, Llebrés M, Craven‐Bartle B, Cañas RA, Cánovas FM, Ávila C. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. PLANT BIOTECHNOLOGY JOURNAL 2018; 16:1094-1104. [PMID: 29055073 PMCID: PMC5902770 DOI: 10.1111/pbi.12854] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2017] [Revised: 09/13/2017] [Accepted: 10/16/2017] [Indexed: 05/14/2023]
Abstract
The transcriptional regulation of phenylalanine metabolism is particularly important in conifers, long-lived species that use large amounts of carbon in wood. Here, we show that the Pinus pinaster transcription factor, PpNAC1, is a main regulator of phenylalanine biosynthesis and utilization. A phylogenetic analysis classified PpNAC1 in the NST proteins group and was selected for functional characterization. PpNAC1 is predominantly expressed in the secondary xylem and compression wood of adult trees. Silencing of PpNAC1 in P. pinaster results in the alteration of stem vascular radial patterning and the down-regulation of several genes associated with cell wall biogenesis and secondary metabolism. Furthermore, transactivation and EMSA analyses showed that PpNAC1 is able to activate its own expression and PpMyb4 promoter, while PpMyb4 is able to activate PpMyb8, a transcriptional regulator of phenylalanine and lignin biosynthesis in maritime pine. Together, these results suggest that PpNAC1 is a functional ortholog of the ArabidopsisSND1 and NST1 genes and support the idea that key regulators governing secondary cell wall formation could be conserved between gymnosperms and angiosperms. Understanding the molecular switches controlling wood formation is of paramount importance for fundamental tree biology and paves the way for applications in conifer biotechnology.
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Affiliation(s)
- María Belén Pascual
- Departamento de Biología Molecular y BioquímicaFacultad de CienciasUniversidad de MálagaCampus Universitario de TeatinosMálagaSpain
| | - María‐Teresa Llebrés
- Departamento de Biología Molecular y BioquímicaFacultad de CienciasUniversidad de MálagaCampus Universitario de TeatinosMálagaSpain
| | - Blanca Craven‐Bartle
- Departamento de Biología Molecular y BioquímicaFacultad de CienciasUniversidad de MálagaCampus Universitario de TeatinosMálagaSpain
| | - Rafael A. Cañas
- Departamento de Biología Molecular y BioquímicaFacultad de CienciasUniversidad de MálagaCampus Universitario de TeatinosMálagaSpain
| | - Francisco M. Cánovas
- Departamento de Biología Molecular y BioquímicaFacultad de CienciasUniversidad de MálagaCampus Universitario de TeatinosMálagaSpain
| | - Concepción Ávila
- Departamento de Biología Molecular y BioquímicaFacultad de CienciasUniversidad de MálagaCampus Universitario de TeatinosMálagaSpain
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Llebrés MT, Pascual MB, Debille S, Trontin JF, Harvengt L, Avila C, Cánovas FM. The role of arginine metabolic pathway during embryogenesis and germination in maritime pine (Pinus pinaster Ait.). TREE PHYSIOLOGY 2018; 38:471-484. [PMID: 29112758 DOI: 10.1093/treephys/tpx133] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Accepted: 09/25/2017] [Indexed: 05/20/2023]
Abstract
Vegetative propagation through somatic embryogenesis is critical in conifer biotechnology towards multivarietal forestry that uses elite varieties to cope with environmental and socio-economic issues. An important and still sub-optimal process during in vitro maturation of somatic embryos (SE) is the biosynthesis and deposition of storage proteins, which are rich in amino acids with high nitrogen (N) content, such as arginine. Mobilization of these N-rich proteins is essential for the germination and production of vigorous somatic seedlings. Somatic embryos accumulate lower levels of N reserves than zygotic embryos (ZE) at a similar stage of development. To understand the molecular basis for this difference, the arginine metabolic pathway has been characterized in maritime pine (Pinus pinaster Ait.). The genes involved in arginine metabolism have been identified and GFP-fusion constructs were used to locate the enzymes in different cellular compartments and clarify their metabolic roles during embryogenesis and germination. Analysis of gene expression during somatic embryo maturation revealed high levels of transcripts for genes involved in the biosynthesis and metabolic utilization of arginine. By contrast, enhanced expression levels were only observed during the last stages of maturation and germination of ZE, consistent with the adequate accumulation and mobilization of protein reserves. These results suggest that arginine metabolism is unbalanced in SE (simultaneous biosynthesis and degradation of arginine) and could explain the lower accumulation of storage proteins observed during the late stages of somatic embryogenesis.
