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For: Jackson JS, Houshmandi SS, Lopez Leban F, Olivas WM. Recruitment of the Puf3 protein to its mRNA target for regulation of mRNA decay in yeast. RNA 2004;10:1625-36. [PMID: 15337848 PMCID: PMC1370648 DOI: 10.1261/rna.7270204] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2004] [Accepted: 06/24/2004] [Indexed: 05/21/2023]
Number Cited by Other Article(s)
1
Mejía-Jaramillo AM, Fernandez GJ, Ospina-Zapata H, Murillo AM, Jimenez DE, Gómez LA, Triana-Chávez O. PUF3 RNA binding protein of Trypanosoma cruzi regulates mitochondrial morphology and function. Heliyon 2024;10:e32810. [PMID: 39022037 PMCID: PMC11252720 DOI: 10.1016/j.heliyon.2024.e32810] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Revised: 06/07/2024] [Accepted: 06/10/2024] [Indexed: 07/20/2024]  Open
2
Tian X, Volkovinskiy A, Marchisio MA. RNAi-based Boolean gates in the yeast Saccharomyces cerevisiae. Front Bioeng Biotechnol 2024;12:1392967. [PMID: 38895554 PMCID: PMC11184144 DOI: 10.3389/fbioe.2024.1392967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 05/06/2024] [Indexed: 06/21/2024]  Open
3
Chen S, Collart MA. Membrane-associated mRNAs: A Post-transcriptional Pathway for Fine-turning Gene Expression. J Mol Biol 2024;436:168579. [PMID: 38648968 DOI: 10.1016/j.jmb.2024.168579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 04/14/2024] [Accepted: 04/16/2024] [Indexed: 04/25/2024]
4
Hayashi S, Iwamoto K, Yoshihisa T. A non-canonical Puf3p-binding sequence regulates CAT5/COQ7 mRNA under both fermentable and respiratory conditions in budding yeast. PLoS One 2023;18:e0295659. [PMID: 38100455 PMCID: PMC10723686 DOI: 10.1371/journal.pone.0295659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 11/23/2023] [Indexed: 12/17/2023]  Open
5
Chen S, Allen G, Panasenko OO, Collart MA. Not4-dependent targeting of MMF1 mRNA to mitochondria limits its expression via ribosome pausing, Egd1 ubiquitination, Caf130, no-go-decay and autophagy. Nucleic Acids Res 2023;51:5022-5039. [PMID: 37094076 PMCID: PMC10250226 DOI: 10.1093/nar/gkad299] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 04/11/2023] [Indexed: 04/26/2023]  Open
6
Satoh R, Tanaka T, Yoshida N, Tanaka C, Takasaki T, Sugiura R. Fission Yeast PUF Proteins Puf3 and Puf4 Are Novel Regulators of PI4P5K Signaling. Biol Pharm Bull 2023;46:163-169. [PMID: 36724944 DOI: 10.1248/bpb.b22-00569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
7
Organelle-targeted imaging based on fluorogen-activating RNA aptamers in living cells. Anal Chim Acta 2022;1209:339816. [DOI: 10.1016/j.aca.2022.339816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 04/04/2022] [Accepted: 04/05/2022] [Indexed: 11/21/2022]
8
Feng H, Wan C, Zhang Z, Chen H, Li Z, Jiang H, Yin M, Dong S, Dou D, Wang Y, Zheng X, Ye W. Specific interaction of an RNA-binding protein with the 3'-UTR of its target mRNA is critical to oomycete sexual reproduction. PLoS Pathog 2021;17:e1010001. [PMID: 34648596 PMCID: PMC8547697 DOI: 10.1371/journal.ppat.1010001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 10/26/2021] [Accepted: 10/03/2021] [Indexed: 01/17/2023]  Open
9
Phosphorylation of mRNA-Binding Proteins Puf1 and Puf2 by TORC2-Activated Protein Kinase Ypk1 Alleviates Their Repressive Effects. MEMBRANES 2021;11:membranes11070500. [PMID: 34209236 PMCID: PMC8304900 DOI: 10.3390/membranes11070500] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 06/24/2021] [Accepted: 06/29/2021] [Indexed: 01/13/2023]
10
Records of RNA locations in living yeast revealed through covalent marks. Proc Natl Acad Sci U S A 2020;117:23539-23547. [PMID: 32907940 PMCID: PMC7519331 DOI: 10.1073/pnas.1921408117] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
11
Bhondeley M, Liu Z. Mitochondrial Biogenesis Is Positively Regulated by Casein Kinase I Hrr25 Through Phosphorylation of Puf3 in Saccharomyces cerevisiae. Genetics 2020;215:463-482. [PMID: 32317286 PMCID: PMC7268985 DOI: 10.1534/genetics.120.303191] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 04/20/2020] [Indexed: 11/18/2022]  Open
