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Hird C, Barham KE, Franklin CE. Looking beyond the mean: quantile regression for comparative physiologists. J Exp Biol 2024; 227:jeb247122. [PMID: 38323449 PMCID: PMC10949063 DOI: 10.1242/jeb.247122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 02/01/2024] [Indexed: 02/08/2024]
Abstract
Statistical analyses that physiologists use to test hypotheses predominantly centre on means, but the tail ends of the response distribution can behave quite differently and underpin important scientific phenomena. We demonstrate that quantile regression (QR) offers a way to bypass some limitations of least squares regression (LSR) by building a picture of independent variable effects across the whole distribution of a dependent variable. We used LSR and QR with simulated and real datasets. With simulated data, LSR showed no change in the mean response but missed significant effects in the tails of the distribution found using QR. With real data, LSR showed a significant change in the mean response but missed a lack of response in the upper quantiles which was biologically revealing. Together, this highlights that QR can help to ask and answer more questions about variation in nature.
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Affiliation(s)
- Coen Hird
- School of the Environment, The University of Queensland, Brisbane (Magandjin), QLD 4072, Australia
| | - Kaitlin E. Barham
- School of the Environment, The University of Queensland, Brisbane (Magandjin), QLD 4072, Australia
| | - Craig E. Franklin
- School of the Environment, The University of Queensland, Brisbane (Magandjin), QLD 4072, Australia
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2
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Raisi-Estabragh Z, Salih A, Gkontra P, Atehortúa A, Radeva P, Boscolo Galazzo I, Menegaz G, Harvey NC, Lekadir K, Petersen SE. Estimation of biological heart age using cardiovascular magnetic resonance radiomics. Sci Rep 2022; 12:12805. [PMID: 35896705 PMCID: PMC9329281 DOI: 10.1038/s41598-022-16639-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 07/13/2022] [Indexed: 11/08/2022] Open
Abstract
We developed a novel interpretable biological heart age estimation model using cardiovascular magnetic resonance radiomics measures of ventricular shape and myocardial character. We included 29,996 UK Biobank participants without cardiovascular disease. Images were segmented using an automated analysis pipeline. We extracted 254 radiomics features from the left ventricle, right ventricle, and myocardium of each study. We then used Bayesian ridge regression with tenfold cross-validation to develop a heart age estimation model using the radiomics features as the model input and chronological age as the model output. We examined associations of radiomics features with heart age in men and women, observing sex-differential patterns. We subtracted actual age from model estimated heart age to calculate a "heart age delta", which we considered as a measure of heart aging. We performed a phenome-wide association study of 701 exposures with heart age delta. The strongest correlates of heart aging were measures of obesity, adverse serum lipid markers, hypertension, diabetes, heart rate, income, multimorbidity, musculoskeletal health, and respiratory health. This technique provides a new method for phenotypic assessment relating to cardiovascular aging; further studies are required to assess whether it provides incremental risk information over current approaches.
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Affiliation(s)
- Zahra Raisi-Estabragh
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK.
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK.
| | - Ahmed Salih
- Department of Computer Science, University of Verona, 37134, Verona, Italy
- Dept. de Matematiques I Informatica, University of Barcelona, 95P7+JH, Barcelona, Spain
| | - Polyxeni Gkontra
- Dept. de Matematiques I Informatica, University of Barcelona, 95P7+JH, Barcelona, Spain
| | - Angélica Atehortúa
- Dept. de Matematiques I Informatica, University of Barcelona, 95P7+JH, Barcelona, Spain
| | - Petia Radeva
- Dept. de Matematiques I Informatica, University of Barcelona, 95P7+JH, Barcelona, Spain
| | | | - Gloria Menegaz
- Department of Computer Science, University of Verona, 37134, Verona, Italy
| | - Nicholas C Harvey
- MRC Lifecourse Epidemiology Centre, University of Southampton, Southampton, UK
- NIHR Southampton Biomedical Research Centre, University of Southampton and University Hospital Southampton NHS Foundation Trust, Southampton, UK
| | - Karim Lekadir
- Dept. de Matematiques I Informatica, University of Barcelona, 95P7+JH, Barcelona, Spain
| | - Steffen E Petersen
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK
- Health Data Research UK, London, UK
- Alan Turing Institute, London, UK
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3
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Abdeen A, Agnani P, Careau V. The active mouse rests within: Energy management among and within individuals. Funct Ecol 2022. [DOI: 10.1111/1365-2435.13979] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Aly Abdeen
- Department of Biology University of Ottawa Ottawa ON Canada
| | - Paul Agnani
- Department of Biology University of Ottawa Ottawa ON Canada
| | - Vincent Careau
- Department of Biology University of Ottawa Ottawa ON Canada
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4
