An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

A new sponge from the Marjum Formation of Utah documents the Cambrian origin of the hexactinellid body plan

Modern poriferans are classified into four classes-Calcarea, Demospongiae, Hexactinellida and Homoscleromorpha-the recognition of which in fossil specimens almost exclusively relies on spicule morphology and arrangement. Early fossil representatives of the phylum Porifera are morphologically diverse, and many of them problematically display characteristics that are incompatible with the classification scheme developed for modern taxa. Critically, hexactine spicules-a diagnostic feature of hexactinellids among modern taxa-are found in various Cambrian and Ordovician taxa that cannot be accommodated within the hexactinellid body plan. Here we describe a new poriferan from the Drumian Marjum Formation of Utah, Polygoniella turrelli gen. et sp. nov., which exhibits a unique combination of complex anatomical features for a Cambrian form, including a syconoid-like organization, a thick body wall, and a multi-layered hexactin-based skeleton. The hexactinellid-like body wall architecture of this new species supports a Cambrian origin of the hexactinellid body plan and provides valuable insights into character evolution in early glass sponges.

Silactins and Structural Diversity of Biosilica in Sponges

Sponges (phylum Porifera) were among the first metazoans on Earth, and represent a unique global source of highly structured and diverse biosilica that has been formed and tested over more than 800 million years of evolution. Poriferans are recognized as a unique archive of siliceous multiscaled skeletal constructs with superficial micro-ornamentation patterned by biopolymers. In the present study, spicules and skeletal frameworks of selected representatives of sponges in such classes as Demospongiae, Homoscleromorpha, and Hexactinellida were desilicified using 10% HF with the aim of isolating axial filaments, which resemble the shape and size of the original structures. These filaments were unambiguously identified in all specimens under study as F-actin, using the highly specific indicators iFluor™ 594-Phalloidin, iFluor™ 488-Phalloidin, and iFluor™ 350-Phalloidin. The identification of this kind of F-actins, termed for the first time as silactins, as specific pattern drivers in skeletal constructs of sponges opens the way to the fundamental understanding of their skeletogenesis. Examples illustrating the biomimetic potential of sophisticated poriferan biosilica patterned by silactins are presented and discussed.

Correcting sponge names: nomenclatural update of lower taxa level Porifera

The online World Porifera Database (WPD), the Porifera part of the World Register of Marine Species (WoRMS), lists virtually all published scientific names of sponges. The names of the WPD (as indeed all names in WoRMS) are guided by the Code of the International Comnission on Zoological Nomenclature (ICZN). The WPD names include all currently accepted as well as original combinations, and a majority of non-accepted non-original combinations. Currently, among the accepted names about 200 original lower taxa combinations were found to be accepted by default, usually varieties or formae, which were given that status in the WPD because there was no sufficient published information to support arguments for or against the accepted status. After 1961, varieties and formae are considered infrasubspecific taxa whose names are not regulated by the Code and the names are unavailable, but prior to that date these trinominal taxa are potential available names. It is the purpose of the present study to evaluate these original default accepted combinations and arrive at an argumented judgement on whether they are to be truly accepted or non-accepted. Furthermore, additional lower taxa name violations of the Code are also included. Overall, there are three categories of names of lower taxa treated here, (1) with combinations, which are judged to be accepted with elevated status as (sub)specific taxa, (2) with combinations judged to be junior synonyms, and (3) with combinations, which are violating articles of the Code. Among the last category there are a small number of varietal taxa described after the 1960 cut-off date, which are unavailable but are proposed to have the original name combination retained, but as new names with authorship and year changed to those of the present article. Also, names found to be unavailable for various reasons (four-name combinations, junior homonyms, phylocode names) are in this category. The following 31 new names are proposed (three of which are junior synonyms of senior accepted names, and an additional three are unavailable names made available by employing the same name combination with the present authorship and year): Aaptos hoshinoi nom.nov., Ancorina nanosclera nom.nov., Axinella kurushima nom.nov., Callyspongia (Cladochalina) desqueyrouxfaundezae nom.nov., Cliona carpenteri subsp. hentscheli nom.nov., Callyspongia (Toxochalina) gustavoi nom.nov., Craniella microspira nom.nov., Dictyaulus romani nom.nov., Grantia breitfussi nom.nov., Haliclona alba subsp. albapontica nom.nov., Haliclona aquaeductus subsp. sebastopolensis nom.nov., Haliclona inflata subsp. vladimiri nom.nov., Haliclona informis subsp. voldomaroi nom.nov., Haliclona palmata subsp. pontuseuxiniensis nom.nov., Haliclona (Gellius) arthuri nom.nov., Haliclona (Gellius) godthaabae nom.nov., Haliclona merguiensis nom.nov., Haliclona senjitanitai nom.nov., Iophon hentscheli nom.nov., Leucandra wilsoni nom.nov., Paraleucilla bassensis nom.nov. (= P. saccharata), Pione carpenteri subsp. hentscheli nom.nov., Psammocinia samaaii nom.nov., Protoschmidtia czerniavskyi nom.nov. (= Metschnikowia tuberculata), Reiswiginella nom.nov., Scalarispongia lamarcki nom.nov., Spheciospongia hentscheli nom.nov., Spongia (Spongia) vonlendenfeldi nom.nov. (= S. (S.) lignosa), Suberites austral nom.nov., Suberites dendyi nom.nov., Suberites simae nom.nov., and Timea levii nom.nov.