12
Regulation of Translation in the Protozoan Parasite Leishmania. Int J Mol Sci 2020;21:ijms21082981. [PMID: 32340274 PMCID: PMC7215931 DOI: 10.3390/ijms21082981] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Revised: 04/16/2020] [Accepted: 04/20/2020] [Indexed: 01/31/2023]  Open
13
Functions, mechanisms and regulation of Pumilio/Puf family RNA binding proteins: a comprehensive review. Mol Biol Rep 2019;47:785-807. [PMID: 31643042 DOI: 10.1007/s11033-019-05142-6] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 10/15/2019] [Indexed: 12/16/2022]
14
Matsuyama T. Recent developments in terminator technology in Saccharomyces cerevisiae. J Biosci Bioeng 2019;128:655-661. [PMID: 31324384 DOI: 10.1016/j.jbiosc.2019.06.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 06/07/2019] [Accepted: 06/07/2019] [Indexed: 11/26/2022]
15
Fischer AD, Olivas WM. Multiple Puf proteins regulate the stability of ribosome biogenesis transcripts. RNA Biol 2018;15:1228-1243. [PMID: 30251908 PMCID: PMC6284577 DOI: 10.1080/15476286.2018.1521211] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]  Open
16
Novel insights into global translational regulation through Pumilio family RNA-binding protein Puf3p revealed by ribosomal profiling. Curr Genet 2018;65:201-212. [PMID: 29951697 DOI: 10.1007/s00294-018-0862-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Revised: 06/16/2018] [Accepted: 06/19/2018] [Indexed: 01/13/2023]
17
Liang X, Hart KJ, Dong G, Siddiqui FA, Sebastian A, Li X, Albert I, Miao J, Lindner SE, Cui L. Puf3 participates in ribosomal biogenesis in malaria parasites. J Cell Sci 2018;131:jcs.212597. [PMID: 29487181 DOI: 10.1242/jcs.212597] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Accepted: 02/16/2018] [Indexed: 12/11/2022]  Open
18
Lapointe CP, Stefely JA, Jochem A, Hutchins PD, Wilson GM, Kwiecien NW, Coon JJ, Wickens M, Pagliarini DJ. Multi-omics Reveal Specific Targets of the RNA-Binding Protein Puf3p and Its Orchestration of Mitochondrial Biogenesis. Cell Syst 2018;6:125-135.e6. [PMID: 29248374 PMCID: PMC5799006 DOI: 10.1016/j.cels.2017.11.012] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Revised: 09/14/2017] [Accepted: 11/19/2017] [Indexed: 12/31/2022]
19
Protein-RNA networks revealed through covalent RNA marks. Nat Methods 2015;12:1163-70. [PMID: 26524240 PMCID: PMC4707952 DOI: 10.1038/nmeth.3651] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Accepted: 10/05/2015] [Indexed: 12/29/2022]
20
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p. Sci Rep 2015;5:15518. [PMID: 26493364 PMCID: PMC4616039 DOI: 10.1038/srep15518] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2015] [Accepted: 09/29/2015] [Indexed: 01/11/2023]  Open
21
Glucose-Regulated Phosphorylation of the PUF Protein Puf3 Regulates the Translational Fate of Its Bound mRNAs and Association with RNA Granules. Cell Rep 2015;11:1638-50. [PMID: 26051939 DOI: 10.1016/j.celrep.2015.05.014] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Revised: 03/04/2015] [Accepted: 05/06/2015] [Indexed: 01/07/2023]  Open
22
Shalem O, Sharon E, Lubliner S, Regev I, Lotan-Pompan M, Yakhini Z, Segal E. Systematic dissection of the sequence determinants of gene 3' end mediated expression control. PLoS Genet 2015;11:e1005147. [PMID: 25875337 PMCID: PMC4398552 DOI: 10.1371/journal.pgen.1005147] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2014] [Accepted: 03/17/2015] [Indexed: 01/09/2023]  Open
23
Russo J, Olivas WM. Conditional regulation of Puf1p, Puf4p, and Puf5p activity alters YHB1 mRNA stability for a rapid response to toxic nitric oxide stress in yeast. Mol Biol Cell 2015;26:1015-29. [PMID: 25631823 PMCID: PMC4357503 DOI: 10.1091/mbc.e14-10-1452] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
24
Harnessing natural sequence variation to dissect posttranscriptional regulatory networks in yeast. G3-GENES GENOMES GENETICS 2014;4:1539-53. [PMID: 24938291 PMCID: PMC4132183 DOI: 10.1534/g3.114.012039] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
25