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Stupski SD, Schilder RJ. Operative temperature analysis of the honey bee Apis mellifera. J Exp Biol 2021; 224:269141. [PMID: 34125216 DOI: 10.1242/jeb.231134] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 06/10/2021] [Indexed: 11/20/2022]
Abstract
A key challenge for linking experiments of organisms performed in a laboratory environment to their performance in more complex environments is to determine thermal differences between a laboratory and the energetically complex terrestrial ecosystem. Studies performed in the laboratory do not account for many factors that contribute to the realized temperature of an organism in its natural environment. This can lead to modelling approaches that use experimentally derived data to erroneously link the air temperature in a laboratory to air temperatures in energetically heterogenous ecosystems. Traditional solutions to this classic problem assume that animals in an isotropic, isothermal chamber behave either as pure heterothermic ectotherms (body temperature=chamber temperature) or homeothermic endotherms (body temperature is entirely independent of chamber temperature). This approach may not be appropriate for endothermic insects which exist as an intermediate between strongly thermoregulating endotherms and purely thermoconforming species. Here, we use a heat budget modelling approach for the honey bee Apis mellifera to demonstrate that the unique physiology of endothermic insects may challenge many assumptions of traditional biophysical modelling approaches. We then demonstrate under modelled field-realistic scenarios that an experiment performed in a laboratory has the potential to both overestimate and underestimate the temperature of foraging bees when only air temperature is considered.
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Affiliation(s)
- Stanley D Stupski
- Department of Mechanical Engineering, University of Nevada,Reno, NV 89557, USA
| | - Rudolf J Schilder
- Department of Entomology, Pennsylvania State University, University Park, PA 16802, USA.,Department of Biology, Pennsylvania State University, University Park, PA 16801, USA
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Shuert CR, Halsey LG, Pomeroy PP, Twiss SD. Energetic limits: Defining the bounds and trade-offs of successful energy management in a capital breeder. J Anim Ecol 2020; 89:2461-2472. [PMID: 32895978 PMCID: PMC7693042 DOI: 10.1111/1365-2656.13312] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 06/24/2020] [Indexed: 12/26/2022]
Abstract
Judicious management of energy can be invaluable for animal survival and reproductive success. Capital breeding mammals typically transfer energy to their young at extremely high rates while undergoing prolonged fasting, making lactation a tremendously energy demanding period. Effective management of the competing demands of the mother's energy needs and those of her offspring is presumably fundamental to maximizing lifetime reproductive success. How does the mother maximize her chances of successfully rearing her pup, by ensuring that both her pup and herself have sufficient energy during this 'energetic fast'? While energy management models were first discussed in the 1990s, application of this analytical technique is still very much in its infancy. Recent work suggests that a broad range of species exhibits 'energy compensation'; during periods when they expend more energy on activity, their bodies partially compensate by reducing background (basal) metabolic rate as an adaptation to limit overall energy expenditure. However, the value of energy management models in understanding animal ecology is presently unclear. We investigate whether energy management models provide insights into the breeding strategy of phocid seals. Not only do we expect lactating seals to display energy compensation because of their breeding strategy of high energy transfer while fasting, but we anticipate that mothers exhibiting a lack of energy compensation are less likely to rear offspring successfully. On the Isle of May in Scotland, we collected heart rate data as a proxy for energy expenditure in 52 known individual grey seal (Halichoerus grypus) mothers, repeatedly across 3 years of breeding. We provide evidence that grey seal mothers typically exhibit energy compensation during lactation by downregulating their background metabolic rate to limit daily energy expenditure during periods when other energy costs are relatively high. However, individuals that fail to energy compensate during the lactation period are more likely to end lactation earlier than expected. Our study is the first to demonstrate the importance of energy compensation to an animal's reproductive expenditure. Moreover, our multi-seasonal data indicate that environmental stressors may reduce the capacity of some individuals to follow the energy compensation strategy.
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Affiliation(s)
| | - Lewis G Halsey
- Department of Life Sciences, University of Roehampton, London, UK
| | - Patrick P Pomeroy
- Scottish Oceans Institute, University of St. Andrews, St. Andrews, UK
| | - Sean D Twiss
- Department of Biosciences, Durham University, Durham, UK
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Baškiera S, Gvoždík L. Thermal independence of energy management in a tailed amphibian. JOURNAL OF VERTEBRATE BIOLOGY 2020. [DOI: 10.25225/jvb.20057] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Senka Baškiera
- Department of Botany and Zoology, Masaryk University, Brno, Czech Republic; e-mail:
| | - Lumír Gvoždík
- Institute of Vertebrate Biology, Czech Academy of Sciences, Brno, Czech Republic; e-mail:
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