Two centuries of sponges (phylum Porifera) taxonomic studies in Indonesia (1820-2021): checklist and bibliography

Sponges in Indonesia have been studied since the 19th century during several historical expeditions and international collaborations. Hundreds of new species were reported from various locations, e.g., Ambon, Ternate, Sulawesi, Aru, and Kei Islands. This study aimed to create a sponge (Porifera: Calcarea, Demospongiae, Hexactinellida, and Homoscleromorpha) species checklist from Indonesia based on World Porifera Database. With a total of 731 species, our checklist comprises approximately 45 species of Calcarea, 566 species of Demospongiae, 115 species of Hexactinellida, and five species of Homoscleromorpha. The number of species are recorded from 12 marine ecoregions across the Indonesian Archipelago and freshwater habitats (Spongillida) between 1820-2021. The species composition indicates higher regional endemism or poorly studied since no other report after the original description. However, several marine ecoregions of Indonesia remain highly overlooked (e.g., Northeast Sulawesi, Papua, Southern Java, Western Sumatra), including freshwater habitats. Therefore, a taxonomic biodiversity baseline study, particularly on Porifera, is necessary to better understand the aquatic and marine biodiversity in the Indonesia Archipelago.

Expanded sampling of New Zealand glass sponges (Porifera: Hexactinellida) provides new insights into biodiversity, chemodiversity, and phylogeny of the class

Glass sponges (Hexactinellida) constitute important parts of ecosystems on the deep-sea floor worldwide. However, they are still an understudied group in terms of their diversity and systematics. Here, we report on new specimens collected during RV Sonne expedition SO254 to the New Zealand region, which has recently emerged as a biodiversity hotspot for hexactinellids. Examination of the material revealed several species new to science or so far unknown from this area. While formal taxonomic descriptions of a fraction of these were published earlier, we here briefly report on the morphology of the remaining new species and use the collection to greatly expand the molecular phylogeny of the group as established with ribosomal DNA and cytochrome oxidase subunit I markers. In addition, we provide a chemical fingerprinting analysis on a subset of the specimens to investigate if the metabolome of glass sponges contains phylogenetic signal that could be used to supplement morphological and DNA-based approaches.

