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Esquivel-Mackenzie SP, Oltehua-Lopez O, Cuervo-López FDM, Texier AC. Physiological adaptation and population dynamics of a nitrifying sludge exposed to ampicillin. Int Microbiol 2024; 27:1035-1047. [PMID: 38010565 DOI: 10.1007/s10123-023-00452-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 11/06/2023] [Accepted: 11/10/2023] [Indexed: 11/29/2023]
Abstract
Antibiotics in wastewater treatment plants can alter the physiological activity and the structure of microbial communities through toxic and inhibitory effects. Physiological adaptation, kinetic, and population dynamics behavior of a nitrifying sludge was evaluated in a sequential batch reactor (SBR) fed with 14.4 mg/L of ampicillin (AMP). The addition of AMP did not affect ammonium consumption (100 mg NH4+-N/L) but provoked nitrite accumulation (0.90 mg NO2--N formed/mg NH4+-N consumed) and an inhibition of up to 67% on the nitrite oxidizing process. After 30 cycles under AMP feeding, the sludge recovered its nitrite oxidizing activity with a high nitrate yield (YNO3-) of 0.87 ± 0.10 mg NO3--N formed/mg NH4+-N consumed, carrying out again a stable and complete nitrifying process. Increases in specific rate of nitrate production (qNO3-) showed the physiological adaptation of the nitrite oxidizing bacteria to AMP inhibition. Ampicillin was totally removed since the first cycle of addition. Exposure to AMP had effects on the abundance of bacterial populations, promoting adaptation of the nitrifying sludge to the presence of the antibiotic and its consumption. Nitrosomonas and Nitrosospira always remained within the dominant genera, keeping the ammonium oxidizing process stable while an increase in Nitrospira abundance was observed, recovering the stability of the nitrite oxidizing process. Burkholderia, Pseudomonas, and Thauera might be some of the heterotrophic bacteria involved in AMP consumption.
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Affiliation(s)
- Sergio Pavel Esquivel-Mackenzie
- Department of Biotechnology-CBS, Metropolitan Autonomous University Iztapalapa, Av. Ferrocarril San Rafael Atlixco 186, 09310, Mexico City, Mexico
| | - Omar Oltehua-Lopez
- Department of Biotechnology-CBS, Metropolitan Autonomous University Iztapalapa, Av. Ferrocarril San Rafael Atlixco 186, 09310, Mexico City, Mexico
| | - Flor de María Cuervo-López
- Department of Biotechnology-CBS, Metropolitan Autonomous University Iztapalapa, Av. Ferrocarril San Rafael Atlixco 186, 09310, Mexico City, Mexico
| | - Anne-Claire Texier
- Department of Biotechnology-CBS, Metropolitan Autonomous University Iztapalapa, Av. Ferrocarril San Rafael Atlixco 186, 09310, Mexico City, Mexico.
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Isshiki R, Fujitani H, Tsuneda S. Variation in growth rates between cultures hinders the cultivation of ammonia-oxidizing bacteria. FEMS Microbiol Lett 2024; 371:fnae013. [PMID: 38400564 DOI: 10.1093/femsle/fnae013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 01/10/2024] [Accepted: 02/22/2024] [Indexed: 02/25/2024] Open
Abstract
Ammonia-oxidizing bacteria, key players in the nitrogen cycle, have been the focus of extensive research. Numerous novel species have been isolated and their growth dynamics were studied. Despite these efforts, controlling their growth to obtain diverse physiological findings remains a challenge. These bacteria often fail to grow, even under optimal conditions. This unpredictable growth pattern could be viewed as a survival strategy. Understanding this heterogeneous behavior could enhance our ability to culture these bacteria. In this study, the variation in the growth rate was quantified for the ammonia-oxidizing bacterium Nitrosomonas mobilis Ms1. Our findings revealed significant growth rate variation under low inoculum conditions. Interestingly, higher cell densities resulted in more stable cultures. A comparative analysis of three Nitrosomonas species showed a correlation between growth rate variation and culture failure. The greater the variation in growth rate, the higher the likelihood of culture failure.
