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Sun XW, Li HR, Jin XL, Tang X, Wang DW, Zhang X, Zhang JG. Structural and Functional Differences in Small Intestinal and Fecal Microbiota: 16S rRNA Gene Investigation in Rats. Microorganisms 2024; 12:1764. [PMID: 39338439 PMCID: PMC11434385 DOI: 10.3390/microorganisms12091764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Revised: 08/13/2024] [Accepted: 08/22/2024] [Indexed: 09/30/2024] Open
Abstract
To compare the differences in floral composition and functions between the two types of microbiota, ileal contents and feces were collected from Sprague Dawley (SD) rats fed in a conventional or specific-pathogen free (SPF) environment and rats fed a high-fat diet (HFD), and the V3-V4 region of the 16S ribosomal ribonucleic acid (rRNA) gene in these rats was then amplified and sequenced. Compared with feces, about 60% of the bacterial genera in the ileum were exclusive, with low abundance (operational taxonomic units (OTUs) < 1000). Of bacteria shared between the ileum and feces, a few genera were highly abundant (dominant), whereas most had low abundance (less dominant). The dominant bacteria differed between the ileum and feces. Ileal bacteria showed greater β-diversity, and the distance between in-group samples was nearer than that between paired ileum-feces samples. Moreover, the ileum shared various biomarkers and functions with feces (p < 0.05). The HFD and SPF conditions had a profound influence on α-diversity and abundance but not on the exclusive/shared features or β-diversity of samples. The present findings suggested that, under conventional circumstances, fecal bacteria can represent approximately 40% of the low abundant ileal bacterial genera and that dominant fecal bacteria failed to represent the ileal dominant flora. Moreover, fecal flora diversity does not reflect β-diversity in the ileum.
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Affiliation(s)
- Xiao-Wei Sun
- Pathology Institute, School of Basic Medical Sciences, Lanzhou University, Lanzhou 730000, China
| | - Hong-Rui Li
- Pathology Institute, School of Basic Medical Sciences, Lanzhou University, Lanzhou 730000, China
| | - Xiao-Lei Jin
- Pathology Institute, School of Basic Medical Sciences, Lanzhou University, Lanzhou 730000, China
| | - Xiao Tang
- Pathology Institute, School of Basic Medical Sciences, Lanzhou University, Lanzhou 730000, China
| | - Da-Wen Wang
- Pathology Institute, School of Basic Medical Sciences, Lanzhou University, Lanzhou 730000, China
| | - Xiao Zhang
- Pathology Institute, School of Basic Medical Sciences, Lanzhou University, Lanzhou 730000, China
| | - Jian-Gang Zhang
- Pathology Institute, School of Basic Medical Sciences, Lanzhou University, Lanzhou 730000, China
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Li W, Chen W. Weight cycling based on altered immune microenvironment as a result of metaflammation. Nutr Metab (Lond) 2023; 20:13. [PMID: 36814270 PMCID: PMC9945679 DOI: 10.1186/s12986-023-00731-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 02/07/2023] [Indexed: 02/24/2023] Open
Abstract
As a result of the obesity epidemic, more people are concerned about losing weight; however, weight regain is common, leading to repeated weight loss and weight cycling. The health benefits of early weight loss are nullified by weight regain after weight cycling, which has much more severe metabolic consequences. Weight cycling alters body composition, resulting in faster fat recovery and slower muscle reconstruction. This evident fat accumulation, muscle loss, and ectopic fat deposition destroy the intestinal barrier, increase the permeability of the small intestinal epithelium, and cause the lipotoxicity of lipid metabolites and toxins to leak into extraintestinal tissues and circulation. It causes oxidative stress and hypoxia in local tissues and immune cell infiltration in various tissues, all contributing to the adaptation to this metabolic change. Immune cells transmit inflammatory responses in adipose and skeletal muscle tissue by secreting cytokines and adipokines, which mediate immune cell pathways and cause metaflammation and inefficient metabolic degradation. In this review, we focus on the regulatory function of the immunological microenvironment in the final metabolic outcome, with a particular emphasis on the cellular and molecular processes of local and systemic metaflammation induced by weight cycling-induced changes in body composition. Metaflammation in adipose and muscle tissues that is difficult to relieve may cause weight cycling. As this chronic low-grade inflammation spreads throughout the body, metabolic complications associated with weight cycling are triggered. Inhibiting the onset and progression of metabolic inflammation and enhancing the immune microenvironment of adipose and muscle tissues may be the first step in addressing weight cycling.
