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Bragatto J, Parra C, Filho FP, Silva S, Osorio J, Buttow S, Santos G, Jobim C, Nussio L, Daniel J. Effect of dietary isopropanol on the performance and milk quality of dairy cows. Anim Feed Sci Technol 2022. [DOI: 10.1016/j.anifeedsci.2022.115254] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
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Ferreira Dos Santos Vieira C, Duzi Sia A, Maugeri Filho F, Maciel Filho R, Pinto Mariano A. Isopropanol-butanol-ethanol production by cell-immobilized vacuum fermentation. BIORESOURCE TECHNOLOGY 2022; 344:126313. [PMID: 34798259 DOI: 10.1016/j.biortech.2021.126313] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 11/05/2021] [Accepted: 11/06/2021] [Indexed: 06/13/2023]
Abstract
The Isopropanol-Butanol-Ethanol productivity by solventogenic clostridia can increase when cells are immobilized on low-cost, renewable fibrous materials; however, butanol inhibition imposes the need for dilute sugar solutions (less than40 g/L). To alleviate this problem, the in-situ vacuum product recovery technique was applied to recover IBE in repeated-batch cultivation of Clostridium beijerinckii DSM 6423 immobilized on sugarcane bagasse. Five repeated batch cycles were conducted in a 7-L bioreactor containing P2 medium (∼60 g/L glucose) and bagasse packed in 3D-printed concentric annular baskets. In three cycles, glucose was consumed by 86% on average, the IBE productivity was 0.35 g/L∙h or 30% and 17% higher relative to free- and immobilized (without vacuum)-cell cultures. Notably, the product stream contained 45 g/L IBE. However, the fermentation was unsatisfactory in two cycles. Finally, by inserting a fibrous bed with hollow annuli in a vacuum fermentation, this work introduces the concept of an internal-loop boiling-driven fibrous-bed bioreactor.
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Affiliation(s)
- Carla Ferreira Dos Santos Vieira
- Laboratory of Optimization, Design, and Advanced Control - Fermentation Division (LOPCA-Ferm), School of Chemical Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Augusto Duzi Sia
- Laboratory of Optimization, Design, and Advanced Control - Fermentation Division (LOPCA-Ferm), School of Chemical Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Francisco Maugeri Filho
- Bioprocess and Metabolic Engineering Laboratory (LEMeB), School of Food Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Rubens Maciel Filho
- Laboratory of Optimization, Design, and Advanced Control - Fermentation Division (LOPCA-Ferm), School of Chemical Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Adriano Pinto Mariano
- Laboratory of Optimization, Design, and Advanced Control - Fermentation Division (LOPCA-Ferm), School of Chemical Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil.
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Lecaros RLG, Matira AR, Tayo LL, Hung WS, Hu CC, Tsai HA, Lee KR, Lai JY. Homostructured graphene oxide-graphene quantum dots nanocomposite-based membranes with tunable interlayer spacing for the purification of butanol. Sep Purif Technol 2022. [DOI: 10.1016/j.seppur.2021.120166] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Chiu CY, Lin G, Wang CJ, Hung SI, Chung WH. Metabolomics reveals microbial-derived metabolites associated with immunoglobulin E responses in filaggrin-related atopic dermatitis. Pediatr Allergy Immunol 2021; 32:1709-1717. [PMID: 34087019 DOI: 10.1111/pai.13570] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 05/23/2021] [Accepted: 05/31/2021] [Indexed: 11/27/2022]
Abstract
BACKGROUND Filaggrin (FLG) gene mutation and immunoglobulin E (IgE)-mediated sensitization are the most important predictors of atopic dermatitis (AD). However, a metabolomics-based approach to address the metabolic impact of FLG mutations on allergic IgE responses for AD is still lacking. We, though, determine the relationships of metabolic profiles in AD with FLG mutations and allergic responses. METHODS Eighty-one children with adolescent AD (n = 58) and healthy controls (n = 23) were prospectively enrolled. Mutations in the filaggrin gene were identified using whole-exome sequencing, and plasma metabolic profiles were determined using 1 H-nuclear magnetic resonance (NMR) spectroscopy. Integrative analyses of their associations related to total serum IgE levels were performed, and further metabolic functional pathways for AD were also assessed. RESULTS Metabolites contributed to the separation between AD and controls were identified using the supervised partial least squares discriminant analysis (Q2 /R2 = 0.90, Ppermutation <0.001). Nitrogen and amino acid metabolisms for energy production, and microbe-related methane and propanoate metabolisms were significantly associated with AD compared with healthy controls (FDR-adjusted p < .05). Five of fifteen metabolites related to FLG mutations were positively correlated with total serum IgE levels. Among them, dimethylamine and isopropanol were strongly associated with methane metabolism and propanoate metabolism, respectively, in AD with FLG mutations (FDR-adjusted p < .01). CONCLUSION A strong correlation of microbial-derived metabolites, dimethylamine and isopropanol, with FLG mutations and IgE allergic reactions provides the influence of host genetics on the microbiome to regulate susceptibility to allergic responses in the pathogenesis of AD.
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Affiliation(s)
- Chih-Yung Chiu
- Department of Pediatrics, Chang Gung Memorial Hospital at Linkou, Chang Gung University, Taoyuan, Taiwan.,Clinical Metabolomics Core Laboratory, Chang Gung Memorial Hospital at Linkou, Taoyuan, Taiwan
| | - Gigin Lin
- Clinical Metabolomics Core Laboratory, Chang Gung Memorial Hospital at Linkou, Taoyuan, Taiwan.,Department of Medical Imaging and Intervention, Chang Gung Memorial Hospital at Linkou, Chang Gung University, Taoyuan, Taiwan
| | - Chia-Jung Wang
- Department of Pediatrics, Chang Gung Memorial Hospital at Linkou, Chang Gung University, Taoyuan, Taiwan
| | - Shuen-Iu Hung
- Cancer Vaccine and Immune Cell Therapy Core Laboratory, Chang Gung Memorial Hospital, Chang Gung University, Taoyuan, Taiwan
| | - Wen-Hung Chung
- Department of Dermatology, Drug Hypersensitivity Clinical and Research Center, Chang Gung Memorial Hospital, Taipei, Taiwan
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5
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Cui Y, Yang KL, Zhou K. Using Co-Culture to Functionalize Clostridium Fermentation. Trends Biotechnol 2020; 39:914-926. [PMID: 33342558 DOI: 10.1016/j.tibtech.2020.11.016] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2020] [Revised: 11/22/2020] [Accepted: 11/25/2020] [Indexed: 01/23/2023]
Abstract
Clostridium fermentations have been developed for producing butanol and other value-added chemicals, but their development is constrained by some limitations, such as relatively high substrate cost and the need to maintain an anaerobic condition. Recently, co-culture is emerging as a popular way to address these limitations by introducing a partner strain with Clostridium. Generally speaking, the co-culture strategy enables the use of a cheaper substrate, maintains the growth of Clostridium without any anaerobic treatment, improves product yields, and/or widens the product spectrum. Herein, we review recent developments of co-culture strategies involving Clostridium species according to their partner stains' functions with representative examples. We also discuss research challenges that need to be addressed for the future development of Clostridium co-cultures.