Miller MA, Russo J, Fischer AD, Lopez Leban FA, Olivas WM. Carbon source-dependent alteration of Puf3p activity mediates rapid changes in the stabilities of mRNAs involved in mitochondrial function. Nucleic Acids Res 2013;42:3954-70. [PMID: 24371272 PMCID: PMC3973295 DOI: 10.1093/nar/gkt1346] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
26
Rowe W, Kershaw CJ, Castelli LM, Costello JL, Ashe MP, Grant CM, Sims PFG, Pavitt GD, Hubbard SJ. Puf3p induces translational repression of genes linked to oxidative stress. Nucleic Acids Res 2013;42:1026-41. [PMID: 24163252 PMCID: PMC3902938 DOI: 10.1093/nar/gkt948] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
27
Yamanishi M, Ito Y, Kintaka R, Imamura C, Katahira S, Ikeuchi A, Moriya H, Matsuyama T. A genome-wide activity assessment of terminator regions in Saccharomyces cerevisiae provides a ″terminatome″ toolbox. ACS Synth Biol 2013;2:337-47. [PMID: 23654277 DOI: 10.1021/sb300116y] [Citation(s) in RCA: 92] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
28
Mitochondrial protein synthesis, import, and assembly. Genetics 2013;192:1203-34. [PMID: 23212899 DOI: 10.1534/genetics.112.141267] [Citation(s) in RCA: 165] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
29
Weis BL, Schleiff E, Zerges W. Protein targeting to subcellular organelles via MRNA localization. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2013;1833:260-73. [PMID: 23457718 DOI: 10.1016/j.bbamcr.2012.04.004] [Citation(s) in RCA: 79] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
30
Measurements of the impact of 3' end sequences on gene expression reveal wide range and sequence dependent effects. PLoS Comput Biol 2013;9:e1002934. [PMID: 23505350 PMCID: PMC3591272 DOI: 10.1371/journal.pcbi.1002934] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2012] [Accepted: 01/08/2013] [Indexed: 12/21/2022]  Open
31
Freeberg MA, Han T, Moresco JJ, Kong A, Yang YC, Lu ZJ, Yates JR, Kim JK. Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae. Genome Biol 2013;14:R13. [PMID: 23409723 PMCID: PMC4053964 DOI: 10.1186/gb-2013-14-2-r13] [Citation(s) in RCA: 76] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2012] [Accepted: 02/14/2013] [Indexed: 01/31/2023]  Open
32
Van Etten J, Schagat TL, Hrit J, Weidmann CA, Brumbaugh J, Coon JJ, Goldstrohm AC. Human Pumilio proteins recruit multiple deadenylases to efficiently repress messenger RNAs. J Biol Chem 2012;287:36370-83. [PMID: 22955276 PMCID: PMC3476303 DOI: 10.1074/jbc.m112.373522] [Citation(s) in RCA: 149] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2012] [Revised: 09/05/2012] [Indexed: 11/06/2022]  Open
33
A eukaryotic translation initiation factor 4E-binding protein promotes mRNA decapping and is required for PUF repression. Mol Cell Biol 2012;32:4181-94. [PMID: 22890846 DOI: 10.1128/mcb.00483-12] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
34
Drosophila Pumilio protein contains multiple autonomous repression domains that regulate mRNAs independently of Nanos and brain tumor. Mol Cell Biol 2011;32:527-40. [PMID: 22064486 DOI: 10.1128/mcb.06052-11] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
35
Tanaka M, Sakai Y, Yamada O, Shintani T, Gomi K. In silico analysis of 3'-end-processing signals in Aspergillus oryzae using expressed sequence tags and genomic sequencing data. DNA Res 2011;18:189-200. [PMID: 21586533 PMCID: PMC3111234 DOI: 10.1093/dnares/dsr011] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
36
Quenault T, Lithgow T, Traven A. PUF proteins: repression, activation and mRNA localization. Trends Cell Biol 2011;21:104-12. [DOI: 10.1016/j.tcb.2010.09.013] [Citation(s) in RCA: 199] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2010] [Revised: 09/20/2010] [Accepted: 09/28/2010] [Indexed: 12/15/2022]
37
Miller MA, Olivas WM. Roles of Puf proteins in mRNA degradation and translation. WILEY INTERDISCIPLINARY REVIEWS-RNA 2010;2:471-92. [PMID: 21957038 DOI: 10.1002/wrna.69] [Citation(s) in RCA: 119] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
38