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Affiliation(s)
- Rino Isshiki
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 2-17-2-1 Tsukisamu-higashi, Toyohira-ku, Sapporo, Hokkaido 062-8517, Japan
- Comprehensive Research Organization, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo 162-8480, Japan
| | - Hirotsugu Fujitani
- Department of Biological Sciences, Chuo University, 1-13-27 Kasuga, Bunkyo-ku, Tokyo 112-8551, Japan
- Research Organization for Nano & Life Innovation, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo 162-8480, Japan
| | - Satoshi Tsuneda
- Comprehensive Research Organization, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo 162-8480, Japan
- Research Organization for Nano & Life Innovation, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo 162-8480, Japan
- Department of Life Science and Medical Bioscience, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo 162-8480, Japan
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Oshiki M, Saito T, Nakaya Y, Satoh H, Okabe S. Growth of the Nitrosomonas europaea cells in the biofilm and planktonic growth mode: Responses of extracellular polymeric substances production and transcriptome. J Biosci Bioeng 2023; 136:430-437. [PMID: 37925312 DOI: 10.1016/j.jbiosc.2023.10.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 09/29/2023] [Accepted: 10/17/2023] [Indexed: 11/06/2023]
Abstract
Nitrosomonas europaea, an aerobic ammonia oxidizing bacterium, is responsible for the first and rate-limiting step of the nitrification process, and their ammonia oxidation activities are critical for the biogeochemical cycling and the biological nitrogen removal of wastewater treatment. In the present study, N. europaea cells were cultivated in the inorganic or organic media (the NBRC829 and the nutrient-rich, NR, media, respectively), and the cells proliferated in the form of planktonic and biofilm in those media, respectively. The N. europaea cells in the biofilm growth mode produced larger amounts of the extracellular polymeric substances (EPS), and the composition of the EPS was characterized by the chemical analyses including Fourier transform infrared spectroscopy (FT-IR) and 1H-nuclear magnetic resonance (NMR) measurements. The RNA-Seq analysis of N. europaea in the biofilm or planktonic growth mode revealed that the following gene transcripts involved in central nitrogen metabolisms were abundant in the biofilm growth mode; amo encoding ammonia monooxygenase, hao encoding hydroxylamine dehydrogenase, the gene encoding nitrosocyanine, nirK encoding copper-containing nitrite reductase. Additionally, the transcripts of the pepA and wza involved in the bacterial floc formation and the translocation of EPS, respectively, were also abundant in the biofilm-growth mode. Our study was first to characterize the EPS production and transcriptome of N. europaea in the biofilm and planktonic growth mode.
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Affiliation(s)
- Mamoru Oshiki
- Division of Environmental Engineering, Faculty of Engineering, Hokkaido University, North 13, West 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan.
| | - Takahiro Saito
- Division of Environmental Engineering, Faculty of Engineering, Hokkaido University, North 13, West 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
| | - Yuki Nakaya
- Division of Environmental Engineering, Faculty of Engineering, Hokkaido University, North 13, West 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
| | - Hisashi Satoh
- Division of Environmental Engineering, Faculty of Engineering, Hokkaido University, North 13, West 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
| | - Satoshi Okabe
- Division of Environmental Engineering, Faculty of Engineering, Hokkaido University, North 13, West 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
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Gonzalez-Silva BM, Jonassen KR, Bakke I, Østgaard K, Vadstein O. Understanding structure/function relationships in nitrifying microbial communities after cross-transfer between freshwater and seawater. Sci Rep 2021; 11:2979. [PMID: 33536458 PMCID: PMC7859187 DOI: 10.1038/s41598-021-82272-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2020] [Accepted: 12/17/2020] [Indexed: 12/05/2022] Open
Abstract
In this study, nitrification before and after abrupt cross-transfer in salinity was investigated in two moving bed biofilm reactors inoculated with nitrifying cultures that had adaptation to freshwater (FR) and seawater salinities (SR). FR and SR MBRRs were exposed to short and long term cross-transfer in salinity, and the functional capacity of nitrifying microbial communities was quantified by the estimation of ammonia and nitrite oxidation rates. Salinity induced successions were evaluated before and after salinity change by deep sequencing of 16S rRNA gene amplicons and statistical analysis. The bacterial community structure was characterized and Venn diagrams were included. The results indicated that after salinity cross-transfer, the FR was not significantly recovered at seawater salinity whereas SR showed high resistance to stress caused by low-salt. Succession and physiological plasticity were the main mechanisms of the long-term adaption of the nitrifying communities exposed to abrupt salinity changes. Independently of salinity, some nitrifiers presented high physiological plasticity towards salinity and were very successful at both zero and full seawater salinity. SR culture is robust and suitable inoculum for ammonium removal from recirculating aquaculture systems and industrial wastewaters with variable and fast salinity changes. Our findings contradict the current perspective of the significance of salinity on the structure of nitrifying communities.
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Affiliation(s)
- Blanca M Gonzalez-Silva
- Department of Biotechnology and Food Science, Faculty of Natural Sciences and Technology, NTNU-Norwegian University of Science and Technology, Sem Saelands v. 6/8, N-7491, Trondheim, Norway. .,Department of Civil and Environmental Engineering, NTNU-Norwegian University of Science and Technology, S. P. Andersens veg 5, N-7031, Trondheim, Norway.
| | - Kjell Rune Jonassen
- Department of Biotechnology and Food Science, Faculty of Natural Sciences and Technology, NTNU-Norwegian University of Science and Technology, Sem Saelands v. 6/8, N-7491, Trondheim, Norway.,VEAS, Bjerkåsholmen 125, 3470, Slemmestad, Oslo, Norway
| | - Ingrid Bakke
- Department of Biotechnology and Food Science, Faculty of Natural Sciences and Technology, NTNU-Norwegian University of Science and Technology, Sem Saelands v. 6/8, N-7491, Trondheim, Norway
| | - Kjetill Østgaard
- Department of Biotechnology and Food Science, Faculty of Natural Sciences and Technology, NTNU-Norwegian University of Science and Technology, Sem Saelands v. 6/8, N-7491, Trondheim, Norway
| | - Olav Vadstein
- Department of Biotechnology and Food Science, Faculty of Natural Sciences and Technology, NTNU-Norwegian University of Science and Technology, Sem Saelands v. 6/8, N-7491, Trondheim, Norway
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