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Affiliation(s)
- Yonghao Cui
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore, 117585, Singapore
| | - Kun-Lin Yang
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore, 117585, Singapore.
| | - Kang Zhou
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore, 117585, Singapore.
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6
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Thieme N, Panitz JC, Held C, Lewandowski B, Schwarz WH, Liebl W, Zverlov V. Milling byproducts are an economically viable substrate for butanol production using clostridial ABE fermentation. Appl Microbiol Biotechnol 2020; 104:8679-8689. [PMID: 32915256 PMCID: PMC7502454 DOI: 10.1007/s00253-020-10882-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 08/14/2020] [Accepted: 09/02/2020] [Indexed: 12/14/2022]
Abstract
Butanol is a platform chemical that is utilized in a wide range of industrial products and is considered a suitable replacement or additive to liquid fuels. So far, it is mainly produced through petrochemical routes. Alternative production routes, for example through biorefinery, are under investigation but are currently not at a market competitive level. Possible alternatives, such as acetone-butanol-ethanol (ABE) fermentation by solventogenic clostridia are not market-ready to this day either, because of their low butanol titer and the high costs of feedstocks. Here, we analyzed wheat middlings and wheat red dog, two wheat milling byproducts available in large quantities, as substrates for clostridial ABE fermentation. We could identify ten strains that exhibited good butanol yields on wheat red dog. Two of the best ABE producing strains, Clostridium beijerinckii NCIMB 8052 and Clostridium diolis DSM 15410, were used to optimize a laboratory-scale fermentation process. In addition, enzymatic pretreatment of both milling byproducts significantly enhanced ABE production rates of the strains C. beijerinckii NCIMB 8052 and C. diolis DSM 15410. Finally, a profitability analysis was performed for small- to mid-scale ABE fermentation plants that utilize enzymatically pretreated wheat red dog as substrate. The estimations show that such a plant could be commercially successful.Key points• Wheat milling byproducts are suitable substrates for clostridial ABE fermentation.• Enzymatic pretreatment of wheat red dog and middlings increases ABE yield.• ABE fermentation plants using wheat red dog as substrate are economically viable. Graphical abstract.
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Affiliation(s)
- Nils Thieme
- Technical University of Munich, Emil-Ramann-Str. 4, 85354, Freising, Germany
| | - Johanna C Panitz
- Technical University of Munich, Emil-Ramann-Str. 4, 85354, Freising, Germany
- Technical University of Munich, Weihenstephaner Berg 3, 85354, Freising, Germany
| | - Claudia Held
- Technical University of Munich, Emil-Ramann-Str. 4, 85354, Freising, Germany
- TDK Electronics AG, Rosenheimer Str. 141e, 81671, Munich, Germany
| | - Birgit Lewandowski
- Fritzmeier Umwelttechnik GmbH & Co KG, Dorfstraße 7, 85653, Aying, Germany
- Electrochaea GmbH, Semmelweisstrasse 3, 82152, Planegg, Germany
| | - Wolfgang H Schwarz
- Technical University of Munich, Emil-Ramann-Str. 4, 85354, Freising, Germany
- aspratis GmbH, Huebnerstrasse 11, 80637, Munich, Germany
| | - Wolfgang Liebl
- Technical University of Munich, Emil-Ramann-Str. 4, 85354, Freising, Germany
| | - Vladimir Zverlov
- Technical University of Munich, Emil-Ramann-Str. 4, 85354, Freising, Germany.
- Institute of Molecular Genetics, RAS, Kurchatov Sq 2, 123128, Moscow, Russia.
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Jiang Y, Lv Y, Wu R, Lu J, Dong W, Zhou J, Zhang W, Xin F, Jiang M. Consolidated bioprocessing performance of a two‐species microbial consortium for butanol production from lignocellulosic biomass. Biotechnol Bioeng 2020; 117:2985-2995. [DOI: 10.1002/bit.27464] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Revised: 05/11/2020] [Accepted: 06/15/2020] [Indexed: 12/12/2022]
Affiliation(s)
- Yujia Jiang
- State Key Laboratory of Materials‐Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering Nanjing Tech University Nanjing China
| | - Yang Lv
- State Key Laboratory of Materials‐Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering Nanjing Tech University Nanjing China
| | - Ruofan Wu
- State Key Laboratory of Materials‐Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering Nanjing Tech University Nanjing China
| | - Jiasheng Lu
- State Key Laboratory of Materials‐Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering Nanjing Tech University Nanjing China
| | - Weiliang Dong
- State Key Laboratory of Materials‐Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering Nanjing Tech University Nanjing China
- Jiangsu National Synergetic Innovation Center for Advanced Materials Nanjing Tech University Nanjing China
| | - Jie Zhou
- State Key Laboratory of Materials‐Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering Nanjing Tech University Nanjing China
| | - Wenming Zhang
- State Key Laboratory of Materials‐Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering Nanjing Tech University Nanjing China
- Jiangsu National Synergetic Innovation Center for Advanced Materials Nanjing Tech University Nanjing China
| | - Fengxue Xin
- State Key Laboratory of Materials‐Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering Nanjing Tech University Nanjing China
- Jiangsu National Synergetic Innovation Center for Advanced Materials Nanjing Tech University Nanjing China
| | - Min Jiang
- State Key Laboratory of Materials‐Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering Nanjing Tech University Nanjing China
- Jiangsu National Synergetic Innovation Center for Advanced Materials Nanjing Tech University Nanjing China
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Aerobic acetone-butanol-isopropanol (ABI) fermentation through a co-culture of Clostridium beijerinckii G117 and recombinant Bacillus subtilis 1A1. Metab Eng Commun 2020; 11:e00137. [PMID: 32612931 PMCID: PMC7322341 DOI: 10.1016/j.mec.2020.e00137] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Revised: 05/14/2020] [Accepted: 06/06/2020] [Indexed: 02/07/2023] Open