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Affiliation(s)
- Wanyang Li
- grid.413106.10000 0000 9889 6335Department of Clinical Nutrition, Chinese Academy of Medical Sciences - Peking Union Medical College, Peking Union Medical College Hospital, No. 1 Shuaifuyuan, Dongcheng District, Beijing, 100730 China
| | - Wei Chen
- Department of Clinical Nutrition, Chinese Academy of Medical Sciences - Peking Union Medical College, Peking Union Medical College Hospital, No. 1 Shuaifuyuan, Dongcheng District, Beijing, 100730, China.
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Duszka K, Ellero-Simatos S, Ow GS, Defernez M, Paramalingam E, Tett A, Ying S, König J, Narbad A, Kuznetsov VA, Guillou H, Wahli W. Complementary intestinal mucosa and microbiota responses to caloric restriction. Sci Rep 2018; 8:11338. [PMID: 30054525 PMCID: PMC6063912 DOI: 10.1038/s41598-018-29815-7] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Accepted: 07/18/2018] [Indexed: 12/21/2022] Open
Abstract
The intestine is key for nutrient absorption and for interactions between the microbiota and its host. Therefore, the intestinal response to caloric restriction (CR) is thought to be more complex than that of any other organ. Submitting mice to 25% CR during 14 days induced a polarization of duodenum mucosa cell gene expression characterised by upregulation, and downregulation of the metabolic and immune/inflammatory pathways, respectively. The HNF, PPAR, STAT, and IRF families of transcription factors, particularly the Pparα and Isgf3 genes, were identified as potentially critical players in these processes. The impact of CR on metabolic genes in intestinal mucosa was mimicked by inhibition of the mTOR pathway. Furthermore, multiple duodenum and faecal metabolites were altered in CR mice. These changes were dependent on microbiota and their magnitude corresponded to microbial density. Further experiments using mice with depleted gut bacteria and CR-specific microbiota transfer showed that the gene expression polarization observed in the mucosa of CR mice is independent of the microbiota and its metabolites. The holistic interdisciplinary approach that we applied allowed us to characterize various regulatory aspects of the host and microbiota response to CR.
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Affiliation(s)
- Kalina Duszka
- Lee Kong Chian School of Medicine, Nanyang Technological University Singapore, Singapore, 308232, Singapore.
- Center for Integrative Genomics, University of Lausanne, Lausanne, 1015, Switzerland.
- Department of Nutritional Sciences, University of Vienna, Vienna, 1090, Austria.
| | - Sandrine Ellero-Simatos
- Toxalim (Research Centre in Food Toxicology), Université de Toulouse, INRA, ENVT, INP-Purpan, UPS, Toulouse, 31300, France
| | - Ghim Siong Ow
- Bioinformatics Institute, A*STAR Biomedical Sciences Institutes, Singapore, 13867, Singapore
| | - Marianne Defernez
- Quadram Institute Bioscience, , Norwich Science Park, Norwich, Norfolk, NR7UA, UK
| | - Eeswari Paramalingam
- Lee Kong Chian School of Medicine, Nanyang Technological University Singapore, Singapore, 308232, Singapore
| | - Adrian Tett
- Quadram Institute Bioscience, , Norwich Science Park, Norwich, Norfolk, NR7UA, UK
| | - Shi Ying
- Quadram Institute Bioscience, , Norwich Science Park, Norwich, Norfolk, NR7UA, UK
| | - Jürgen König
- Department of Nutritional Sciences, University of Vienna, Vienna, 1090, Austria
- Vienna Metabolomics Center (VIME), University of Vienna, Vienna, 1090, Austria
| | - Arjan Narbad
- Quadram Institute Bioscience, , Norwich Science Park, Norwich, Norfolk, NR7UA, UK
| | - Vladimir A Kuznetsov
- Bioinformatics Institute, A*STAR Biomedical Sciences Institutes, Singapore, 13867, Singapore
- SUNY Upstate Medical University Syracuse, Syracuse, NY, 13210, USA
| | - Hervé Guillou
- Toxalim (Research Centre in Food Toxicology), Université de Toulouse, INRA, ENVT, INP-Purpan, UPS, Toulouse, 31300, France
| | - Walter Wahli
- Lee Kong Chian School of Medicine, Nanyang Technological University Singapore, Singapore, 308232, Singapore.
- Center for Integrative Genomics, University of Lausanne, Lausanne, 1015, Switzerland.
- Toxalim (Research Centre in Food Toxicology), Université de Toulouse, INRA, ENVT, INP-Purpan, UPS, Toulouse, 31300, France.
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