Cridge AG, Castelli LM, Smirnova JB, Selley JN, Rowe W, Hubbard SJ, McCarthy JEG, Ashe MP, Grant CM, Pavitt GD. Identifying eIF4E-binding protein translationally-controlled transcripts reveals links to mRNAs bound by specific PUF proteins. Nucleic Acids Res 2010;38:8039-50. [PMID: 20705650 PMCID: PMC3001062 DOI: 10.1093/nar/gkq686] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
39
Jiang H, Guan W, Gu Z. Tinkering evolution of post-transcriptional RNA regulons: puf3p in fungi as an example. PLoS Genet 2010;6:e1001030. [PMID: 20661438 PMCID: PMC2908677 DOI: 10.1371/journal.pgen.1001030] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2009] [Accepted: 06/16/2010] [Indexed: 11/19/2022]  Open
40
Li X, Quon G, Lipshitz HD, Morris Q. Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure. RNA (NEW YORK, N.Y.) 2010;16:1096-107. [PMID: 20418358 PMCID: PMC2874161 DOI: 10.1261/rna.2017210] [Citation(s) in RCA: 125] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
41
Lee D, Ohn T, Chiang YC, Quigley G, Yao G, Liu Y, Denis CL. PUF3 acceleration of deadenylation in vivo can operate independently of CCR4 activity, possibly involving effects on the PAB1-mRNP structure. J Mol Biol 2010;399:562-75. [PMID: 20435044 DOI: 10.1016/j.jmb.2010.04.034] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2009] [Revised: 04/08/2010] [Accepted: 04/19/2010] [Indexed: 02/01/2023]
42
A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs. Proc Natl Acad Sci U S A 2009;106:20192-7. [PMID: 19918084 DOI: 10.1073/pnas.0812079106] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
43
Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein. Proc Natl Acad Sci U S A 2009;106:20186-91. [PMID: 19901328 DOI: 10.1073/pnas.0812076106] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
44
Francischini CW, Quaggio RB. Molecular characterization of Arabidopsis thaliana PUF proteins - binding specificity and target candidates. FEBS J 2009;276:5456-70. [DOI: 10.1111/j.1742-4658.2009.07230.x] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
45
Noé G, De Gaudenzi JG, Frasch AC. Functionally related transcripts have common RNA motifs for specific RNA-binding proteins in trypanosomes. BMC Mol Biol 2008;9:107. [PMID: 19063746 PMCID: PMC2637893 DOI: 10.1186/1471-2199-9-107] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2008] [Accepted: 12/08/2008] [Indexed: 02/08/2023]  Open
46
Saint-Georges Y, Garcia M, Delaveau T, Jourdren L, Le Crom S, Lemoine S, Tanty V, Devaux F, Jacq C. Yeast mitochondrial biogenesis: a role for the PUF RNA-binding protein Puf3p in mRNA localization. PLoS One 2008;3:e2293. [PMID: 18523582 PMCID: PMC2387061 DOI: 10.1371/journal.pone.0002293] [Citation(s) in RCA: 179] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2008] [Accepted: 04/17/2008] [Indexed: 01/01/2023]  Open
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Ribonomic analysis of human Pum1 reveals cis-trans conservation across species despite evolution of diverse mRNA target sets. Mol Cell Biol 2008;28:4093-103. [PMID: 18411299 DOI: 10.1128/mcb.00155-08] [Citation(s) in RCA: 138] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
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Miller MT, Higgin JJ, Hall TMT. Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p. Nat Struct Mol Biol 2008;15:397-402. [PMID: 18327269 DOI: 10.1038/nsmb.1390] [Citation(s) in RCA: 101] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2007] [Accepted: 01/15/2008] [Indexed: 01/26/2023]
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Gupta YK, Nair DT, Wharton RP, Aggarwal AK. Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity. Structure 2008;16:549-57. [PMID: 18328718 DOI: 10.1016/j.str.2008.01.006] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2007] [Revised: 12/29/2007] [Accepted: 01/02/2008] [Indexed: 10/22/2022]
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Ulbricht RJ, Olivas WM. Puf1p acts in combination with other yeast Puf proteins to control mRNA stability. RNA (NEW YORK, N.Y.) 2008;14:246-62. [PMID: 18094119 PMCID: PMC2212245 DOI: 10.1261/rna.847408] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
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