Abstract
An engineered B. subtilis 1A1 strain (BsADH2) expressing a secondary alcohol dehydrogenase (CpSADH) was co-cultured with C. beijerinckii G117 under an aerobic condition. During the fermentation on glucose, B. subtilis BsADH2 depleted oxygen in culture media completely and created an anaerobic environment for C. beijerinckii G117, an obligate anaerobe, to grow. Meanwhile, lactate produced by B. subtilis BsADH2 was re-assimilated by C. beijerinckii G117. In return, acetone produced by C. beijerinckii G117 was reduced into isopropanol by B. subtilis BsADH2 via expressing the CpSADH, which helped maintain the redox balance of the engineered B. subtilis. In the symbiotic system consisting of two strains, 1.7 g/L of acetone, 4.8 g/L of butanol, and 0.9 g/L of isopropanol (with an isopropanol/acetone ratio of 0.53) was produced from 60 g/L of glucose. This symbiotic system also worked when oxygen was supplied to the culture, although less isopropanol was produced (0.9 g/L of acetone, 4.9 g/L of butanol, and 0.2 g/L of isopropanol). The isopropanol titer was increased substantially to 2.5 g/L when we increased the inoculum size of B. subtilis BsADH2 and optimized other process parameters. With the Bacillus-Clostridium co-culture, switching from the original acetone-butanol (AB) fermentation to an aerobic acetone-butanol-isopropanol (ABI) fermentation can be easily achieved without genetic engineering of Clostridium. This strategy of employing a recombinant Bacillus to co-culture with Clostridium should be potentially useful to modify traditional acetone-butanol-ethanol fermentation for the production of other value-added chemicals. A secondary alcohol dehydrogenase was expressed in Bacillus subtilis. Acetone-butanol was upgraded into acetone-butanol-isopropanol by B. subtilis. A mutualistic relationship was established between B. subtilis and C. beijerinckii. Aerobic co-culture of B. subtilis and C. beijerinckii was achieved. Clostridium fermentation was improved by introducing a genetically-modified strain.
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Qian X, Chen L, Sui Y, Chen C, Zhang W, Zhou J, Dong W, Jiang M, Xin F, Ochsenreither K. Biotechnological potential and applications of microbial consortia. Biotechnol Adv 2020; 40:107500. [DOI: 10.1016/j.biotechadv.2019.107500] [Citation(s) in RCA: 69] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Revised: 11/13/2019] [Accepted: 12/17/2019] [Indexed: 12/20/2022]
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10
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Li S, Huang L, Ke C, Pang Z, Liu L. Pathway dissection, regulation, engineering and application: lessons learned from biobutanol production by solventogenic clostridia. BIOTECHNOLOGY FOR BIOFUELS 2020; 13:39. [PMID: 32165923 PMCID: PMC7060580 DOI: 10.1186/s13068-020-01674-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Accepted: 02/04/2020] [Indexed: 06/01/2023]
Abstract
The global energy crisis and limited supply of petroleum fuels have rekindled the interest in utilizing a sustainable biomass to produce biofuel. Butanol, an advanced biofuel, is a superior renewable resource as it has a high energy content and is less hygroscopic than other candidates. At present, the biobutanol route, employing acetone-butanol-ethanol (ABE) fermentation in Clostridium species, is not economically competitive due to the high cost of feedstocks, low butanol titer, and product inhibition. Based on an analysis of the physiological characteristics of solventogenic clostridia, current advances that enhance ABE fermentation from strain improvement to product separation were systematically reviewed, focusing on: (1) elucidating the metabolic pathway and regulation mechanism of butanol synthesis; (2) enhancing cellular performance and robustness through metabolic engineering, and (3) optimizing the process of ABE fermentation. Finally, perspectives on engineering and exploiting clostridia as cell factories to efficiently produce various chemicals and materials are also discussed.
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Affiliation(s)
- Shubo Li
- College of Light Industry and Food Engineering, Guangxi University, Nanning, 530004 China
| | - Li Huang
- College of Light Industry and Food Engineering, Guangxi University, Nanning, 530004 China
| | - Chengzhu Ke
- College of Light Industry and Food Engineering, Guangxi University, Nanning, 530004 China
| | - Zongwen Pang
- College of Life Science and Technology, Guangxi University, Nanning, 530005 China
| | - Liming Liu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122 China
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Liu L, Yang J, Yang Y, Luo L, Wang R, Zhang Y, Yuan H. Consolidated bioprocessing performance of bacterial consortium EMSD5 on hemicellulose for isopropanol production. BIORESOURCE TECHNOLOGY 2019; 292:121965. [PMID: 31415990 DOI: 10.1016/j.biortech.2019.121965] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 08/04/2019] [Accepted: 08/05/2019] [Indexed: 06/10/2023]
Abstract
Consolidated bioprocessing (CBP) of lignocellulose by bacterial consortium for isopropanol production is considered as the most promising strategy. However, low utilization of xylan caused by the complex sidechain structure remains inhibit the conversion of full-biomass. In this study, isopropanol production from different lignocelluloses by the consortium EMSD5 through CBP was performed. A total of 7.00 g/L of isopropanol was obtained from corncob by optimizing fermentation conditions. Isopropanol production by EMSD5 was mainly based on utilizing xylan in corncob and isopropanol titer was increased by 47.71% and reached up to 8.39 g/L using arabinoxylan compared with linear xylan. The analysis of community structures and the isolation of key strain confirmed the enrichment of the isopropanol producer, Clostridium beijierinckii, in the bacterial community when it was incubated with corn glucuronoarabinoxylan and the cooperation between C. beijerinckii and lignocellulose degraders. The unique features of EMSD5 could lead to large-scale isopropanol production using lignocellulose.