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Affiliation(s)
- María-Teresa Llebrés
- Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Universidad de Málaga, Campus Universitario de Teatinos, 29071 Málaga, Spain
| | - María-Belén Pascual
- Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Universidad de Málaga, Campus Universitario de Teatinos, 29071 Málaga, Spain
| | - Sandrine Debille
- Institut Technologique FCBA, Pôle Biotechnologies et Sylviculture Avancée (BSA), 71 Route d'Arcachon, Pierroton, 33610 Cestas, France
| | - Jean-François Trontin
- Institut Technologique FCBA, Pôle Biotechnologies et Sylviculture Avancée (BSA), 71 Route d'Arcachon, Pierroton, 33610 Cestas, France
| | - Luc Harvengt
- Institut Technologique FCBA, Pôle Biotechnologies et Sylviculture Avancée (BSA), 71 Route d'Arcachon, Pierroton, 33610 Cestas, France
| | - Concepción Avila
- Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Universidad de Málaga, Campus Universitario de Teatinos, 29071 Málaga, Spain
| | - Francisco M Cánovas
- Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Universidad de Málaga, Campus Universitario de Teatinos, 29071 Málaga, Spain
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12
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Cañas RA, Li Z, Pascual MB, Castro-Rodríguez V, Ávila C, Sterck L, Van de Peer Y, Cánovas FM. The gene expression landscape of pine seedling tissues. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 91:1064-1087. [PMID: 28635135 DOI: 10.1111/tpj.13617] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2016] [Revised: 05/13/2017] [Accepted: 05/31/2017] [Indexed: 05/20/2023]
Abstract
Conifers dominate vast regions of the Northern hemisphere. They are the main source of raw materials for timber industry as well as a wide range of biomaterials. Despite their inherent difficulties as experimental models for classical plant biology research, the technological advances in genomics research are enabling fundamental studies on these plants. The use of laser capture microdissection followed by transcriptomic analysis is a powerful tool for unravelling the molecular and functional organization of conifer tissues and specialized cells. In the present work, 14 different tissues from 1-month-old maritime pine (Pinus pinaster) seedlings have been isolated and their transcriptomes analysed. The results increased the sequence information and number of full-length transcripts from a previous reference transcriptome and added 39 841 new transcripts. In total, 2376 transcripts were ubiquitously expressed in all of the examined tissues. These transcripts could be considered the core 'housekeeping genes' in pine. The genes have been clustered in function to their expression profiles. This analysis reduced the number of profiles to 38, most of these defined by their expression in a unique tissue that is much higher than in the other tissues. The expression and localization data are accessible at ConGenIE.org (http://v22.popgenie.org/microdisection/). This study presents an overview of the gene expression distribution in different pine tissues, specifically highlighting the relationships between tissue gene expression and function. This transcriptome atlas is a valuable resource for functional genomics research in conifers.
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Affiliation(s)
- Rafael A Cañas
- Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Universidad de Málaga, Campus Universitario de Teatinos s/n, 29071, Málaga, Spain
| | - Zhen Li
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052, Ghent, Belgium
- Center for Plant Systems Biology, VIB, B-9052, Ghent, Belgium
- Bioinformatics Institute Ghent, Ghent University, Technologiepark 927, B-9052, Ghent, Belgium
| | - M Belén Pascual
- Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Universidad de Málaga, Campus Universitario de Teatinos s/n, 29071, Málaga, Spain
| | - Vanessa Castro-Rodríguez
- Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Universidad de Málaga, Campus Universitario de Teatinos s/n, 29071, Málaga, Spain
| | - Concepción Ávila
- Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Universidad de Málaga, Campus Universitario de Teatinos s/n, 29071, Málaga, Spain
| | - Lieven Sterck
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052, Ghent, Belgium
- Center for Plant Systems Biology, VIB, B-9052, Ghent, Belgium
- Bioinformatics Institute Ghent, Ghent University, Technologiepark 927, B-9052, Ghent, Belgium
| | - Yves Van de Peer
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052, Ghent, Belgium
- Center for Plant Systems Biology, VIB, B-9052, Ghent, Belgium
- Bioinformatics Institute Ghent, Ghent University, Technologiepark 927, B-9052, Ghent, Belgium
| | - Francisco M Cánovas
- Departamento de Biología Molecular y Bioquímica, Facultad de Ciencias, Universidad de Málaga, Campus Universitario de Teatinos s/n, 29071, Málaga, Spain
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