The terminology of sponge spicules

Sponges (Porifera) are a diverse and globally distributed clade of benthic organisms, with an evolutionary history reaching at least the Ediacaran-Cambrian (541 Ma) boundary interval. Throughout their research history, sponges have been subjects of intense studies in many fields, including paleontology, evolutionary biology, and even bioengineering and pharmacology. The skeletons of sponges are mostly characterized by the presence of mineral elements termed spicules, which structurally support the sponge bodies, though they also minimize the metabolic cost of water exchange and deter predators. The description of the spicules' shape and the skeleton organization represents the fundamental basis of sponge taxonomy and systematics. Here, we provide an illustrated catalogue of sponge spicules, which is based on previous works on sponge spicules, for example, and gathers and updates all terms that are currently used in sponge descriptions. Each spicule type is further illustrated through high quality scanning electron microscope micrographs. It is expected to be a valuable source that will facilitate spicule identification and, in certain cases, also enable sponge classification.

The Comparative approach to bio-inspired design: integrating biodiversity and biologists into the design process

Biodiversity provides a massive library of ideas for bio-inspired design, but the sheer number of species to consider can be daunting. Current approaches for sifting through biodiversity to identify relevant biological models include searching for champion adapters that are particularly adept at solving a particular design challenge. While the champion adapter approach has benefits, it tends to focus on a narrow set of popular models while neglecting the majority of species. An alternative approach to bio-inspired design is the comparative method, which leverages biodiversity by drawing inspiration across a broad range of species. This approach uses methods in phylogenetics to map traits across evolutionary trees and compare trait variation to infer structure-function relationships. Although comparative methods have not been widely used in bio-inspired design, they have led to breakthroughs in studies on gecko-inspired adhesives and multifunctionality of butterfly wing scales. Here we outline how comparative methods can be used to complement existing approaches to bioinspired design, and we provide an example focused on bio-inspired lattices, including honeycomb and glass sponges. We demonstrate how comparative methods can lead to breakthroughs in bio-inspired applications as well as answer major questions in biology, which can strengthen collaborations with biologists and produce deeper insights into biological function.

Good Practices in Sponge Natural Product Studies: Revising Vouchers with Isomalabaricane Triterpenes

Species misidentification in the field of natural products is an acknowledged problem. These errors are especially widespread in sponge studies, albeit rarely assessed and documented. As a case study, we aim to revisit reports of isomalabaricane triterpenes, isolated from four demosponge genera: Jaspis, Geodia, Stelletta and Rhabdastrella. From a total of 44 articles (1981–2022), 27 unique vouchers were listed, 21 of which were accessed and re-examined here: 11 (52.4%) of these were misidentified. Overall, 65.9% of the studies published an incorrect species name: previously identified Jaspis and Stelletta species were all in fact Rhabdastrella globostellata. We conclude that isomalabaricane triterpenes were isolated from only two Rhabdastrella species and possibly one Geodia species. In addition to shedding a new light on the distribution of isomalabaricane triterpenes, this study is an opportunity to highlight the crucial importance of vouchers in natural product studies. Doing so, we discuss the impact of species misidentification and poor accessibility of vouchers in the field of sponge natural products. We advocate for stricter voucher guidelines in natural product journals and propose a common protocol of good practice, in the hope of reducing misidentifications in sponge studies, ensure reproducibility of studies, and facilitate follow-up work on the original material.

Rossellid glass sponges (Porifera, Hexactinellida) from New Zealand waters, with description of one new genus and six new species

New Zealand's surrounding deep waters have become known as a diversity hotspot for glass sponges (Porifera: Hexactinellida) in recent years, and description and collection efforts are continuing. Here we report on eight rossellids (Hexasterophora: Lyssacinosida: Rossellidae) collected during the 2017 RV Sonne cruise SO254 by ROV Kiel 6000 as part of Project PoribacNewZ of the University of Oldenburg, Germany. The material includes six species new to science, two of which are assigned to a so far undescribed genus; we further re-describe two previously known species. The known extant rossellid diversity from the New Zealand region is thus almost doubled, from nine species in five genera to 17 species in eight genera. The specimens described here are only a small fraction of hexactinellids collected on cruise SO254. Unfortunately, the first author passed away while working on this collection, only being able to complete the nine descriptions reported here. The paper concludes with an obituary to him, the world-leading expert on glass sponge taxonomy who will be greatly missed.