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Affiliation(s)
- Liang Liu
- State Key Laboratory of Agrobiotechnology and Key Laboratory of Soil Microbiology, Ministry of Agriculture, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Jinshui Yang
- State Key Laboratory of Agrobiotechnology and Key Laboratory of Soil Microbiology, Ministry of Agriculture, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Yi Yang
- State Key Laboratory of Agrobiotechnology and Key Laboratory of Soil Microbiology, Ministry of Agriculture, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Lijin Luo
- Fujian Institute of Microbiology, Fuzhou 350007, China
| | - Ruonan Wang
- State Key Laboratory of Agrobiotechnology and Key Laboratory of Soil Microbiology, Ministry of Agriculture, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Yu Zhang
- State Key Laboratory of Agrobiotechnology and Key Laboratory of Soil Microbiology, Ministry of Agriculture, College of Biological Sciences, China Agricultural University, Beijing 100193, China
| | - Hongli Yuan
- State Key Laboratory of Agrobiotechnology and Key Laboratory of Soil Microbiology, Ministry of Agriculture, College of Biological Sciences, China Agricultural University, Beijing 100193, China.
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Dos Santos Vieira CF, Maugeri Filho F, Maciel Filho R, Pinto Mariano A. Acetone-free biobutanol production: Past and recent advances in the Isopropanol-Butanol-Ethanol (IBE) fermentation. BIORESOURCE TECHNOLOGY 2019; 287:121425. [PMID: 31085056 DOI: 10.1016/j.biortech.2019.121425] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Revised: 05/02/2019] [Accepted: 05/03/2019] [Indexed: 06/09/2023]
Abstract
Production of butanol for fuel via the conventional Acetone-Butanol-Ethanol fermentation has been considered economically risky because of a potential oversupply of acetone. Alternatively, acetone is converted into isopropanol by specific solventogenic Clostridium species in the Isopropanol-Butanol-Ethanol (IBE) fermentation. This route, although less efficient, has been gaining attention because IBE mixtures are a potential fuel. The present work is dedicated to reviewing past and recent advances in microorganisms, feedstock, and fermentation equipment for IBE production. In our analysis we demonstrate the importance of novel engineered IBE-producing Clostridium strains and cell retention systems to decrease the staggering number of fermentation tanks required by IBE plants equipped with conventional technology. We also summarize the recent progress on recovery techniques integrated with fermentation, especially gas stripping. In addition, we assessed ongoing pilot-plant efforts that have been enabling IBE production from woody feedstock.
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Affiliation(s)
- Carla Ferreira Dos Santos Vieira
- Laboratory of Optimization, Design, and Advanced Control - Fermentation Division (LOPCA-Ferm), School of Chemical Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Francisco Maugeri Filho
- Bioprocess and Metabolic Engineering Laboratory (LEMeB), School of Food Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Rubens Maciel Filho
- Laboratory of Optimization, Design, and Advanced Control - Fermentation Division (LOPCA-Ferm), School of Chemical Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Adriano Pinto Mariano
- Laboratory of Optimization, Design, and Advanced Control - Fermentation Division (LOPCA-Ferm), School of Chemical Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil.
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Benali M, Ajao O, El Mehdi N, Restrepo AM, Fradj N, Boumghar Y. Acetone–Butanol–Ethanol Production from Eastern Canadian Yellow Birch and Screening of Isopropanol–Butanol–Ethanol-Producing Strains. Ind Biotechnol (New Rochelle N Y) 2019. [DOI: 10.1089/ind.2019.0002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- Marzouk Benali
- Natural Resources Canada, CanmetENERGY, Varennes, Canada
| | - Olumoye Ajao
- Natural Resources Canada, CanmetENERGY, Varennes, Canada
| | - Naima El Mehdi
- Natural Resources Canada, CanmetENERGY, Varennes, Canada
| | | | - Narimene Fradj
- Université du Québec à Trois-Rivières, Department of Chemistry, Biochemistry and Physics, Trois-Rivières, Canada
| | - Yacine Boumghar
- Centre d'études des procédés chimiques du Québec, Montréal, Canada
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Wetland Sediments Host Diverse Microbial Taxa Capable of Cycling Alcohols. Appl Environ Microbiol 2019; 85:AEM.00189-19. [PMID: 30979841 PMCID: PMC6544822 DOI: 10.1128/aem.00189-19] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2019] [Accepted: 04/07/2019] [Indexed: 12/26/2022] Open
Abstract
Understanding patterns of organic matter degradation in wetlands is essential for identifying the substrates and mechanisms supporting greenhouse gas production and emissions from wetlands, the main natural source of methane in the atmosphere. Alcohols are common fermentation products but are poorly studied as key intermediates in organic matter degradation in wetlands. By investigating genes, pathways, and microorganisms potentially accounting for the high concentrations of ethanol and isopropanol measured in Prairie Pothole wetland sediments, this work advanced our understanding of alcohol fermentations in wetlands linked to extremely high greenhouse gas emissions. Moreover, the novel alcohol dehydrogenases and microbial taxa potentially involved in alcohol metabolism may serve biotechnological efforts in bioengineering commercially valuable alcohol production and in the discovery of novel isopropanol producers or isopropanol fermentation pathways. Alcohols are commonly derived from the degradation of organic matter and yet are rarely measured in environmental samples. Wetlands in the Prairie Pothole Region (PPR) support extremely high methane emissions and the highest sulfate reduction rates reported to date, likely contributing to a significant proportion of organic matter mineralization in this system. While ethanol and isopropanol concentrations up to 4 to 5 mM in PPR wetland pore fluids have been implicated in sustaining these high rates of microbial activity, the mechanisms that support alcohol cycling in this ecosystem are poorly understood. We leveraged metagenomic and transcriptomic tools to identify genes, pathways, and microorganisms potentially accounting for alcohol cycling in PPR wetlands. Phylogenetic analyses revealed diverse alcohol dehydrogenases and putative substrates. Alcohol dehydrogenase and aldehyde dehydrogenase genes were included in 62 metagenome-assembled genomes (MAGs) affiliated with 16 phyla. The most frequently encoded pathway (in 30 MAGs) potentially accounting for alcohol production was a Pyrococcus furiosus-like fermentation which can involve pyruvate:ferredoxin oxidoreductase (PFOR). Transcripts for 93 of 137 PFOR genes in these MAGs were detected, as well as for 158 of 243 alcohol dehydrogenase genes retrieved from these same MAGs. Mixed acid fermentation and heterofermentative lactate fermentation were also frequently encoded. Finally, we identified 19 novel putative isopropanol dehydrogenases in 15 MAGs affiliated with Proteobacteria, Acidobacteria, Chloroflexi, Planctomycetes, Ignavibacteriae, Thaumarchaeota, and the candidate divisions KSB1 and Rokubacteria. We conclude that diverse microorganisms may use uncommon and potentially novel pathways to produce ethanol and isopropanol in PPR wetland sediments. IMPORTANCE Understanding patterns of organic matter degradation in wetlands is essential for identifying the substrates and mechanisms supporting greenhouse gas production and emissions from wetlands, the main natural source of methane in the atmosphere. Alcohols are common fermentation products but are poorly studied as key intermediates in organic matter degradation in wetlands. By investigating genes, pathways, and microorganisms potentially accounting for the high concentrations of ethanol and isopropanol measured in Prairie Pothole wetland sediments, this work advanced our understanding of alcohol fermentations in wetlands linked to extremely high greenhouse gas emissions. Moreover, the novel alcohol dehydrogenases and microbial taxa potentially involved in alcohol metabolism may serve biotechnological efforts in bioengineering commercially valuable alcohol production and in the discovery of novel isopropanol producers or isopropanol fermentation pathways.
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The draft genome sequence of Clostridium sp. strain CT7, an isolate capable of producing butanol but not acetone and 1,3-propanediol from crude glycerol. 3 Biotech 2019; 9:63. [PMID: 30729087 DOI: 10.1007/s13205-019-1598-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2018] [Accepted: 01/25/2019] [Indexed: 10/27/2022] Open
Abstract
A solventogenic Clostridium sp. strain CT7 which could utilize glycerol directly to produce high yields of butanol was isolated. In the presence of crude glycerol, strain CT7 synthesized butanol through a unique butanol-ethanol (BE) fermentation pathway in which acetone and 1,3-propanediol (1,3-PDO) were not produced. The genome of strain CT7 which has a G + C content of 30.3% was estimated to be 5.99 Mb and contained 4319 putative Open Reading Frames (ORF). The putative annotated genes, which play major roles in BE production from crude glycerol, included glycerol dehydrogenase gene (gdh), acetoacetyl-CoA transferase gene (ctfA/B), and bifunctional alcohol and aldehyde dehydrogenase gene (adhE). In addition, non-typical BE production is not coupled to 1,3-propanediol formation, which may due to the defect of 1, 3-PDO dehydrogenase gene (dhaT).
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16
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Xin F, Dong W, Zhang W, Ma J, Jiang M. Biobutanol Production from Crystalline Cellulose through Consolidated Bioprocessing. Trends Biotechnol 2019; 37:167-180. [DOI: 10.1016/j.tibtech.2018.08.007] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Revised: 08/22/2018] [Accepted: 08/24/2018] [Indexed: 01/08/2023]
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17
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Cheng B, Wang X, Lin Q, Zhang X, Meng L, Sun RC, Xin F, Ren J. New Understandings of the Relationship and Initial Formation Mechanism for Pseudo-lignin, Humins, and Acid-Induced Hydrothermal Carbon. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:11981-11989. [PMID: 30376319 DOI: 10.1021/acs.jafc.8b04754] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
The generation of pseudo-lignin as byproduct during the lignocellulose acidic pretreatment has been proposed for many years. However, the detailed formation mechanism is still unclear. Moreover, there is a lack of understanding in the initial reaction during the formation of humins (byproducts in furfural production) and acid-induced hydrothermal carbon (carbon material). In this work, the initial formation of these three substances were investigated. We first found the common feature of their formation process was that carbohydrate-hydrolyzed compounds could form black polymers by condensing in acidic media, but the difference was dependent on the reaction degree. Furthermore, the results revealed that oxidation was an accelerator for condensations during producing black polymers because oxidized compounds could enhance the acidity of the reaction system. However, condensations of oxidized compounds were more difficult to proceed. Meanwhile, during the initial stage, the dominating pathway was that furfural condensed with itself and isomerized xylose via aldol-condensation.
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Affiliation(s)
- Banggui Cheng
- State Key Laboratory of Pulp and Paper Engineering , South China University of Technology , Guangzhou 510640 , China
| | - Xiaohui Wang
- State Key Laboratory of Pulp and Paper Engineering , South China University of Technology , Guangzhou 510640 , China
| | - Qixuan Lin
- State Key Laboratory of Pulp and Paper Engineering , South China University of Technology , Guangzhou 510640 , China
| | - Xiao Zhang
- State Key Laboratory of Pulp and Paper Engineering , South China University of Technology , Guangzhou 510640 , China
| | - Ling Meng
- State Key Laboratory of Pulp and Paper Engineering , South China University of Technology , Guangzhou 510640 , China
| | - Run-Cang Sun
- Center for Lignocellulose Science and Engineering, and Liaoning Key Laboratory Pulp and Paper Engineering , Dalian Polytechnic University , Dalian 116034 , China
| | - Fengxue Xin
- Biotechnology and Pharmaceutical Engineering , Nanjing University of Technology , Nanjing 211800 , China
| | - Junli Ren
- State Key Laboratory of Pulp and Paper Engineering , South China University of Technology , Guangzhou 510640 , China
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18
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Jiang Y, Zhang T, Lu J, Dürre P, Zhang W, Dong W, Zhou J, Jiang M, Xin F. Microbial co-culturing systems: butanol production from organic wastes through consolidated bioprocessing. Appl Microbiol Biotechnol 2018; 102:5419-5425. [DOI: 10.1007/s00253-018-8970-0] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Revised: 03/23/2018] [Accepted: 03/24/2018] [Indexed: 12/29/2022]
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19
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Kushwaha D, Srivastava N, Mishra I, Upadhyay SN, Mishra PK. Recent trends in biobutanol production. REV CHEM ENG 2018. [DOI: 10.1515/revce-2017-0041] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Abstract
Finite availability of conventional fossil carbonaceous fuels coupled with increasing pollution due to their overexploitation has necessitated the quest for renewable fuels. Consequently, biomass-derived fuels are gaining importance due to their economic viability and environment-friendly nature. Among various liquid biofuels, biobutanol is being considered as a suitable and sustainable alternative to gasoline. This paper reviews the present state of the preprocessing of the feedstock, biobutanol production through fermentation and separation processes. Low butanol yield and its toxicity are the major bottlenecks. The use of metabolic engineering and integrated fermentation and product recovery techniques has the potential to overcome these challenges. The application of different nanocatalysts to overcome the existing challenges in the biobutanol field is gaining much interest. For the sustainable production of biobutanol, algae, a third-generation feedstock has also been evaluated.