Mitochondrial evolution in the Demospongiae (Porifera): Phylogeny, divergence time, and genome biology

The sponge class Demospongiae is the most speciose and morphologically diverse in the phylum Porifera, and the species within it are vital components of a range of ecosystems worldwide. Despite their ubiquity, a number of recalcitrant problems still remain to be solved regarding their phylogenetic inter-relationships, the timing of their appearance, and their mitochondrial biology, the latter of which is only beginning to be investigated. Here we generated 14 new demosponge mitochondrial genomes which, alongside previously published mitochondrial resources, were used to address these issues. In addition to phylogenomic analysis, we have used syntenic data and analysis of coding regions to forge a framework for understanding the inter-relationships between Demospongiae sub-classes and orders. We have also leveraged our new resources to study the mitochondrial biology of these clades in terms of codon usage, optimisation and gene expression, to understand how these vital cellular components may have contributed to the success of the Porifera. Our results strongly support a sister relationship between Keratosa and (Verongimorpha + Heteroscleromorpha), contradicting previous studies using nuclear markers. Our study includes one species of Clionaida, and show for the first time support for a grouping of Suberitida+(Clionaida+(Tethyida + Poecilosclerida). The findings of our phylogenetic analyses are supported by in-depth examination of structural and coding-level evidence from our mitochondrial data. A time-calibrated phylogeny estimated the origin of Demospongiae in the Cambrian (~529 Mya), and suggests that most demosponge order crown-groups emerged in the Mesozoic. This work therefore provides a robust basis for considering demosponge phylogenetic relationships, as well as essential mitochondrial data for understanding the biological basis for their success and diversity.

A collection of hexactinellids (Porifera) from the deep South Atlantic and North Pacific: new genus, new species and new records

This article describes or redescribes four hexactinellid sponges, namely Poliopogon amadou, Euplectella sanctipauli sp. nov., Bolosoma perezi sp. nov. and Advhena magnifica gen. et sp. nov. P. amadou, E. sanctipauli sp. nov. and B. perezi sp. nov. represent new findings for the South Atlantic deep-sea fauna, including the first record of Bolosoma for this ocean. Advhena magnifica gen. et sp. nov., on the other hand, was collected by NOAA oceanographic expeditions in the North Pacific (Pigafetta Guyot).

Optimization design of lightweight structure inspired by glass sponges (Porifera, Hexacinellida) and its mechanical properties

The glass sponge is a porous lightweight structure in the deep sea. It has high toughness, high strength, and high stability. In this work, a super-depth-of-field microscope was employed to observe the microstructure of the glass sponge. Based on its morphological characteristics, two novel bio-inspired lightweight structures were proposed, and the finite-element analyses (FEA) of the structures were carried out under compression, torsion, and bending loads, respectively. The structure samples were fabricated using stereolithography 3D-printing technology, and the dimension sizes of the samples were equal to those of the corresponding FEA models. Mechanical tests were performed on an electronic universal testing machine, and the results were used to demonstrate the reliability of the FEA. Additionally, lightweight numbers (LWN) were proposed to evaluate the lightweight efficiency, and a honeycomb structure was selected as the reference structure. The results indicate that the lightweight numbers of the novel bio-inspired structures are higher than those of the honeycomb structure, respectively. Finally, the proposed structures were optimized by the response surface, BP (Back Propagation) and GA-BP (Genetic Algorithm optimized Back Propagation) method. The results show that the GA-BP model after training has a high accuracy. These results can provide significant guidance for the design of tube-shaped, thin-walled structures in the engineering.