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Affiliation(s)
- Deepika Kushwaha
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU) , Varanasi 221005 , India
| | - Neha Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU) , Varanasi 221005 , India
| | - Ishita Mishra
- Green Brick Eco Solutions, Okha Industrial Area , New Delhi 110020 , India
| | - Siddh Nath Upadhyay
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU) , Varanasi 221005 , India
| | - Pradeep Kumar Mishra
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU) , Varanasi 221005 , India
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20
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High biobutanol production integrated with in situ extraction in the presence of Tween 80 by Clostridium acetobutylicum. Process Biochem 2018. [DOI: 10.1016/j.procbio.2018.01.013] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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21
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Chen C, Sun C, Wu YR. The Draft Genome Sequence of a Novel High-Efficient Butanol-Producing Bacterium Clostridium Diolis Strain WST. Curr Microbiol 2018; 75:1011-1015. [PMID: 29564548 DOI: 10.1007/s00284-018-1481-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Accepted: 03/17/2018] [Indexed: 12/25/2022]
Abstract
A wild-type solventogenic strain Clostridium diolis WST, isolated from mangrove sediments, was characterized to produce high amount of butanol and acetone with negligible level of ethanol and acids from glucose via a unique acetone-butanol (AB) fermentation pathway. Through the genomic sequencing, the assembled draft genome of strain WST is calculated to be 5.85 Mb with a GC content of 29.69% and contains 5263 genes that contribute to the annotation of 5049 protein-coding sequences. Within these annotated genes, the butanol dehydrogenase gene (bdh) was determined to be in a higher amount from strain WST compared to other Clostridial strains, which is positively related to its high-efficient production of butanol. Therefore, we present a draft genome sequence analysis of strain WST in this article that should facilitate to further understand the solventogenic mechanism of this special microorganism.
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Affiliation(s)
- Chaoyang Chen
- Department of Biology, Shantou University, Shantou, 515063, Guangdong, China
| | - Chongran Sun
- Department of Biology, Shantou University, Shantou, 515063, Guangdong, China
| | - Yi-Rui Wu
- Department of Biology, Shantou University, Shantou, 515063, Guangdong, China. .,STU-UNIVPM Joint Algal Research Center, Shantou University, Shantou, 515063, Guangdong, China. .,Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, 515063, Guangdong, China.
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22
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Peng H, Yuan L, Zhang J, Wu X, Liu Y, Liu Y, Ruan R. Adsorption of AgNO 3 onto bamboo hemicelluloses in aqueous medium. Carbohydr Polym 2018. [PMID: 29525175 DOI: 10.1016/j.carbpol.2018.01.051] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
An insight into the adsorption behavior between hemicellulose biomass and metal ions is important to utilize hemicelluloses as adsorbent. In this study, bamboo hemicelluloses were used as adsorbent for AgNO3 in aqueous medium. The adsorption amount of AgNO3 onto hemicelluloses was determined through an inductively coupled plasma-atomic emission spectrometer (ICP-AES). The morphology and the elemental composition of the recovered hemicelluloses were characterized using atomic force microscopy (AFM) and X-ray photoelectron spectroscopy (XPS) techniques, respectively. The filtrate after removing undissolved hemicelluloses was analyzed by ultraviolet-visible spectroscopy (UV-vis). Results demonstrated that the obtained highest adsorption amount of AgNO3 onto hemicelluloses was 42.82 mg/g under the conditions discussed. Some Ag+ was in situ reduced by hemicelluloses to form silver nanoparticles. Ag+ and the formed silver nanoparticles possibly destroyed the hydrogen-bonding network of hemicelluloses, resulting in the stretch of molecules and formed rod-like agglomerates with irregular length. Even an agglomerate with the length of 420 nm was found. The side chains and the newly formed carboxyl groups through oxidation of hemicelluloses by silver ions removed away from the hemicelluloses during adsorption. A part of Ag+ and silver nanoparticles were adsorbed on the unresolved hemicelluloses, and the other part was dispersed in the aqueous solution.
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Affiliation(s)
- Hong Peng
- Engineering Research Center of Biomass Conversion, Ministry of Education, Nanchang University, Nanchang, Jiangxi, 330047, PR China.
| | - Lin Yuan
- School of Materials Science and Engineering, Nanchang University, Nanchang, Jiangxi, 330031, PR China
| | - Jinsheng Zhang
- Engineering Research Center of Biomass Conversion, Ministry of Education, Nanchang University, Nanchang, Jiangxi, 330047, PR China
| | - Xiaodan Wu
- Engineering Research Center of Biomass Conversion, Ministry of Education, Nanchang University, Nanchang, Jiangxi, 330047, PR China
| | - Yang Liu
- Engineering Research Center of Biomass Conversion, Ministry of Education, Nanchang University, Nanchang, Jiangxi, 330047, PR China
| | - Yuhuan Liu
- Engineering Research Center of Biomass Conversion, Ministry of Education, Nanchang University, Nanchang, Jiangxi, 330047, PR China
| | - Roger Ruan
- Engineering Research Center of Biomass Conversion, Ministry of Education, Nanchang University, Nanchang, Jiangxi, 330047, PR China; Center for Biorefining and Department of Bioproducts and Biosystems Engineering, University of Minnesota, St. Paul, MN, 55108, USA
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23
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Xin F, Yan W, Zhou J, Wu H, Dong W, Ma J, Zhang W, Jiang M. Exploitation of novel wild type solventogenic strains for butanol production. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:252. [PMID: 30250504 PMCID: PMC6145368 DOI: 10.1186/s13068-018-1252-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Accepted: 09/06/2018] [Indexed: 05/17/2023]
Abstract
Butanol has been regarded as an important bulk chemical and advanced biofuel; however, large scaling butanol production by solventogenic Clostridium sp. is still not economically feasible due to the high cost of substrates, low butanol titer and yield caused by the toxicity of butanol and formation of by-products. Renewed interests in biobutanol as biofuel and rapid development in genetic tools have spurred technological advances to strain modifications. Comprehensive reviews regarding these aspects have been reported elsewhere in detail. Meanwhile, more wild type butanol producers with unique properties were also isolated and characterized. However, few reviews addressed these discoveries of novel wild type solventogenic Clostridium sp. strains. Accordingly, this review aims to comprehensively summarize the most recent advances on wild type butanol producers in terms of fermentation patterns, substrate utilization et al. Future perspectives using these native ones as chassis for genetic modification were also discussed.
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Affiliation(s)
- Fengxue Xin
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211816 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211816 People’s Republic of China
| | - Wei Yan
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211816 People’s Republic of China
| | - Jie Zhou
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211816 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211816 People’s Republic of China
| | - Hao Wu
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211816 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211816 People’s Republic of China
| | - Weiliang Dong
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211816 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211816 People’s Republic of China
| | - Jiangfeng Ma
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211816 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211816 People’s Republic of China
| | - Wenming Zhang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211816 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211816 People’s Republic of China
| | - Min Jiang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211816 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211816 People’s Republic of China
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24
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Cheng B, Zhang X, Lin Q, Xin F, Sun R, Wang X, Ren J. A new approach to recycle oxalic acid during lignocellulose pretreatment for xylose production. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:324. [PMID: 30534202 PMCID: PMC6280388 DOI: 10.1186/s13068-018-1325-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2018] [Accepted: 11/29/2018] [Indexed: 05/12/2023]
Abstract
BACKGROUND Dilute oxalic acid pretreatment has drawn much attention because it could selectively hydrolyse the hemicellulose fraction during lignocellulose pretreatment. However, there are few studies focusing on the recovery of oxalic acid. Here, we reported a new approach to recycle oxalic acid used in pretreatment via ethanol extraction. RESULTS The highest xylose content in hydrolysate was 266.70 mg xylose per 1 g corncob (85.0% yield), which was achieved using 150 mmol/L oxalic acid under the optimized treatment condition (140 °C, 2.5 h). These pretreatment conditions were employed to the subsequent pretreatment using recycled oxalic acid. Oxalic acid in the hydrolysate could be recycled according to the following steps: (1) water was removed via evaporation and vacuum drying, (2) ethanol was used to extract oxalic acid in the remaining mixture, and (3) oxalic acid and ethanol were separated by reduced pressure evaporation. The total xylose yields could be stabilized by intermittent adding oxalic acid, and the yields were in range of 46.7-64.3% in this experiment. CONCLUSIONS This sustainable approach of recycling and reuse of oxalic acid has a significant potential application for replacing traditional dilute mineral acid pretreatment of lignocellulose, which could contribute to reduce CO2 emissions and the cost of the pretreatment.
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Affiliation(s)
- Banggui Cheng
- State Key Laboratory of Pulp and Paper Engineering, South China University of Technology, Guangzhou, 510640 China
| | - Xiao Zhang
- State Key Laboratory of Pulp and Paper Engineering, South China University of Technology, Guangzhou, 510640 China
| | - Qixuan Lin
- State Key Laboratory of Pulp and Paper Engineering, South China University of Technology, Guangzhou, 510640 China
| | - Fengxue Xin
- Biotechnology and Pharmaceutical Engineering, Nanjing University of Technology, Nanjing, 211800 China
| | - Runcang Sun
- Centre for Lignocellulose Science and Engineering, and Liaoning Key Laboratory Pulp and Paper Engineering, Dalian Polytechnic University, Dalian, 116034 China
| | - Xiaohui Wang
- State Key Laboratory of Pulp and Paper Engineering, South China University of Technology, Guangzhou, 510640 China
| | - Junli Ren
- State Key Laboratory of Pulp and Paper Engineering, South China University of Technology, Guangzhou, 510640 China
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25
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Sun C, Zhang S, Xin F, Shanmugam S, Wu YR. Genomic comparison of Clostridium species with the potential of utilizing red algal biomass for biobutanol production. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:42. [PMID: 29467820 PMCID: PMC5815214 DOI: 10.1186/s13068-018-1044-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Accepted: 02/05/2018] [Indexed: 05/17/2023]
Abstract
BACKGROUND Sustainable biofuels, which are widely considered as an attractive alternative to fossil fuels, can be generated by utilizing various biomass from the environment. Marine biomass, such as red algal biomass, is regarded as one potential renewable substrate source for biofuels conversion due to its abundance of fermentable sugars (e.g., galactose). Previous studies focused on the enhancement of biofuels production from different Clostridium species; however, there has been limited investigation into their metabolic pathways, especially on the conversion of biofuels from galactose, via whole genomic comparison and evolutionary analysis. RESULTS Two galactose-utilizing Clostridial strains were examined and identified as Clostridium acetobutylicum strain WA and C. beijerinckii strain WB. Via the genomic sequencing of both strains, the comparison of the whole genome together with the relevant protein prediction of 33 other Clostridium species was established to reveal a clear genome profile based upon various genomic features. Among them, five representative strains, including C. beijerinckii NCIMB14988, C. diolis DSM 15410, C. pasteurianum BC1, strain WA and WB, were further discussed to demonstrate the main differences among their respective metabolic pathways, especially in their carbohydrate metabolism. The metabolic pathways involved in the generation of biofuels and other potential products (e.g., riboflavin) were also reconstructed based on the utilization of marine biomass. Finally, a batch fermentation process was performed to verify the fermentative products from strains WA and WB using 60 g/L of galactose, which is the main hydrolysate from algal biomass. It was observed that strain WA and WB could produce up to 16.98 and 12.47 g/L of biobutanol, together with 21,560 and 10,140 mL/L biohydrogen, respectively. CONCLUSIONS The determination of the production of various biofuels by both strains WA and WB and their genomic comparisons with other typical Clostridium species on the analysis of various metabolic pathways was presented. Through the identification of their metabolic pathways, which are involved in the conversion of galactose into various potential products, such as biobutanol, the obtained results extend the current insight into the potential capability of utilizing marine red algal biomass and provide a systematic investigation into the relationship between this genus and the generation of sustainable bioenergy.
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Affiliation(s)
- Chongran Sun
- Department of Biology, Shantou University, Shantou, 515063 Guangdong China
| | - Shuangfei Zhang
- Department of Biology, Shantou University, Shantou, 515063 Guangdong China
| | - Fengxue Xin
- Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, 515063 Guangdong China
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, 211816 Jiangsu China
| | | | - Yi-Rui Wu
- Department of Biology, Shantou University, Shantou, 515063 Guangdong China
- Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, 515063 Guangdong China
- STU-UNIVPM Joint Algal Research Center, Shantou University, Shantou, 515063 Guangdong China
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26
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Dai Z, Zhang S, Yang Q, Zhang W, Qian X, Dong W, Jiang M, Xin F. Genetic tool development and systemic regulation in biosynthetic technology. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:152. [PMID: 29881457 PMCID: PMC5984347 DOI: 10.1186/s13068-018-1153-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Accepted: 05/23/2018] [Indexed: 05/17/2023]
Abstract
With the increased development in research, innovation, and policy interest in recent years, biosynthetic technology has developed rapidly, which combines engineering, electronics, computer science, mathematics, and other disciplines based on classical genetic engineering and metabolic engineering. It gives a wider perspective and a deeper level to perceive the nature of life via cell mechanism, regulatory networks, or biological evolution. Currently, synthetic biology has made great breakthrough in energy, chemical industry, and medicine industries, particularly in the programmable genetic control at multiple levels of regulation to perform designed goals. In this review, the most advanced and comprehensive developments achieved in biosynthetic technology were represented, including genetic engineering as well as synthetic genomics. In addition, the superiority together with the limitations of the current genome-editing tools were summarized.
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Affiliation(s)
- Zhongxue Dai
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800 People’s Republic of China
| | - Shangjie Zhang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800 People’s Republic of China
| | - Qiao Yang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800 People’s Republic of China
| | - Wenming Zhang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211800 People’s Republic of China
| | - Xiujuan Qian
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800 People’s Republic of China
| | - Weiliang Dong
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211800 People’s Republic of China
| | - Min Jiang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211800 People’s Republic of China
| | - Fengxue Xin
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800 People’s Republic of China
- Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211800 People’s Republic of China
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27
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Jiang Y, Chen T, Dong W, Zhang M, Zhang W, Wu H, Ma J, Jiang M, Xin F. The Draft Genome Sequence of Clostridium beijerinckii NJP7, a Unique Bacterium Capable of Producing Isopropanol-Butanol from Hemicellulose Through Consolidated Bioprocessing. Curr Microbiol 2017; 75:305-308. [PMID: 29063966 DOI: 10.1007/s00284-017-1380-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Accepted: 10/20/2017] [Indexed: 12/13/2022]
Abstract
A wild type solventogenic Clostridium beijerinckii NJP7 capable of converting polysaccharides, such as hemicellulose, into butanol and isopropanol via a unique acetone-isopropanol-butanol (AIB) pathway was isolated and characterized. This represents the first wild type isopropanol-butanol generating bacterium which could achieve butanol production directly from lignocellulose through consolidated bioprocessing (CBP). Strain NJP7 was isolated from decomposite soil from Laoshan Nature Park, China, and its genome shows 98.6% identical to 89.5% of the Clostridium diolis submitted genome sequence. The assembled draft genome contains 5.76 Mb and 5101 predicted encoding proteins with a GC content of 29.73%. Among these annotated proteins, hemicellulase and the secondary alcohol dehydrogenase play key roles in achievement of AIB production from hemicellulose through CBP.
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Affiliation(s)
- Yujia Jiang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800, People's Republic of China
| | - Tianpeng Chen
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800, People's Republic of China
| | - Weiliang Dong
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800, People's Republic of China
| | - Min Zhang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800, People's Republic of China
| | - Wenming Zhang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800, People's Republic of China.,Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211800, People's Republic of China
| | - Hao Wu
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800, People's Republic of China.,Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211800, People's Republic of China
| | - Jiangfeng Ma
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800, People's Republic of China
| | - Min Jiang
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800, People's Republic of China. .,Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing Tech University, Nanjing, 211800, People's Republic of China.
| | - Fengxue Xin
- State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Puzhu South Road 30#, Nanjing, 211800, People's Republic of China.
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Xin F, Dong W, Jiang Y, Ma J, Zhang W, Wu H, Zhang M, Jiang M. Recent advances on conversion and co-production of acetone-butanol-ethanol into high value-added bioproducts. Crit Rev Biotechnol 2017; 38:529-540. [PMID: 28911245 DOI: 10.1080/07388551.2017.1376309] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Butanol is an important bulk chemical and has been regarded as an advanced biofuel. Large-scale production of butanol has been applied for more than 100 years, but its production through acetone-butanol-ethanol (ABE) fermentation process by solventogenic Clostridium species is still not economically viable due to the low butanol titer and yield caused by the toxicity of butanol and a by-product, such as acetone. Renewed interest in biobutanol as a biofuel has spurred technological advances to strain modification and fermentation process design. Especially, with the development of interdisciplinary processes, the sole product or even the mixture of ABE produced through ABE fermentation process can be further used as platform chemicals for high value added product production through enzymatic or chemical catalysis. This review aims to comprehensively summarize the most recent advances on the conversion of acetone, butanol and ABE mixture into various products, such as isopropanol, butyl-butyrate and higher-molecular mass alkanes. Additionally, co-production of other value added products with ABE was also discussed.
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Affiliation(s)
- Fengxue Xin
- a State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering , Nanjing Tech University , Nanjing , P.R. China.,b Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM) , Nanjing Tech University , Nanjing , P.R. China
| | - Weiliang Dong
- a State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering , Nanjing Tech University , Nanjing , P.R. China.,b Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM) , Nanjing Tech University , Nanjing , P.R. China
| | - Yujia Jiang
- a State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering , Nanjing Tech University , Nanjing , P.R. China
| | - Jiangfeng Ma
- a State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering , Nanjing Tech University , Nanjing , P.R. China.,b Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM) , Nanjing Tech University , Nanjing , P.R. China
| | - Wenming Zhang
- a State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering , Nanjing Tech University , Nanjing , P.R. China.,b Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM) , Nanjing Tech University , Nanjing , P.R. China
| | - Hao Wu
- a State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering , Nanjing Tech University , Nanjing , P.R. China.,b Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM) , Nanjing Tech University , Nanjing , P.R. China
| | - Min Zhang
- a State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering , Nanjing Tech University , Nanjing , P.R. China.,b Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM) , Nanjing Tech University , Nanjing , P.R. China
| | - Min Jiang
- a State Key Laboratory of Materials-Oriented Chemical Engineering, College of Biotechnology and Pharmaceutical Engineering , Nanjing Tech University , Nanjing , P.R. China.,b Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM) , Nanjing Tech University , Nanjing , P.R. China
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